diff --git "a/gh_obi.yaml" "b/gh_obi.yaml" new file mode 100644--- /dev/null +++ "b/gh_obi.yaml" @@ -0,0 +1,3495 @@ +dataset: + name: gh_obi +embeddings_frame: null +embedding_model: + name: 'openai:' +objects: +- id: https://api.github.com/repos/obi-ontology/obi/issues/1 + label: manufacturer_role +- id: https://api.github.com/repos/obi-ontology/obi/issues/10 + label: hospital +- id: https://api.github.com/repos/obi-ontology/obi/issues/100 + label: hybridized microarray +- id: https://api.github.com/repos/obi-ontology/obi/issues/1000 + label: 'NTR: magnetoencephalography' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1001 + label: Consider coordinating with Wikipedia +- id: https://api.github.com/repos/obi-ontology/obi/issues/1002 + label: 'Synonym request for specimen collection process ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1003 + label: Fix label whitespace +- id: https://api.github.com/repos/obi-ontology/obi/issues/1004 + label: Generate 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https://api.github.com/repos/obi-ontology/obi/issues/1020 + label: 'NTR: medication dose' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1021 + label: 'NTR: medication timepoint' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1022 + label: 'NTR: bacteriological assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1023 + label: 'NTR: genealogical record' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1024 + label: 'added FFPE class from #1019' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1025 + label: "Proposal for a new \u201Chas textual representation\u201D data property" +- id: https://api.github.com/repos/obi-ontology/obi/issues/1026 + label: Fix pato import +- id: https://api.github.com/repos/obi-ontology/obi/issues/1027 + label: Terms inferred as owl:Nothing +- id: https://api.github.com/repos/obi-ontology/obi/issues/1028 + label: Fix owl:Nothing reasoning +- id: 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https://api.github.com/repos/obi-ontology/obi/issues/1085 + label: 'NTR: perturbation' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1086 + label: 'NTR: Oxford Nanopore Sequencing Platforms' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1087 + label: 'Circulome-seq as a synonym for OBI:0002144, #872' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1088 + label: 'polyA+ & polyA- RNA-seq distinctions #863' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1089 + label: 'NTR: biological variation design' +- id: https://api.github.com/repos/obi-ontology/obi/issues/109 + label: fuzzy clustering +- id: https://api.github.com/repos/obi-ontology/obi/issues/1090 + label: 'NTR: population based design' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1091 + label: 'NTRs: document related publication' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1092 + label: 'NTR: individual organism specimen' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1093 + label: 'NTR: Giemsa stain assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1094 + label: 'NTR: number of generations' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1095 + label: 'NTR: RNA extraction with rRNA depletion (process)' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1096 + label: 'NTR: duration time of insecticide exposure' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1097 + label: 'NTRs: karyotype related' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1098 + label: 'NTR: amplicon sequencing' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1099 + label: responsible party role definition update +- id: https://api.github.com/repos/obi-ontology/obi/issues/11 + label: microarray (DNA microarray) +- id: https://api.github.com/repos/obi-ontology/obi/issues/110 + label: B transformation +- id: https://api.github.com/repos/obi-ontology/obi/issues/1100 + label: Berrios nov519 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1101 + label: 'NTR: MPRA (massively parallel reporter assay)' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1102 + label: 'NTR: PRO-cap' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1103 + label: 'The phrase "processual entity" in the definition for OBI: planned process' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1104 + label: Circulome-seq as a synonym for OBI:0002144, inc. reclassification +- id: https://api.github.com/repos/obi-ontology/obi/issues/1105 + label: 'polyA XXX sequening assays. via assays.tsv template, #863' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1106 + label: 'NTR: pooled clone sequencing' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1107 + label: OBI vs scicrunch for identifiers for sequencers +- id: https://api.github.com/repos/obi-ontology/obi/issues/1108 + label: 'OBI: organism and BFO: object' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1109 + label: add Giemsa stain assay to assay template +- id: https://api.github.com/repos/obi-ontology/obi/issues/111 + label: File Formats +- id: https://api.github.com/repos/obi-ontology/obi/issues/1110 + label: Add link to OBI Term ID Request sheet +- id: https://api.github.com/repos/obi-ontology/obi/issues/1111 + label: Add term 'individual organism specimen' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1112 + label: Add study-designs template to README +- id: https://api.github.com/repos/obi-ontology/obi/issues/1113 + label: '[WIP] Create devices and organizations templates' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1114 + label: Create devices and organizations templates +- id: https://api.github.com/repos/obi-ontology/obi/issues/1115 + label: 'NTR: counting assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1116 + label: Add range 'manufacturer' to 'is_manufactured_by' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1117 + label: 'NTRs: assay terms' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1118 + label: 2 new terms and a definition touchup +- id: https://api.github.com/repos/obi-ontology/obi/issues/1119 + label: NTR request "massively parallel reporter assay" +- id: https://api.github.com/repos/obi-ontology/obi/issues/112 + label: outlier_role +- id: https://api.github.com/repos/obi-ontology/obi/issues/1120 + label: 'Change label of OBI object property: supplies' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1121 + label: 'The ontology header is missing required metadata: title.' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1122 + label: Terms for 454 sequencers have the same definition +- id: https://api.github.com/repos/obi-ontology/obi/issues/1123 + label: Duplicate 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label: massively parallel reporter assay 2nd try +- id: https://api.github.com/repos/obi-ontology/obi/issues/1131 + label: 'Reimplement #1118 from master' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1132 + label: Update modules +- id: https://api.github.com/repos/obi-ontology/obi/issues/1133 + label: Add synonym 'DNA barcoding assay' (or change primary label) OBI_0001960 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1134 + label: DNA cleavage, restriction analysis - fix label, definition, placement in + hierarchy +- id: https://api.github.com/repos/obi-ontology/obi/issues/1135 + label: Review REO terms for adoption into OBI +- id: https://api.github.com/repos/obi-ontology/obi/issues/1136 + label: pseudovirus entry assay +- id: https://api.github.com/repos/obi-ontology/obi/issues/1137 + label: Add two device terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1138 + label: add planned process and objective terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1139 + label: Add VEuPathDB assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/114 + label: 'use of analyte_role in assays in which none is detected ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1140 + label: Update README.md +- id: https://api.github.com/repos/obi-ontology/obi/issues/1141 + label: Deprecated GO term +- id: https://api.github.com/repos/obi-ontology/obi/issues/1142 + label: Origin/ddooley 4 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1143 + label: Issues 1134 and 1136 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1144 + label: Update term import +- id: https://api.github.com/repos/obi-ontology/obi/issues/1145 + label: 'NTR: PLAC-seq ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1146 + label: Add script to sort templates and standardize quoting and line endings +- id: https://api.github.com/repos/obi-ontology/obi/issues/1147 + label: Add 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https://api.github.com/repos/obi-ontology/obi/issues/1155 + label: Update Travis CI badge in README +- id: https://api.github.com/repos/obi-ontology/obi/issues/1156 + label: Problematic terms in new OBI release (2020-04-09) +- id: https://api.github.com/repos/obi-ontology/obi/issues/1157 + label: 'Fix #1156, bad REO prefixes' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1158 + label: Add check for bad IRIs +- id: https://api.github.com/repos/obi-ontology/obi/issues/1159 + label: Move all obsolete terms to `obsolete.tsv`, add check +- id: https://api.github.com/repos/obi-ontology/obi/issues/116 + label: Definition of has_specified_input/output +- id: https://api.github.com/repos/obi-ontology/obi/issues/1160 + label: Add a check for bad IRIs +- id: https://api.github.com/repos/obi-ontology/obi/issues/1161 + label: Add all obsolete classes to template +- id: https://api.github.com/repos/obi-ontology/obi/issues/1162 + label: Create biopsy.tsv +- id: https://api.github.com/repos/obi-ontology/obi/issues/1163 + label: NTR Add OBI vacuum-assisted biopsy needle +- id: https://api.github.com/repos/obi-ontology/obi/issues/1164 + label: 'NTR: induced sputum specimen' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1165 + label: 'Update obi-edit.owl to fix #1120 (supplies --> provisions)' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1166 + label: Update README.md +- id: https://api.github.com/repos/obi-ontology/obi/issues/1167 + label: 'Request: consider broadening definition of OBI:device' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1168 + label: 'Fix definitions for #1126' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1169 + label: 'NTR: SPRITE assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/117 + label: related_to +- id: https://api.github.com/repos/obi-ontology/obi/issues/1170 + label: Passaging process +- id: 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https://api.github.com/repos/obi-ontology/obi/issues/118 + label: study roles +- id: https://api.github.com/repos/obi-ontology/obi/issues/1180 + label: request alternate term for OBI:0000366 'metabolite profiling assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1181 + label: 'Term request: surveillance process' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1182 + label: OBI:epitope +- id: https://api.github.com/repos/obi-ontology/obi/issues/1183 + label: Weird term stanza in obi.obo file +- id: https://api.github.com/repos/obi-ontology/obi/issues/1184 + label: 'fixed text description for OBI:0002305 per issue #1124' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1185 + label: 'replaced OBI health care provider role with OMRSE term as per #1154' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1186 + label: 'Term request: ''platelet-poor plasma preparation'' and ''platelet-poor plasma''' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1187 + label: Remove OIO terms when converting to OBO +- id: https://api.github.com/repos/obi-ontology/obi/issues/1188 + label: ordinal value specification and singleX ATAC +- id: https://api.github.com/repos/obi-ontology/obi/issues/1189 + label: 'Term request: estimated' +- id: https://api.github.com/repos/obi-ontology/obi/issues/119 + label: runs software +- id: https://api.github.com/repos/obi-ontology/obi/issues/1190 + label: 'add estimated value class OBI:0002749 for #1189' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1191 + label: New assays for CFDE +- id: https://api.github.com/repos/obi-ontology/obi/issues/1192 + label: 'NTR: CUT&RUN assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1193 + label: NTR Personal Protective Equipment +- id: https://api.github.com/repos/obi-ontology/obi/issues/1194 + label: NTR specimen collection device and subclasses +- id: https://api.github.com/repos/obi-ontology/obi/issues/1195 + label: 'NTR: Metatranscriptome Profiling' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1196 + label: Berrios072820 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1197 + label: Add specimens from TURBO to OBI +- id: https://api.github.com/repos/obi-ontology/obi/issues/1198 + label: derives from semantics for processed specimens? +- id: https://api.github.com/repos/obi-ontology/obi/issues/1199 + label: Mam20200805 +- id: https://api.github.com/repos/obi-ontology/obi/issues/12 + label: Concentration quality and assay-derived info content entity +- id: https://api.github.com/repos/obi-ontology/obi/issues/120 + label: has parameter +- id: https://api.github.com/repos/obi-ontology/obi/issues/1200 + label: 'NTRs: light source