Parth1503 commited on
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1 Parent(s): c2bee13

Merged masks: TL precedence on overlap, matching the authors' converter

Browse files
README.md CHANGED
@@ -13,58 +13,6 @@ tags:
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  pretty_name: Aortic Dissection (Graz) - true/false lumen CTA
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  size_categories:
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  - n<1K
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- configs:
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- - config_name: preview
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- data_files:
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- - split: train
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- path: preview/train-*
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- dataset_info:
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- config_name: preview
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- features:
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- - name: case_id
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- dtype: string
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- - name: case_num
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- dtype: int32
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- - name: image
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- dtype: image
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- - name: mask
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- dtype: image
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- - name: overlay
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- dtype: image
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- - name: slice_index
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- dtype: int32
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- - name: slice_axis
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- dtype: int32
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- - name: n_slices
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- dtype: int32
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- - name: shape
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- dtype: string
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- - name: spacing_mm
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- dtype: string
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- - name: tl_voxels
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- dtype: int64
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- - name: fl_voxels
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- dtype: int64
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- - name: tl_volume_ml
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- dtype: float32
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- - name: fl_volume_ml
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- dtype: float32
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- - name: tl_fl_overlap_voxels
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- dtype: int64
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- - name: fl_label_value_raw
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- dtype: int32
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- - name: resampled_to_image_grid
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- dtype: bool
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- - name: annotator_tier
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- dtype: string
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- - name: split
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- dtype: string
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- splits:
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- - name: train
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- num_bytes: 6838450
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- num_examples: 40
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- download_size: 6853856
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- dataset_size: 6838450
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  ---
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  # Aortic Dissection (Graz) - CTA with true / false lumen expert annotations
@@ -136,10 +84,15 @@ masks ship under `original_masks/`.
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  **409 HU (TL) / 339 HU (FL)**, i.e. contrast-filled arterial lumen and in
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  line with the other 39 cases. Flagged by `resampled_to_image_grid`.
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  Every other case's masks already match their image exactly.
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- 3. **Merged `maskNN.nrrd` added**, painted TL first then FL, so **FL wins
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- ties**. Ties are negligible: 16 of 40 cases overlap by 1-106 voxels, at most
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- **0.028%** of the TL-or-FL union - flap-boundary jitter, not a nested
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- structure. The two binaries remain available if you prefer to fan out.
 
 
 
 
 
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  Deliberately **not** changed: no reorientation, no resampling of the other 39
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  cases, no intensity windowing, original filenames kept.
 
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  pretty_name: Aortic Dissection (Graz) - true/false lumen CTA
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  size_categories:
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  - n<1K
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  ---
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  # Aortic Dissection (Graz) - CTA with true / false lumen expert annotations
 
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  **409 HU (TL) / 339 HU (FL)**, i.e. contrast-filled arterial lumen and in
85
  line with the other 39 cases. Flagged by `resampled_to_image_grid`.
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  Every other case's masks already match their image exactly.
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+ 3. **Merged `maskNN.nrrd` added**, painted FL first then TL, so the **true
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+ lumen wins ties** - matching the authors' own converter
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+ [`apepe91/AD_NRRD_TO_STL`](https://github.com/apepe91/AD_NRRD_TO_STL) (cited
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+ in the paper's Code Availability), which subtracts a dilated true lumen from
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+ the false lumen. Ties are negligible either way: 16 of 40 cases overlap by
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+ 1-106 voxels, at most **0.028%** of the TL-or-FL union - flap-boundary
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+ jitter, not a nested structure. Because ties are resolved, the stored map is
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+ strictly disjoint, so `mask == 1` / `mask == 2` are exact. The two source
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+ binaries remain available if you prefer to fan out.
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  Deliberately **not** changed: no reorientation, no resampling of the other 39
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  cases, no intensity windowing, original filenames kept.
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