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Datasets:
MedOtter
/
TCGA-Breast-Radiogenomics

Tasks:
Image Segmentation
Modalities:
Image
Text
Formats:
parquet
Size:
< 1K
Tags:
medical
mri
dce-mri
breast
breast-cancer
tumor-segmentation
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TCGA-Breast-Radiogenomics
File size: 90,834 Bytes
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{"patient_id": "TCGA-AO-A03M", "tcga_patient_barcode": "TCGA-AO-A03M", "image": "volumes/TCGA-AO-A03M/image.nii.gz", "mask": "volumes/TCGA-AO-A03M/mask.nii.gz", "split": "train", "num_slices": 50, "rows": 256, "cols": 256, "spacing_xyz": [0.8594, 0.8594, 3.0], "slice_thickness": 3.0, "tumor_voxels": 1417, "tumor_slices": 7, "tumor_slice_range": [23, 29], "series_description": "Bind(11251/7/97..146)", "series_uid": "1.3.6.1.4.1.14519.5.2.1.9203.4002.248253412869892897948991929221", "n_phases": 1, "phase_index": 0, "manufacturer": "GE MEDICAL SYSTEMS", "field_strength": 1.5, "repetition_time": 6.34, "echo_time": 3.096, "breast_side": "Left", "birads_shape": "Round-Oval", "birads_margin": "Circumscribed", "birads_internal_enhancement": "Homogeneous", "birads_fibroglandular": "Extreme FGT", "birads_background_enhancement": "Moderate", "tissue_source_site": "Memorial Sloan Kettering", "tss_code": "AO", "in_bcss": false, "series_reassigned": false, "lesion_contrast": 0.4357}
{"patient_id": "TCGA-AO-A03V", "tcga_patient_barcode": "TCGA-AO-A03V", "image": "volumes/TCGA-AO-A03V/image.nii.gz", "mask": "volumes/TCGA-AO-A03V/mask.nii.gz", "split": "train", "num_slices": 48, "rows": 256, "cols": 256, "spacing_xyz": [0.7813, 0.7813, 3.0], "slice_thickness": 3.0, "tumor_voxels": 613, "tumor_slices": 4, "tumor_slice_range": [31, 34], "series_description": "T1 Sagittal post fat sat", "series_uid": "1.3.6.1.4.1.14519.5.2.1.9203.4002.301602258207095084610044790621", "n_phases": 1, "phase_index": 0, "manufacturer": "GE MEDICAL SYSTEMS", "field_strength": 1.5, "repetition_time": 6.808, "echo_time": 4.2, "breast_side": "Left", "birads_shape": "Round-Oval", "birads_margin": "Not Circumscribed - irregular", "birads_internal_enhancement": "Heterogeneous", "birads_fibroglandular": "Heterogeneous FGT", "birads_background_enhancement": "Moderate", "tissue_source_site": "Memorial Sloan Kettering", "tss_code": "AO", "in_bcss": false, "series_reassigned": true, "lesion_contrast": 0.6167}
{"patient_id": "TCGA-AO-A0J9", "tcga_patient_barcode": "TCGA-AO-A0J9", "image": "volumes/TCGA-AO-A0J9/image.nii.gz", "mask": "volumes/TCGA-AO-A0J9/mask.nii.gz", "split": "train", "num_slices": 55, "rows": 256, "cols": 256, "spacing_xyz": [0.7813, 0.7813, 3.0], "slice_thickness": 3.0, "tumor_voxels": 4484, "tumor_slices": 14, "tumor_slice_range": [20, 33], "series_description": "Bind(15477/7/62..116)", "series_uid": "1.3.6.1.4.1.14519.5.2.1.9203.4002.866634835864508681925900088319", "n_phases": 1, "phase_index": 0, "manufacturer": "GE MEDICAL SYSTEMS", "field_strength": 1.5, "repetition_time": 6.464, "echo_time": 3.168, "breast_side": "Right", "birads_shape": "Irregular", "birads_margin": "Not Circumscribed - spiculated", "birads_internal_enhancement": "Homogeneous", "birads_fibroglandular": "Scattered FGT", "birads_background_enhancement": "Mild", "tissue_source_site": "Memorial Sloan Kettering", "tss_code": "AO", "in_bcss": false, "series_reassigned": false, "lesion_contrast": 1.4029}
