ensemble-pipeline / scripts /meta_learner_inference.py
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inference: frozen-emb persistence + tokenize-once tokenisation
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#!/usr/bin/env python3
"""
Meta-Learner Inference Script
Loads a deployment config exported by meta_learner_trainer.py and runs
inference on new data.
Usage:
python meta_learner_inference.py \
--config meta_outputs/deployment/deployment_config.json \
--data_path new_data.parquet \
--text_col text \
--output_path predictions.parquet
The output parquet contains:
- All original columns from new_data.parquet
- predicted_label : string label (e.g. "NEAR")
- predicted_class : integer class index
- prob_{class} : softmax probability for each class
- meta_confidence : max probability (argmax confidence)
How base model inference works
-------------------------------
Each selected model has K fold checkpoints. All K are loaded and their
probability outputs are averaged before feeding to the meta-learner.
This matches training: the meta-learner was trained on OOF probs which
are averaged fold outputs. Using a single fold would introduce bias.
For split_unknown_stage models, stage1 and stage2 are run independently
and their outputs composed to the final class probabilities.
For tfidf_lgbm, the fold_1 pickle is used (TF-IDF models are deterministic
so fold averaging doesn't apply in the same way).
"""
# =============================================================================
# LABEL MAPPING CONVENTION (read this before creating a new task!)
#
# The --mapping_dict_path json MUST contain EVERY label value present in the
# data, in this form (example from condition_tier):
#
# { "N": -1, "D": 1, "C": 2, "B": 3, "A": 4 }
#
# * UNKNOWN class -> value -1 (sentinel: "not part of the ordinal scale").
# It must ALSO be named via --unknown_label_value. Omitting it from the
# mapping makes label lookup produce NaN and crashes at astype(int).
# * Known classes -> 1-indexed integers whose ORDER defines the ordinal
# scale (1 = one end, N = the other; e.g. worst -> best).
#
# OUTPUT COLUMN ORDER produced everywhere downstream (oof_probs.npy,
# *_logprob_* columns, soft labels, deployment prob_* columns):
#
# [ known classes sorted by mapping value ASCENDING, then UNKNOWN last ]
#
# e.g. condition_tier: [D, C, B, A, N]
# dist_to_main_street: [ON_MAIN_STREET, ADJACENT, NEAR, MODERATE, FAR, UNKNOWN]
#
# Any consumer that hard-codes a class list must match this order exactly.
# (Forensic note: the May-2026 condition_tier "phobert collapse", F1 0.087,
# was an eval comparing against this order REVERSED; true F1 was 0.9008.)
# =============================================================================
import os
# Reduce CUDA allocator fragmentation. Must be set before torch initialises
# CUDA (torch is imported lazily below, so top-of-module is early enough).
# A value already set in the shell takes precedence.
os.environ.setdefault("PYTORCH_CUDA_ALLOC_CONF", "expandable_segments:True")
import argparse
import gc
import json
import pickle
import time
import warnings
from pathlib import Path
import numpy as np
import pandas as pd
warnings.filterwarnings("ignore")
# MetaLearner lives in meta_learner_core.py β€” shared with meta_learner_trainer.py.
# Importing it here ensures pickle/joblib can deserialise saved MetaLearner instances
# regardless of which script originally created them.
import sys as _sys, os as _os
_sys.path.insert(0, _os.path.dirname(_os.path.abspath(__file__)))
from meta_learner_core import MetaLearner # noqa: E402
# =============================================================================
# ARGUMENT PARSING
# =============================================================================
def parse_args():
p = argparse.ArgumentParser()
p.add_argument("--config", type=str, required=True,
help="Path to deployment_config.json")
p.add_argument("--data_path", type=str, required=True,
help="Parquet with new data to score")
p.add_argument("--text_col", type=str, required=True,
help="Column in data_path containing raw text")
p.add_argument("--output_path", type=str, default="predictions.parquet",
help="Output parquet path")
p.add_argument("--device", type=str, default="cpu",
help="Device for model inference ('cpu' or 'cuda')")
p.add_argument("--batch_size", type=int, default=64,
help="Tokenisation batch size for transformer inference")
p.add_argument("--num_workers", type=int, default=4,
help="Number of CPU workers for parallel tokenisation. "
"Set to 0 to disable (single-threaded). "
"Rule of thumb: number of physical CPU cores - 1.")
p.add_argument("--prefetch", type=int, default=2,
help="Number of batches to prefetch per worker. "
"Higher values use more CPU RAM but keep GPU busier.")
p.add_argument("--chunk_size", type=int, default=50000,
help="Number of rows to process per write chunk. Controls peak "
"memory usage for the feature assembly + meta predict step. "
"Model inference (transformers / tfidf) always runs over the "
"full dataset in a single sequential pass per model to avoid "
"reloading weights repeatedly. Default: 50000.")
p.add_argument("--keep_cols", type=str, default=None,
help="Comma-separated list of extra columns from --data_path to "
"carry through to the output (in addition to text_col and "
"other_cols required by the models). If not set, only the "
"prediction columns are written (no original columns). "
"Use --keep_cols '*' to keep everything (memory-intensive "
"for large datasets).")
p.add_argument("--cache_dir", type=str, default=None,
help="Override the resume-cache directory. Default: "
"<output dir>/inference_cache. Use distinct dirs for "
"kfold vs final checkpoint runs β€” cache filenames are "
"identical across modes and would collide.")
p.add_argument("--clear_cache", action="store_true",
help="Delete the inference cache dir after a successful run. "
"Default: keep it (reusable for re-runs on the same data, "
"e.g. after swapping the meta-learner).")
p.add_argument("--no_dedup", action="store_true",
help="Disable text deduplication. Use when per-row tabular features "
"(other_cols) vary significantly across duplicate texts and you "
"want each row inferred independently. Increases compute by "
"n_total/n_unique factor.")
return p.parse_args()
# =============================================================================
# NORMALISE DEVICE
# =============================================================================
def _normalise_device(d):
return "cuda" if d.lower() == "gpu" else d.lower()
# =============================================================================
# MODEL LOADING HELPERS
# =============================================================================
def _load_encoder(model_name, dtype, device):
from transformers import AutoModel
enc = AutoModel.from_pretrained(model_name, trust_remote_code=True, dtype=dtype)
enc.eval()
enc.to(device)
return enc
def _load_fold_model(fold_dir: Path, original_model_name: str,
dtype, device):
"""
Load the fine-tuned fold encoder, stripping the base_model. prefix
used by MultimodalClassificationModel / OrdinalRegressionModel wrappers.
Falls back to direct load for plain AutoModel checkpoints.
"""
import torch
from transformers import AutoModel
st = fold_dir / "model.safetensors"
use_safe = st.exists()
if not use_safe:
st = fold_dir / "pytorch_model.bin"
if not st.exists():
raise FileNotFoundError("No weights in " + str(fold_dir))
if use_safe:
from safetensors.torch import load_file
raw_sd = load_file(str(st))
else:
raw_sd = torch.load(str(st), map_location="cpu", weights_only=True)
encoder_sd = {k[len("base_model."):]: v
for k, v in raw_sd.items()
if k.startswith("base_model.")}
if not encoder_sd:
encoder_sd = raw_sd
enc = AutoModel.from_pretrained(
original_model_name, trust_remote_code=True, dtype=dtype)
enc.load_state_dict(encoder_sd, strict=False)
enc.eval()
enc.to(device)
return enc
def _get_fold_dir(artifacts_dir, model_name, fold_n, stage=None):
artifact_name = model_name if stage is None else model_name + "__" + stage
safe_name = artifact_name.replace("/", "__")
# 'final' is the single-checkpoint layout from --training_mode final;
# numbered folds come from the kfold layout.
sub = "final" if str(fold_n) == "final" else "fold_" + str(fold_n)
return Path(artifacts_dir) / safe_name / sub / "model"
# =============================================================================
# FEATURE EXTRACTION
# =============================================================================
def _encode_texts(encoder, tokenizer, texts, max_length, device,
batch_size, drop_token_type_ids):
import torch
all_embs = []
for start in range(0, len(texts), batch_size):
batch = texts[start:start + batch_size]
enc = tokenizer(batch, padding=True, truncation=True,
max_length=max_length, return_tensors="pt")
if drop_token_type_ids:
enc.pop("token_type_ids", None)
enc = {k: v.to(device) for k, v in enc.items()}
with torch.no_grad():
out = encoder(**enc)
all_embs.append(out.last_hidden_state[:, 0, :].float().cpu().numpy())
return np.vstack(all_embs)
# =============================================================================
# PARALLEL TOKENISATION DATASET
# =============================================================================
class _TextDataset:
"""
Simple torch Dataset wrapping a list of strings + optional tabular features.
