AutoencoderDataset / split_smi.sh
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Splitting large SMILES files @1GB size
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#!/bin/bash
file="$1"
max_size_mb="${2:-1024}" # Default to 1024 MB if not specified
dir=$(dirname "$file")
base=$(basename "$file" .smi)
size_bytes=$((max_size_mb * 1024 * 1024))
file_size=$(stat -c%s "$file")
if [ "$file_size" -gt "$size_bytes" ]; then
if split -C "${max_size_mb}M" --numeric-suffixes=1 --additional-suffix=.smi "$file" "${dir}/${base}.part"; then
rm "$file"
echo "Split $file and removed original"
else
echo "Error splitting $file. Original file kept."
fi
else
echo "$file is smaller than ${max_size_mb}MB, not splitting"
fi