docs: add dataset card front-matter, OA license note, and JSONL example
Browse files- Set language, tags, task_categories, and size_categories
- Add OA-only license notice (multiple upstream licenses)
- Provide JSONL record schema and example
- Prepare for MLM (DAPT/TAPT) usage
README.md
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---
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language:
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- en
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license: other
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pretty_name: "BIOBERT — Microbiology OA Full-Text Corpus"
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dataset_type: text
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task_categories:
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- fill-mask
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tags:
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- microbiology
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- open-access
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- pmc
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- europe-pmc
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- fulltext
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- mlm
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- pretraining
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- biobert
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- english
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size_categories:
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- unknown
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---
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# BIOBERT — Microbiology OA Full-Text Corpus
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**Purpose:** Provide an English **Open-Access–only** full-text corpus in microbiology and related domains for:
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- Domain/Task-Adaptive Pretraining (DAPT/TAPT) with **Masked Language Modeling (MLM)**
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- Fine-tuning BERT-style models such as BioBERT
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> ⚠️ **Copyright / License:** This repository includes **OA items only** (e.g., PMC / Europe PMC OA). Each item must be used under its **original upstream license**. The fields `license_type` and `license_url` are included in every record. This repository does **not** grant a new license for redistribution.
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## Data format
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Recommended file format: **JSON Lines (`.jsonl`)** — one document/section per line.
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**Example record**
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```json
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{
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"id": "pmcid:PMC1234567#sec3",
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"title": "Sample article title",
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"text": "full body text …",
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"source": "PMC",
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"pmcid": "PMC1234567",
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"doi": "10.xxxx/xxxx",
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"year": 2024,
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"journal": "Journal Name",
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"section": "body",
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"license_type": "CC-BY-4.0",
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"license_url": "https://creativecommons.org/licenses/by/4.0/",
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"url": "https://europepmc.org/…"
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}
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