Segmentation / code /scripts /vis_mask_v2.py
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Upload PixelGen code: cross-attention mask mode + multi-scale ablation configs
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import sys
sys.path.insert(0, "/data/sichengli/Code/PixelGen")
import torch
import numpy as np
from PIL import Image, ImageDraw, ImageFont
import torchvision.transforms as transforms
import torchvision.transforms.functional as TF
import os, random
from src.models.transformer.JiT_medical import JiTMedical
from src.diffusion.flow_matching.sampling_medical import EulerSamplerMedical
from src.diffusion.flow_matching.scheduling import LinearScheduler
from src.diffusion.base.guidance import simple_guidance_fn
device = torch.device("cuda:0")
# Load model
ckpt_path = "/data/sichengli/Code/PixelGen/medical_workdirs/exp_PixelGen_Medical_B16/epoch=236-step=100000.ckpt"
ckpt = torch.load(ckpt_path, map_location="cpu", weights_only=False)
state_dict = ckpt["state_dict"]
model = JiTMedical(
input_size=256, patch_size=16, in_channels=3,
hidden_size=768, depth=12, num_heads=12, mlp_ratio=4.0,
attn_drop=0.0, proj_drop=0.1, num_classes=1,
use_bottleneck=True, bottleneck_dim=128,
in_context_len=32, in_context_start=4, mask_in_channels=1
)
ema_state = {}
for k, v in state_dict.items():
if k.startswith("ema_denoiser."):
new_k = k.replace("ema_denoiser.", "").replace("_orig_mod.", "")
ema_state[new_k] = v
model.load_state_dict(ema_state, strict=False)
model = model.to(device).eval().to(torch.float32)
sampler = EulerSamplerMedical(
num_steps=50, guidance=2.0, timeshift=1.0,
guidance_interval_min=0.1, guidance_interval_max=0.9,
scheduler=LinearScheduler(), w_scheduler=LinearScheduler(),
guidance_fn=simple_guidance_fn,
).to(device)
# Load 8 samples
data_root = "/data2/sichengli/Data/test/Segmentation/OCTA500"
img_dir = os.path.join(data_root, "images")
mask_dir = os.path.join(data_root, "masks")
all_files = sorted([f for f in os.listdir(img_dir) if f.endswith(".png") and not f.startswith("thumb")])
random.seed(456)
selected = random.sample(all_files, 8)
images_list, masks_list = [], []
for fname in selected:
img = Image.open(os.path.join(img_dir, fname)).convert("L")
img = TF.resize(img, (256, 256))
images_list.append(TF.to_tensor(img).repeat(3, 1, 1))
mask = Image.open(os.path.join(mask_dir, fname)).convert("L")
mask = TF.resize(mask, (256, 256), interpolation=transforms.InterpolationMode.NEAREST)
masks_list.append(TF.to_tensor(mask))
real_images = torch.stack(images_list)
masks_tensor = torch.stack(masks_list)
# Generate
print("Generating...")
with torch.no_grad():
noise = torch.randn(8, 3, 256, 256, device=device)
x_trajs, _ = sampler._impl_sampling(model, noise, None, None, mask=masks_tensor.to(device))
generated = x_trajs[-1].clamp(-1, 1) * 0.5 + 0.5
# Create comparison: 8 rows x 3 columns (Mask | Generated | Real)
h, w = 256, 256
pad = 6
label_h = 40
n_rows = 8
n_cols = 3
canvas_w = n_cols * w + (n_cols + 1) * pad
canvas_h = n_rows * h + (n_rows + 1) * pad + label_h
canvas = np.ones((canvas_h, canvas_w, 3), dtype=np.uint8) * 30
# Add column labels
labels = ["Mask", "Generated", "Real"]
try:
font = ImageFont.truetype("/usr/share/fonts/truetype/dejavu/DejaVuSans-Bold.ttf", 24)
except Exception:
font = ImageFont.load_default()
pil_canvas = Image.fromarray(canvas)
draw = ImageDraw.Draw(pil_canvas)
for col, label in enumerate(labels):
x_pos = pad + col * (w + pad) + w // 2
bbox = draw.textbbox((0, 0), label, font=font)
text_w = bbox[2] - bbox[0]
draw.text((x_pos - text_w // 2, 8), label, fill=(255, 255, 255), font=font)
canvas = np.array(pil_canvas)
# Colormap for mask classes
color_map = {
0: (0, 0, 0),
50: (255, 80, 80),
100: (80, 255, 80),
150: (80, 80, 255),
200: (255, 255, 80),
250: (255, 80, 255),
}
for row in range(n_rows):
y = label_h + pad + row * (h + pad)
# Mask - colorized
m = masks_tensor[row, 0].numpy()
m_uint8 = (m * 255).astype(np.uint8)
m_colored = np.zeros((h, w, 3), dtype=np.uint8)
for val, color in color_map.items():
mask_region = np.abs(m_uint8.astype(int) - val) < 13
m_colored[mask_region] = color
canvas[y:y+h, pad:pad+w] = m_colored
# Generated
g = generated[row].cpu().permute(1, 2, 0).numpy()
g = (g * 255).clip(0, 255).astype(np.uint8)
canvas[y:y+h, 2*pad+w:2*pad+2*w] = g
# Real
r = real_images[row].permute(1, 2, 0).numpy()
r = (r * 255).clip(0, 255).astype(np.uint8)
canvas[y:y+h, 3*pad+2*w:3*pad+3*w] = r
out = "/data/sichengli/Code/PixelGen/medical_workdirs/exp_PixelGen_Medical_B16/val_samples/mask_control_final.png"
Image.fromarray(canvas).save(out)
print("Saved:", out, canvas.shape)