Each worker tokenises its own shard, keeping GPU fed without waiting.
"""
def __init__(self, texts, tokenizer, max_length, drop_token_type_ids,
tabular_features=None):
self.texts = texts
self.tok = tokenizer
self.max_length = max_length
self.drop_tti = drop_token_type_ids
self.tab = tabular_features # (N, d) numpy or None
def __len__(self):
return len(self.texts)
def __getitem__(self, idx):
enc = self.tok(
self.texts[idx],
padding = False, # pad in collate to max length of batch
truncation = True,
max_length = self.max_length,
return_tensors = None, # return plain lists β€” faster to collate
)
if self.drop_tti:
enc.pop("token_type_ids", None)
item = {"__idx": idx, **{k: v for k, v in enc.items()}}
if self.tab is not None:
item["__tab"] = self.tab[idx]
return item
def _collate(batch):
"""Pad a list of tokenised items to the longest sequence in the batch."""
import torch
indices = [x.pop("__idx") for x in batch]
tab_rows = [x.pop("__tab", None) for x in batch]
keys = list(batch[0].keys())
out = {}
for k in keys:
seqs = [x[k] for x in batch]
# Determine pad value: 0 for attention_mask, 1 for input_ids (safe default)
pad_val = 0
max_len = max(len(s) for s in seqs)
padded = [s + [pad_val] * (max_len - len(s)) for s in seqs]
out[k] = torch.tensor(padded, dtype=torch.long)
out["__idx"] = torch.tensor(indices, dtype=torch.long)
if tab_rows[0] is not None:
import numpy as np
out["__tab"] = torch.tensor(np.stack(tab_rows), dtype=torch.float32)
return out
def _build_head(head_keys, device, model_type=None):
"""
Reconstruct the task head from saved weight keys, matching the EXACT
architectures defined in ensemble_distillation_generator.py:
1. Multimodal classification (MultimodalClassificationModel):
classifier.0 = Linear(hidden+tab, hidden)
classifier.3 = Linear(hidden, num_labels)
keys: classifier.0.{weight,bias}, classifier.3.{weight,bias}
2. Ordinal regression (OrdinalRegressionModel):
feature_extractor.0 = Linear(hidden+tab, hidden)
ordinal_head = Linear(hidden, num_classes-1)
keys: feature_extractor.0.{weight,bias}, ordinal_head.{weight,bias}
3. Plain sequence classification (AutoModelForSequenceClassification,
used when other_cols is empty, e.g. rembert):
classifier = Linear(hidden, num_labels)
keys: classifier.{weight,bias} (NO numeric index)
3b. HF two-layer classification head (other_cols empty, roberta/electra
families): classifier.dense + classifier.out_proj on the RAW CLS
token (never the AutoModel pooler, which is untrained in these
checkpoints). Activation differs by family: roberta=tanh, electra=gelu.
keys: classifier.dense.{weight,bias}, classifier.out_proj.{weight,bias}
Returns (head_module, head_type, expects_tabular, n_out) where
head_type = "classification" | "ordinal" | "plain"
expects_tabular= whether the head's input dim includes tabular features
n_out = output dimension (num_labels or num_thresholds)
"""
import torch.nn as nn
def _lin(w, b):
m = nn.Linear(w.shape[1], w.shape[0])
m.weight = nn.Parameter(w.float())
if b is not None:
m.bias = nn.Parameter(b.float())
return m
keys = set(head_keys.keys())
# Case 2: ordinal
if "ordinal_head.weight" in keys and "feature_extractor.0.weight" in keys:
fe_w = head_keys["feature_extractor.0.weight"]
fe_b = head_keys.get("feature_extractor.0.bias")
oh_w = head_keys["ordinal_head.weight"]
oh_b = head_keys.get("ordinal_head.bias")
head = nn.Sequential(
_lin(fe_w, fe_b), nn.ReLU(), nn.Dropout(0.1),
_lin(oh_w, oh_b),
).to(device)
in_dim = fe_w.shape[1] # hidden + tab
n_out = oh_w.shape[0] # num_thresholds = num_classes - 1
return head, "ordinal", in_dim, n_out
# Case 1: multimodal classification (classifier.0 + classifier.3)
if "classifier.0.weight" in keys and "classifier.3.weight" in keys:
c0_w = head_keys["classifier.0.weight"]; c0_b = head_keys.get("classifier.0.bias")
c3_w = head_keys["classifier.3.weight"]; c3_b = head_keys.get("classifier.3.bias")
head = nn.Sequential(
_lin(c0_w, c0_b), nn.ReLU(), nn.Dropout(0.1),
_lin(c3_w, c3_b),
).to(device)
in_dim = c0_w.shape[1]
n_out = c3_w.shape[0]
return head, "classification", in_dim, n_out
# Case 3b: HF two-layer head (RobertaClassificationHead / Electra-
# ClassificationHead). Consumes the RAW CLS token; head_type "hf_head"
# (NOT "plain") so the forward pass never routes through pooler_output β€”
# roberta AutoModels have an UNTRAINED pooler in these checkpoints.
if "classifier.dense.weight" in keys and "classifier.out_proj.weight" in keys:
d_w = head_keys["classifier.dense.weight"]; d_b = head_keys.get("classifier.dense.bias")
o_w = head_keys["classifier.out_proj.weight"]; o_b = head_keys.get("classifier.out_proj.bias")
mt = (model_type or "").lower()
act = nn.GELU() if mt == "electra" else nn.Tanh()
if mt not in ("electra", "roberta", "xlm-roberta", "camembert"):
print(" [WARN] hf_head activation defaulting to tanh for "
"model_type=%r β€” verify against the HF head class." % model_type)
head = nn.Sequential(_lin(d_w, d_b), act, _lin(o_w, o_b)).to(device)
return head, "hf_head", d_w.shape[1], o_w.shape[0]
# Case 3: plain classification (single classifier.{weight,bias})
if "classifier.weight" in keys:
w = head_keys["classifier.weight"]; b = head_keys.get("classifier.bias")
head = _lin(w, b).to(device)
in_dim = w.shape[1]
n_out = w.shape[0]
return head, "plain", in_dim, n_out
# Fallback: any output_layer
if "output_layer.weight" in keys:
w = head_keys["output_layer.weight"]; b = head_keys.get("output_layer.bias")
head = _lin(w, b).to(device)
return head, "plain", w.shape[1], w.shape[0]
return None, None, None, None
def _load_sd(fold_dir):
"""Load state dict from safetensors or pytorch_model.bin."""
import torch
st = fold_dir / "model.safetensors"
if not st.exists():
st = fold_dir / "pytorch_model.bin"
if st.suffix == ".safetensors":
from safetensors.torch import load_file
return load_file(str(st))
return torch.load(str(st), map_location="cpu", weights_only=True)
# Head parameter name stems β€” anything starting with these is a task head,
# NOT part of the transformer encoder. Matches the architectures defined in
# ensemble_distillation_generator.py plus HF's default seq-classification heads.
_HEAD_STEMS = ("classifier", "ordinal_head", "feature_extractor",
"output_layer", "score", "pre_classifier")
def _split_sd(raw_sd):
"""
Split a checkpoint state dict into (encoder_sd, head_keys).
Handles three checkpoint layouts:
1. Multimodal/ordinal wrapper: encoder under 'base_model.<prefix>.*',
head at top level (classifier.* / ordinal_head.* / feature_extractor.*).
2. Plain HF AutoModelForSequenceClassification: encoder under
'<model_prefix>.*' (e.g. 'rembert.', 'roberta.', 'electra.', 'bert.'),
head at top level (classifier.weight/bias).
