code/upload_ablation.sh

#!/bin/bash
# Upload all ablation experiment files to server
# Run this when the server is available

SSH_KEY="/home/richard/Documents/Code/sichengli/id_ed25519"
SERVER="root@183.147.142.42"
PORT="10073"
REMOTE_DIR="/data/sichengli/Code/PixelGen"

SCP_CMD="scp -i $SSH_KEY -P $PORT"
SSH_CMD="ssh -i $SSH_KEY $SERVER -p $PORT"

echo "=== Uploading modified model file ==="
$SCP_CMD src/models/transformer/JiT_medical.py $SERVER:$REMOTE_DIR/src/models/transformer/JiT_medical.py

echo "=== Uploading modified evaluation script ==="
$SCP_CMD scripts/evaluate_medical.py $SERVER:$REMOTE_DIR/scripts/evaluate_medical.py

echo "=== Creating configs_medical directory on server ==="
$SSH_CMD "mkdir -p $REMOTE_DIR/configs_medical"

echo "=== Uploading all config files ==="
$SCP_CMD configs_medical/PixelGen_Medical_CVC_S8_Spatial.yaml $SERVER:$REMOTE_DIR/configs_medical/
$SCP_CMD configs_medical/PixelGen_Medical_CVC_B8_Spatial.yaml $SERVER:$REMOTE_DIR/configs_medical/
$SCP_CMD configs_medical/PixelGen_Medical_CVC_B16_CrossAttn.yaml $SERVER:$REMOTE_DIR/configs_medical/
$SCP_CMD configs_medical/PixelGen_Medical_Kvasir_S8_Spatial.yaml $SERVER:$REMOTE_DIR/configs_medical/
$SCP_CMD configs_medical/PixelGen_Medical_Kvasir_B8_Spatial.yaml $SERVER:$REMOTE_DIR/configs_medical/
$SCP_CMD configs_medical/PixelGen_Medical_Kvasir_B16_CrossAttn.yaml $SERVER:$REMOTE_DIR/configs_medical/
$SCP_CMD configs_medical/PixelGen_Medical_REFUGE2_S8_Spatial.yaml $SERVER:$REMOTE_DIR/configs_medical/
$SCP_CMD configs_medical/PixelGen_Medical_REFUGE2_B8_Spatial.yaml $SERVER:$REMOTE_DIR/configs_medical/
$SCP_CMD configs_medical/PixelGen_Medical_REFUGE2_B16_CrossAttn.yaml $SERVER:$REMOTE_DIR/configs_medical/
$SCP_CMD configs_medical/PixelGen_Medical_OCTA500_B16_CrossAttn.yaml $SERVER:$REMOTE_DIR/configs_medical/
$SCP_CMD configs_medical/PixelGen_Medical_OCTA500_L16_Global.yaml $SERVER:$REMOTE_DIR/configs_medical/
$SCP_CMD configs_medical/PixelGen_Medical_OCTA500_XL16_Global.yaml $SERVER:$REMOTE_DIR/configs_medical/

echo "=== Uploading run scripts ==="
$SCP_CMD run_ablation.sh $SERVER:$REMOTE_DIR/run_ablation.sh

echo "=== Done! ==="
echo "Files uploaded to $SERVER:$REMOTE_DIR"