{"patient_id": "TCGA-AO-A0JI", "tcga_patient_barcode": "TCGA-AO-A0JI", "image": "volumes/TCGA-AO-A0JI/image.nii.gz", "mask": "volumes/TCGA-AO-A0JI/mask.nii.gz", "split": "train", "num_slices": 56, "rows": 256, "cols": 256, "spacing_xyz": [0.7813, 0.7813, 3.0], "slice_thickness": 3.0, "tumor_voxels": 311, "tumor_slices": 4, "tumor_slice_range": [19, 22], "series_description": "Bind(18029/6/1..56)", "series_uid": "1.3.6.1.4.1.14519.5.2.1.9203.4002.115495544730113615407489736518", "n_phases": 1, "phase_index": 0, "manufacturer": "GE MEDICAL SYSTEMS", "field_strength": 1.5, "repetition_time": 7.252, "echo_time": 4.2, "breast_side": "Left", "birads_shape": "Round-Oval", "birads_margin": "Circumscribed", "birads_internal_enhancement": "Heterogeneous", "birads_fibroglandular": "Heterogeneous FGT", "birads_background_enhancement": "Marked", "tissue_source_site": "Memorial Sloan Kettering", "tss_code": "AO", "in_bcss": false, "series_reassigned": false, "lesion_contrast": 0.377}
{"patient_id": "TCGA-AO-A0JM", "tcga_patient_barcode": "TCGA-AO-A0JM", "image": "volumes/TCGA-AO-A0JM/image.nii.gz", "mask": "volumes/TCGA-AO-A0JM/mask.nii.gz", "split": "train", "num_slices": 51, "rows": 256, "cols": 256, "spacing_xyz": [0.78125, 0.78125, 3.0], "slice_thickness": 3.0, "tumor_voxels": 10764, "tumor_slices": 15, "tumor_slice_range": [19, 33], "series_description": null, "series_uid": "1.3.6.1.4.1.14519.5.2.1.9203.4002.302052236339784643236917769729", "n_phases": 1, "phase_index": 0, "manufacturer": "GE MEDICAL SYSTEMS", "field_strength": 1.5, "repetition_time": 6.472, "echo_time": 3.156, "breast_side": "Right", "birads_shape": "Round-Oval", "birads_margin": "Not Circumscribed - irregular", "birads_internal_enhancement": "Heterogeneous", "birads_fibroglandular": "Extreme FGT", "birads_background_enhancement": "Mild", "tissue_source_site": "Memorial Sloan Kettering", "tss_code": "AO", "in_bcss": false, "series_reassigned": false, "lesion_contrast": 0.9354}
{"patient_id": "TCGA-AO-A12D", "tcga_patient_barcode": "TCGA-AO-A12D", "image": "volumes/TCGA-AO-A12D/image.nii.gz", "mask": "volumes/TCGA-AO-A12D/mask.nii.gz", "split": "train", "num_slices": 53, "rows": 256, "cols": 256, "spacing_xyz": [0.78125, 0.78125, 3.0], "slice_thickness": 3.0, "tumor_voxels": 3839, "tumor_slices": 8, "tumor_slice_range": [18, 25], "series_description": null, "series_uid": "1.3.6.1.4.1.14519.5.2.1.9203.4002.585194947126021285136262380957", "n_phases": 1, "phase_index": 0, "manufacturer": "GE MEDICAL SYSTEMS", "field_strength": 1.5, "repetition_time": 6.392, "echo_time": 3.072, "breast_side": "Left", "birads_shape": "Round-Oval", "birads_margin": "Not Circumscribed - irregular", "birads_internal_enhancement": "Heterogeneous", "birads_fibroglandular": "Heterogeneous FGT", "birads_background_enhancement": "Moderate", "tissue_source_site": "Memorial Sloan Kettering", "tss_code": "AO", "in_bcss": false, "series_reassigned": false, "lesion_contrast": 0.8572}
