MaybeRichard commited on
Commit
5493e6d
·
verified ·
1 Parent(s): 9bb2cc7

Update bilingual README

Browse files
Files changed (1) hide show
  1. README.md +56 -9
README.md CHANGED
@@ -4,14 +4,17 @@ task_categories:
4
  - image-segmentation
5
  language:
6
  - en
 
7
  pretty_name: GenSegDataset Processed Medical Segmentation Backup
8
  ---
9
 
10
  # GenSegDataset
11
 
12
- Processed and split medical image segmentation datasets used by the SegGen/NPJ experiments.
13
 
14
- Each `*.tar` expands to one dataset directory with the unified layout:
 
 
15
 
16
  ```text
17
  <dataset>/<protocol>/<split>/{images,masks}/
@@ -19,11 +22,39 @@ Each `*.tar` expands to one dataset directory with the unified layout:
19
  <dataset>/manifest.jsonl
20
  ```
21
 
22
- Splits are already prepared; archives contain extracted PNG image/mask pairs, not raw compressed source zips.
 
 
 
 
 
 
 
 
 
 
 
23
 
24
- ## Inventory
25
 
26
- | Dataset | Archive | Size on server | Total images across protocols | Protocols train/val/test |
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
27
  |---|---:|---:|---:|---|
28
  | `acdc_png` | `acdc_png.tar` | 61M | 726 | official:136/210/380 |
29
  | `bus_bra` | `bus_bra.tar` | 171M | 1875 | official:1312/188/375 |
@@ -46,8 +77,24 @@ Splits are already prepared; archives contain extracted PNG image/mask pairs, no
46
  | `refuge2` | `refuge2.tar` | 133M | 1200 | official:400/400/400 |
47
  | `udiat` | `udiat.tar` | 17M | 163 | official:114/16/33 |
48
 
49
- ## Notes
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
50
 
51
- - The inventory file `HF_UPLOAD_INVENTORY.tsv` contains the same split/count audit in tabular form.
52
- - Image/mask stems were checked for alignment before upload.
53
- - Some archives are older backups; newly added archives were uploaded from `/home/wzhang/LSC/Dataset/Segmentation/processed_unified` on 2026-07-01.
 
 
4
  - image-segmentation
5
  language:
6
  - en
7
+ - zh
8
  pretty_name: GenSegDataset Processed Medical Segmentation Backup
9
  ---
10
 
11
  # GenSegDataset
12
 
13
+ ## English
14
 
15
+ This repository is a processed backup of medical image segmentation datasets used by the SegGen/NPJ experiments.
16
+
17
+ Each `*.tar` archive expands to one dataset directory in the unified layout:
18
 
19
  ```text
20
  <dataset>/<protocol>/<split>/{images,masks}/
 
22
  <dataset>/manifest.jsonl
23
  ```
24
 
25
+ The archives contain extracted and standardized PNG image/mask pairs. Splits are already prepared; users do not need to unzip original raw sources or create train/val/test splits again.
26
+
27
+ Before upload, each dataset was checked for:
28
+
29
+ - existing `train/val/test` split directories,
30
+ - `images/` and `masks/` pairing by filename stem,
31
+ - `metadata.json`,
32
+ - `manifest.jsonl`.
33
+
34
+ ## 中文
35
+
36
+ 本仓库是 SegGen/NPJ 实验使用的医学图像分割数据集的已处理备份。
37
 
38
+ 每个 `*.tar` 解压后都是一个已经标准化好的数据集目录,统一结构如下:
39
 
40
+ ```text
41
+ <dataset>/<protocol>/<split>/{images,masks}/
42
+ <dataset>/metadata.json
43
+ <dataset>/manifest.jsonl
44
+ ```
45
+
46
+ 这些压缩包中保存的是已经解压、标准化并划分好的 PNG 图像/掩码对,不是原始 raw zip。使用时不需要重新解压原始数据,也不需要重新划分 train/val/test。
47
+
48
+ 上传前已检查:
49
+
50
+ - 是否存在 `train/val/test` 划分目录;
51
+ - `images/` 与 `masks/` 是否按文件 stem 一一对应;
52
+ - 是否存在 `metadata.json`;
53
+ - 是否存在 `manifest.jsonl`。
54
+
55
+ ## Inventory / 数据清单
56
+
57
+ | Dataset 数据集 | Archive 压缩包 | Server size 服务器大小 | Total images 总图像数 | Protocols train/val/test 划分 |
58
  |---|---:|---:|---:|---|
59
  | `acdc_png` | `acdc_png.tar` | 61M | 726 | official:136/210/380 |
60
  | `bus_bra` | `bus_bra.tar` | 171M | 1875 | official:1312/188/375 |
 
77
  | `refuge2` | `refuge2.tar` | 133M | 1200 | official:400/400/400 |
78
  | `udiat` | `udiat.tar` | 17M | 163 | official:114/16/33 |
79
 
80
+ ## Task grouping / 任务分组
81
+
82
+ | Modality 模态 | Dataset(s) 数据集 | Task 任务 |
83
+ |---|---|---|
84
+ | Dermoscopy 皮肤镜 | `medsegdb_isic2018`, `ham10000`, `ph2` | Skin lesion segmentation 皮肤病灶分割 |
85
+ | Colonoscopy / Endoscopy 结肠镜/内镜 | `kvasir_seg`, `cvc_clinicdb`, `cvc_colondb`, `endoscene`, `etis_larib` | Polyp segmentation 息肉分割 |
86
+ | Breast ultrasound 乳腺超声 | `busi`, `bus_bra`, `udiat` | Breast lesion segmentation 乳腺病灶分割 |
87
+ | Fundus 眼底 | `fives`, `drive` | Vessel segmentation 血管分割 |
88
+ | Fundus 眼底 | `refuge2` | Optic disc/cup segmentation 视盘/视杯分割 |
89
+ | Fundus 眼底 | `idridd_segmentation` | Diabetic retinopathy lesion / optic disc segmentation 糖网病灶/视盘分割 |
90
+ | Histopathology 病理 | `pannuke_semantic` | Semantic nuclei segmentation / cell typing 细胞核语义分割/分类 |
91
+ | Histopathology 病理 | `monuseg`, `consep` | Nuclei segmentation 细胞核分割 |
92
+ | CT | `medsegdb_kits19` | Kidney/tumor foreground segmentation 肾/肿瘤前景分割 |
93
+ | MRI | `acdc_png` | Cardiac structure segmentation 心脏结构分割 |
94
+
95
+ ## Notes / 备注
96
 
97
+ - `HF_UPLOAD_INVENTORY.tsv` contains the same split/count audit in tabular form.
98
+ - `HF_UPLOAD_INVENTORY.tsv` 中保存了同样的划分和数量审计表。
99
+ - Some older archives existed before this update; missing datasets were added from `/home/wzhang/LSC/Dataset/Segmentation/processed_unified` on 2026-07-01.
100
+ - 部分旧压缩包在本次更新前已经存在;本次已从服务器 processed_unified 目录补齐缺失数据集。