""" V4: Test-Time Self-Consistency. For each validation image: 1. S(I) -> P_direct (standard segmentation) 2. Binarize P_direct -> M0 3. G(M0, z_1..z_N) -> generate N views 4. S(view_i) -> P_i for each view 5. P_ensemble = mean(sigmoid(P_i)) 6. P_combined = alpha * P_direct + (1-alpha) * P_ensemble Compares: direct, ensemble, combined strategies. Usage: python scripts/v4_test_time.py --condition cycle_consist --seed 42 python scripts/v4_test_time.py --condition baseline --seed 42 """ import sys sys.path.insert(0, "/data/sichengli/Code/PixelGen") import argparse import os import json import random import numpy as np import torch import torch.nn.functional as F from torch.utils.data import Dataset, DataLoader from PIL import Image import torchvision.transforms as transforms import torchvision.transforms.functional as TF import segmentation_models_pytorch as smp from src.models.transformer.JiT_medical import JiTMedical from segmentation.metrics import compute_dice_iou_binary, MetricTracker # ─── Config ─────────────────────────────────────────────────────────── KVASIR_ROOT = "/data2/sichengli/Data/test/Segmentation/Kvasir-SEG/Kvasir-SEG" WORK_DIR = "/data/sichengli/Code/PixelGen/synergy_v4_workdir" PIXELGEN_CKPT = "/data/sichengli/Code/PixelGen/medical_workdirs/exp_PixelGen_Medical_Kvasir/epoch=12499-step=100000.ckpt" RESOLUTION = 256 TRAIN_RATIO = 0.9 SPLIT_SEED = 42 IMAGENET_MEAN = [0.485, 0.456, 0.406] IMAGENET_STD = [0.229, 0.224, 0.225] MODEL_KWARGS = dict( input_size=256, patch_size=16, in_channels=3, hidden_size=768, depth=12, num_heads=12, mlp_ratio=4.0, attn_drop=0.0, proj_drop=0.1, num_classes=1, use_bottleneck=True, bottleneck_dim=128, in_context_len=32, in_context_start=4, mask_in_channels=1, mask_mode="spatial" ) NUM_STEPS = 50 CFG_SCALE = 2.0 # ─── Dataset ────────────────────────────────────────────────────────── class KvasirValDataset(Dataset): """Kvasir validation set (100 images).""" def __init__(self): self.normalize = transforms.Normalize(mean=IMAGENET_MEAN, std=IMAGENET_STD) img_dir = os.path.join(KVASIR_ROOT, "images") mask_dir = os.path.join(KVASIR_ROOT, "masks") all_files = sorted([ f for f in os.listdir(img_dir) if f.endswith((".jpg", ".png", ".jpeg")) ]) random.seed(SPLIT_SEED) indices = list(range(len(all_files))) random.shuffle(indices) split_idx = int(len(indices) * TRAIN_RATIO) val_indices = indices[split_idx:] self.files = [all_files[i] for i in sorted(val_indices)] self.img_dir = img_dir self.mask_dir = mask_dir print(f"[KvasirValDataset] {len(self.files)} validation samples") def __len__(self): return len(self.files) def __getitem__(self, idx): fname = self.files[idx] image = Image.open(os.path.join(self.img_dir, fname)).convert("RGB") mask = Image.open(os.path.join(self.mask_dir, fname)).convert("L") image = TF.resize(image, (RESOLUTION, RESOLUTION), interpolation=transforms.InterpolationMode.BILINEAR) mask = TF.resize(mask, (RESOLUTION, RESOLUTION), interpolation=transforms.InterpolationMode.NEAREST) image_tensor = self.normalize(TF.to_tensor(image)) mask_np = np.array(mask) mask_np = (mask_np > 127).astype(np.float32) mask_tensor = torch.from_numpy(mask_np).unsqueeze(0) return image_tensor, mask_tensor # ─── PixelGen Sampling ──────────────────────────────────────────────── def shift_respace_fn(t, shift=1.0): return t / (t + (1 - t) * shift) @torch.no_grad() def sample_batch_cfg(model, noise, mask, num_steps=50, cfg_scale=2.0, t_eps=0.05): """Euler