{"patient_id": "TCGA-AO-A12E", "tcga_patient_barcode": "TCGA-AO-A12E", "image": "volumes/TCGA-AO-A12E/image.nii.gz", "mask": "volumes/TCGA-AO-A12E/mask.nii.gz", "split": "train", "num_slices": 56, "rows": 256, "cols": 256, "spacing_xyz": [0.78125, 0.78125, 3.0], "slice_thickness": 3.0, "tumor_voxels": 2353, "tumor_slices": 8, "tumor_slice_range": [20, 27], "series_description": null, "series_uid": "1.3.6.1.4.1.14519.5.2.1.9203.4002.319292959228403158736163175044", "n_phases": 1, "phase_index": 0, "manufacturer": "GE MEDICAL SYSTEMS", "field_strength": 1.5, "repetition_time": 6.392, "echo_time": 3.072, "breast_side": "Right", "birads_shape": "Irregular", "birads_margin": "Not Circumscribed - spiculated", "birads_internal_enhancement": "Not Applicable", "birads_fibroglandular": "Almost entirely fat", "birads_background_enhancement": "Moderate", "tissue_source_site": "Memorial Sloan Kettering", "tss_code": "AO", "in_bcss": false, "series_reassigned": false, "lesion_contrast": 1.0471}
{"patient_id": "TCGA-AO-A12F", "tcga_patient_barcode": "TCGA-AO-A12F", "image": "volumes/TCGA-AO-A12F/image.nii.gz", "mask": "volumes/TCGA-AO-A12F/mask.nii.gz", "split": "train", "num_slices": 52, "rows": 256, "cols": 256, "spacing_xyz": [0.78125, 0.78125, 3.0], "slice_thickness": 3.0, "tumor_voxels": 44942, "tumor_slices": 13, "tumor_slice_range": [25, 37], "series_description": "Bind(5647/7/53..104)", "series_uid": "1.3.6.1.4.1.14519.5.2.1.9203.4002.779357875825495663379704657008", "n_phases": 1, "phase_index": 0, "manufacturer": "GE MEDICAL SYSTEMS", "field_strength": 1.5, "repetition_time": 7.188, "echo_time": 2.444, "breast_side": "Right", "birads_shape": "Round-Oval", "birads_margin": "Circumscribed", "birads_internal_enhancement": "Heterogeneous", "birads_fibroglandular": "Extreme FGT", "birads_background_enhancement": "Marked", "tissue_source_site": "Memorial Sloan Kettering", "tss_code": "AO", "in_bcss": true, "series_reassigned": false, "lesion_contrast": 0.6908}
{"patient_id": "TCGA-AO-A12G", "tcga_patient_barcode": "TCGA-AO-A12G", "image": "volumes/TCGA-AO-A12G/image.nii.gz", "mask": "volumes/TCGA-AO-A12G/mask.nii.gz", "split": "train", "num_slices": 41, "rows": 256, "cols": 256, "spacing_xyz": [0.7031, 0.7031, 3.0], "slice_thickness": 3.0, "tumor_voxels": 1669, "tumor_slices": 6, "tumor_slice_range": [21, 26], "series_description": "T1 Sagittal post fat sat", "series_uid": "1.3.6.1.4.1.14519.5.2.1.9203.4002.193633202495121366688264168892", "n_phases": 1, "phase_index": 0, "manufacturer": "GE MEDICAL SYSTEMS", "field_strength": 1.5, "repetition_time": 6.252, "echo_time": 3.052, "breast_side": "Right", "birads_shape": "Round-Oval", "birads_margin": "Not Circumscribed - irregular", "birads_internal_enhancement": "Heterogeneous", "birads_fibroglandular": "Extreme FGT", "birads_background_enhancement": "Minimal", "tissue_source_site": "Memorial Sloan Kettering", "tss_code": "AO", "in_bcss": false, "series_reassigned": false, "lesion_contrast": 0.569}