3. Bare encoder: everything is encoder.
Head keys are identified by their parameter name stem, independent of any
prefix. Encoder keys have their leading prefix stripped so they load into a
plain AutoModel.
"""
head_keys = {}
encoder_raw = {}
for k, v in raw_sd.items():
# Strip a leading "base_model." if present (multimodal wrapper)
kk = k[len("base_model."):] if k.startswith("base_model.") else k
# Is this a head parameter? Check the FIRST path component.
first = kk.split(".", 1)[0]
if first in _HEAD_STEMS:
head_keys[kk] = v
else:
encoder_raw[kk] = v
# encoder_raw may still be prefixed by the model type (rembert., roberta.,
# electra., bert., deberta., etc). Detect and strip a single common prefix
# so keys match a plain AutoModel (which expects e.g. 'embeddings.*').
prefixes = {k.split(".", 1)[0] for k in encoder_raw if "." in k}
# A real encoder prefix is one shared by (almost) all keys and is a known
# backbone name. If there's exactly one dominant prefix, strip it.
encoder_sd = {}
known_backbones = {"rembert", "roberta", "electra", "bert", "deberta",
"deberta_v2", "xlm_roberta", "camembert", "distilbert",
"albert", "mpnet", "model", "transformer"}
strip_prefix = None
if len(prefixes) == 1:
only = next(iter(prefixes))
if only in known_backbones:
strip_prefix = only
else:
# Multiple prefixes β€” pick the one that's a known backbone if unique
bk = [p for p in prefixes if p in known_backbones]
if len(bk) == 1:
strip_prefix = bk[0]
if strip_prefix:
plen = len(strip_prefix) + 1
for k, v in encoder_raw.items():
if k.startswith(strip_prefix + "."):
encoder_sd[k[plen:]] = v
else:
encoder_sd[k] = v
else:
encoder_sd = encoder_raw
return encoder_sd, head_keys
class _PreTokenizedDataset:
"""
Dataset backed by already-tokenised arrays stored on disk.
Workers just index into numpy mmaps β€” zero CPU tokenisation overhead.
"""
def __init__(self, cache_dir, n, tabular_features=None):
self.input_ids = np.load(str(cache_dir / "input_ids.npy"), mmap_mode="r")
self.attention_mask = np.load(str(cache_dir / "attention_mask.npy"), mmap_mode="r")
tok_type_path = cache_dir / "token_type_ids.npy"
self.token_type_ids = (np.load(str(tok_type_path), mmap_mode="r")
if tok_type_path.exists() else None)
self.tab = tabular_features
self.n = n
def __len__(self):
return self.n
def __getitem__(self, idx):
item = {
"__idx": idx,
"input_ids": self.input_ids[idx].tolist(),
"attention_mask": self.attention_mask[idx].tolist(),
}
if self.token_type_ids is not None:
item["token_type_ids"] = self.token_type_ids[idx].tolist()
if self.tab is not None:
item["__tab"] = self.tab[idx]
return item
def _tokenize_and_cache(texts, tokenizer, max_length, drop_tti,
cache_dir, num_workers):
"""
Tokenize all texts once, padding to max_length, saving as numpy arrays.
Subsequent folds/stages read via mmap β€” zero re-tokenisation cost.
"""
import torch
from torch.utils.data import DataLoader
print(" Tokenising {:,} texts (once for all folds)...".format(len(texts)))
cache_dir.mkdir(parents=True, exist_ok=True)
# Use _TextDataset + DataLoader for parallel tokenisation
class _RawTextDS:
def __init__(self, texts, tok, ml, drop):
self.texts = texts; self.tok = tok
self.ml = ml; self.drop = drop
def __len__(self): return len(self.texts)
def __getitem__(self, i):
enc = self.tok(self.texts[i], padding="max_length",
truncation=True, max_length=self.ml, return_tensors=None)
if self.drop: enc.pop("token_type_ids", None)
return {k: v for k, v in enc.items()}
def _collate_raw(batch):
import torch
out = {}
for k in batch[0]:
out[k] = torch.tensor([x[k] for x in batch], dtype=torch.long)
return out
ds = _RawTextDS(texts, tokenizer, max_length, drop_tti)
dl = DataLoader(ds, batch_size=512, shuffle=False,
num_workers=num_workers, collate_fn=_collate_raw)
n = len(texts)
id_arr = np.zeros((n, max_length), dtype=np.int32)
mask_arr = np.zeros((n, max_length), dtype=np.int8)
tti_arr = None
has_tti = False
for b_idx, batch in enumerate(dl):
start = b_idx * 512
end = min(start + 512, n)
sl = batch["input_ids"].numpy()[:end-start]
id_arr[start:end] = sl
mask_arr[start:end] = batch["attention_mask"].numpy()[:end-start]
if "token_type_ids" in batch and not has_tti:
tti_arr = np.zeros((n, max_length), dtype=np.int8)
has_tti = True
if has_tti:
tti_arr[start:end] = batch["token_type_ids"].numpy()[:end-start]
if b_idx % 100 == 0:
print(" Tokenising... {:.0f}%".format(end / n * 100), flush=True)
np.save(str(cache_dir / "input_ids.npy"), id_arr)
np.save(str(cache_dir / "attention_mask.npy"), mask_arr)
if has_tti:
np.save(str(cache_dir / "token_type_ids.npy"), tti_arr)
print(" Tokenisation cached -> {}".format(cache_dir))
def run_transformer_model(model_cfg, texts, tabular_features,
max_length, device, batch_size, k_folds,
num_workers=4, prefetch=2,
token_cache_dir=None):
"""
Run a transformer model (all K folds), returning averaged probabilities.
Optimisations vs naive approach:
1. Tokenise ONCE before the fold loop, cache to disk as numpy arrays.
All folds read from mmap β€” zero re-tokenisation.
2. Load encoder ARCHITECTURE once (AutoConfig + empty init), then per
fold just call load_state_dict(). Avoids re-downloading/re-reading
the original pretrained weights K times.
3. Running average accumulation β€” O(NΓ—C) memory regardless of K folds.
4. DataLoader with num_workers for prefetch during GPU forward pass.
"""
import torch
import torch.nn as nn
import torch.nn.functional as F
from transformers import AutoTokenizer, AutoModel, AutoConfig
from torch.utils.data import DataLoader
mname = model_cfg["model_name"]
cname = model_cfg["clean_name"]
task = model_cfg["task_type"]
tok_name = model_cfg.get("tokenizer_name") or mname
drop_tti = model_cfg.get("drop_token_type_ids", False)
split_unk = model_cfg.get("split_unknown_stage", False)
other_cols = model_cfg.get("other_cols", [])
use_fp16 = model_cfg.get("use_fp16", False)
use_bf16 = model_cfg.get("use_bf16", False)
art_dir = model_cfg["artifacts_dir"]
tab_feats = tabular_features if (other_cols and tabular_features is not None) else None
dtype = (torch.bfloat16 if use_bf16 else
torch.float16 if use_fp16 else torch.float32)
n = len(texts)
# ── Step 1: Tokenise once ────────────────────────────────────────────────
tok_cache = (token_cache_dir / "{}.tokens".format(
cname.replace("/", "__")))
if tok_cache.exists() and (tok_cache / "input_ids.npy").exists():
print(" Tokenisation cache found for {} β€” skipping re-tokenisation.".format(cname))
else:
tokenizer = AutoTokenizer.from_pretrained(tok_name, trust_remote_code=True)
_tokenize_and_cache(texts, tokenizer, max_length, drop_tti,
tok_cache, num_workers)
del tokenizer
gc.collect()
pre_tok_ds = _PreTokenizedDataset(tok_cache, n, tab_feats)
# ── Step 2: Load encoder architecture ONCE (no pretrained weights) ───────
print(" Loading encoder architecture for {} ...".format(cname))
config = AutoConfig.from_pretrained(mname, trust_remote_code=True)
encoder = AutoModel.from_config(config)
encoder = encoder.to(dtype)
# Don't move to device yet β€” weights are wrong; load_state_dict first
def _run_fold(fold_dir, fold_label, partial_cache_path=None):
"""
Swap weights into the shared encoder, run inference, return (N,C) array.
Intra-fold resumability:
- Every `save_every` batches, fold_sum and samples_done are written to
a .npz partial cache file.
