#!/usr/bin/env python3 """Background watcher for the Kermany FM generation pipeline on h800.""" from __future__ import annotations import json import os import re import subprocess import time import urllib.request from pathlib import Path ROOT = Path("/data/temp/qinshengqian/c3") DOWN = ROOT / "kermany_downstream" BASE = Path( "/mnt/tidal-alsh-share2/dataset/qinshengqian/research/c3/Data/Classification/" "OCT_8/Baseline/RAE-main" ) RESULTS = BASE / "results_kermany" LOGDIR = RESULTS / "logs" JSONS = DOWN / "jsons" EVAL = DOWN / "eval" STATUS = DOWN / "auto_monitor_status.json" STATE_PATH = DOWN / "auto_monitor_state.json" LOG_PATH = DOWN / "auto_monitor.log" PID_PATH = DOWN / "auto_monitor.pid" ARMS = ["RETFound", "VisionFM", "DINOv2L", "MAEL"] EXPECTED_DOWNSTREAM = 12 INTERVAL = int(os.environ.get("KERMANY_MONITOR_INTERVAL", "600")) STOP_ON_DONE = os.environ.get("KERMANY_MONITOR_STOP_ON_DONE", "1") == "1" ERROR_PATTERNS = [ "Traceback", "RuntimeError", "ChildFailedError", "CUDA out of memory", "No such file or directory", "EnvironmentNameNotFound", "ModuleNotFoundError", "AssertionError", "ValueError", ] def run(cmd: str, timeout: int = 15) -> str: try: return subprocess.check_output( cmd, shell=True, stderr=subprocess.STDOUT, text=True, timeout=timeout ) except subprocess.CalledProcessError as exc: return exc.output or "" except subprocess.TimeoutExpired as exc: return (exc.output or "") + "\n[TIMEOUT]" def log(msg: str) -> None: ts = time.strftime("%Y-%m-%d %H:%M:%S") LOG_PATH.parent.mkdir(parents=True, exist_ok=True) with LOG_PATH.open("a") as f: f.write(f"[{ts}] {msg}\n") def load_state() -> dict: if STATE_PATH.exists(): try: return json.loads(STATE_PATH.read_text()) except Exception: return {} return {} def save_state(state: dict) -> None: STATE_PATH.parent.mkdir(parents=True, exist_ok=True) STATE_PATH.write_text(json.dumps(state, indent=2, ensure_ascii=False)) def send_feishu(title: str, body: str, color: str = "blue") -> None: cfg_path = Path.home() / ".codex" / "feishu.json" if not cfg_path.exists(): return try: cfg = json.loads(cfg_path.read_text()) except Exception: return if cfg.get("mode") in (None, "off"): return webhook = cfg.get("webhook_url") if not webhook: return payload = { "msg_type": "interactive", "card": { "header": {"title": {"tag": "plain_text", "content": title}, "template": color}, "elements": [{"tag": "markdown", "content": body[:5000]}], }, } try: req = urllib.request.Request( webhook, data=json.dumps(payload).encode(), headers={"Content-Type": "application/json"}, ) urllib.request.urlopen(req, timeout=8).read() except Exception as exc: log(f"feishu notification failed: {exc}") def count_lines(path: Path) -> int: if not path.exists(): return 0 with path.open(errors="ignore") as f: return max(sum(1 for _ in f) - 1, 0) def parse_latest_progress(path: Path) -> dict: if not path.exists(): return {} text = run(f"tail -2000 {path}", timeout=10) matches = re.findall(r"\[Epoch (\d+) \| Step (\d+)\]", text) if not matches: return {} epoch, step = matches[-1] return {"epoch": int(epoch), "step": int(step)} def collect_status() -> dict: procs = run( "ps -eo pid,etime,stat,cmd | grep -E " "'run_kermany_fm_pipeline|train_stage1.py|calculate_stat.py|src/train.py|" "kermany_dose_rn50|kermany_fm_sample|evaluate_quality' | grep -v grep || true" ) gpu = run( "nvidia-smi --query-gpu=index,memory.used,memory.total,utilization.gpu " "--format=csv,noheader,nounits 2>/dev/null || true" ) arms = {} for arm in ARMS: stage1_ckpt = RESULTS / "stage1" / f"stage1_{arm}" / "checkpoints" / "ep-last.pt" stat_file = RESULTS / "stats" / arm / "normalization_stats.pt" stage2_ckpt = RESULTS / "stage2" / f"stage2_{arm}" / "checkpoints" / "ep-last.pt" synth_csv = DOWN / "synth" / arm / "synth.csv" eval_json = EVAL / f"{arm}.json" dose = list(JSONS.glob(f"C-{arm}_d*.json")) full = list(JSONS.glob(f"C-{arm}_full_s*.json")) arms[arm] = { "stage1_done": stage1_ckpt.exists(), "stage1_progress": parse_latest_progress(LOGDIR / f"stage1_{arm}.log"), "stats_done": stat_file.exists(), "stage2_done": stage2_ckpt.exists(), "stage2_progress": parse_latest_progress(LOGDIR / f"stage2_{arm}.log"), "synth_rows": count_lines(synth_csv), "eval_done": eval_json.exists(), "downstream_json": len(dose) + len(full), } sdvae_json = len(list(JSONS.glob("C-sdvae_d*.json"))) + len( list(JSONS.glob("C-sdvae_full_s*.json")) ) status = { "time": time.strftime("%Y-%m-%d %H:%M:%S"), "sdvae_done": (DOWN / "SDVAE_COMPLETION_DONE").exists(), "fm_done": (DOWN / "FM_PIPELINE_DONE").exists(), "sdvae_json": sdvae_json, "a_json": len(list(JSONS.glob("A_d*.json"))), "a_full_json": len(list(JSONS.glob("A_full_s*.json"))), "arms": arms, "process_lines": [line for line in procs.splitlines() if line.strip()], "gpu": [line for line in gpu.splitlines() if line.strip()], } return status def summarize(status: dict) -> str: parts = [] for arm, item in status["arms"].items(): if item["downstream_json"] >= EXPECTED_DOWNSTREAM: stage = "downstream_done" elif item["synth_rows"] >= 8000: stage = "downstream" elif item["stage2_done"]: stage = "sample_eval" elif item["stats_done"]: stage = "stage2" elif item["stage1_done"]: stage = "stats" else: prog = item.get("stage1_progress") or {} if prog: stage = f"stage1_e{prog.get('epoch')}_s{prog.get('step')}" else: stage = "stage1_starting" parts.append(f"{arm}:{stage}") return "; ".join(parts) def scan_new_errors(state: dict) -> list[str]: offsets = state.setdefault("log_offsets", {}) files = [ DOWN / "kermany_fm_pipeline.log", DOWN / "sdvae_completion.log", ] files.extend(LOGDIR.glob("*.log")) files.extend((DOWN / "logs").glob("*.log")) errors: list[str] = [] for path in files: try: size = path.stat().st_size except FileNotFoundError: continue key = str(path) old = int(offsets.get(key, size)) if size < old: old = 0 if size > old: with path.open("r", errors="ignore") as f: f.seek(old) text = f.read(2_000_000) for line in text.splitlines(): if any(pat in line for pat in ERROR_PATTERNS): errors.append(f"{path.name}: {line[-500:]}") offsets[key] = size return errors[:20] def main() -> None: DOWN.mkdir(parents=True, exist_ok=True) PID_PATH.write_text(str(os.getpid())) state = load_state() if not state: state = {"started_at": time.time(), "log_offsets": {}} scan_new_errors(state) save_state(state) log("monitor started") send_feishu("Kermany Monitor Started", "Kermany pipeline watcher is active.", "blue") while True: status = collect_status() summary = summarize(status) status["summary"] = summary errors = scan_new_errors(state) status["new_errors"] = errors STATUS.write_text(json.dumps(status, indent=2, ensure_ascii=False)) last_summary = state.get("last_summary") last_done = state.get("last_done", False) if errors: log("ERRORS: " + " | ".join(errors[:3])) send_feishu("Kermany Pipeline Error", "\n".join(errors[:10]), "red") if summary != last_summary: log(f"progress: {summary}") send_feishu("Kermany Pipeline Progress", summary, "blue") state["last_summary"] = summary if status["fm_done"] and not last_done: body = "FM pipeline complete.\n\n" + summary log("FM pipeline complete") send_feishu("Kermany Pipeline Complete", body, "green") state["last_done"] = True save_state(state) if STOP_ON_DONE: break save_state(state) time.sleep(INTERVAL) if __name__ == "__main__": main()