{"patient_id": "TCGA-AR-A1AN", "tcga_patient_barcode": "TCGA-AR-A1AN", "image": "volumes/TCGA-AR-A1AN/image.nii.gz", "mask": "volumes/TCGA-AR-A1AN/mask.nii.gz", "split": "train", "num_slices": 108, "rows": 256, "cols": 256, "spacing_xyz": [0.78125, 0.78125, 3.0], "slice_thickness": 3.0, "tumor_voxels": 1234, "tumor_slices": 6, "tumor_slice_range": [76, 81], "series_description": "VIBRANT", "series_uid": "1.3.6.1.4.1.14519.5.2.1.3344.4002.381459025977840313499996691555", "n_phases": 4, "phase_index": 1, "manufacturer": "GE MEDICAL SYSTEMS", "field_strength": 1.5, "repetition_time": 6.468, "echo_time": 3.168, "breast_side": "Right", "birads_shape": "Round-Oval", "birads_margin": "Circumscribed", "birads_internal_enhancement": "Homogeneous", "birads_fibroglandular": "Extreme FGT", "birads_background_enhancement": "Not Applicable", "tissue_source_site": "Mayo Clinic", "tss_code": "AR", "in_bcss": false, "series_reassigned": false, "lesion_contrast": 0.5852}
{"patient_id": "TCGA-AR-A1AQ", "tcga_patient_barcode": "TCGA-AR-A1AQ", "image": "volumes/TCGA-AR-A1AQ/image.nii.gz", "mask": "volumes/TCGA-AR-A1AQ/mask.nii.gz", "split": "train", "num_slices": 116, "rows": 256, "cols": 256, "spacing_xyz": [0.859375, 0.859375, 3.0], "slice_thickness": 3.0, "tumor_voxels": 2742, "tumor_slices": 7, "tumor_slice_range": [78, 84], "series_description": "VIBRANT", "series_uid": "1.3.6.1.4.1.14519.5.2.1.3344.4002.176672261446738229459423756538", "n_phases": 4, "phase_index": 1, "manufacturer": "GE MEDICAL SYSTEMS", "field_strength": 1.5, "repetition_time": 7.7, "echo_time": 3.3, "breast_side": "Right", "birads_shape": "Round-Oval", "birads_margin": "Circumscribed", "birads_internal_enhancement": "Heterogeneous", "birads_fibroglandular": "Scattered FGT", "birads_background_enhancement": "Moderate", "tissue_source_site": "Mayo Clinic", "tss_code": "AR", "in_bcss": true, "series_reassigned": false, "lesion_contrast": 0.6793}
{"patient_id": "TCGA-AR-A1AX", "tcga_patient_barcode": "TCGA-AR-A1AX", "image": "volumes/TCGA-AR-A1AX/image.nii.gz", "mask": "volumes/TCGA-AR-A1AX/mask.nii.gz", "split": "train", "num_slices": 88, "rows": 256, "cols": 256, "spacing_xyz": [0.8594, 0.8594, 3.0], "slice_thickness": 3.0, "tumor_voxels": 1321, "tumor_slices": 8, "tumor_slice_range": [19, 26], "series_description": "VIBRANT", "series_uid": "1.3.6.1.4.1.14519.5.2.1.3344.4002.327670995378081964776130912424", "n_phases": 4, "phase_index": 1, "manufacturer": "GE MEDICAL SYSTEMS", "field_strength": 1.5, "repetition_time": 6.052, "echo_time": 2.94, "breast_side": "Left", "birads_shape": "Irregular", "birads_margin": "Not Circumscribed - irregular", "birads_internal_enhancement": "Homogeneous", "birads_fibroglandular": "Heterogeneous FGT", "birads_background_enhancement": "Moderate", "tissue_source_site": "Mayo Clinic", "tss_code": "AR", "in_bcss": false, "series_reassigned": true, "lesion_contrast": 0.9322}