- On entry, if the partial cache exists, the running sum is restored and
already-processed samples are skipped via a sliced DataLoader.
- On completion the partial cache is deleted (full fold cache takes over).
"""
# How often to checkpoint within a fold (every ~5% of batches, min 50)
n_batches_total = (n + batch_size - 1) // batch_size
save_every = max(50, n_batches_total // 20)
# ── Resume partial fold if checkpoint exists ──────────────────────────
fold_sum = None
samples_done = 0
if partial_cache_path and partial_cache_path.exists():
try:
data = np.load(str(partial_cache_path))
fold_sum = data["fold_sum"]
samples_done = int(data["samples_done"])
print(" {} β€” resuming from sample {:,} / {:,} ({:.0f}%)".format(
fold_label, samples_done, n, samples_done / n * 100))
except Exception as e:
print(" {} β€” partial cache load failed ({}), starting fresh".format(
fold_label, e))
fold_sum = None
samples_done = 0
# ── Load weights only if we actually need to run inference ────────────
if samples_done < n:
raw_sd = _load_sd(fold_dir)
encoder_sd, head_keys = _split_sd(raw_sd)
del raw_sd
gc.collect()
load_res = encoder.load_state_dict(encoder_sd, strict=False)
n_missing = len(load_res.missing_keys)
n_unexpected = len(load_res.unexpected_keys)
if n_missing or n_unexpected:
print(" {} β€” load report: {} missing, {} unexpected keys".format(
fold_label, n_missing, n_unexpected))
if n_missing > 5:
print(" [WARN] Many missing keys β€” encoder may be "
"partially random. First few: {}".format(
load_res.missing_keys[:4]))
del encoder_sd
encoder.eval()
encoder.to(device)
head, head_type, head_in_dim, n_out = _build_head(
head_keys, device,
model_type=getattr(getattr(encoder, "config", None), "model_type", None))
if head is None:
raise RuntimeError(
"Could not reconstruct head for {} β€” keys: {}".format(
fold_label, sorted(head_keys.keys())[:10]))
del head_keys
gc.collect()
# Determine whether the head expects tabular features concatenated.
# head_in_dim is the head's input width; encoder hidden size is the
# CLS dim. If head_in_dim > hidden, the head was trained with tabular
# features appended (multimodal). If equal, it's a plain head (no tab).
encoder_hidden = encoder.config.hidden_size
head_wants_tab = head_in_dim is not None and head_in_dim > encoder_hidden
tab_width = (head_in_dim - encoder_hidden) if head_wants_tab else 0
print(" {} β€” head={} n_out={} hidden={} tab={}".format(
fold_label, head_type, n_out, encoder_hidden,
tab_width if head_wants_tab else "none"), flush=True)
from torch.utils.data import Subset
remaining_ds = (Subset(pre_tok_ds, list(range(samples_done, n)))
if samples_done > 0 else pre_tok_ds)
loader = DataLoader(
remaining_ds,
batch_size = batch_size,
shuffle = False,
num_workers = num_workers,
prefetch_factor = prefetch if num_workers > 0 else None,
pin_memory = device.startswith("cuda"),
collate_fn = _collate,
)
n_batches = len(loader)
report_every = max(1, n_batches // 20)
for b_idx, batch in enumerate(loader):
indices = batch.pop("__idx")
tab_b = batch.pop("__tab", None)
enc_in = {k: v.to(device, non_blocking=True) for k, v in batch.items()}
with torch.no_grad():
out = encoder(**enc_in)
# Feature extraction must match how the head was TRAINED:
# - Multimodal/ordinal wrapper models (classification/ordinal
# head types) classify on the raw CLS token:
# last_hidden_state[:, 0, :] β€” the wrapper's design.
# - Plain HF AutoModelForSequenceClassification (head_type
# "plain", e.g. rembert) classifies on the POOLER output:
# tanh(dense(CLS)). Feeding raw CLS into that classifier
# produces near-constant garbage predictions.
if head_type == "plain" and getattr(out, "pooler_output", None) is not None:
cls_emb = out.pooler_output.float()
else:
cls_emb = out.last_hidden_state[:, 0, :].float()
# Concatenate tabular features ONLY if the head expects them.
if head_wants_tab:
if tab_b is not None:
tab_t = tab_b.to(device, non_blocking=True).float()
else:
# Head expects tab but none provided β€” pad with zeros
tab_t = torch.zeros(cls_emb.shape[0], tab_width,
device=device)
# Match width exactly (guard against mismatch)
if tab_t.shape[1] != tab_width:
if tab_t.shape[1] > tab_width:
tab_t = tab_t[:, :tab_width]
else:
pad = torch.zeros(cls_emb.shape[0],
tab_width - tab_t.shape[1],
device=device)
tab_t = torch.cat([tab_t, pad], dim=1)
cls_emb = torch.cat([cls_emb, tab_t], dim=1)
logits = head(cls_emb)
if head_type == "ordinal":
# logits: (B, num_thresholds=num_classes-1)
# Cumulative P(label > i) via sigmoid, expand to num_classes
cum = torch.sigmoid(logits)
K = cum.shape[1] # thresholds
p = torch.zeros(cum.shape[0], K + 1, device=device)
p[:, 0] = 1 - cum[:, 0]
for i in range(1, K):
p[:, i] = cum[:, i-1] - cum[:, i]
p[:, -1] = cum[:, -1]
probs_np = p.clamp(min=0).cpu().numpy()
else:
# classification / plain
probs_np = F.softmax(logits, dim=-1).cpu().numpy()
if fold_sum is None:
fold_sum = np.zeros((n, probs_np.shape[1]), dtype=np.float64)
fold_sum[indices.numpy()] += probs_np
samples_done += len(indices)
if b_idx % report_every == 0 or b_idx == n_batches - 1:
print(" {} β€” {}/{} batches ({:.0f}%)".format(
fold_label, b_idx + 1, n_batches,
(b_idx + 1) / n_batches * 100), flush=True)
# Periodic intra-fold checkpoint
if partial_cache_path and (b_idx + 1) % save_every == 0:
np.savez(str(partial_cache_path),
fold_sum=fold_sum.astype(np.float32),
samples_done=np.array(samples_done))
# Move encoder back to CPU to free GPU memory
encoder.cpu()
if head is not None:
del head
gc.collect()
if device.startswith("cuda"):
torch.cuda.empty_cache()
# Delete partial cache β€” full fold result saved by caller
if partial_cache_path and partial_cache_path.exists():
partial_cache_path.unlink()
return fold_sum.astype(np.float32)
def _fold_cache_path(key, fold_n, stage=None):
"""Per-fold cache: saved immediately after each fold completes."""
tag = "{}_fold{}".format(key, fold_n)
if stage:
tag += "_{}".format(stage)
safe = tag.replace(":", "_").replace("/", "__")
return token_cache_dir / "{}.npy".format(safe)
def _run_fold_cached(fold_dir, fold_n, stage, label):
"""
Run a fold or load from cache.
- If the completed fold .npy exists: load instantly.
- Otherwise: run with intra-fold partial checkpointing.
A .partial.npz is written every ~5% of batches so a crash
mid-fold can resume from the last checkpoint rather than fold 1.
