# Unified Evaluation Script for Medical Image Segmentation # Loads best checkpoint and computes Dice + IoU on val set import os import argparse import torch import numpy as np from torch.utils.data import DataLoader import segmentation_models_pytorch as smp from models.transunet.vit_seg_modeling import VisionTransformer as ViT_seg from models.transunet.vit_seg_modeling import CONFIGS as CONFIGS_ViT_seg from datasets import SegmentationDataset, get_dataset_config from metrics import compute_dice_iou_binary, compute_dice_iou_multiclass, MetricTracker def parse_args(): parser = argparse.ArgumentParser(description='Evaluate Segmentation Models') parser.add_argument('--dataset', type=str, required=True, choices=['cvc', 'kvasir', 'refuge2', 'all']) parser.add_argument('--model', type=str, required=True, choices=['unet', 'transunet', 'all']) parser.add_argument('--resolution', type=int, default=224) parser.add_argument('--batch_size', type=int, default=16) parser.add_argument('--num_workers', type=int, default=4) parser.add_argument('--gpu', type=int, default=0) parser.add_argument('--seed', type=int, default=42) parser.add_argument('--save_dir', type=str, default='checkpoints') return parser.parse_args() def build_unet(task, num_classes): if task == 'binary': return smp.Unet(encoder_name='resnet34', encoder_weights=None, in_channels=3, classes=1) else: return smp.Unet(encoder_name='resnet34', encoder_weights=None, in_channels=3, classes=num_classes) def build_transunet(task, num_classes, resolution): vit_config = CONFIGS_ViT_seg['R50-ViT-B_16'] grid_size = resolution // 16 vit_config.patches.grid = (grid_size, grid_size) if task == 'binary': vit_config.n_classes = 1 else: vit_config.n_classes = num_classes return ViT_seg(vit_config, img_size=resolution, num_classes=vit_config.n_classes) @torch.no_grad() def evaluate(model, loader, device, task, num_classes): model.eval() tracker = MetricTracker() all_per_class_dice = {} all_per_class_iou = {} for images, masks in loader: images = images.to(device) masks = masks.to(device) logits = model(images) if task == 'binary': dice, iou = compute_dice_iou_binary(logits, masks) else: dice, iou, pcd, pci = compute_dice_iou_multiclass( logits, masks, num_classes=num_classes) for c in pcd: all_per_class_dice.setdefault(c, []).append(pcd[c]) all_per_class_iou.setdefault(c, []).append(pci[c]) tracker.update(dice, iou, images.size(0)) results = { 'dice': tracker.avg_dice, 'iou': tracker.avg_iou, } if task == 'multiclass': for c in all_per_class_dice: results[f'dice_class{c}'] = np.mean(all_per_class_dice[c]) results[f'iou_class{c}'] = np.mean(all_per_class_iou[c]) return results def eval_one(dataset_name, model_name, args, device): cfg = get_dataset_config(dataset_name) task = cfg['task'] num_classes = cfg['num_classes'] # Dataset: REFUGE2 uses official test set, others use val split eval_split = 'test' if dataset_name == 'refuge2' else 'val' val_dataset = SegmentationDataset(dataset_name, split=eval_split, resolution=args.resolution, seed=args.seed) val_loader = DataLoader(val_dataset, batch_size=args.batch_size, shuffle=False, num_workers=args.num_workers, pin_memory=True) # Model ckpt_path = os.path.join(args.save_dir, f'{model_name}_{dataset_name}', 'best.pth') if not os.path.exists(ckpt_path): print(f" [SKIP] Checkpoint not found: {ckpt_path}") return None if model_name == 'unet': model = build_unet(task, num_classes) else: model = build_transunet(task, num_classes, args.resolution) ckpt = torch.load(ckpt_path, map_location='cpu', weights_only=False) model.load_state_dict(ckpt['model_state_dict']) model = model.to(device) results = evaluate(model, val_loader, device, task, num_classes) results['epoch'] = ckpt.get('epoch', '?') return results def main(): args = parse_args() device = torch.device(f'cuda:{args.gpu}') datasets = ['cvc', 'kvasir', 'refuge2'] if args.dataset == 'all' else [args.dataset] models = ['unet', 'transunet'] if args.model == 'all' else [args.model] print(f"\n{'='*70}") print(f"Medical Image Segmentation Evaluation") print(f"{'='*70}") all_results = [] for ds in datasets: cfg = get_dataset_config(ds) for md in models: print(f"\n--- {cfg['name']} / {md.upper()} ---") results = eval_one(ds, md, args, device) if results is not None: all_results.append((ds, md, results)) print(f" Dice: {results['dice']:.4f} IoU: {results['iou']:.4f} " f"(epoch {results['epoch']})") if cfg['task'] == 'multiclass': for c in range(1, cfg['num_classes']): dk = f'dice_class{c}' ik = f'iou_class{c}' if dk in results: class_names = {1: 'Optic Cup', 2: 'Optic Disc'} name = class_names.get(c, f'Class {c}') print(f" {name}: Dice={results[dk]:.4f} IoU={results[ik]:.4f}") # Summary table if len(all_results) > 1: print(f"\n{'='*70}") print(f"{'Dataset':<15} {'Model':<12} {'Dice':<10} {'IoU':<10}") print(f"{'-'*70}") for ds, md, res in all_results: cfg = get_dataset_config(ds) print(f"{cfg['name']:<15} {md.upper():<12} {res['dice']:<10.4f} {res['iou']:<10.4f}") print(f"{'='*70}") if __name__ == '__main__': main()