terms' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1201 + label: Remove non-English annotations from OBO imports +- id: https://api.github.com/repos/obi-ontology/obi/issues/1202 + label: 'NTR: "presence or over-threshold value specification"' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1203 + label: 'NTR: Immunoassay process' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1204 + label: Reserve OBI ID range for assays being modelled by the PennTURBO team +- id: https://api.github.com/repos/obi-ontology/obi/issues/1205 + label: Update to IAO 2020-06-10 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1206 + label: 'ordinal or over-threshold value specification #1202' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1207 + label: LOINC imports +- id: https://api.github.com/repos/obi-ontology/obi/issues/1208 + label: OntoFox import terms required by assays from PennTURBO team +- id: https://api.github.com/repos/obi-ontology/obi/issues/1209 + label: Remove non-English annotations from OBO import +- id: https://api.github.com/repos/obi-ontology/obi/issues/121 + label: has_vendor, has provider +- id: https://api.github.com/repos/obi-ontology/obi/issues/1210 + label: Update README.md +- id: https://api.github.com/repos/obi-ontology/obi/issues/1211 + label: Add a views task to the Makefile +- id: https://api.github.com/repos/obi-ontology/obi/issues/1212 + label: 'Add presence or over-threshold value specification #1202' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1213 + label: add 3 karyotype related terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1214 + label: 'Single-value binding of antibody with reporter to antigen assay #1203' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1215 + label: Replace obsolete GO 'core promoter binding' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1216 + label: Update most of the OntoFox imports +- id: https://api.github.com/repos/obi-ontology/obi/issues/1217 + label: NTRs for arthropod specimen collection +- id: https://api.github.com/repos/obi-ontology/obi/issues/1218 + label: "Resolves #1186: Create classes 'platelet-poor plasma preparation proc\u2026" +- id: https://api.github.com/repos/obi-ontology/obi/issues/1219 + label: add 'mass per unit volume' to OntoFox input for UO +- id: https://api.github.com/repos/obi-ontology/obi/issues/122 + label: has model +- id: https://api.github.com/repos/obi-ontology/obi/issues/1220 + label: When imported via OntoFox, UO's 'mass per unit volume' loses its label +- id: https://api.github.com/repos/obi-ontology/obi/issues/1221 + label: Exclude 'dataset creating' from OBI core +- id: https://api.github.com/repos/obi-ontology/obi/issues/1222 + label: Release candidate 2020-08-24 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1223 + label: New terms task +- id: https://api.github.com/repos/obi-ontology/obi/issues/1224 + label: Create a "base" file +- id: https://api.github.com/repos/obi-ontology/obi/issues/1225 + label: Add a base file to views +- id: https://api.github.com/repos/obi-ontology/obi/issues/1226 + label: New terms for cell gating +- id: https://api.github.com/repos/obi-ontology/obi/issues/1227 + label: remote patient assessment +- id: https://api.github.com/repos/obi-ontology/obi/issues/1228 + label: Term "Antigen binding" subclass of "molecular function"? +- id: https://api.github.com/repos/obi-ontology/obi/issues/1229 + label: vial and chromatography device +- id: https://api.github.com/repos/obi-ontology/obi/issues/123 + label: performed_by/acts_as +- id: https://api.github.com/repos/obi-ontology/obi/issues/1230 + label: Provide patterns for relating absence of actionable data with assay "successfulness" +- id: https://api.github.com/repos/obi-ontology/obi/issues/1231 + label: 'New terms, issue #1176' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1232 + label: Does OBI want the following sequence assembly datums? +- id: https://api.github.com/repos/obi-ontology/obi/issues/1233 + label: 'NTR: study group roles' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1234 + label: ' in vitro model and in vivo model ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1235 + label: new OBI terms for child consent related ? +- id: https://api.github.com/repos/obi-ontology/obi/issues/1236 + label: 'surveillance process added #1181' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1237 + label: Issue1233 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1238 + label: xCELLigence +- id: https://api.github.com/repos/obi-ontology/obi/issues/1239 + label: Added light source terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/124 + label: is_concretization_of +- id: https://api.github.com/repos/obi-ontology/obi/issues/1240 + label: Clarify the definition of Cytometer under device/measurement device +- id: https://api.github.com/repos/obi-ontology/obi/issues/1241 + label: New sample-collection template & additions to device template +- id: https://api.github.com/repos/obi-ontology/obi/issues/1242 + label: population based design issue 1090 and updated modules +- id: https://api.github.com/repos/obi-ontology/obi/issues/1243 + label: 'Draft NTRs for LINCS assays ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1244 + label: Added relationship 'is_model_output_for' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1245 + label: Fix 'antigen binding' placement +- id: https://api.github.com/repos/obi-ontology/obi/issues/1246 + label: Clarification regarding 'OBI:specimen identifier' and 'OMIABIS:specimen ID' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1247 + label: '"nasal cavity" (UBERON:0001707) has no parent' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1248 + label: updates an alternative term for "nasopharyngeal aspirate specimen" +- id: https://api.github.com/repos/obi-ontology/obi/issues/1249 + label: 'NTR: Illumina MiniSeq sequencing platform' +- id: https://api.github.com/repos/obi-ontology/obi/issues/125 + label: output/input data +- id: https://api.github.com/repos/obi-ontology/obi/issues/1250 + label: 'NTR: endotracheal aspirate specimen & endotracheal tube specimen' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1251 + label: 'NTR: Capture Hi-C' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1252 + label: Question about 'sequence annotation reporting role' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1253 + label: 'New clinical analyte assays template: bottom up from EHR' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1254 + label: Assay axiomatization is complex and frequently over-specified +- id: https://api.github.com/repos/obi-ontology/obi/issues/1255 + label: Move RNA-seq assay under RNA sequencing assay +- id: https://api.github.com/repos/obi-ontology/obi/issues/1256 + label: endotracheal aspirate specimen & endotracheal tube specimen +- id: https://api.github.com/repos/obi-ontology/obi/issues/1257 + label: 'NTR: endotracheal tube' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1258 + label: 'NTR: single-nucleus RNA sequencing assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1259 + label: 'NTR: fibroblast specimen' +- id: https://api.github.com/repos/obi-ontology/obi/issues/126 + label: results_from +- id: https://api.github.com/repos/obi-ontology/obi/issues/1260 + label: 'NTR: "chorionic villi sample - blood" and "fibroblasts - blood"' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1261 + label: endotracheal specimens +- id: https://api.github.com/repos/obi-ontology/obi/issues/1262 + label: 'NTR: altitude measurement datum' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1263 + label: Definition and axioms of 'scalar measurement datum' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1264 + label: Definition and usage of 'scalar score from composite inputs' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1265 + label: I think I'm misusing ChEBI "...molecular entities" +- id: https://api.github.com/repos/obi-ontology/obi/issues/1266 + label: Fix definitions for cytometer and cytometry assay +- id: https://api.github.com/repos/obi-ontology/obi/issues/1267 + label: Test candidate PR workflow +- id: https://api.github.com/repos/obi-ontology/obi/issues/1268 + label: 2020-12-16 release candidate +- id: https://api.github.com/repos/obi-ontology/obi/issues/1269 + label: Create candidate task to make PR for release +- id: https://api.github.com/repos/obi-ontology/obi/issues/127 + label: objective driven process +- id: https://api.github.com/repos/obi-ontology/obi/issues/1270 + label: 2020-12-16 release candidate +- id: https://api.github.com/repos/obi-ontology/obi/issues/1271 + label: Delete old branches +- id: https://api.github.com/repos/obi-ontology/obi/issues/1272 + label: Add ID annotations to OBI? +- id: https://api.github.com/repos/obi-ontology/obi/issues/1273 + label: Add make sort step to instructions +- id: https://api.github.com/repos/obi-ontology/obi/issues/1274 + label: PPE and specimen collection device terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1275 + label: Revise equivalency axiom for 'count' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1276 + label: Subtypes of 'scalar measurement datum' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1277 + label: '''longitude coordinate measurement datum'' and ''latitude coordinate measurement + datum''' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1278 + label: Column in sample-collection template for specimen type (output) +- id: https://api.github.com/repos/obi-ontology/obi/issues/1279 + label: This is a set of 8 protein/gene sequence start/stop terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/128 + label: fluorochrome +- id: https://api.github.com/repos/obi-ontology/obi/issues/1280 + label: 'altitude measurement datum, issue #1262' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1281 + label: Fix links to view/ in readme.md +- id: https://api.github.com/repos/obi-ontology/obi/issues/1282 + label: misspelling in specimen collection device's class expression? +- id: https://api.github.com/repos/obi-ontology/obi/issues/1283 + label: Remove logical definition from textual definition of 'specimen collection + device' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1284 + label: 'Add terms required for #1253 to OntoFox inputs file' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1285 + label: 'OntoFox inputs for new assays from TURBO, issue #1284' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1286 + label: Terms to move from FLU to OBI +- id: https://api.github.com/repos/obi-ontology/obi/issues/1287 + label: Add OBI:0002984 'capture Hi-C assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1288 + label: 'NTR: blood meal host organism and related data items' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1289 + label: Define subtypes of 'organization' +- id: https://api.github.com/repos/obi-ontology/obi/issues/129 + label: label_role +- id: https://api.github.com/repos/obi-ontology/obi/issues/1290 + label: 'NTRs: Imaging assays' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1291 + label: Add three new imaging assays + one device +- id: https://api.github.com/repos/obi-ontology/obi/issues/1292 + label: simplifying axiom for adapter-sequence trimming +- id: https://api.github.com/repos/obi-ontology/obi/issues/1293 + label: simplifying axiom for adapter-sequence trimming, take 2 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1294 + label: file merge (OBI:0002566) has axioms that are more specific than label/def + suggests +- id: https://api.github.com/repos/obi-ontology/obi/issues/1295 + label: Discussion of term Hospital and similar terms in OMRSE +- id: https://api.github.com/repos/obi-ontology/obi/issues/1296 + label: 'NTR: Specimen collection duration' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1297 + label: 'NTR: placental blood specimen' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1298 + label: Add OBI:0002988 'duration of specimen collection' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1299 + label: scalar measurement datum adjustment, issue 1263 +- id: https://api.github.com/repos/obi-ontology/obi/issues/13 + label: documentation of "material" +- id: https://api.github.com/repos/obi-ontology/obi/issues/130 + label: project file annotations +- id: https://api.github.com/repos/obi-ontology/obi/issues/1300 + label: Add material supplier, fix organization roles +- id: https://api.github.com/repos/obi-ontology/obi/issues/1301 + label: Removing a unit label from scalar value spec. +- id: https://api.github.com/repos/obi-ontology/obi/issues/1302 + label: 'NTRs: additional arthropod collection terms' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1303 + label: enzymatic activity assay NTR +- id: https://api.github.com/repos/obi-ontology/obi/issues/1304 + label: Create mappings between OBI and BAO +- id: https://api.github.com/repos/obi-ontology/obi/issues/1305 + label: Add OBI:0002988 'duration of specimen collection' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1306 + label: Organism and viruses +- id: https://api.github.com/repos/obi-ontology/obi/issues/1307 + label: 'new term requests