"""
model_key = "{}:{}".format(model_cfg["source"], cname)
fold_cache = _fold_cache_path(model_key, fold_n, stage)
partial_key = "{}_fold{}{}".format(
model_key, fold_n, "_{}".format(stage) if stage else "")
safe = partial_key.replace(":", "_").replace("/", "__")
partial_cache = token_cache_dir / "{}.partial.npz".format(safe)
# Completed fold already cached
if fold_cache.exists():
arr = np.load(str(fold_cache))
if arr.shape[0] == n:
print(" {} β€” loaded from fold cache".format(label))
return arr
print(" {} β€” fold cache shape mismatch, re-running".format(label))
# Run with intra-fold checkpointing
arr = _run_fold(fold_dir, label, partial_cache_path=partial_cache)
np.save(str(fold_cache), arr)
print(" {} β€” fold cached -> {}".format(label, fold_cache.name))
return arr
# ── Checkpoint layout detection: final (single-pass) vs K folds ──────────
# --training_mode final saves ONE checkpoint per model under final/model/.
# When present it is preferred: 1/K the serving cost, trained on all
# non-holdout data. Fold checkpoints remain the fallback.
_probe = _get_fold_dir(art_dir, mname, "final", "stage1" if split_unk else None)
if _probe.exists():
fold_ids = ["final"]
print(" Using FINAL checkpoint for {} (single pass)".format(cname))
else:
fold_ids = list(range(1, k_folds + 1))
# ── Stage 1 (all models) ─────────────────────────────────────────────────
s1_sum = None; s1_count = 0
for fold_n in fold_ids:
stage = "stage1" if split_unk else None
fold_dir = _get_fold_dir(art_dir, mname, fold_n, stage)
if not fold_dir.exists():
print(" [WARN] Fold {} not found for {} β€” skipping".format(fold_n, cname))
continue
label = ("fold {}/{} [stage1]".format(fold_n, len(fold_ids)) if split_unk
else "fold {}/{}".format(fold_n, len(fold_ids)))
fold_arr = _run_fold_cached(fold_dir, fold_n, stage, label)
s1_sum = fold_arr.astype(np.float64) if s1_sum is None else s1_sum + fold_arr
s1_count += 1
del fold_arr; gc.collect()
if s1_count == 0:
raise RuntimeError("No fold checkpoints loaded for " + cname)
s1_avg = (s1_sum / s1_count).astype(np.float32)
del s1_sum; gc.collect()
# ── Stage 2 (split_unknown_stage only) ───────────────────────────────────
if split_unk:
s2_sum = None; s2_count = 0
for fold_n in fold_ids:
fold_dir2 = _get_fold_dir(art_dir, mname, fold_n, "stage2")
if not fold_dir2.exists():
continue
label2 = "fold {}/{} [stage2]".format(fold_n, len(fold_ids))
fold_arr = _run_fold_cached(fold_dir2, fold_n, "stage2", label2)
s2_sum = fold_arr.astype(np.float64) if s2_sum is None else s2_sum + fold_arr
s2_count += 1
del fold_arr; gc.collect()
if s2_count > 0:
s2_avg = (s2_sum / s2_count).astype(np.float32)
del s2_sum
# Compose EXACTLY as the generator does (split_unknown_stage):
# stage1 (plain classification, label 1=unknown, 0=known):
# stage1_probs[:, 0] = P(known), stage1_probs[:, 1] = P(unknown)
# Calibrate P(unknown) by dividing odds by ordinal_num_classes:
# odds = p_unknown / p_known
# adj = odds / ordinal_num_classes
# p_unknown_cal = adj / (1 + adj); p_known_cal = 1 - p_unknown_cal
# stage2 (ordinal) gives P(class | known) over ordinal_num_classes.
# Final: [p_known_cal * stage2_i for each known class] + [p_unknown_cal]
# Known classes come first, UNKNOWN last β€” matches class_order.
ordinal_num_classes = s2_avg.shape[1] # = n_classes - 1
p_known = s1_avg[:, 0]
p_unknown = s1_avg[:, 1]
odds_unknown = p_unknown / np.clip(p_known, 1e-7, 1.0)
adj_odds = odds_unknown / ordinal_num_classes
p_unknown_cal = adj_odds / (1.0 + adj_odds)
p_known_cal = 1.0 - p_unknown_cal
composed = np.zeros((s1_avg.shape[0], ordinal_num_classes + 1),
dtype=np.float32)
for i in range(ordinal_num_classes):
composed[:, i] = p_known_cal * s2_avg[:, i]
composed[:, -1] = p_unknown_cal
return composed
del encoder; gc.collect()
return s1_avg
def run_tfidf_lgbm(model_cfg, texts, tabular_features, k_folds):
"""Run TF-IDF + LightGBM from fold_1 pickle."""
from scipy.sparse import hstack, csr_matrix
art_dir = model_cfg["artifacts_dir"]
pkl_path = Path(art_dir) / "tfidf_lgbm" / "fold_1" / "model.pkl"
if not pkl_path.exists():
raise FileNotFoundError("tfidf_lgbm pickle not found: " + str(pkl_path))
with open(pkl_path, "rb") as f:
bundle = pickle.load(f)
cal = bundle["calibrated_model"]
wtf = bundle["word_tfidf"]
ctf = bundle["char_tfidf"]
X = hstack([wtf.transform(texts), ctf.transform(texts)])
if tabular_features is not None and tabular_features.shape[1] > 0:
tab = csr_matrix(tabular_features.astype("float32"))
X = hstack([X, tab])
return cal.predict_proba(X)
# =============================================================================
# DERIVED FEATURES (mirrors OOFFeatureBuilder)
# =============================================================================
def entropy(probs, eps=1e-7):
p = np.clip(probs, eps, 1.0)
return -np.sum(p * np.log(p), axis=1)
def sym_kl(p, q, eps=1e-7):
p = np.clip(p, eps, 1.0)
q = np.clip(q, eps, 1.0)
return 0.5 * (np.sum(p * np.log(p/q), axis=1) +
np.sum(q * np.log(q/p), axis=1))
def build_feature_vector(probs_by_key, class_order, n_classes,
use_derived, expected_names=None):
"""
Build the feature vector to EXACTLY match the trainer's OOFFeatureBuilder.
probs_by_key: dict "CE:<cname>" / "KL:<cname>" -> (N, n_classes) array
Strategy: compute every candidate feature into a name->column dict, then
emit columns in the order given by `expected_names` (the training feature
list stored in the meta-learner pickle). This guarantees the inference
matrix matches the trained model's expected feature set and order exactly,
eliminating count/order mismatches.
Trainer naming conventions (must match exactly):
base: "CE_<cname>_<CLASS>" e.g. CE_mlm_listing_NEAR
derived: "CE_<cname>_entropy", "CE_<cname>_argmax"
"CE_KL_<cname>_sym_kl", "CE_KL_<cname>_diff_class<i>"
"CE_pair_CE_<n1>_vs_CE_<n2>_kl"
Note: trainer uses underscore between source and name (CE_<cname>),
while keys here use colon (CE:<cname>).
"""
feat = {} # name -> (N,) or (N,1) column
# ── Base probabilities ────────────────────────────────────────────────────
for key, probs in probs_by_key.items():
src, cname = key.split(":", 1)
for i, cls in enumerate(class_order):
feat["{}_{}_{}".format(src, cname, cls)] = probs[:, i]
if use_derived:
all_p = dict(probs_by_key)
# entropy + argmax per model
for key, probs in probs_by_key.items():
src, cname = key.split(":", 1)
feat["{}_{}_entropy".format(src, cname)] = entropy(probs)
feat["{}_{}_argmax".format(src, cname)] = np.argmax(probs, axis=1).astype(float)
# CE-KL pair divergence (same model name in both CE and KL)
ce_keys = [k for k in all_p if k.startswith("CE:")]
for ce_k in ce_keys:
cname = ce_k.split(":", 1)[1]
kl_k = "KL:" + cname
if kl_k in all_p:
feat["CE_KL_{}_sym_kl".format(cname)] = sym_kl(all_p[ce_k], all_p[kl_k])
diff = all_p[ce_k] - all_p[kl_k]
for i in range(diff.shape[1]):
feat["CE_KL_{}_diff_class{}".format(cname, i)] = diff[:, i]
# Pairwise CE disagreement β€” trainer key format: CE_pair_CE_<n1>_vs_CE_<n2>_kl
from itertools import combinations
ce_prob_list = [(k.split(":", 1)[1], all_p[k]) for k in ce_keys]
for (n1, p1), (n2, p2) in combinations(ce_prob_list, 2):
feat["CE_pair_CE_{}_vs_CE_{}_kl".format(n1, n2)] = sym_kl(p1, p2)
# ── Assemble in the trainer's exact order ─────────────────────────────────
if expected_names:
N = next(iter(feat.values())).shape[0]
cols = []
missing = []
for name in expected_names:
if name in feat:
cols.append(feat[name].reshape(-1, 1))
else:
missing.append(name)
cols.append(np.zeros((N, 1))) # placeholder; will warn
if missing:
print(" [WARN] {} expected features not produced (filled 0): {}".format(
len(missing), missing[:8]))
# Warn about extra features we built that the model doesn't expect
extra = [k for k in feat if k not in set(expected_names)]
if extra:
print(" [INFO] {} computed features not used by model (ignored): {}".format(
len(extra), extra[:8]))
return np.hstack(cols), list(expected_names)
# No expected names β€” fall back to deterministic order (base then derived)
names = list(feat.keys())
return np.hstack([feat[k].reshape(-1, 1) for k in names]), names
# =============================================================================
# FROZEN ENCODER EMBEDDINGS
# =============================================================================
def get_frozen_embeddings(texts, cfg, device, batch_size, cache_dir=None):
"""
Extract embeddings from the frozen encoder and apply PCA.
