#!/usr/bin/env python """ Quick test script for medical image training pipeline. Runs a few steps to verify everything works. """ import os import sys sys.path.insert(0, os.path.dirname(os.path.dirname(os.path.abspath(__file__)))) import torch import torch.nn as nn from torch.utils.data import DataLoader # Test imports print("Testing imports...") from src.data.dataset.octa500 import OCTA500Dataset from src.models.transformer.JiT_medical import JiTMedical_B_16 from src.diffusion.flow_matching.scheduling import LinearScheduler import lpips print("All imports successful!") # Configuration DATA_ROOT = "/data2/sichengli/Data/test/Segmentation/OCTA500" BATCH_SIZE = 4 NUM_STEPS = 5 DEVICE = "cuda:0" def main(): print("\n=== Testing Medical Image Training Pipeline ===\n") # 1. Test dataset print("1. Loading dataset...") dataset = OCTA500Dataset(DATA_ROOT, resolution=256, split='train', max_samples=100) dataloader = DataLoader(dataset, batch_size=BATCH_SIZE, shuffle=True, num_workers=2) print(f" Dataset size: {len(dataset)}") # Get a batch batch = next(iter(dataloader)) images, labels, metadata = batch masks = metadata['mask'] raw_images = metadata['raw_image'] print(f" Images shape: {images.shape}, range: [{images.min():.2f}, {images.max():.2f}]") print(f" Masks shape: {masks.shape}, range: [{masks.min():.2f}, {masks.max():.2f}]") print(f" Raw images shape: {raw_images.shape}") # 2. Test model print("\n2. Creating model...") model = JiTMedical_B_16(input_size=256, num_classes=1).to(DEVICE) print(f" Model parameters: {sum(p.numel() for p in model.parameters()) / 1e6:.2f}M") # 3. Test LPIPS print("\n3. Loading LPIPS...") lpips_fn = lpips.LPIPS(net='vgg').to(DEVICE).eval() print(" LPIPS loaded!") # 4. Test scheduler print("\n4. Creating scheduler...") scheduler = LinearScheduler() # 5. Test training step print("\n5. Testing training steps...") optimizer = torch.optim.AdamW(model.parameters(), lr=1e-4) for step in range(NUM_STEPS): # Get batch images, labels, metadata = next(iter(dataloader)) images = images.to(DEVICE) masks = metadata['mask'].to(DEVICE) labels = labels.to(DEVICE) # Sample timesteps batch_size = images.shape[0] t = torch.rand(batch_size, device=DEVICE) # Add noise noise = torch.randn_like(images) alpha = scheduler.alpha(t) sigma = scheduler.sigma(t) x_t = alpha * images + noise * sigma # Forward pass pred = model(x_t, t, labels, mask=masks) # Compute losses v_t = (images - x_t) / (1 - t.view(-1, 1, 1, 1)).clamp_min(0.05) pred_v = (pred - x_t) / (1 - t.view(-1, 1, 1, 1)).clamp_min(0.05) fm_loss = ((pred_v - v_t) ** 2).mean() lpips_loss = lpips_fn(pred, images).mean() loss = fm_loss + 0.1 * lpips_loss # Backward optimizer.zero_grad() loss.backward() optimizer.step() print(f" Step {step+1}/{NUM_STEPS}: fm_loss={fm_loss.item():.4f}, lpips_loss={lpips_loss.item():.4f}, total={loss.item():.4f}") print("\n=== All tests PASSED! ===") print("\nReady for full training with:") print(" python main.py fit -c ./configs_medical/PixelGen_Medical_B16.yaml") if __name__ == "__main__": main()