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README.md
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- image-segmentation
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language:
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- en
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pretty_name: GenSegDataset Processed Medical Segmentation Backup
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---
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# GenSegDataset
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```text
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<dataset>/<protocol>/<split>/{images,masks}/
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<dataset>/manifest.jsonl
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```
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|---|---:|---:|---:|---|
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| `acdc_png` | `acdc_png.tar` | 61M | 726 | official:136/210/380 |
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| `bus_bra` | `bus_bra.tar` | 171M | 1875 | official:1312/188/375 |
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| `refuge2` | `refuge2.tar` | 133M | 1200 | official:400/400/400 |
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| `udiat` | `udiat.tar` | 17M | 163 | official:114/16/33 |
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- Some archives
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- image-segmentation
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language:
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- en
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pretty_name: GenSegDataset Processed Medical Segmentation Backup
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---
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# GenSegDataset
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## English
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This repository is a processed backup of medical image segmentation datasets used by the SegGen/NPJ experiments.
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Each `*.tar` archive expands to one dataset directory in the unified layout:
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```text
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<dataset>/<protocol>/<split>/{images,masks}/
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<dataset>/manifest.jsonl
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```
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The archives contain extracted and standardized PNG image/mask pairs. Splits are already prepared; users do not need to unzip original raw sources or create train/val/test splits again.
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Before upload, each dataset was checked for:
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- existing `train/val/test` split directories,
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- `images/` and `masks/` pairing by filename stem,
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- `metadata.json`,
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- `manifest.jsonl`.
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## 中文
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本仓库是 SegGen/NPJ 实验使用的医学图像分割数据集的已处理备份。
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每个 `*.tar` 解压后都是一个已经标准化好的数据集目录,统一结构如下:
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```text
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<dataset>/<protocol>/<split>/{images,masks}/
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<dataset>/metadata.json
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<dataset>/manifest.jsonl
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```
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这些压缩包中保存的是已经解压、标准化并划分好的 PNG 图像/掩码对,不是原始 raw zip。使用时不需要重新解压原始数据,也不需要重新划分 train/val/test。
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上传前已检查:
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- 是否存在 `train/val/test` 划分目录;
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- `images/` 与 `masks/` 是否按文件 stem 一一对应;
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- 是否存在 `metadata.json`;
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- 是否存在 `manifest.jsonl`。
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## Inventory / 数据清单
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| Dataset 数据集 | Archive 压缩包 | Server size 服务器大小 | Total images 总图像数 | Protocols train/val/test 划分 |
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| `acdc_png` | `acdc_png.tar` | 61M | 726 | official:136/210/380 |
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| `bus_bra` | `bus_bra.tar` | 171M | 1875 | official:1312/188/375 |
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| `refuge2` | `refuge2.tar` | 133M | 1200 | official:400/400/400 |
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| `udiat` | `udiat.tar` | 17M | 163 | official:114/16/33 |
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## Task grouping / 任务分组
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| Modality 模态 | Dataset(s) 数据集 | Task 任务 |
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| Dermoscopy 皮肤镜 | `medsegdb_isic2018`, `ham10000`, `ph2` | Skin lesion segmentation 皮肤病灶分割 |
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| Colonoscopy / Endoscopy 结肠镜/内镜 | `kvasir_seg`, `cvc_clinicdb`, `cvc_colondb`, `endoscene`, `etis_larib` | Polyp segmentation 息肉分割 |
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| Breast ultrasound 乳腺超声 | `busi`, `bus_bra`, `udiat` | Breast lesion segmentation 乳腺病灶分割 |
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| Fundus 眼底 | `fives`, `drive` | Vessel segmentation 血管分割 |
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| Fundus 眼底 | `refuge2` | Optic disc/cup segmentation 视盘/视杯分割 |
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| Fundus 眼底 | `idridd_segmentation` | Diabetic retinopathy lesion / optic disc segmentation 糖网病灶/视盘分割 |
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| Histopathology 病理 | `pannuke_semantic` | Semantic nuclei segmentation / cell typing 细胞核语义分割/分类 |
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| Histopathology 病理 | `monuseg`, `consep` | Nuclei segmentation 细胞核分割 |
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| CT | `medsegdb_kits19` | Kidney/tumor foreground segmentation 肾/肿瘤前景分割 |
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| MRI | `acdc_png` | Cardiac structure segmentation 心脏结构分割 |
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## Notes / 备注
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- `HF_UPLOAD_INVENTORY.tsv` contains the same split/count audit in tabular form.
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- `HF_UPLOAD_INVENTORY.tsv` 中保存了同样的划分和数量审计表。
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- Some older archives existed before this update; missing datasets were added from `/home/wzhang/LSC/Dataset/Segmentation/processed_unified` on 2026-07-01.
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- 部分旧压缩包在本次更新前已经存在;本次已从服务器 processed_unified 目录补齐缺失数据集。
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