The PCA transform is reconstructed from the cached training embeddings
(frozen_emb_cache) by re-fitting on those β€” since frozen encoder weights
never change, this is equivalent to the original fit.
"""
from sklearn.decomposition import PCA
from transformers import AutoTokenizer, AutoModel
import torch
model_name = cfg["frozen_encoder"]
tok_name = cfg.get("frozen_encoder_tokenizer") or model_name
n_comp = cfg["frozen_emb_n_components"]
cache_path = cfg.get("frozen_emb_cache")
tokenizer = AutoTokenizer.from_pretrained(tok_name, trust_remote_code=True)
encoder = AutoModel.from_pretrained(model_name, trust_remote_code=True)
encoder.eval()
encoder.to(device)
vocab_size = encoder.config.vocab_size
# Cap max_length at the model's position-embedding limit. Models like
# PhoBERT have max_position_embeddings=258 (256 usable + 2 special tokens);
# tokenising to 512 produces position IDs beyond the table -> CUDA OOB assert
# in the embeddings LayerNorm. Use the config value, with the standard
# RoBERTa offset of 2 for the padding-idx position scheme.
max_pos = getattr(encoder.config, "max_position_embeddings", 512)
# RoBERTa reserves positions 0,1 (pad/offset) so usable length is max_pos - 2
safe_max_len = max_pos - 2 if max_pos <= 600 else 512
frozen_max_len = int(cfg.get("frozen_max_length", safe_max_len))
frozen_max_len = min(frozen_max_len, safe_max_len)
print(" frozen encoder max_length = {} (model max_position={})".format(
frozen_max_len, max_pos))
n_batches = (len(texts) + batch_size - 1) // batch_size
report_every = max(1, n_batches // 10)
# ── Crash-safe persistence: raw embeddings in a resumable memmap ────────
# This stage is the slowest in the pipeline (serial slow-BPE tokenisation
# starves the GPU); losing it to a downstream crash costs ~10h. Progress
# is checkpointed every 200 batches.
hidden = encoder.config.hidden_size
raw_path = prog_path = None
start_batch = 0
emb_mm = None
if cache_dir:
Path(cache_dir).mkdir(parents=True, exist_ok=True)
raw_path = Path(cache_dir) / "_frozen_emb_raw.npy"
prog_path = Path(cache_dir) / "_frozen_emb_raw.progress"
if raw_path.exists() and prog_path.exists():
try:
cand = np.lib.format.open_memmap(str(raw_path), mode="r+")
done = int(prog_path.read_text().strip() or 0)
if cand.shape == (len(texts), hidden) and 0 < done <= n_batches:
emb_mm, start_batch = cand, done
print(" frozen emb: RESUMING from batch {}/{}".format(
done, n_batches), flush=True)
except Exception as e:
print(" frozen emb: cache unreadable ({}) β€” restarting".format(e))
if emb_mm is None:
emb_mm = np.lib.format.open_memmap(str(raw_path), mode="w+",
dtype=np.float32, shape=(len(texts), hidden))
else:
emb_mm = np.zeros((len(texts), hidden), dtype=np.float32)
# Tokenise ONCE in parallel to cached arrays (proven _tokenize_and_cache
# machinery), then stream the mmap through the GPU. Long-lived DataLoader
# workers over the raw text list leak memory via fork copy-on-write; this
# bounds worker lifetime to the tokenisation phase. max_length padding is
# attention-masked, so embeddings match dynamic padding.
frozen_tok_dir = Path(cache_dir) / "_frozen_tokens" if cache_dir else None
if frozen_tok_dir is None:
raise RuntimeError("frozen embeddings now require --cache_dir")
if not (frozen_tok_dir / "input_ids.npy").exists():
_tokenize_and_cache(texts, tokenizer, frozen_max_len, True,
frozen_tok_dir, num_workers=8)
ids = np.load(str(frozen_tok_dir / "input_ids.npy"), mmap_mode="r")
mask = np.load(str(frozen_tok_dir / "attention_mask.npy"), mmap_mode="r")
for b_idx in range(start_batch, n_batches):
s = b_idx * batch_size
e = min(s + batch_size, len(texts))
input_ids = torch.from_numpy(np.ascontiguousarray(ids[s:e])).long() \
.clamp(0, vocab_size - 1).to(device)
attn = torch.from_numpy(np.ascontiguousarray(mask[s:e])).long().to(device)
with torch.no_grad():
out = encoder(input_ids=input_ids, attention_mask=attn)
emb_mm[s:e] = out.last_hidden_state[:, 0, :].float().cpu().numpy()
if prog_path is not None and (b_idx % 200 == 0 or b_idx == n_batches - 1):
emb_mm.flush()
prog_path.write_text(str(b_idx + 1))
if b_idx % report_every == 0 or b_idx == n_batches - 1:
print(" frozen emb {}/{} ({:.0f}%)".format(
b_idx + 1, n_batches, (b_idx + 1) / n_batches * 100), flush=True)
del encoder
gc.collect()
if device.startswith("cuda"):
torch.cuda.empty_cache()
raw = np.asarray(emb_mm)
# Apply the SAME PCA fitted during training. Re-fitting here would produce
# different components and feed the meta-learner inconsistent features.
import joblib
pca_path = str(Path(cache_path).with_suffix("")) + "_pca.joblib" if cache_path else None
if pca_path and Path(pca_path).exists():
bundle = joblib.load(pca_path)
pca = bundle["pca"]
reduced = pca.transform(raw).astype(np.float32) # transform, NOT fit_transform
print(" Applied saved training PCA ({} -> {} dims)".format(
raw.shape[1], reduced.shape[1]))
else:
raise FileNotFoundError(
"Frozen PCA transform not found at {}.\n".format(pca_path) +
"The meta-learner was trained with a specific PCA fit that must be "
"reused at inference. Regenerate it by running the trainer's frozen "
"embedding step on the TRAINING data, which saves <cache>_pca.joblib.\n"
"Quick fix command:\n"
" python scripts/regenerate_frozen_pca.py \\\n"
" --frozen_encoder {} \\\n".format(model_name) +
" --frozen_encoder_tokenizer {} \\\n".format(tok_name) +
" --data_path data/labelled/<training_data>.parquet \\\n"
" --text_col text --max_length {} --n_components {} \\\n".format(
frozen_max_len, n_comp) +
" --cache_path {}".format(cache_path))
return reduced
# =============================================================================
# MAIN
# =============================================================================
def main():
args = parse_args()
device = _normalise_device(args.device)
# ── Load config, resolving all paths relative to the config file ──────────
config_dir = Path(args.config).parent.resolve()
with open(args.config) as f:
cfg = json.load(f)
def _resolve(p):
"""
Resolve a path from the config to an absolute path.