receptor repertoire sequencing ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1308 + label: new term requests for ImmPort +- id: https://api.github.com/repos/obi-ontology/obi/issues/1309 + label: '''clinical chemistry assay'' definition does not match axiom' +- id: https://api.github.com/repos/obi-ontology/obi/issues/131 + label: modifications to 'has objective' relation +- id: https://api.github.com/repos/obi-ontology/obi/issues/1310 + label: Consider generalizing the definition of 'hematology assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1311 + label: personal protection equipment part 2 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1312 + label: Two new sequencing assay terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1313 + label: 'enzyme activity assay #1303' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1314 + label: fixed analyte to be parathyroid hormone +- id: https://api.github.com/repos/obi-ontology/obi/issues/1315 + label: rearrange Header columns in epitope-assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/1316 + label: 'Added blood meal terms as per #1288' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1317 + label: arthropod collection terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1318 + label: NTR insulin concentration measurement assay and data item +- id: https://api.github.com/repos/obi-ontology/obi/issues/1319 + label: scalar rate rename +- id: https://api.github.com/repos/obi-ontology/obi/issues/132 + label: has_specified_input and output relations +- id: https://api.github.com/repos/obi-ontology/obi/issues/1320 + label: 'NTR: fluorogenic PCR assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1321 + label: Split OBO imports into individual modules +- id: https://api.github.com/repos/obi-ontology/obi/issues/1322 + label: 'NTR: terms from VEuPathDB Ontology of potential general interest' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1323 + label: epitope-assays.tsv columns cleanup +- id: https://api.github.com/repos/obi-ontology/obi/issues/1324 + label: 'WIP: Import workflow update' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1325 + label: 'NTR: barcode target locus role and oligonucleotide primer set' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1326 + label: Update epitope-assays.owl with changes +- id: https://api.github.com/repos/obi-ontology/obi/issues/1327 + label: Update clinical assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/1328 + label: Revisit our use of reasoners +- id: https://api.github.com/repos/obi-ontology/obi/issues/1329 + label: Release candidate 2021-04-06 +- id: https://api.github.com/repos/obi-ontology/obi/issues/133 + label: Device setting +- id: https://api.github.com/repos/obi-ontology/obi/issues/1330 + label: Standardize annotations in ROBOT templates +- id: https://api.github.com/repos/obi-ontology/obi/issues/1331 + label: '''clinical chemistry assay'' axiom fix' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1332 + label: Assess Eagle-i Resource Ontology terms (ERO) +- id: https://api.github.com/repos/obi-ontology/obi/issues/1333 + label: fix range for file merge +- id: https://api.github.com/repos/obi-ontology/obi/issues/1334 + label: Update sequence-analysis.owl +- id: https://api.github.com/repos/obi-ontology/obi/issues/1335 + label: 'Added barcode related terms per #1325' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1336 + label: Clean up some unparsed triple errors +- id: https://api.github.com/repos/obi-ontology/obi/issues/1337 + label: Add pooled clone seq assay Issue 1106 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1338 + label: 'NT ''fluorogenic PCR assay'' #1320' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1339 + label: Write script to say where a term is defined (and used?) +- id: https://api.github.com/repos/obi-ontology/obi/issues/134 + label: 'measured data and derived data ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1340 + label: Add locate script +- id: https://api.github.com/repos/obi-ontology/obi/issues/1341 + label: Write a script to relabel a term +- id: https://api.github.com/repos/obi-ontology/obi/issues/1342 + label: Fix devices template +- id: https://api.github.com/repos/obi-ontology/obi/issues/1343 + label: Switch to GitHub Actions +- id: https://api.github.com/repos/obi-ontology/obi/issues/1344 + label: Add script to relabel terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1345 + label: 'bioreactor: has strange definition, and consider coordinating with ENVO' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1346 + label: "Relabel \u201C3D structure determination assay\u201D and its subclasses,\ + \ and adding new term." +- id: https://api.github.com/repos/obi-ontology/obi/issues/1347 + label: Remove editor notes from some devices +- id: https://api.github.com/repos/obi-ontology/obi/issues/1348 + label: 'NTR: genotyping by PCR assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1349 + label: 'Remove editor comment from def, fixes #1345' +- id: https://api.github.com/repos/obi-ontology/obi/issues/135 + label: comments from Robert H. +- id: https://api.github.com/repos/obi-ontology/obi/issues/1350 + label: 'Remove strange rdf:type axioms, fixes #1336' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1351 + label: Add workflow to make OBI Excel sheet for editing templates +- id: https://api.github.com/repos/obi-ontology/obi/issues/1352 + label: 'adds ''measurand'' column to assays.tsv (issue #1062)' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1353 + label: adds 'material processing technique' column to epitope-assays.tsv +- id: https://api.github.com/repos/obi-ontology/obi/issues/1354 + label: NTRs from NGBO ontology +- id: https://api.github.com/repos/obi-ontology/obi/issues/1355 + label: 'add term: genotyping by PCR assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1356 + label: medical device +- id: https://api.github.com/repos/obi-ontology/obi/issues/1357 + label: 'NTR: coma severity assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1358 + label: Bio-layer interferometry assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/1359 + label: Consider removing "SPLIT" from Parent columns +- id: https://api.github.com/repos/obi-ontology/obi/issues/136 + label: original definition and editor of contributed terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1360 + label: '''pathogen detection assay'' should be child of ''organism identification + assay''' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1361 + label: Fix spelling of 'Phillip Lord' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1362 + label: 'Discussed on the call 10/19: To clearly differentiate from STATO term and + make OBI specific, the relationship label should be tightened to be ''is experimental + model output for'', and the domain being ''measurement datum''' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1363 + label: 'Here is an attempt at a definition. I forgot if/how we were trying to have + ''aristotelian'' style definitions for relationships, but I tried:' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1364 + label: NTRs for 3D neuron morphology determination assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/1365 + label: western blot assay questions +- id: https://api.github.com/repos/obi-ontology/obi/issues/1366 + label: questions about "induced mutation" +- id: https://api.github.com/repos/obi-ontology/obi/issues/1367 + label: question about "site directed mutagenesis" definition/usage +- id: https://api.github.com/repos/obi-ontology/obi/issues/1368 + label: equivalence axiom for 'mass spectrometry assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1369 + label: New assay terms & updates from IGS +- id: https://api.github.com/repos/obi-ontology/obi/issues/137 + label: action specification +- id: https://api.github.com/repos/obi-ontology/obi/issues/1370 + label: 'NTR: laboratory-based population' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1371 + label: Request to improve label of OBI_0003005 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1372 + label: Update parent & definition of 'pathogen detection assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1373 + label: 'removes "SPLIT" from parent column ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1374 + label: adds 'coma severity assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1375 + label: Dual injections from FOODON and OBI into GAZ causes incoherency +- id: https://api.github.com/repos/obi-ontology/obi/issues/1376 + label: TUNEL assay term request +- id: https://api.github.com/repos/obi-ontology/obi/issues/1377 + label: Update assays.tsv (training) +- id: https://api.github.com/repos/obi-ontology/obi/issues/1378 + label: VEuPath terms for obi-dev +- id: https://api.github.com/repos/obi-ontology/obi/issues/1379 + label: Request to import OGMS 'clinical laboratory test' +- id: https://api.github.com/repos/obi-ontology/obi/issues/138 + label: NGRL testing technologies +- id: https://api.github.com/repos/obi-ontology/obi/issues/1380 + label: 'NTR: 3D determination assays and material entity terms' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1381 + label: Device terms from VEuPath +- id: https://api.github.com/repos/obi-ontology/obi/issues/1382 + label: Sequence analysis term from VEuPath +- id: https://api.github.com/repos/obi-ontology/obi/issues/1383 + label: Biobank specimen terms from VEuPath +- id: https://api.github.com/repos/obi-ontology/obi/issues/1384 + label: Collection terms from VEuPath +- id: https://api.github.com/repos/obi-ontology/obi/issues/1385 + label: 'NTR: TUNEL assay [Label: training]' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1386 + label: 'Update assays.tsv with new TUNEL assay term, issue #1385 [Label: training]' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1387 + label: Second attempt at assays.tsv update +- id: https://api.github.com/repos/obi-ontology/obi/issues/1388 + label: Clarify steps to edit templates with Excel +- id: https://api.github.com/repos/obi-ontology/obi/issues/1389 + label: induced mutation fixes +- id: https://api.github.com/repos/obi-ontology/obi/issues/139 + label: nutrient in role branch +- id: https://api.github.com/repos/obi-ontology/obi/issues/1390 + label: 'Terms from FLU #1286' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1391 + label: Assay terms from VEuPath +- id: https://api.github.com/repos/obi-ontology/obi/issues/1392 + label: lab-based population issue 1370 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1393 + label: CFDE NTRs for HuBMAP project +- id: https://api.github.com/repos/obi-ontology/obi/issues/1394 + label: Add IDO 'antibacterial' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1395 + label: RNA sequencing assay question +- id: https://api.github.com/repos/obi-ontology/obi/issues/1396 + label: 'NTR: methods of generating alleles in model organisms' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1397 + label: Request to import terms from COB +- id: https://api.github.com/repos/obi-ontology/obi/issues/1398 + label: 3 new assays for ImmPort +- id: https://api.github.com/repos/obi-ontology/obi/issues/1399 + label: Generalize "cytometric bead array assay" definition and add two subclasses +- id: https://api.github.com/repos/obi-ontology/obi/issues/14 + label: objective model +- id: https://api.github.com/repos/obi-ontology/obi/issues/140 + label: 'New term: DMEM' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1400 + label: Add 'Illumina MiniSeq' to devices +- id: https://api.github.com/repos/obi-ontology/obi/issues/1401 + label: cytometric bead array assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/1402 + label: Imports COB term, adds 3 molecular complex terms, and 2 assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/1403 + label: Question about "fluorescence detection assay" logic +- id: https://api.github.com/repos/obi-ontology/obi/issues/1404 + label: Fixes output of 'fluorescence detection assay" +- id: https://api.github.com/repos/obi-ontology/obi/issues/1405 + label: Update biopsy.tsv +- id: https://api.github.com/repos/obi-ontology/obi/issues/1406 + label: duplicate specified i/o definition fix +- id: https://api.github.com/repos/obi-ontology/obi/issues/1407 + label: Update biopsy.owl +- id: https://api.github.com/repos/obi-ontology/obi/issues/1408 + label: Release candidate 2021-08-16 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1409 + label: Axiom for 'antibiotic administration process' +- id: https://api.github.com/repos/obi-ontology/obi/issues/141 + label: Cell culture infers as a chemical solution +- id: https://api.github.com/repos/obi-ontology/obi/issues/1410 + label: NTR 3D neuron morphology assays issue 1364 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1411 + label: 'Gel electrophoresis issue #1125' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1412 + label: 'Update devices.tsv issue #1125' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1413 + label: Release Candidate 2021-08-18 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1414 + label: NTR for CMI-PB +- id: https://api.github.com/repos/obi-ontology/obi/issues/1415 + label: 'imports term ''complex of molecular entities'' ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1416 + label: 'NTR for IEDB: binding datum and assays ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1417 + label: Molecular complexes +- id: https://api.github.com/repos/obi-ontology/obi/issues/1418 + label: ' two 3D determination assays' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1419 + label: Make equivalence axiom for 'mass spectrometry assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/142 + label: Chimera +- id: https://api.github.com/repos/obi-ontology/obi/issues/1420 + label: 'adding terms for #1396' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1421 + label: Immune epitope assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/1422 + label: 3 d assays issue 1346 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1423 + label: 1416#issuecomment-912060848 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1424 + label: 80 assays for CEBS +- id: https://api.github.com/repos/obi-ontology/obi/issues/1425 + label: Binding datum terms issue 1416 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1426 + label: Cytometric bead array assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/1427 + label: Terms for CMI-PB +- id: https://api.github.com/repos/obi-ontology/obi/issues/1428 + label: 'NTR: blood assay datum' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1429 + label: 'NTRs: more specimen assay terms' +- id: https://api.github.com/repos/obi-ontology/obi/issues/143 + label: Population +- id: https://api.github.com/repos/obi-ontology/obi/issues/1430 + label: 'NTR: in silico' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1431 + label: multiplex PCR assay terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1432 + label: Additional specimen assay terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1433 + label: RNA sequencing subclasses +- id: https://api.github.com/repos/obi-ontology/obi/issues/1434 + label: Binding datum and assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/1435 + label: Replaces hospital with 'hospital organization' from OMRSE. +- id: https://api.github.com/repos/obi-ontology/obi/issues/1436 + label: 'NTR: Laboratory' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1437 + label: T cell cytokine assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/1438 + label: Update import OMIABIS term IDs +- id: https://api.github.com/repos/obi-ontology/obi/issues/1439 + label: 'NTRs: membrane feeding device, membrane feeding assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/144 + label: Sample population +- id: https://api.github.com/repos/obi-ontology/obi/issues/1440 + label: add term 'laboratory organization' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1441 + label: Specimen assay data terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1442 + label: membrane feeding device/assay & multiplex PCR assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/1443 + label: 'NTR: antibodies from lymphocyte secretions assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1444 + label: 'NTR: modified acid stain microscopy' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1445 + label: Fix leading whitespace in obsolescence reason +- id: https://api.github.com/repos/obi-ontology/obi/issues/1446 + label: IEDB cytometric bead array assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/1447 + label: adds in silico design +- id: https://api.github.com/repos/obi-ontology/obi/issues/1448 + label: Cell gating & Cytometry Synonyms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1449 + label: 'Revision for new vial hierarchy issue #1229' +- id: https://api.github.com/repos/obi-ontology/obi/issues/145 + label: soil podzol +- id: https://api.github.com/repos/obi-ontology/obi/issues/1450 + label: Fix typo in epitope assays template +- id: https://api.github.com/repos/obi-ontology/obi/issues/1451 + label: added 'modified acid-fast stain microscopy assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1452 + label: IEDB alternative terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1453 + label: OBI "device" should be renamed? +- id: https://api.github.com/repos/obi-ontology/obi/issues/1454 + label: Write script to determine which new terms have been merged +- id: https://api.github.com/repos/obi-ontology/obi/issues/1455 + label: Add script to fill in term reservation sheet +- id: https://api.github.com/repos/obi-ontology/obi/issues/1456 + label: 'NTRs: antibody assay kits & their manufacturers' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1457 + label: 'NTR: sequencing assays' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1458 + label: Question regarding intra cellular electrophysiology recording assay hierarchy +- id: https://api.github.com/repos/obi-ontology/obi/issues/1459 + label: Change to 'viral hemagglutination inhibition assay' definition +- id: https://api.github.com/repos/obi-ontology/obi/issues/146 + label: waiting - problematic +- id: https://api.github.com/repos/obi-ontology/obi/issues/1460 + label: Add material processing template +- id: https://api.github.com/repos/obi-ontology/obi/issues/1461 + label: linking immunohistochemistry ( OBI:0001986) with histological assay (OBI:0600020) +- id: https://api.github.com/repos/obi-ontology/obi/issues/1462 + label: Binding datum changes +- id: https://api.github.com/repos/obi-ontology/obi/issues/1463 + label: Add checks for biopsy, device, and organization modules +- id: https://api.github.com/repos/obi-ontology/obi/issues/1464 + label: How to encode a ion flux assay using OBI? +- id: https://api.github.com/repos/obi-ontology/obi/issues/1465 + label: Add specimen-assay-data module +- id: https://api.github.com/repos/obi-ontology/obi/issues/1466 + label: antibodies from lymphocyte supernatant assay +- id: https://api.github.com/repos/obi-ontology/obi/issues/1467 + label: OBI device tree insufficient +- id: https://api.github.com/repos/obi-ontology/obi/issues/1468 + label: Remove whitespace around pipes in templates +- id: https://api.github.com/repos/obi-ontology/obi/issues/1469 + label: immune epitope binding assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/147 + label: Fragment derived from protein +- id: https://api.github.com/repos/obi-ontology/obi/issues/1470 + label: Automatically remove whitespace surrounding pipe splits in templates +- id: https://api.github.com/repos/obi-ontology/obi/issues/1471 + label: New terms & updates for CFDE +- id: https://api.github.com/repos/obi-ontology/obi/issues/1472 + label: CFDE NTRs for 4DN project +- id: https://api.github.com/repos/obi-ontology/obi/issues/1473 + label: Ignore .venv/ +- id: https://api.github.com/repos/obi-ontology/obi/issues/1474 + label: Release Candidate 2022-01-03 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1475 + label: Bad equivalent classes 'calcium cation assay' and 'ionized calcium assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1476 + label: Bad equivalent classes 'lower respiratory tract specimen' and 'lower respiratory + tract aspirate specimen'. +- id: https://api.github.com/repos/obi-ontology/obi/issues/1477 + label: Automatically reject equivalent named classes +- id: https://api.github.com/repos/obi-ontology/obi/issues/1478 + label: Never allow equivalent classes +- id: https://api.github.com/repos/obi-ontology/obi/issues/1479 + label: Move all obsolete terms into templates +- id: https://api.github.com/repos/obi-ontology/obi/issues/148 + label: Polyacrylamide gel +- id: https://api.github.com/repos/obi-ontology/obi/issues/1480 + label: Device utilizes material, and device capable of/enables process relationships +- id: https://api.github.com/repos/obi-ontology/obi/issues/1481 + label: Integrating MRIO with OBI +- id: https://api.github.com/repos/obi-ontology/obi/issues/1482 + label: 'NTR: cytotoxic T cell degranulation terms ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1483 + label: Fix bad equivalent calcium assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/1484 + label: amphiregulin production assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/1485 + label: Add upper/lower limit of detection terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1486 + label: Older release PURLs don't work +- id: https://api.github.com/repos/obi-ontology/obi/issues/1487 + label: removes equivalence axiom from OBI:0001317 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1488 + label: 'Detection Technique Definition ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1489 + label: Review 'assay detecting a molecular label' +- id: https://api.github.com/repos/obi-ontology/obi/issues/149 + label: Pool_of_specimens +- id: https://api.github.com/repos/obi-ontology/obi/issues/1490 + label: Question regarding OBI:organization and organization rules +- id: https://api.github.com/repos/obi-ontology/obi/issues/1491 + label: 'NTR: venous blood microbiology assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1492 + label: 'viral hemagglutination inhibition assay def change ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1493 + label: Definiton corrections to match label/axiom +- id: https://api.github.com/repos/obi-ontology/obi/issues/1494 + label: fluorescence & radioactivity detection binding assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/1495 + label: add 'venous blood microbiology assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1496 + label: adds 4 T cell degranulation terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1497 + label: 2 terms with same definition +- id: https://api.github.com/repos/obi-ontology/obi/issues/1498 + label: 'fluorescence & radioactivity binding assays ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1499 + label: electrophysiology assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/15 + label: Remove explicit disjoints and write script to add them +- id: https://api.github.com/repos/obi-ontology/obi/issues/150 + label: Should scattered_molecular_aggregate be a defined class? +- id: https://api.github.com/repos/obi-ontology/obi/issues/1500 + label: OBI import is causing DL violations +- id: https://api.github.com/repos/obi-ontology/obi/issues/1501 + label: Fix DL violations +- id: https://api.github.com/repos/obi-ontology/obi/issues/1502 + label: 'NTR: high throughput multiplexed assays' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1503 + label: deprecated two terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1504 + label: Add logical axioms associated with 'data transformation' back? +- id: https://api.github.com/repos/obi-ontology/obi/issues/1505 + label: 'NTR: diagnostic process and diagnosis' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1506 + label: data transformation and assay terms for tandom mass spectrometry and related + terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1507 + label: fix detection technique in assays.tsv for 'insecticide resistance by PCR-RELP + assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1508 + label: high throughput multiplexed assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/1509 + label: 'Fixes duplicate definition of ''Centers for Disease Control and Prevention + light trap'' ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/151 + label: Obsolete Person and use NCBITaxon:9606 instead +- id: https://api.github.com/repos/obi-ontology/obi/issues/1510 + label: 'First PR for MRIO, including image data set and child MRI terms, issue #1481' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1511 + label: 'NTR: interpretation of clinical variant ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1512 + label: 'NTR: DNA processed specimen' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1513 + label: Tested PR for MRIO, including image data set and child MRI terms, per 1481 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1514 + label: Clarify that a senior developer will merge PRs +- id: https://api.github.com/repos/obi-ontology/obi/issues/1515 + label: 'NTR: milk assay datum, umbilical cord blood assay datum ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1516 + label: Add 'target environment' column to assays template +- id: https://api.github.com/repos/obi-ontology/obi/issues/1517 + label: GO:0040030 is obsolete, but not properly marked obsolete in OBI +- id: https://api.github.com/repos/obi-ontology/obi/issues/1518 + label: 'add ''milk assay datum'', #1515' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1519 + label: add two diagnosis related terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/152 + label: Cellular_component +- id: https://api.github.com/repos/obi-ontology/obi/issues/1520 + label: add two diagnosis related terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1521 + label: Detection Technique +- id: https://api.github.com/repos/obi-ontology/obi/issues/1522 + label: Adding catheter device +- id: https://api.github.com/repos/obi-ontology/obi/issues/1523 + label: 'NTR: Mosquito Magnet Liberty Plus trap' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1524 + label: adds new term 'assay kit' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1525 + label: Remove GO:0040029 and GO:0040030 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1526 + label: 'NTRs: antigen specific antibodies in blood assay, + associated data items' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1527 + label: Created data-sets template and added image data sets from MRIO +- id: https://api.github.com/repos/obi-ontology/obi/issues/1528 + label: 'NTR: mid-upper arm circumference datum' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1529 + label: Create LICENSE +- id: https://api.github.com/repos/obi-ontology/obi/issues/153 + label: achieves_planned_objective +- id: https://api.github.com/repos/obi-ontology/obi/issues/1530 + label: 'cytotoxic T cell degranulation assays ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1531 + label: fluorescence & radioactivity epitope binding assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/1532 + label: 'NTR: peripheral blood mononuclear cell specimen' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1533 + label: organizations duplicate definitions ROBOT report error +- id: https://api.github.com/repos/obi-ontology/obi/issues/1534 + label: added remote patient assessment +- id: https://api.github.com/repos/obi-ontology/obi/issues/1535 + label: error running make imports +- id: https://api.github.com/repos/obi-ontology/obi/issues/1536 + label: 'add term tracker items to "specimen" and "material sample" terms to link + to context provided in #1013' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1537 + label: 'sequencing assays #1457' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1538 + label: '''placental blood specimen'' & assoc. microbiology assay & data terms' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1539 + label: removes definitions from organizations +- id: https://api.github.com/repos/obi-ontology/obi/issues/154 + label: Include terms to allow query for Genepattern use case +- id: https://api.github.com/repos/obi-ontology/obi/issues/1540 + label: '''insecticide resistance by PCR-RELP assay'' detection technique correction' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1541 + label: Update ROBOT version, Ontofox HTTPS, base file IAO filter +- id: https://api.github.com/repos/obi-ontology/obi/issues/1542 + label: Require passing report on obi-base +- id: https://api.github.com/repos/obi-ontology/obi/issues/1543 + label: Rework base file generation +- id: https://api.github.com/repos/obi-ontology/obi/issues/1544 + label: Use labels for 'has curation status' instead of CURIEs/IRIs +- id: https://api.github.com/repos/obi-ontology/obi/issues/1545 + label: 'new term request for CFDE-GlyGen project : synaptosome preparation process' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1546 + label: 'NTRs: additional device terms needed for IGS gEAR project' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1547 + label: subtypes of electrophysiology assay should be classified under electrophysiology + assay +- id: https://api.github.com/repos/obi-ontology/obi/issues/1548 + label: adding 17 new assay terms for CFDE-4DN project +- id: https://api.github.com/repos/obi-ontology/obi/issues/1549 + label: 'XCL1 production terms ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/155 + label: ONTIE term migration +- id: https://api.github.com/repos/obi-ontology/obi/issues/1550 + label: target context column +- id: https://api.github.com/repos/obi-ontology/obi/issues/1551 + label: Add OBO Dashboard badges +- id: https://api.github.com/repos/obi-ontology/obi/issues/1552 + label: OBO badges to README.md +- id: https://api.github.com/repos/obi-ontology/obi/issues/1553 + label: Add three missing textual definitions +- id: https://api.github.com/repos/obi-ontology/obi/issues/1554 + label: '2nd attempt - target context column ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1555 + label: 'NTR: administration in vivo terms' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1556 + label: 'review of assays with detection techniques ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1557 + label: Fix DL violation for 'placental blood specimen' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1558 + label: Release Candidate 2022-06-14 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1559 + label: 'NTR: linked-read sequencing assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/156 + label: Raw Data vs Processed data +- id: https://api.github.com/repos/obi-ontology/obi/issues/1560 + label: Date of measurement +- id: https://api.github.com/repos/obi-ontology/obi/issues/1561 + label: immune epitope biological activity assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/1562 + label: administering substance in vivo terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1563 + label: 'NTRs: Freezer, Freezer handle' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1564 + label: add 'mid-upper arm circumference datum' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1565 + label: adding 19 new device terms for gEAR project +- id: https://api.github.com/repos/obi-ontology/obi/issues/1566 + label: Fix typo 'A induced sputum...' in three definitions +- id: https://api.github.com/repos/obi-ontology/obi/issues/1567 + label: Release Candidate 2022-07-11 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1568 + label: add PBMC & PBMC specimen +- id: https://api.github.com/repos/obi-ontology/obi/issues/1569 + label: Reformulation of 'ontology' document header tag +- id: https://api.github.com/repos/obi-ontology/obi/issues/157 + label: specified ... relations +- id: https://api.github.com/repos/obi-ontology/obi/issues/1570 + label: ANOVA should be a subclass of statistical hypothesis test to be consistent + with STATO +- id: https://api.github.com/repos/obi-ontology/obi/issues/1571 + label: antigen specific antibodies assay & data terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1572 + label: Add enzyme activity level assays for CEBS +- id: https://api.github.com/repos/obi-ontology/obi/issues/1573 + label: corrects "a information" to "an information" in definitions +- id: https://api.github.com/repos/obi-ontology/obi/issues/1574 + label: moved 'assay kit' to 'device' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1575 + label: topic for meeting discussion - handling of 'data format specification' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1576 + label: 'Annotation: hasDbXref option?' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1577 + label: 'NTR: data items - specimen storage' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1578 + label: 'NTR: data items - sampling location' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1579 + label: 'NTR: data items - gene detection output' +- id: https://api.github.com/repos/obi-ontology/obi/issues/158 + label: genotyping definition +- id: https://api.github.com/repos/obi-ontology/obi/issues/1580 + label: 'NTR: devices - brushes, vials, etc.' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1581 + label: 'NTR: devices - specimen container' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1582 + label: 'NTR: sample collection - type of sample' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1583 + label: 'NTR: virus transport medium' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1584 + label: 'NTR: swab, wet wipe, personal protective gown' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1585 + label: Requesting additional bath terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1586 + label: Is OBI is suitable home for specific clinical outcome assessments? +- id: https://api.github.com/repos/obi-ontology/obi/issues/1587 + label: FAIRE-seq assay +- id: https://api.github.com/repos/obi-ontology/obi/issues/1588 + label: 'Faire-seq assay ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1589 + label: add Mosquito Magnet Liberty Plus +- id: https://api.github.com/repos/obi-ontology/obi/issues/159 + label: _cloning placeholder +- id: https://api.github.com/repos/obi-ontology/obi/issues/1590 + label: "NTR: \u2018tumor challenge\u2019 and \u2018in vivo challenge\u2019" +- id: https://api.github.com/repos/obi-ontology/obi/issues/1591 + label: Ensure obi-base.owl is updated, fix whitespace error +- id: https://api.github.com/repos/obi-ontology/obi/issues/1592 + label: subtypes of electrophysiology assay +- id: https://api.github.com/repos/obi-ontology/obi/issues/1593 + label: OBI_00001975 has 8 characters in identifier +- id: https://api.github.com/repos/obi-ontology/obi/issues/1594 + label: 'NTR: epitope protection assays ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1595 + label: 'remove axiom: local field potential recording has-input that is located + *only* in brain' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1596 + label: Uberon import loses crucial linking information +- id: https://api.github.com/repos/obi-ontology/obi/issues/1597 + label: Refresh RO import +- id: https://api.github.com/repos/obi-ontology/obi/issues/1598 + label: '''organism identification assay'' definition change' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1599 + label: Null values for scalar value specifications +- id: https://api.github.com/repos/obi-ontology/obi/issues/16 + label: Write script to allocate ids to obi terms w/out them +- id: https://api.github.com/repos/obi-ontology/obi/issues/160 + label: 'typo in class label: extra cellular electrophysilogy recordi' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1600 + label: changes to biobank-specimens template +- id: https://api.github.com/repos/obi-ontology/obi/issues/1601 + label: 'NTR: epitope intervention challenge assays ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1602 + label: 'NTR: cow-baited arthropod trap' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1603 + label: 'NTR: Gram stain assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1604 + label: Added 'synaptosome preparation process' OBI:0003384 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1605 + label: Provide ORCID for editors in term request +- id: https://api.github.com/repos/obi-ontology/obi/issues/1606 + label: 'missing textual definitions ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1607 + label: 'NTRs: lymph specimen, digestive tract specimen ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1608 + label: OBI:0002781 and OBI:0002783 have the same EquivalentTo +- id: https://api.github.com/repos/obi-ontology/obi/issues/1609 + label: Remove annotation command from obi.obo generation +- id: https://api.github.com/repos/obi-ontology/obi/issues/161 + label: weight assessment +- id: https://api.github.com/repos/obi-ontology/obi/issues/1610 + label: Some OBI terms not getting displayed in tree view in OLS +- id: https://api.github.com/repos/obi-ontology/obi/issues/1611 + label: 'NTR: interleukin-25 production by T cells assays' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1612 + label: unsatisfiability from COB interaction +- id: https://api.github.com/repos/obi-ontology/obi/issues/1613 + label: in vivo immune-epitope bio activity assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/1614 + label: Design pattern for protocol terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1615 + label: Axioms for 'organism identification datum' and its children +- id: https://api.github.com/repos/obi-ontology/obi/issues/1616 + label: edit def. of organism id terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1617 + label: add 'Gram stain assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1618 + label: add 'cow-baited arthropod trap' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1619 + label: lymph specimen, digestive tract specimen +- id: https://api.github.com/repos/obi-ontology/obi/issues/162 + label: waiting - problematic +- id: https://api.github.com/repos/obi-ontology/obi/issues/1620 + label: 'NTR: T cell cytokine production bioassay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1621 + label: Format term-tracker-item annotations consistently +- id: https://api.github.com/repos/obi-ontology/obi/issues/1622 + label: IL-25 assays and Tcell bioassays +- id: https://api.github.com/repos/obi-ontology/obi/issues/1623 + label: fixes term-tracker format for OBI terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1624 + label: Clarification regarding identifier modeling pattern in OBI (and OBO) needed +- id: https://api.github.com/repos/obi-ontology/obi/issues/1625 + label: Changes to the 'material to be added role' term and its related terms. +- id: https://api.github.com/repos/obi-ontology/obi/issues/1626 + label: generality of class "device" +- id: https://api.github.com/repos/obi-ontology/obi/issues/1627 + label: Please roll back merged change to OBI:0001624 (keep definition in current + release) +- id: https://api.github.com/repos/obi-ontology/obi/issues/1628 + label: remove fluorescence imaging assays as children of fluorescence detection + assay +- id: https://api.github.com/repos/obi-ontology/obi/issues/1629 + label: 'NTR: control specimen role' +- id: https://api.github.com/repos/obi-ontology/obi/issues/163 + label: specified ... relations +- id: https://api.github.com/repos/obi-ontology/obi/issues/1630 + label: Revert "edit def. of organism id terms" +- id: https://api.github.com/repos/obi-ontology/obi/issues/1631 + label: Release Candidate 2022-11-14 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1632 + label: mistake in textual definition of microbiology data terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1633 + label: 'NTR: organism detection assay (more general than OBI:0001624)' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1634 + label: 'term update: genome coverage' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1635 + label: The sacrilege of contemplating the renaming of "assay" +- id: https://api.github.com/repos/obi-ontology/obi/issues/1636 + label: Release Candidate 2022-12-14 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1637 + label: 'NTR: COA Terms' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1638 + label: OBI is adding invalid subclass axioms to ChEBI +- id: https://api.github.com/repos/obi-ontology/obi/issues/1639 + label: obi-base.owl includes rdfs:labels for terms from other ontologies +- id: https://api.github.com/repos/obi-ontology/obi/issues/164 + label: Fix wiki links to obolibrary instead of obfoundry +- id: https://api.github.com/repos/obi-ontology/obi/issues/1640 + label: changes to organism detection terms in assay module +- id: https://api.github.com/repos/obi-ontology/obi/issues/1641 + label: Added FARS COA Terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1642 + label: has_specified_input axioms & analyte/measurand roles +- id: https://api.github.com/repos/obi-ontology/obi/issues/1643 + label: Issue 1456 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1644 + label: changes to "material to be added role" +- id: https://api.github.com/repos/obi-ontology/obi/issues/1645 + label: tandom mass spectrometry changes +- id: https://api.github.com/repos/obi-ontology/obi/issues/1646 + label: move 'ANOVA' under 'statistical hypothesis test' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1647 + label: remove universal restriction axiom in 'local field potential recording' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1648 + label: OBI_0200062 & OBI_0200064 have misleading labels +- id: https://api.github.com/repos/obi-ontology/obi/issues/1649 + label: improve term label of OBI_0200062 & OBI_0200064 +- id: https://api.github.com/repos/obi-ontology/obi/issues/165 + label: '''taking specimen from organism''' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1650 + label: Equivalent axiom for 'antigen specific antibodies in blood assay datum' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1651 + label: 'NTR: resting clay pot trap' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1652 + label: Adding new COA terms under Assay>physical examination of individual +- id: https://api.github.com/repos/obi-ontology/obi/issues/1653 + label: Assays.tsv template update request +- id: https://api.github.com/repos/obi-ontology/obi/issues/1654 + label: 'NTR: human odor baited light trap' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1655 + label: improve 'physical examination of individual' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1656 + label: Detection data term changes +- id: https://api.github.com/repos/obi-ontology/obi/issues/1657 + label: remove universal restriction in "local filed potential recording" +- id: https://api.github.com/repos/obi-ontology/obi/issues/1658 + label: add 'analysis' to OBI_0200062 & OBI_0200064 labels +- id: https://api.github.com/repos/obi-ontology/obi/issues/1659 + label: remove annotation whitespace +- id: https://api.github.com/repos/obi-ontology/obi/issues/166 + label: specimen creation +- id: https://api.github.com/repos/obi-ontology/obi/issues/1660 + label: biobank-specimens template update +- id: https://api.github.com/repos/obi-ontology/obi/issues/1661 + label: update fluorescence imaging assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/1662 + label: syringe, injection, and injection function +- id: https://api.github.com/repos/obi-ontology/obi/issues/1663 + label: Fail on equivalent named classes +- id: https://api.github.com/repos/obi-ontology/obi/issues/1664 + label: 'Update description of OBI. Fixes #964' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1665 + label: Possible to improve OBI_0002131? +- id: https://api.github.com/repos/obi-ontology/obi/issues/1666 + label: Refine definition for OBI:irradiation to include notion of necessarily being + a planned process +- id: https://api.github.com/repos/obi-ontology/obi/issues/1667 + label: Add annotations for new RBO:radiation class +- id: https://api.github.com/repos/obi-ontology/obi/issues/1668 + label: 'NTR: breath specimen, breath assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1669 + label: 'Fix #1639 bug with base file' +- id: https://api.github.com/repos/obi-ontology/obi/issues/167 + label: mass spectrometry/mass spec assay - duplication +- id: https://api.github.com/repos/obi-ontology/obi/issues/1670 + label: Release Candidate 2023-03-10 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1671 + label: Try ripping out non-OBI axioms and merging in COB +- id: https://api.github.com/repos/obi-ontology/obi/issues/1672 + label: Add release scripts +- id: https://api.github.com/repos/obi-ontology/obi/issues/1673 + label: Added terms for raw MRI acquisition and reconstruction to anatomical MRI +- id: https://api.github.com/repos/obi-ontology/obi/issues/1674 + label: tweak specimen collection device def +- id: https://api.github.com/repos/obi-ontology/obi/issues/1675 + label: Commit with protege 5.6.1 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1676 + label: Update ROBOT to 1.9.3 with OWLAPI 4.5.25 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1677 + label: '#1512' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1678 + label: update definition of 'waiting' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1679 + label: 'genome coverage defn simplification #1634' +- id: https://api.github.com/repos/obi-ontology/obi/issues/168 + label: grouping processes - assays vs process - granularity issue +- id: https://api.github.com/repos/obi-ontology/obi/issues/1680 + label: 'NTR: additional microbiology assay/datum terms' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1681 + label: Second round of `robot convert` with new OWLAPI +- id: https://api.github.com/repos/obi-ontology/obi/issues/1682 + label: update 'epitope' definition +- id: https://api.github.com/repos/obi-ontology/obi/issues/1683 + label: 'Proposed Revision of Assay Definition ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1684 + label: 'NTR: spectrometry analysis terms ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1685 + label: 'NTR: liquid chromatography' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1686 + label: limit of detection terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1687 + label: 'liquid chromatography terms ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1688 + label: 'revision of antigen and antigen role terms ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1689 + label: add 'odor baited CDC light trap' +- id: https://api.github.com/repos/obi-ontology/obi/issues/169 + label: acquisition +- id: https://api.github.com/repos/obi-ontology/obi/issues/1690 + label: embryonic or in ovo study design +- id: https://api.github.com/repos/obi-ontology/obi/issues/1691 + label: revise assay textual definition +- id: https://api.github.com/repos/obi-ontology/obi/issues/1692 + label: Some planned processes not defined in terms of 'planned process' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1693 + label: Can biological and technical replicates be used for environmental metagenome + samples? +- id: https://api.github.com/repos/obi-ontology/obi/issues/1694 + label: relabel donor to donor role +- id: https://api.github.com/repos/obi-ontology/obi/issues/1695 + label: revise range for is_manufactured_by +- id: https://api.github.com/repos/obi-ontology/obi/issues/1696 + label: README 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https://api.github.com/repos/obi-ontology/obi/issues/1703 + label: 'NTR: routes of administration' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1704 + label: New RO "measures characteristic" applied to assay and COB characteristic +- id: https://api.github.com/repos/obi-ontology/obi/issues/1705 + label: add new microbiology assay & data terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1706 + label: Template for 'administration of substance in vivo' terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/1707 + label: Flow cytometry 1007 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1708 + label: 'Suggestion of label change for OBI_0001909: conclusion based on data' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1709 + label: 'Discrepancy between definition and axiomatization for OBI_0000338: drawing + a conclusion based on data' +- id: https://api.github.com/repos/obi-ontology/obi/issues/171 + label: qualities without matching processes +- id: https://api.github.com/repos/obi-ontology/obi/issues/1710 + label: 'Suggestion of definition modification for OBI_0003366: organism diagnostic + process' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1711 + label: 'NTR : Illumina NextSeq 1000' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1712 + label: The money's data on the personalised process of it valuation in substitition + of investment to make capital gains +- id: https://api.github.com/repos/obi-ontology/obi/issues/1713 + label: Fix link to documentation +- id: https://api.github.com/repos/obi-ontology/obi/issues/1714 + label: Add past tense to definition of OBI:0003366 +- id: https://api.github.com/repos/obi-ontology/obi/issues/1715 + label: Improve OBI:0302889 'irradiation' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1716 + label: Fix rdfs:label for 'planned irradiation' +- id: https://api.github.com/repos/obi-ontology/obi/issues/1717 + label: Release 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label: Single-cell BCR/TCR assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/173 + label: synthesis +- id: https://api.github.com/repos/obi-ontology/obi/issues/174 + label: analyte assay - missing child terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/175 + label: sequencing/DNA sequencing +- id: https://api.github.com/repos/obi-ontology/obi/issues/176 + label: MIREOT of EFO terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/177 + label: generation of genetic mutations +- id: https://api.github.com/repos/obi-ontology/obi/issues/178 + label: realizes +- id: https://api.github.com/repos/obi-ontology/obi/issues/179 + label: Clean up in _bin role branch +- id: https://api.github.com/repos/obi-ontology/obi/issues/18 + label: Definition of 'hypothesis' needs work +- id: https://api.github.com/repos/obi-ontology/obi/issues/180 + label: Reduce DT Use Case to 2 paragraphs +- id: https://api.github.com/repos/obi-ontology/obi/issues/181 + label: 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+- id: https://api.github.com/repos/obi-ontology/obi/issues/771 + label: OBI_0001683 to relabel and add a general FISH class +- id: https://api.github.com/repos/obi-ontology/obi/issues/772 + label: New Term Request - TAB-seq +- id: https://api.github.com/repos/obi-ontology/obi/issues/773 + label: New Term Request - RACE +- id: https://api.github.com/repos/obi-ontology/obi/issues/774 + label: 'New Term Request - Human 6x630K CGH Whole Genome Tiling Array ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/775 + label: specimen container for biobanks - or for more general use? +- id: https://api.github.com/repos/obi-ontology/obi/issues/776 + label: OBIB term request for 'physical store' +- id: https://api.github.com/repos/obi-ontology/obi/issues/777 + label: 'New Term Requests: assays' +- id: https://api.github.com/repos/obi-ontology/obi/issues/778 + label: loosen analyte role to allow cells, virii? +- id: https://api.github.com/repos/obi-ontology/obi/issues/779 + label: '''study design'' and ''execution of study design''' +- id: https://api.github.com/repos/obi-ontology/obi/issues/78 + label: BirnLex SW ontology +- id: https://api.github.com/repos/obi-ontology/obi/issues/780 + label: 'clarifications sought for: genetic modification' +- id: https://api.github.com/repos/obi-ontology/obi/issues/781 + label: 'Term request: whole organ specimen' +- id: https://api.github.com/repos/obi-ontology/obi/issues/782 + label: New term request - eCLIP +- id: https://api.github.com/repos/obi-ontology/obi/issues/783 + label: New Terminologies for OBI (Yale Med School) +- id: https://api.github.com/repos/obi-ontology/obi/issues/784 + label: 'issue of OBI_1110095: ''blood harvesting''' +- id: https://api.github.com/repos/obi-ontology/obi/issues/785 + label: improve definition of "Non negative matrix factorization" +- id: https://api.github.com/repos/obi-ontology/obi/issues/786 + label: Use of 'gross anatomical part' to define 'tissue