ODE sampler with CFG.""" batch_size = noise.shape[0] timesteps = torch.linspace(0.0, 1 - 1.0 / num_steps, num_steps) timesteps = torch.cat([timesteps, torch.tensor([1.0])], dim=0) timesteps = shift_respace_fn(timesteps, 1.0).to(noise.device) y = torch.zeros(batch_size, dtype=torch.long, device=noise.device) x = noise for i in range(len(timesteps) - 1): t_cur = timesteps[i] t_next = timesteps[i + 1] dt = t_next - t_cur t_batch = t_cur.repeat(batch_size) cfg_x = torch.cat([x, x], dim=0) cfg_t = t_batch.repeat(2) cfg_y = torch.cat([y, y], dim=0) cfg_mask = torch.cat([torch.zeros_like(mask), mask], dim=0) pred = model(cfg_x, cfg_t, cfg_y, mask=cfg_mask) pred_v = (pred - cfg_x) / (1.0 - cfg_t.view(-1, 1, 1, 1)).clamp_min(t_eps) v_uncond, v_cond = pred_v.chunk(2) v = v_uncond + cfg_scale * (v_cond - v_uncond) x = x + v * dt return x def load_pixelgen(ckpt_path, device): ckpt = torch.load(ckpt_path, map_location="cpu", weights_only=False) state_dict = ckpt["state_dict"] ema_state = {} for k, v in state_dict.items(): if k.startswith("ema_denoiser."): new_k = k.replace("ema_denoiser.", "").replace("_orig_mod.", "") ema_state[new_k] = v model = JiTMedical(**MODEL_KWARGS) result = model.load_state_dict(ema_state, strict=False) print(f"PixelGen loaded ({len(ema_state)} keys), missing: {result.missing_keys}, unexpected: {result.unexpected_keys}") model = model.to(device).eval().to(torch.float32) return model def load_segmentor(condition, seed, device): ckpt_path = os.path.join(WORK_DIR, "checkpoints", f"{condition}_seed{seed}", "best.pth") model = smp.Unet( encoder_name="resnet34", encoder_weights="imagenet", in_channels=3, classes=1, ) ckpt = torch.load(ckpt_path, map_location="cpu", weights_only=False) model.load_state_dict(ckpt["model_state_dict"]) model = model.to(device).eval() print(f"Segmentor loaded: {ckpt_path} (best_dice={ckpt['best_dice']:.4f})") return model # ─── Test-Time Self-Consistency ─────────────────────────────────────── @torch.no_grad() def test_time_consistency(segmentor, pixelgen, val_loader, device, n_views=5, alpha=0.5): """ For each val image: direct: S(I) ensemble: mean(S(G(S(I)->M0, z_i))) for i=1..n_views combined: alpha * direct + (1-alpha) * ensemble """ normalize = transforms.Normalize(mean=IMAGENET_MEAN, std=IMAGENET_STD) tracker_direct = MetricTracker() tracker_ensemble = MetricTracker() tracker_combined = MetricTracker() for batch_idx, (images, gt_masks) in enumerate(val_loader): images = images.to(device) gt_masks = gt_masks.to(device) bs = images.shape[0] # Step 1: Direct prediction logits_direct = segmentor(images) p_direct = torch.sigmoid(logits_direct) # [B, 1, H, W] dice_d, iou_d = compute_dice_iou_binary(logits_direct, gt_masks) tracker_direct.update(dice_d, iou_d, bs) # Step 2: Binarize -> M0 (for PixelGen, mask in [0, 1]) m0 = (p_direct > 0.5).float() # [B, 1, H, W] # Step 3: Generate N views and re-segment ensemble_probs = torch.zeros_like(p_direct) # [B, 1, H, W] for v in range(n_views): noise = torch.randn(bs, 3, RESOLUTION, RESOLUTION, device=device) gen_images = sample_batch_cfg(pixelgen, noise, m0, NUM_STEPS, CFG_SCALE) gen_images = gen_images.clamp(-1, 1) * 0.5 + 0.5 # [-1,1] -> [0,1] # Normalize for segmentor gen_normalized = torch.stack([normalize(img) for img in gen_images]) logits_v = segmentor(gen_normalized) p_v = torch.sigmoid(logits_v) ensemble_probs += p_v ensemble_probs /= n_views # [B, 1, H, W] # Evaluate ensemble ensemble_preds = (ensemble_probs > 0.5).float() smooth = 1e-6 inter_e = (ensemble_preds.view(bs, -1) * gt_masks.view(bs, -1)).sum(1) pred_sum_e = ensemble_preds.view(bs, -1).sum(1) gt_sum_e = gt_masks.view(bs, -1).sum(1) dice_e = ((2 * inter_e + smooth) / (pred_sum_e + gt_sum_e + smooth)).mean().item() iou_e = ((inter_e + smooth) / (pred_sum_e + gt_sum_e - inter_e + smooth)).mean().item() tracker_ensemble.update(dice_e, iou_e, bs) # Combined p_combined = alpha * p_direct + (1 - alpha) * ensemble_probs combined_preds = (p_combined > 0.5).float() inter_c = (combined_preds.view(bs, -1) * gt_masks.view(bs, -1)).sum(1) pred_sum_c = combined_preds.view(bs, -1).sum(1) gt_sum_c = gt_masks.view(bs, -1).sum(1) dice_c = ((2 * inter_c + smooth) / (pred_sum_c + gt_sum_c + smooth)).mean().item() iou_c = ((inter_c + smooth) / (pred_sum_c + gt_sum_c - inter_c + smooth)).mean().item() tracker_combined.update(dice_c, iou_c, bs) print(f" Batch {batch_idx+1}/{len(val_loader)} | " f"Direct: {dice_d:.4f} | Ensemble: {dice_e:.4f} | Combined: {dice_c:.4f}") return { "direct": {"dice": tracker_direct.avg_dice, "iou": tracker_direct.avg_iou}, "ensemble": {"dice": tracker_ensemble.avg_dice, "iou": tracker_ensemble.avg_iou}, "combined": {"dice": tracker_combined.avg_dice, "iou": tracker_combined.avg_iou}, } # ─── Main ───────────────────────────────────────────────────────────── def main(): parser = argparse.ArgumentParser() parser.add_argument("--condition", type=str, default="cycle_consist", choices=["no_aug", "baseline", "cycle", "consist", "cycle_consist"]) parser.add_argument("--seed", type=int, default=42) parser.add_argument("--n_views", type=int, default=5) parser.add_argument("--alpha", type=float, default=0.5) parser.add_argument("--gpu", type=int, default=0) args = parser.parse_args() device = torch.device(f"cuda:{args.gpu}") print(f"\n{'='*60}") print(f" V4 Test-Time Self-Consistency") print(f" Condition: {args.condition}, Seed: {args.seed}") print(f" N_views: {args.n_views}, Alpha: {args.alpha}") print(f"{'='*60}\n") # Load models segmentor = load_segmentor(args.condition, args.seed, device) pixelgen = load_pixelgen(PIXELGEN_CKPT, device) # Load validation set val_dataset = KvasirValDataset() val_loader = DataLoader(val_dataset, batch_size=4, shuffle=False, num_workers=4, pin_memory=True) # Run test-time consistency results = test_time_consistency( segmentor, pixelgen, val_loader, device, n_views=args.n_views, alpha=args.alpha ) # Print results print(f"\n{'='*60}") print(f" TEST-TIME SELF-CONSISTENCY RESULTS") print(f" Condition: {args.condition}, Seed: {args.seed}") print(f"{'='*60}") print(f"{'Strategy':<12s} | {'Dice':>8s} | {'IoU':>8s}") print("-" * 35) for strategy in ["direct", "ensemble", "combined"]: r = results[strategy] print(f"{strategy:<12s} | {r['dice']:>8.4f} | {r['iou']:>8.4f}") print("=" * 35) # Save results output = { "condition": args.condition, "seed": args.seed, "n_views": args.n_views, "alpha": args.alpha, "results": results, } out_path = os.path.join(WORK_DIR, "test_time_results.json") # Merge with existing all_results = {} if os.path.exists(out_path): with open(out_path, "r") as f: all_results = json.load(f) key = f"{args.condition}_seed{args.seed}" all_results[key] = output with open(out_path, "w") as f: json.dump(all_results, f, indent=2) print(f"\nResults saved: {out_path}") if __name__ == "__main__": main()