Priority:
1. Absolute path in config -> use as-is
2. Relative to config_dir -> use if exists
3. Relative to cwd (project root) -> use if exists (catches paths
like "experiments/ce_v1/artifacts" that were stored relative to
the project root rather than the config file)
4. Just the filename next to config -> fallback for configs written
before directory restructuring
"""
if p is None:
return None
pp = Path(p)
if pp.is_absolute():
return str(pp)
# Try relative to config dir
by_config = (config_dir / pp).resolve()
if by_config.exists():
return str(by_config)
# Try relative to cwd (project root β€” most common for artifacts_dir)
by_cwd = (Path.cwd() / pp).resolve()
if by_cwd.exists():
return str(by_cwd)
# Try just the filename next to the config
by_name = (config_dir / pp.name).resolve()
if by_name.exists():
print(" [NOTE] '{}' resolved to '{}' (filename fallback).".format(
p, by_name))
return str(by_name)
# Nothing found β€” return cwd-relative resolution so the error is readable
print(" [WARN] Could not resolve path '{}' β€” tried:".format(p))
print(" config-relative : {}".format(by_config))
print(" cwd-relative : {}".format(by_cwd))
print(" filename : {}".format(by_name))
return str(by_cwd)
# Patch all paths in cfg to be absolute
cfg["meta_learner_path"] = _resolve(cfg["meta_learner_path"])
if cfg.get("frozen_emb_cache"):
cfg["frozen_emb_cache"] = _resolve(cfg["frozen_emb_cache"])
for m in cfg.get("models", []):
if m.get("artifacts_dir"):
m["artifacts_dir"] = _resolve(m["artifacts_dir"])
print("="*60)
print("META-LEARNER INFERENCE")
print("="*60)
print("Config :", cfg["label"])
print("Meta type :", cfg["meta_type"], " | CV F1:", cfg["meta_f1_cv"])
print("Classes :", cfg["class_order"])
print("Config dir:", config_dir)
# ── Determine which columns to load from the parquet ─────────────────────
# Load only what's needed: text + any tabular cols the models use.
# This is critical for 1.7M-row datasets β€” loading all columns is wasteful.
required_cols = {args.text_col}
for m_cfg in cfg.get("models", []):
required_cols.update(m_cfg.get("other_cols", []))
keep_all = args.keep_cols == "*"
extra_keep = []
if args.keep_cols and args.keep_cols != "*":
extra_keep = [c.strip() for c in args.keep_cols.split(",")]
required_cols.update(extra_keep)
print("\nLoading parquet columns:", sorted(required_cols)
if not keep_all else "(all)")
if keep_all:
df = pd.read_parquet(args.data_path)
else:
import pyarrow.parquet as pq
available = pq.read_schema(args.data_path).names
cols_to_read = [c for c in required_cols if c in available]
missing_at_load = required_cols - set(available)
if missing_at_load:
print(" [WARN] Columns not in parquet (will be filled with 0):",
sorted(missing_at_load))
df = pd.read_parquet(args.data_path, columns=cols_to_read)
n_total = len(df)
print("Total rows:", n_total)
# ── Separate null/empty text rows β€” assign UNKNOWN directly ──────────────
# Handles actual NaN, Python None, empty string, and string "None".
null_mask = (
df[args.text_col].isna() |
(df[args.text_col].astype(str).str.strip() == "") |
(df[args.text_col].astype(str).str.strip().str.lower() == "none")
)
n_null = null_mask.sum()
if n_null:
print(" Null/empty text rows: {:,} β€” will be assigned UNKNOWN directly.".format(n_null))
# ── Deduplicate on text for inference efficiency ───────────────────────────
# Rows sharing the same text get inferred once and results are broadcast back.
# Note: tabular other_cols may differ across dup rows β€” we use values from the
# first occurrence. Use --no_dedup to run every row independently.
df_valid = df[~null_mask].copy()
if args.no_dedup:
df_unique = df_valid
n_unique = len(df_valid)
n_dups = 0
print(" Deduplication disabled (--no_dedup).")
else:
df_unique = df_valid.drop_duplicates(subset=[args.text_col], keep="first")
n_unique = len(df_unique)
n_dups = len(df_valid) - n_unique
print(" Valid rows : {:,}".format(len(df_valid)))
print(" Unique texts : {:,}".format(n_unique))
print(" Duplicate rows : {:,} (will be filled from unique results)".format(n_dups))
print(" Inference on : {:,} rows ({:.1f}% of total)".format(
n_unique, n_unique / n_total * 100))
texts = df_unique[args.text_col].fillna("").tolist()
n = len(texts) # n is now unique count
# ── Load meta-learner ─────────────────────────────────────────────────────
import joblib
bundle = joblib.load(cfg["meta_learner_path"])
meta = bundle["model"]
class_order = bundle["class_order"]
idx_to_lbl = bundle["idx_to_label"]
n_classes = bundle["n_classes"]
n_prob_cols = bundle["n_prob_cols"]
feature_names = bundle.get("feature_names") # exact training feature order
meta._n_prob_cols = n_prob_cols
if feature_names:
print(" Meta-learner expects {} features: {} prob/derived + {} embedding".format(
len(feature_names), n_prob_cols, len(feature_names) - n_prob_cols))
k_folds = cfg.get("k_folds", 5)
max_length = cfg.get("max_length", 256)
use_derived = cfg.get("use_derived_features", False)
# ── [1] Run each base model over the FULL dataset sequentially ────────────
# Models are loaded once and run end-to-end. This avoids reloading K fold
# checkpoints per chunk, which would be extremely slow for 1.7M rows.
# Memory: each model's output is (N, n_classes) float32 β€” ~39MB for 1.7M rows.
# Cache dir: store per-model prob arrays next to output so a crash can resume.
cache_dir = (Path(args.cache_dir) if args.cache_dir
else Path(args.output_path).parent / "inference_cache")
cache_dir.mkdir(parents=True, exist_ok=True)
def _model_cache_path(key):
safe = key.replace(":", "_").replace("/", "__")
return cache_dir / "{}.npy".format(safe)
def _frozen_cache_path():
return cache_dir / "_frozen_emb.npy"
print("\n[1] Running base models (full dataset, sequential)...")
print(" Resume cache dir: {}".format(cache_dir))
probs_by_key = {}
for m_cfg in cfg["models"]:
cname = m_cfg["clean_name"]
src = m_cfg["source"]
key = "{}:{}".format(src, cname)
task = m_cfg.get("task_type", "classification")
other_cols = m_cfg.get("other_cols", [])
cache_path = _model_cache_path(key)
# Resume: load cached probs if this model already completed
if cache_path.exists():
probs = np.load(str(cache_path))
if probs.shape[0] == n:
print(" [{}] {} β€” loaded from cache ({})".format(
src, cname, cache_path.name))
probs_by_key[key] = probs
continue
else:
print(" [{}] {} β€” cache shape mismatch ({}), re-running.".format(
src, cname, probs.shape))
tab_feats = None
if other_cols:
tab_arr = np.zeros((n, len(other_cols)), dtype=np.float32)
for i, col in enumerate(other_cols):
if col in df_unique.columns:
tab_arr[:, i] = df_unique[col].fillna(0).values.astype(np.float32)
else:
print(" [WARN] Tabular col '{}' missing for {} β€” using 0.".format(
col, cname))
# --- train/serve parity: standardize tab features exactly like the generator
# (ensemble_distillation_generator.py ~1833-1835: fillna(0) then StandardScaler)
import joblib as _joblib
_scaler_path = os.path.join(os.path.dirname(os.path.abspath(args.config)), 'tab_scaler.joblib')
if not os.path.exists(_scaler_path):
raise FileNotFoundError(
'other_cols=%s requires %s β€” heads were trained on standardized '
'features; refusing to feed raw values' % (other_cols, _scaler_path))
_bundle = _joblib.load(_scaler_path)
assert list(_bundle['other_cols']) == list(other_cols), (
'scaler cols %s != config other_cols %s' % (_bundle['other_cols'], other_cols))
tab_arr = _bundle['scaler'].transform(tab_arr).astype(np.float32)
tab_feats = tab_arr
t0 = time.perf_counter()
if task == "tfidf_lgbm":
print(" [{}] {} β€” tfidf_lgbm...".format(src, cname))
probs = run_tfidf_lgbm(m_cfg, texts, tab_feats, k_folds)
else:
print(" [{}] {} β€” {} folds...".format(src, cname, k_folds))
probs = run_transformer_model(
m_cfg, texts, tab_feats, max_length, device,
args.batch_size, k_folds,
num_workers=args.num_workers,
prefetch=args.prefetch,
token_cache_dir=cache_dir)
elapsed = (time.perf_counter() - t0) * 1000
mem_mb = probs.nbytes / 1e6
print(" done shape={} {:.0f}ms {:.1f}MB".format(
probs.shape, elapsed, mem_mb))
# Save to cache immediately β€” crash-safe
np.save(str(cache_path), probs)
print(" cached -> {}".format(cache_path.name))
probs_by_key[key] = probs
# ── [2] Frozen encoder embeddings (full dataset) ──────────────────────────
frozen_emb = None
if cfg.get("frozen_encoder"):
frozen_cache = _frozen_cache_path()
if frozen_cache.exists():
frozen_emb = np.load(str(frozen_cache))
if frozen_emb.shape[0] == n:
print("\n[2] Frozen embeddings loaded from cache ({}).".format(
frozen_cache.name))
else:
print("\n[2] Frozen cache shape mismatch β€” re-extracting...")