specimen' +- id: https://api.github.com/repos/obi-ontology/obi/issues/787 + label: More intuitive label for 'tissue specimen' +- id: https://api.github.com/repos/obi-ontology/obi/issues/788 + label: move 'organization' under 'object aggregate' +- id: https://api.github.com/repos/obi-ontology/obi/issues/789 + label: Replace CARO terms with UBERON terms in OBI +- id: https://api.github.com/repos/obi-ontology/obi/issues/79 + label: J Westbrook's hierarchy +- id: https://api.github.com/repos/obi-ontology/obi/issues/790 + label: Add 'geometric mean calculation' +- id: https://api.github.com/repos/obi-ontology/obi/issues/791 + label: assay harmonization - inputs of assay +- id: https://api.github.com/repos/obi-ontology/obi/issues/792 + label: assay harmonization - device +- id: https://api.github.com/repos/obi-ontology/obi/issues/793 + label: assay harmonization - outputs of assay +- id: https://api.github.com/repos/obi-ontology/obi/issues/794 + label: assay harmonization - objective +- id: https://api.github.com/repos/obi-ontology/obi/issues/795 + label: assay harmonization - processes in assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/796 + label: NTR - Bru-seq & BruChase-seq +- id: https://api.github.com/repos/obi-ontology/obi/issues/797 + label: NTR - small RNA-seq +- id: https://api.github.com/repos/obi-ontology/obi/issues/798 + label: 'Specified input issue for chromosome organization assay by FISH ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/799 + label: Analytes and outputs of multi-part assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/8 + label: Variables indicated by relations or as entities +- id: https://api.github.com/repos/obi-ontology/obi/issues/80 + label: Cartik annotations +- id: https://api.github.com/repos/obi-ontology/obi/issues/800 + label: regarding value specifications +- id: https://api.github.com/repos/obi-ontology/obi/issues/801 + label: 'Class request: digital object identifier' +- id: https://api.github.com/repos/obi-ontology/obi/issues/802 + label: reagrading PubMed ID +- id: https://api.github.com/repos/obi-ontology/obi/issues/803 + label: 'NTR: terms related to RNA seq data analysis' +- id: https://api.github.com/repos/obi-ontology/obi/issues/804 + label: remove hyphen from in-situ hybridization +- id: https://api.github.com/repos/obi-ontology/obi/issues/805 + label: prostate gland imported as both class and instance +- id: https://api.github.com/repos/obi-ontology/obi/issues/806 + label: NTRs (requested by project ENCODE) +- id: https://api.github.com/repos/obi-ontology/obi/issues/807 + label: 'New Term Request: Pulse SILAC' +- id: https://api.github.com/repos/obi-ontology/obi/issues/808 + label: Classify enzymes +- id: https://api.github.com/repos/obi-ontology/obi/issues/809 + label: 'NTR: stained fixed slide specimens' +- id: https://api.github.com/repos/obi-ontology/obi/issues/81 + label: Measurement Proposal +- id: https://api.github.com/repos/obi-ontology/obi/issues/810 + label: empty/null value for a property in OBI +- id: https://api.github.com/repos/obi-ontology/obi/issues/811 + label: handle single cell specimen +- id: https://api.github.com/repos/obi-ontology/obi/issues/812 + label: add new class to represent clinical assessments (handedness, tumor grading) +- id: https://api.github.com/repos/obi-ontology/obi/issues/813 + label: NTRs for ECO-OBI collaboration +- id: https://api.github.com/repos/obi-ontology/obi/issues/814 + label: remove extra 'textual definition' label +- id: https://api.github.com/repos/obi-ontology/obi/issues/815 + label: Check reasoning speed and compare +- id: https://api.github.com/repos/obi-ontology/obi/issues/816 + label: Add two new epitope assays +- id: https://api.github.com/repos/obi-ontology/obi/issues/817 + label: cloud condensation nucleus counter +- id: https://api.github.com/repos/obi-ontology/obi/issues/818 + label: 'Extensions for Value Specifications ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/819 + label: Generalize range of 'has specified value' +- id: https://api.github.com/repos/obi-ontology/obi/issues/82 + label: Feature class and has_feature relation +- id: https://api.github.com/repos/obi-ontology/obi/issues/820 + label: NTR:mobility size spectrometer +- id: https://api.github.com/repos/obi-ontology/obi/issues/821 + label: please add class "case series study design" +- id: https://api.github.com/repos/obi-ontology/obi/issues/822 + label: 'NTR: database extract, transform, and load process' +- id: https://api.github.com/repos/obi-ontology/obi/issues/823 + label: 'NTR: degree Fahrenheit import' +- id: https://api.github.com/repos/obi-ontology/obi/issues/824 + label: 'NTR: RNA integrity number' +- id: https://api.github.com/repos/obi-ontology/obi/issues/825 + label: 'NTR: Detection of antigen specific antibodies assays and related serologic + tests' +- id: https://api.github.com/repos/obi-ontology/obi/issues/826 + label: Three PATO obsolete terms need to be replaced +- id: https://api.github.com/repos/obi-ontology/obi/issues/827 + label: 'NTR: BruUV-seq' +- id: https://api.github.com/repos/obi-ontology/obi/issues/828 + label: 'NTR: Genotyping by HiC' +- id: https://api.github.com/repos/obi-ontology/obi/issues/829 + label: 'NTR: Mint-ChIP' +- id: https://api.github.com/repos/obi-ontology/obi/issues/83 + label: reference protocol +- id: https://api.github.com/repos/obi-ontology/obi/issues/830 + label: 'NTR: Circulome-seq' +- id: https://api.github.com/repos/obi-ontology/obi/issues/831 + label: 'NTR: nCounter Mouse miRNA Expression arrays' +- id: https://api.github.com/repos/obi-ontology/obi/issues/832 + label: 'NTR: Illumina Genome Analyzer (general/parent term)' +- id: https://api.github.com/repos/obi-ontology/obi/issues/833 + label: What is the difference between a value specification and a measurement datum + ? +- id: https://api.github.com/repos/obi-ontology/obi/issues/834 + label: 'NTR: quality measurement assays and associated value specifications' +- id: https://api.github.com/repos/obi-ontology/obi/issues/835 + label: 'NTR: more specimen from organism terms needed for OBIB/NCI BBRB' +- id: https://api.github.com/repos/obi-ontology/obi/issues/836 + label: Definition of 'training objective' has a grammatical error and incorrect + genus +- id: https://api.github.com/repos/obi-ontology/obi/issues/837 + label: '''inclusion criteria'' is plural' +- id: https://api.github.com/repos/obi-ontology/obi/issues/838 + label: check logical definition of investigation agent role +- id: https://api.github.com/repos/obi-ontology/obi/issues/839 + label: 'Term request: Age group inclusion criterion' +- id: https://api.github.com/repos/obi-ontology/obi/issues/84 + label: Experimental factor +- id: https://api.github.com/repos/obi-ontology/obi/issues/840 + label: 'Term request: Use of medication inclusion criterion' +- id: https://api.github.com/repos/obi-ontology/obi/issues/841 + label: 'Term request: Hospital patient inclusion criterion' +- id: https://api.github.com/repos/obi-ontology/obi/issues/842 + label: 'Term request: family status inclusion criterion' +- id: https://api.github.com/repos/obi-ontology/obi/issues/843 + label: 'Term request: Sex inclusion criterion' +- id: https://api.github.com/repos/obi-ontology/obi/issues/844 + label: 'Term request: Country of residence inclusion criterion' +- id: https://api.github.com/repos/obi-ontology/obi/issues/845 + label: 'Term request: Ethnicity inclusion criterion' +- id: https://api.github.com/repos/obi-ontology/obi/issues/846 + label: intracellular + extracellular electrophysiological recording terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/847 + label: 'NTR: oligo-dT primed Total RNA' +- id: https://api.github.com/repos/obi-ontology/obi/issues/848 + label: 'NTR: cDNA Sequencing Assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/849 + label: 'NTR: PacBio Sequel Sequencing Platform' +- id: https://api.github.com/repos/obi-ontology/obi/issues/85 + label: protocol application role +- id: https://api.github.com/repos/obi-ontology/obi/issues/850 + label: 'NTR: 10X Chromium Library Construction Platform' +- id: https://api.github.com/repos/obi-ontology/obi/issues/851 + label: 'NTR: C1 Fluidigm Library Construction Platform' +- id: https://api.github.com/repos/obi-ontology/obi/issues/852 + label: 'NTR: icSHAPE Assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/853 + label: histology and Histopathology +- id: https://api.github.com/repos/obi-ontology/obi/issues/854 + label: Distinguish definitions for "proteomic profiling design" and "proteomic profiling + by array design" +- id: https://api.github.com/repos/obi-ontology/obi/issues/855 + label: 'NTR: specimen processing and transport terms needed for OBIB/NCI BBRB' +- id: https://api.github.com/repos/obi-ontology/obi/issues/856 + label: 'NTR: AJCC tumor grade value specification' +- id: https://api.github.com/repos/obi-ontology/obi/issues/857 + label: Update OBI build system +- id: https://api.github.com/repos/obi-ontology/obi/issues/858 + label: What to do with OBI:00001975? +- id: https://api.github.com/repos/obi-ontology/obi/issues/859 + label: Update OBI:0002112 +- id: https://api.github.com/repos/obi-ontology/obi/issues/86 + label: Reference value +- id: https://api.github.com/repos/obi-ontology/obi/issues/860 + label: Add first batch of assays from ECO +- id: https://api.github.com/repos/obi-ontology/obi/issues/861 + label: Add new release candidate 2017-09-03 +- id: https://api.github.com/repos/obi-ontology/obi/issues/862 + label: ordinal value specification +- id: https://api.github.com/repos/obi-ontology/obi/issues/863 + label: polyA+ & polyA- RNA-seq distinctions +- id: https://api.github.com/repos/obi-ontology/obi/issues/864 + label: 'NTRs: ATAC-seq assays' +- id: https://api.github.com/repos/obi-ontology/obi/issues/865 + label: Eligibility criteria for consideration into OBI +- id: https://api.github.com/repos/obi-ontology/obi/issues/866 + label: 'NTR: medical history related terms' +- id: https://api.github.com/repos/obi-ontology/obi/issues/867 + label: 'NTR: molecular analysis facility' +- id: https://api.github.com/repos/obi-ontology/obi/issues/868 + label: Value Specification as datatype +- id: https://api.github.com/repos/obi-ontology/obi/issues/869 + label: 'Add validation rule: synonyms should not duplicate primary label' +- id: https://api.github.com/repos/obi-ontology/obi/issues/87 + label: TheRest.owl +- id: https://api.github.com/repos/obi-ontology/obi/issues/870 + label: Measurement Datum vs. Value Specification +- id: https://api.github.com/repos/obi-ontology/obi/issues/871 + label: 'NTR: New terms for the Ontology for RNA Sequencing (ORNASEQ)' +- id: https://api.github.com/repos/obi-ontology/obi/issues/872 + label: circulome-seq term +- id: https://api.github.com/repos/obi-ontology/obi/issues/873 + label: Improve logic for DNA sequencing service +- id: https://api.github.com/repos/obi-ontology/obi/issues/874 + label: 'NTR: direct RNA sequencing assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/875 + label: 'NTR: Chromosome conformation capture-on-chip' +- id: https://api.github.com/repos/obi-ontology/obi/issues/876 + label: 'NTR: Precision nuclear run-on and sequencing assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/877 + label: 'NTR: Clone-seq' +- id: https://api.github.com/repos/obi-ontology/obi/issues/878 + label: 'NTR: isoform sequencing' +- id: https://api.github.com/repos/obi-ontology/obi/issues/879 + label: 'Adding Subtypes for ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/88 + label: radioactive and dispositions +- id: https://api.github.com/repos/obi-ontology/obi/issues/880 + label: 'term request: health status inclusion criterion' +- id: https://api.github.com/repos/obi-ontology/obi/issues/881 + label: 'term request: clinically relevant life style inclusion criterion' +- id: https://api.github.com/repos/obi-ontology/obi/issues/882 + label: 'performing a clinical assessment ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/883 + label: '''derives from'' in definitions of specimens' +- id: https://api.github.com/repos/obi-ontology/obi/issues/884 + label: Add 4 new terms for ECO +- id: https://api.github.com/repos/obi-ontology/obi/issues/885 + label: Adjust definition of 'hydroxyl-radical footprinting assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/886 + label: Add two assays, update a couple more +- id: https://api.github.com/repos/obi-ontology/obi/issues/887 + label: 'Term request: clinically relevant exposure inclusion criterion' +- id: https://api.github.com/repos/obi-ontology/obi/issues/888 + label: 'term request: gravidity inclusion criterion' +- id: https://api.github.com/repos/obi-ontology/obi/issues/889 + label: hasDateTime +- id: https://api.github.com/repos/obi-ontology/obi/issues/89 + label: gating +- id: https://api.github.com/repos/obi-ontology/obi/issues/890 + label: Roles as substitutes for object/datatype properties +- id: https://api.github.com/repos/obi-ontology/obi/issues/891 + label: Where is the obo file +- id: https://api.github.com/repos/obi-ontology/obi/issues/892 + label: Fix missing link to git website +- id: https://api.github.com/repos/obi-ontology/obi/issues/893 + label: Fix indented code blocks +- id: https://api.github.com/repos/obi-ontology/obi/issues/894 + label: Fix one more indented code block +- id: https://api.github.com/repos/obi-ontology/obi/issues/895 + label: 'Fix title: add ''s''' +- id: https://api.github.com/repos/obi-ontology/obi/issues/896 + label: 'NTR: case eligibility criterion' +- id: https://api.github.com/repos/obi-ontology/obi/issues/897 + label: 'NTR: stool specimen collection process' +- id: https://api.github.com/repos/obi-ontology/obi/issues/898 + label: 'NTR: has start time' +- id: https://api.github.com/repos/obi-ontology/obi/issues/899 + label: 'NTR: has end time' +- id: https://api.github.com/repos/obi-ontology/obi/issues/9 + label: Should any assay term names include the string "analysis" +- id: https://api.github.com/repos/obi-ontology/obi/issues/90 + label: Visualization Terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/900 + label: 'NTR: water container' +- id: https://api.github.com/repos/obi-ontology/obi/issues/901 + label: 'NTR: pouring' +- id: https://api.github.com/repos/obi-ontology/obi/issues/902 + label: 'NTR: scooping' +- id: https://api.github.com/repos/obi-ontology/obi/issues/903 + label: 'NTR: water treatment' +- id: https://api.github.com/repos/obi-ontology/obi/issues/904 + label: 'NTR: chlorine testing' +- id: https://api.github.com/repos/obi-ontology/obi/issues/905 + label: 'NTR: control eligibility check' +- id: https://api.github.com/repos/obi-ontology/obi/issues/906 + label: 'NTR: specimen transportation' +- id: https://api.github.com/repos/obi-ontology/obi/issues/907 + label: 'NTR: skin pinch test' +- id: https://api.github.com/repos/obi-ontology/obi/issues/908 + label: 'NTR: skin return process' +- id: https://api.github.com/repos/obi-ontology/obi/issues/909 + label: 'NTR: stool examination' +- id: https://api.github.com/repos/obi-ontology/obi/issues/91 + label: cell culturing +- id: https://api.github.com/repos/obi-ontology/obi/issues/910 + label: swab specimens +- id: https://api.github.com/repos/obi-ontology/obi/issues/911 + label: 'NTR: assay attempt' +- id: https://api.github.com/repos/obi-ontology/obi/issues/912 + label: Add editing instructions +- id: https://api.github.com/repos/obi-ontology/obi/issues/913 + label: testing with test obsolete +- id: https://api.github.com/repos/obi-ontology/obi/issues/914 + label: "changed derives from for human specimen set to derives from part of. \u2026" +- id: https://api.github.com/repos/obi-ontology/obi/issues/915 + label: Merge midlevel-assays into assays template +- id: https://api.github.com/repos/obi-ontology/obi/issues/916 + label: Describe templates in README +- id: https://api.github.com/repos/obi-ontology/obi/issues/917 + label: process is BFO_0000007 or BFO_0000015 ? +- id: https://api.github.com/repos/obi-ontology/obi/issues/918 + label: 'Add new terms for jahilton (#828, #875, #876)' +- id: https://api.github.com/repos/obi-ontology/obi/issues/919 + label: We have been using the wrong dublin core URI to indicate license all this + time +- id: https://api.github.com/repos/obi-ontology/obi/issues/92 + label: cell synchronization +- id: https://api.github.com/repos/obi-ontology/obi/issues/920 + label: 'Term request: defined population inclusion criteria' +- id: https://api.github.com/repos/obi-ontology/obi/issues/921 + label: 'GO: molecular_function is imported under BFO:function' +- id: https://api.github.com/repos/obi-ontology/obi/issues/922 + label: 'issues discussed 20180230 #919 #859 #831' +- id: https://api.github.com/repos/obi-ontology/obi/issues/923 + label: ' # 863' +- id: https://api.github.com/repos/obi-ontology/obi/issues/924 + label: amend patch clamp terms for Brenda Farrell +- id: https://api.github.com/repos/obi-ontology/obi/issues/925 + label: add new term 'patch-clamp voltage clamp assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/926 + label: term request 'whole-cell patch-clamp voltage clamp assay' +- id: https://api.github.com/repos/obi-ontology/obi/issues/927 + label: term request 'digital acquisition card' +- id: https://api.github.com/repos/obi-ontology/obi/issues/928 + label: term request 'pipette pressure clamp' +- id: https://api.github.com/repos/obi-ontology/obi/issues/929 + label: Move 'planned process' to a more general ontology, and simplify definition +- id: https://api.github.com/repos/obi-ontology/obi/issues/93 + label: Tree +- id: https://api.github.com/repos/obi-ontology/obi/issues/930 + label: remove paired- or single-ended binary choice from SOLiD and Solexa sequencing assays? +- id: https://api.github.com/repos/obi-ontology/obi/issues/931 + label: Equivalence axiom for gene knockdown assay is too inclusive +- id: https://api.github.com/repos/obi-ontology/obi/issues/932 + label: 'defined population inclusion criterion #920' +- id: https://api.github.com/repos/obi-ontology/obi/issues/933 + label: 'demoted gene knockdown assay equivalence axiom to subClassOf #931' +- id: https://api.github.com/repos/obi-ontology/obi/issues/934 + label: 'New terms for the Ontology for RNA Sequencing ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/935 + label: Replace obsolete GO 'protein complex' with 'protein-containing complex'? +- id: https://api.github.com/repos/obi-ontology/obi/issues/936 + label: 'Move GO:molecular_function under ''process'', fixes #921' +- id: https://api.github.com/repos/obi-ontology/obi/issues/937 + label: Add new release candidate 2018-05-23 +- id: https://api.github.com/repos/obi-ontology/obi/issues/938 + label: Correct cDNA Library concept +- id: https://api.github.com/repos/obi-ontology/obi/issues/939 + label: 'NTRs: nuclear ligation assay children' +- id: https://api.github.com/repos/obi-ontology/obi/issues/94 + label: dendrogram +- id: https://api.github.com/repos/obi-ontology/obi/issues/940 + label: Error loading modules in OBI using TBC +- id: https://api.github.com/repos/obi-ontology/obi/issues/941 + label: 'NTR: convolved/deconvolved sequence data and ?term label mismatches' +- id: https://api.github.com/repos/obi-ontology/obi/issues/942 + label: Correct definition, alt terms for OBI_0000650 differential expression analysis + data transformation +- id: https://api.github.com/repos/obi-ontology/obi/issues/943 + label: Move all assays to module +- id: https://api.github.com/repos/obi-ontology/obi/issues/944 + label: New terms for sequence analysis +- id: https://api.github.com/repos/obi-ontology/obi/issues/945 + label: 'Either change ''Measurement Datum'' to ''Datum'' or add new ''Datum'' class ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/946 + label: Material Processing > Epitope Tagging +- id: https://api.github.com/repos/obi-ontology/obi/issues/947 + label: Sequence analysis +- id: https://api.github.com/repos/obi-ontology/obi/issues/948 + label: 'NTR: machine learning technique' +- id: https://api.github.com/repos/obi-ontology/obi/issues/949 + label: 'DAQ card, issue #927' +- id: https://api.github.com/repos/obi-ontology/obi/issues/95 + label: time series +- id: https://api.github.com/repos/obi-ontology/obi/issues/950 + label: 'NTR: transcriptome assembly' +- id: https://api.github.com/repos/obi-ontology/obi/issues/951 + label: Try ROBOT `report` on OBI +- id: https://api.github.com/repos/obi-ontology/obi/issues/952 + label: Review 'assay antigen role' +- id: https://api.github.com/repos/obi-ontology/obi/issues/953 + label: Extension of OBI ontology with the term metabolite fingerprinting +- id: https://api.github.com/repos/obi-ontology/obi/issues/954 + label: 'machine learning inc. supervised and unsupervised #948' +- id: https://api.github.com/repos/obi-ontology/obi/issues/955 + label: Remove spurious underscores +- id: https://api.github.com/repos/obi-ontology/obi/issues/956 + label: Add new study designs +- id: https://api.github.com/repos/obi-ontology/obi/issues/957 + label: Add new release candidate 2018-08-27 +- id: https://api.github.com/repos/obi-ontology/obi/issues/958 + label: Run ELK reasoner for Travis checks +- id: https://api.github.com/repos/obi-ontology/obi/issues/959 + label: Add reasoning to test +- id: https://api.github.com/repos/obi-ontology/obi/issues/96 + label: cross-sectional data +- id: https://api.github.com/repos/obi-ontology/obi/issues/960 + label: broken see also link +- id: https://api.github.com/repos/obi-ontology/obi/issues/961 + label: RDF-centric checks on https://raw.githubusercontent.com/obi-ontology/obi/rc-2018-08-27/obi.owl +- id: https://api.github.com/repos/obi-ontology/obi/issues/962 + label: 'NTR: citizen science design' +- id: https://api.github.com/repos/obi-ontology/obi/issues/963 + label: OBI asserts a GO:molecular function to be a subclass of GO:biological process +- id: https://api.github.com/repos/obi-ontology/obi/issues/964 + label: update description annotation +- id: https://api.github.com/repos/obi-ontology/obi/issues/965 + label: 'NTR: second-harmonic imaging microscopy' +- id: https://api.github.com/repos/obi-ontology/obi/issues/966 + label: 'Add new classes for #939' +- id: https://api.github.com/repos/obi-ontology/obi/issues/967 + label: Fixes Issues 941 and 942 +- id: https://api.github.com/repos/obi-ontology/obi/issues/968 + label: Matching categorical measurement data and specifications +- id: https://api.github.com/repos/obi-ontology/obi/issues/969 + label: Sort out sampling process in relation to STATO_statistical sampling +- id: https://api.github.com/repos/obi-ontology/obi/issues/97 + label: purification comments by Chris Taylor +- id: https://api.github.com/repos/obi-ontology/obi/issues/970 + label: Specimen collection processes with subprocesses +- id: https://api.github.com/repos/obi-ontology/obi/issues/971 + label: 'NTR: longitudinal study design' +- id: https://api.github.com/repos/obi-ontology/obi/issues/972 + label: Wiki Guidelines +- id: https://api.github.com/repos/obi-ontology/obi/issues/973 + label: Obsolete PATO terms in OBI +- id: https://api.github.com/repos/obi-ontology/obi/issues/974 + label: need a place for images belonging to wiki articles +- id: https://api.github.com/repos/obi-ontology/obi/issues/975 + label: Curation status in assays.tsv should use labels +- id: https://api.github.com/repos/obi-ontology/obi/issues/976 + label: Better assay browsing +- id: https://api.github.com/repos/obi-ontology/obi/issues/977 + label: Improve assay hierarchy +- id: https://api.github.com/repos/obi-ontology/obi/issues/978 + label: Rename 'ID' column to 'Ontology ID' in all templates +- id: https://api.github.com/repos/obi-ontology/obi/issues/979 + label: 'added obo:OMIABIS_0001019 to onfofox template for issue #971' +- id: https://api.github.com/repos/obi-ontology/obi/issues/98 + label: biomaterial review - external terms +- id: https://api.github.com/repos/obi-ontology/obi/issues/980 + label: Change 'ID' to 'Ontology ID' in templates +- id: https://api.github.com/repos/obi-ontology/obi/issues/981 + label: time stamped measurement datum +- id: https://api.github.com/repos/obi-ontology/obi/issues/982 + label: What's the Range of 'specifies value of' +- id: https://api.github.com/repos/obi-ontology/obi/issues/983 + label: Why does OBI use owl:real as the Range for 'has specified numeric value'? +- id: https://api.github.com/repos/obi-ontology/obi/issues/984 + label: Which xsd types and triple patterns to use for dates of birth? +- id: https://api.github.com/repos/obi-ontology/obi/issues/985 + label: Are string data values part of the value specification framework? +- id: https://api.github.com/repos/obi-ontology/obi/issues/986 + label: 'chemical solution needs different ancestors in OBI ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/987 + label: '''some'' vs ''only'' restrictions' +- id: https://api.github.com/repos/obi-ontology/obi/issues/988 + label: 'IAO: Directive Information Entity' +- id: https://api.github.com/repos/obi-ontology/obi/issues/989 + label: categorical measurement datum referring to existing qualities +- id: https://api.github.com/repos/obi-ontology/obi/issues/99 + label: photo +- id: https://api.github.com/repos/obi-ontology/obi/issues/990 + label: 'NTR: microbiome sequencing design' +- id: https://api.github.com/repos/obi-ontology/obi/issues/991 + label: Request to add terms to study design +- id: https://api.github.com/repos/obi-ontology/obi/issues/992 + label: Fix xml:base and external-byhand.owl IRI +- id: https://api.github.com/repos/obi-ontology/obi/issues/993 + label: OBI and OMRSE both have patient roles +- id: https://api.github.com/repos/obi-ontology/obi/issues/994 + label: Organism and BFO:Object v. BFO:Material Entity +- id: https://api.github.com/repos/obi-ontology/obi/issues/995 + label: 'single cell RNA sequencing assay ' +- id: https://api.github.com/repos/obi-ontology/obi/issues/996 + label: 'created OBI_9000001 "has literal representation" in response to issue #985' +- id: https://api.github.com/repos/obi-ontology/obi/issues/997 + label: 'NTR: enrichment culture medium' +- id: https://api.github.com/repos/obi-ontology/obi/issues/998 + label: 'added swab specimen and process as per issue #910' +- id: https://api.github.com/repos/obi-ontology/obi/issues/999 + label: Remove rogue ROBOT, see robot#385 +embeddings: null