{"patient_id": "TCGA-AR-A24S", "tcga_patient_barcode": "TCGA-AR-A24S", "image": "volumes/TCGA-AR-A24S/image.nii.gz", "mask": "volumes/TCGA-AR-A24S/mask.nii.gz", "split": "train", "num_slices": 88, "rows": 256, "cols": 256, "spacing_xyz": [0.703125, 0.703125, 3.0], "slice_thickness": 3.0, "tumor_voxels": 4036, "tumor_slices": 9, "tumor_slice_range": [65, 73], "series_description": "vibrant", "series_uid": "1.3.6.1.4.1.14519.5.2.1.3344.4002.610644283740923175408063590550", "n_phases": 4, "phase_index": 1, "manufacturer": "GE MEDICAL SYSTEMS", "field_strength": 1.5, "repetition_time": 7.772, "echo_time": 3.324, "breast_side": "Right", "birads_shape": "Irregular", "birads_margin": "Not Circumscribed - irregular", "birads_internal_enhancement": "Homogeneous", "birads_fibroglandular": "Heterogeneous FGT", "birads_background_enhancement": "Mild", "tissue_source_site": "Mayo Clinic", "tss_code": "AR", "in_bcss": false, "series_reassigned": true, "lesion_contrast": 1.2028}
{"patient_id": "TCGA-AR-A24X", "tcga_patient_barcode": "TCGA-AR-A24X", "image": "volumes/TCGA-AR-A24X/image.nii.gz", "mask": "volumes/TCGA-AR-A24X/mask.nii.gz", "split": "train", "num_slices": 96, "rows": 256, "cols": 256, "spacing_xyz": [0.703125, 0.703125, 3.0], "slice_thickness": 3.0, "tumor_voxels": 887, "tumor_slices": 6, "tumor_slice_range": [68, 73], "series_description": "VIBRANT", "series_uid": "1.3.6.1.4.1.14519.5.2.1.3344.4002.125436125349301426124708566981", "n_phases": 4, "phase_index": 1, "manufacturer": "GE MEDICAL SYSTEMS", "field_strength": 1.5, "repetition_time": 6.624, "echo_time": 3.256, "breast_side": "Right", "birads_shape": "Round-Oval", "birads_margin": "Not Circumscribed - irregular", "birads_internal_enhancement": "Homogeneous", "birads_fibroglandular": "Heterogeneous FGT", "birads_background_enhancement": "Moderate", "tissue_source_site": "Mayo Clinic", "tss_code": "AR", "in_bcss": false, "series_reassigned": true, "lesion_contrast": 0.6996}
{"patient_id": "TCGA-BH-A0AW", "tcga_patient_barcode": "TCGA-BH-A0AW", "image": "volumes/TCGA-BH-A0AW/image.nii.gz", "mask": "volumes/TCGA-BH-A0AW/mask.nii.gz", "split": "train", "num_slices": 88, "rows": 512, "cols": 512, "spacing_xyz": [0.6641, 0.6641, 2.0], "slice_thickness": 2.0, "tumor_voxels": 1849, "tumor_slices": 9, "tumor_slice_range": [46, 54], "series_description": "Ax Vibrant MULTIPHASE", "series_uid": "1.3.6.1.4.1.14519.5.2.1.6450.4002.137555579654325140828698314966", "n_phases": 5, "phase_index": 1, "manufacturer": "GE MEDICAL SYSTEMS", "field_strength": 1.5, "repetition_time": 4.892, "echo_time": 2.352, "breast_side": "Left", "birads_shape": "Round-Oval", "birads_margin": "Not Circumscribed - spiculated", "birads_internal_enhancement": "Heterogeneous", "birads_fibroglandular": "Scattered FGT", "birads_background_enhancement": "Mild", "tissue_source_site": "University of Pittsburgh", "tss_code": "BH", "in_bcss": false, "series_reassigned": false, "lesion_contrast": 1.1369}