frozen_emb = None
if frozen_emb is None:
print("\n[2] Frozen encoder embeddings (full dataset)...")
t0 = time.perf_counter()
frozen_emb = get_frozen_embeddings(texts, cfg, device, args.batch_size,
cache_dir=args.cache_dir)
np.save(str(frozen_cache), frozen_emb)
print(" done shape={} {:.0f}ms {:.1f}MB cached->{}".format(
frozen_emb.shape,
(time.perf_counter() - t0) * 1000,
frozen_emb.nbytes / 1e6,
frozen_cache.name))
# Free the text list β€” no longer needed
del texts
gc.collect()
# ── [3] Chunked feature assembly + meta predict on UNIQUE texts ─────────
# Assemble features and run meta-learner in chunks over the unique-text rows.
# Results are stored as arrays indexed by unique-row position.
print("\n[3] Chunked meta-learner inference on {:,} unique texts "
"(chunk_size={})...".format(n_unique, args.chunk_size))
all_preds = np.empty(n_unique, dtype=np.int32)
all_proba = np.empty((n_unique, n_classes), dtype=np.float32)
n_chunks = (n_unique + args.chunk_size - 1) // args.chunk_size
# The bundle's feature_names lists ALL features (prob/derived + embeddings).
# The first n_prob_cols are the prob/derived features build_feature_vector
# must reproduce; the rest are embedding columns appended separately.
prob_feat_names = feature_names[:n_prob_cols] if feature_names else None
for chunk_idx in range(n_chunks):
start = chunk_idx * args.chunk_size
end = min(start + args.chunk_size, n_unique)
sl = slice(start, end)
chunk_probs = {k: v[sl] for k, v in probs_by_key.items()}
X_chunk, _ = build_feature_vector(
chunk_probs, class_order, n_classes, use_derived,
expected_names=prob_feat_names)
if frozen_emb is not None:
X_chunk = np.hstack([X_chunk, frozen_emb[sl]])
proba_chunk = meta.predict_proba(X_chunk)
all_preds[start:end] = np.argmax(proba_chunk, axis=1)
all_proba[start:end] = proba_chunk
if chunk_idx % 10 == 0 or chunk_idx == n_chunks - 1:
print(" chunk {}/{} rows {}-{} ({:.0f}%)".format(
chunk_idx + 1, n_chunks, start, end, end / n_unique * 100))
del X_chunk, proba_chunk
gc.collect()
# Free model prob arrays β€” no longer needed
del probs_by_key, frozen_emb
gc.collect()
# ── [4] Build unique-text result lookup and broadcast to all rows ─────────
print("\n[4] Broadcasting results to {:,} total rows...".format(n_total))
# Build a text -> (pred, proba) lookup using the unique results
unique_texts_list = df_unique[args.text_col].tolist()
text_to_pred = dict(zip(unique_texts_list, all_preds.tolist()))
text_to_proba = dict(zip(unique_texts_list, all_proba.tolist()))
del all_preds, all_proba, unique_texts_list
gc.collect()
# Unknown label index
# Normalise idx_to_lbl keys to int β€” the pickle may store them as int OR str,
# and inconsistent key types caused every label lookup to silently fall back
# to UNKNOWN. Build one canonical int-keyed map used everywhere below.
idx_to_lbl_int = {int(k): v for k, v in idx_to_lbl.items()}
print(" Label map: {}".format(
{k: idx_to_lbl_int[k] for k in sorted(idx_to_lbl_int)}))
unknown_idx = next(
(k for k, v in idx_to_lbl_int.items() if v == "UNKNOWN"),
n_classes - 1)
unknown_label = idx_to_lbl_int.get(unknown_idx, "UNKNOWN")
unknown_proba = [0.0] * n_classes
unknown_proba[unknown_idx] = 1.0
# Write output in chunks, reading original row index to broadcast
output_path = Path(args.output_path)
output_path.parent.mkdir(parents=True, exist_ok=True)
pred_cols = (["predicted_class", "predicted_label", "meta_confidence"] +
["prob_" + cls for cls in class_order])
first_chunk = True
label_counts = {}
out_chunks = (n_total + args.chunk_size - 1) // args.chunk_size
orig_texts = df[args.text_col].astype(str).str.strip().values
for chunk_idx in range(out_chunks):
start = chunk_idx * args.chunk_size
end = min(start + args.chunk_size, n_total)
out = {}
if extra_keep:
for col in extra_keep:
if col in df.columns:
out[col] = df[col].iloc[start:end].values
else:
out[col] = np.zeros(end - start, dtype=np.float32)
preds_out = []
labels_out = []
conf_out = []
proba_out = [[] for _ in range(n_classes)]
for row_text, is_null in zip(
orig_texts[start:end],
null_mask.values[start:end]):
if is_null or row_text.lower() == "none" or row_text == "":
# Null text β€” assign UNKNOWN
p_idx = unknown_idx
p_lbl = unknown_label
p_prob = unknown_proba
else:
p_idx = text_to_pred.get(row_text, unknown_idx)
p_lbl = idx_to_lbl_int.get(int(p_idx), unknown_label)
p_prob = text_to_proba.get(row_text, unknown_proba)
preds_out.append(p_idx)
labels_out.append(p_lbl)
conf_out.append(max(p_prob))
for i, v in enumerate(p_prob):
proba_out[i].append(v)
out["predicted_class"] = preds_out
out["predicted_label"] = labels_out
out["meta_confidence"] = conf_out
for i, cls in enumerate(class_order):
out["prob_" + cls] = proba_out[i]
chunk_df = pd.DataFrame(out)
# Track distribution
for lbl, cnt in chunk_df["predicted_label"].value_counts().items():
label_counts[lbl] = label_counts.get(lbl, 0) + cnt
# Write / append
try:
if first_chunk:
chunk_df.to_parquet(str(output_path), index=False,
engine="fastparquet")
else:
chunk_df.to_parquet(str(output_path), index=False,
engine="fastparquet", append=True)
except Exception:
chunk_path = output_path.parent / "_chunk_{:05d}.parquet".format(chunk_idx)
chunk_df.to_parquet(str(chunk_path), index=False)
if chunk_idx % 10 == 0 or chunk_idx == out_chunks - 1:
print(" wrote chunk {}/{} ({:.0f}%)".format(
chunk_idx + 1, out_chunks, end / n_total * 100))
first_chunk = False
del chunk_df
gc.collect()
# Merge loose chunk files if fastparquet wasn't available
chunk_files = sorted(output_path.parent.glob("_chunk_*.parquet"))
if chunk_files:
print(" Merging {} chunk files...".format(len(chunk_files)))
pd.concat([pd.read_parquet(f) for f in chunk_files],
ignore_index=True).to_parquet(str(output_path), index=False)
for f in chunk_files:
f.unlink()
# Keep the cache by default: base-model outputs and tokenisation are
# expensive and reusable for re-runs on the same pool (e.g. after a
# meta-learner swap, which needs no GPU work at all). Pass --clear_cache
# to remove it on success.
if args.clear_cache and cache_dir.exists():
import shutil
shutil.rmtree(cache_dir)
print(" Resume cache cleared (--clear_cache).")
else:
print(" Resume cache kept -> {}".format(cache_dir))
print("\n Predictions saved ->", output_path)
print(" Total rows : {:,}".format(n_total))
print(" Null rows (UNKNOWN): {:,}".format(n_null))
print(" Deduped rows saved : {:,}".format(n_dups))
print(" Label distribution :")
for lbl, cnt in sorted(label_counts.items(), key=lambda x: -x[1]):
print(" {:<20s} {:>8,} ({:.1f}%)".format(
lbl, cnt, cnt / n_total * 100))
print("="*60)
if __name__ == "__main__":
main()