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Update README: document BraTS nested-by-volume layout

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  1. README.md +15 -3
README.md CHANGED
@@ -52,9 +52,17 @@ MedSeg-7D/
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  │ └── split_info.json CANONICAL patient-level split (seed=42, 80/20)
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  ├── BraTS2020/ (brain MRI FLAIR, 369 volumes → 22677 slices)
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- │ ├── images/ volume_<id>_slice_<s>.png (FLAIR channel)
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- │ ├── masks/ matching whole-tumor binary mask
 
 
 
 
 
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  │ └── split_info.json CANONICAL volume-level split (seed=42, 295/74)
 
 
 
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  ├── BUSI/ (breast ultrasound, 780 images)
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  │ ├── images/
@@ -215,9 +223,13 @@ info = json.load(open(os.path.join(ROOT, "ACDC", "split_info.json")))
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  train_patients = set(info["train_patients"])
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  # enumerate slices, check patient ID in filename to assign train/test
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- # BraTS (volume-level) — same pattern
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  info = json.load(open(os.path.join(ROOT, "BraTS2020", "split_info.json")))
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  train_volumes = set(info["train_patients"]) # key name retained from original
 
 
 
 
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  # CVC (video-level — recommended) or image-level (legacy)
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  info = json.load(open(os.path.join(ROOT, "CVC-ClinicDB", "video_split_seed42.json")))
 
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  │ └── split_info.json CANONICAL patient-level split (seed=42, 80/20)
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  ├── BraTS2020/ (brain MRI FLAIR, 369 volumes → 22677 slices)
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+ │ ├── images/
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+ ├── volume_1/ volume_1_slice_<s>.png (FLAIR channel, ~50-80 slices/vol)
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+ │ │ ├── volume_2/
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+ │ │ └── ... (369 vols)
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+ │ ├── masks/
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+ │ │ ├── volume_1/ matching whole-tumor binary mask
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+ │ │ └── ... (369 vols)
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  │ └── split_info.json CANONICAL volume-level split (seed=42, 295/74)
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+ │ # NOTE: BraTS slices are nested into per-volume subdirectories because of
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+ │ # HuggingFace's 10000 files-per-directory limit. Filenames preserve the
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+ │ # original volume_X_slice_Y.png convention.
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  ├── BUSI/ (breast ultrasound, 780 images)
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  │ ├── images/
 
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  train_patients = set(info["train_patients"])
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  # enumerate slices, check patient ID in filename to assign train/test
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+ # BraTS (volume-level) — slices are nested under per-volume subdirs
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  info = json.load(open(os.path.join(ROOT, "BraTS2020", "split_info.json")))
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  train_volumes = set(info["train_patients"]) # key name retained from original
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+ # To enumerate all training slices:
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+ # for vol in train_volumes:
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+ # for img_path in glob.glob(f"{ROOT}/BraTS2020/images/{vol}/*.png"):
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+ # ...
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  # CVC (video-level — recommended) or image-level (legacy)
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  info = json.load(open(os.path.join(ROOT, "CVC-ClinicDB", "video_split_seed42.json")))