{"patient_id": "TCGA-BH-A0AZ", "tcga_patient_barcode": "TCGA-BH-A0AZ", "image": "volumes/TCGA-BH-A0AZ/image.nii.gz", "mask": "volumes/TCGA-BH-A0AZ/mask.nii.gz", "split": "train", "num_slices": 82, "rows": 512, "cols": 512, "spacing_xyz": [0.5859, 0.5859, 2.0], "slice_thickness": 2.0, "tumor_voxels": 6982, "tumor_slices": 16, "tumor_slice_range": [33, 48], "series_description": "Ax Vibrant MULTIPHASE", "series_uid": "1.3.6.1.4.1.14519.5.2.1.6450.4002.235120945440804082065149219954", "n_phases": 5, "phase_index": 1, "manufacturer": "GE MEDICAL SYSTEMS", "field_strength": 1.5, "repetition_time": 5.028, "echo_time": 2.428, "breast_side": "Right", "birads_shape": "Irregular", "birads_margin": "Not Circumscribed - spiculated", "birads_internal_enhancement": "Heterogeneous", "birads_fibroglandular": "Heterogeneous FGT", "birads_background_enhancement": "Moderate", "tissue_source_site": "University of Pittsburgh", "tss_code": "BH", "in_bcss": false, "series_reassigned": false, "lesion_contrast": 1.4234}
{"patient_id": "TCGA-BH-A0B1", "tcga_patient_barcode": "TCGA-BH-A0B1", "image": "volumes/TCGA-BH-A0B1/image.nii.gz", "mask": "volumes/TCGA-BH-A0B1/mask.nii.gz", "split": "train", "num_slices": 90, "rows": 512, "cols": 512, "spacing_xyz": [0.6836, 0.6836, 2.0], "slice_thickness": 2.0, "tumor_voxels": 6448, "tumor_slices": 10, "tumor_slice_range": [51, 60], "series_description": "Ax Vibrant MULTIPHASE", "series_uid": "1.3.6.1.4.1.14519.5.2.1.6450.4002.333267840692745997187984677772", "n_phases": 5, "phase_index": 1, "manufacturer": "GE MEDICAL SYSTEMS", "field_strength": 1.5, "repetition_time": 5.5, "echo_time": 2.624, "breast_side": "Right", "birads_shape": "Irregular", "birads_margin": "Not Circumscribed - irregular", "birads_internal_enhancement": "Heterogeneous", "birads_fibroglandular": "Heterogeneous FGT", "birads_background_enhancement": "Marked", "tissue_source_site": "University of Pittsburgh", "tss_code": "BH", "in_bcss": false, "series_reassigned": false, "lesion_contrast": 1.3688}
{"patient_id": "TCGA-BH-A0B3", "tcga_patient_barcode": "TCGA-BH-A0B3", "image": "volumes/TCGA-BH-A0B3/image.nii.gz", "mask": "volumes/TCGA-BH-A0B3/mask.nii.gz", "split": "train", "num_slices": 82, "rows": 512, "cols": 512, "spacing_xyz": [0.5664, 0.5664, 2.0], "slice_thickness": 2.0, "tumor_voxels": 8618, "tumor_slices": 11, "tumor_slice_range": [36, 46], "series_description": "Ax Vibrant MULTIPHASE", "series_uid": "1.3.6.1.4.1.14519.5.2.1.6450.4002.145897582572955118810683903173", "n_phases": 5, "phase_index": 1, "manufacturer": "GE MEDICAL SYSTEMS", "field_strength": 1.5, "repetition_time": 5.676, "echo_time": 2.724, "breast_side": "Right", "birads_shape": "Irregular", "birads_margin": "Not Circumscribed - irregular", "birads_internal_enhancement": "Heterogeneous", "birads_fibroglandular": "Heterogeneous FGT", "birads_background_enhancement": "Mild", "tissue_source_site": "University of Pittsburgh", "tss_code": "BH", "in_bcss": true, "series_reassigned": false, "lesion_contrast": 1.0983}
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