| { |
| "schema_version": "cellworldmodel.phase0.split_manifest.v1", |
| "created_at": "2026-04-03T14:21:30.591787+00:00", |
| "data_root": "data/processed/genhui_all/unified_h5ad_moscot_growth_rate", |
| "n_cells": 2477217, |
| "protocols": { |
| "A": { |
| "folds": [ |
| { |
| "fold_id": "A::dev_GSE275562", |
| "protocol": "A", |
| "dataset_key": "GSE275562", |
| "test_timepoint": 16.5, |
| "val_timepoint": 15.5, |
| "n_train": 9029, |
| "n_val": 10333, |
| "n_test": 3242, |
| "partition_file": "fold_partitions/A__dev_GSE275562.npz" |
| } |
| ] |
| }, |
| "B": { |
| "folds": [ |
| { |
| "fold_id": "B::E-MTAB-6967::test_t6p75", |
| "protocol": "B", |
| "series_scope": "E-MTAB-6967", |
| "dataset_keys": [ |
| "E-MTAB-6967" |
| ], |
| "test_timepoint": 6.75, |
| "val_timepoint": 7.25, |
| "n_train": 112543, |
| "n_val": 15294, |
| "n_test": 2169, |
| "s2t_test_pairs": 221529, |
| "s2t_val_pairs": 3741277, |
| "partition_file": "fold_partitions/B__E-MTAB-6967__test_t6p75.npz" |
| }, |
| { |
| "fold_id": "B::E-MTAB-6967::test_t7p25", |
| "protocol": "B", |
| "series_scope": "E-MTAB-6967", |
| "dataset_keys": [ |
| "E-MTAB-6967" |
| ], |
| "test_timepoint": 7.25, |
| "val_timepoint": 8.25, |
| "n_train": 96070, |
| "n_val": 18642, |
| "n_test": 15294, |
| "s2t_test_pairs": 3741277, |
| "s2t_val_pairs": 2807311, |
| "partition_file": "fold_partitions/B__E-MTAB-6967__test_t7p25.npz" |
| }, |
| { |
| "fold_id": "B::E-MTAB-6967::test_t7p50", |
| "protocol": "B", |
| "series_scope": "E-MTAB-6967", |
| "dataset_keys": [ |
| "E-MTAB-6967" |
| ], |
| "test_timepoint": 7.5, |
| "val_timepoint": 8.25, |
| "n_train": 98488, |
| "n_val": 18642, |
| "n_test": 12876, |
| "s2t_test_pairs": 2828294, |
| "s2t_val_pairs": 2807311, |
| "partition_file": "fold_partitions/B__E-MTAB-6967__test_t7p50.npz" |
| }, |
| { |
| "fold_id": "B::E-MTAB-6967::test_t8p25", |
| "protocol": "B", |
| "series_scope": "E-MTAB-6967", |
| "dataset_keys": [ |
| "E-MTAB-6967" |
| ], |
| "test_timepoint": 8.25, |
| "val_timepoint": 7.25, |
| "n_train": 96070, |
| "n_val": 15294, |
| "n_test": 18642, |
| "s2t_test_pairs": 2807311, |
| "s2t_val_pairs": 3741277, |
| "partition_file": "fold_partitions/B__E-MTAB-6967__test_t8p25.npz" |
| }, |
| { |
| "fold_id": "B::GSE106340::test_t8p00", |
| "protocol": "B", |
| "series_scope": "GSE106340", |
| "dataset_keys": [ |
| "GSE106340" |
| ], |
| "test_timepoint": 8.0, |
| "val_timepoint": 16.0, |
| "n_train": 53989, |
| "n_val": 8496, |
| "n_test": 5854, |
| "s2t_test_pairs": 145383, |
| "s2t_val_pairs": 2493181, |
| "partition_file": "fold_partitions/B__GSE106340__test_t8p00.npz" |
| }, |
| { |
| "fold_id": "B::GSE106340::test_t9p00", |
| "protocol": "B", |
| "series_scope": "GSE106340", |
| "dataset_keys": [ |
| "GSE106340" |
| ], |
| "test_timepoint": 9.0, |
| "val_timepoint": 16.0, |
| "n_train": 55215, |
| "n_val": 8496, |
| "n_test": 4628, |
| "s2t_test_pairs": 352902, |
| "s2t_val_pairs": 2493181, |
| "partition_file": "fold_partitions/B__GSE106340__test_t9p00.npz" |
| }, |
| { |
| "fold_id": "B::GSE106340::test_t11p00", |
| "protocol": "B", |
| "series_scope": "GSE106340", |
| "dataset_keys": [ |
| "GSE106340" |
| ], |
| "test_timepoint": 11.0, |
| "val_timepoint": 16.0, |
| "n_train": 58311, |
| "n_val": 8496, |
| "n_test": 1532, |
| "s2t_test_pairs": 114680, |
| "s2t_val_pairs": 2493181, |
| "partition_file": "fold_partitions/B__GSE106340__test_t11p00.npz" |
| }, |
| { |
| "fold_id": "B::GSE106340::test_t16p00", |
| "protocol": "B", |
| "series_scope": "GSE106340", |
| "dataset_keys": [ |
| "GSE106340" |
| ], |
| "test_timepoint": 16.0, |
| "val_timepoint": 9.0, |
| "n_train": 55215, |
| "n_val": 4628, |
| "n_test": 8496, |
| "s2t_test_pairs": 2493181, |
| "s2t_val_pairs": 352902, |
| "partition_file": "fold_partitions/B__GSE106340__test_t16p00.npz" |
| }, |
| { |
| "fold_id": "B::GSE106340::test_t17p00", |
| "protocol": "B", |
| "series_scope": "GSE106340", |
| "dataset_keys": [ |
| "GSE106340" |
| ], |
| "test_timepoint": 17.0, |
| "val_timepoint": 9.0, |
| "n_train": 57670, |
| "n_val": 4628, |
| "n_test": 6041, |
| "s2t_test_pairs": 843167, |
| "s2t_val_pairs": 352902, |
| "partition_file": "fold_partitions/B__GSE106340__test_t17p00.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t0p50", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 0.5, |
| "val_timepoint": 2.5, |
| "n_train": 170823, |
| "n_val": 6916, |
| "n_test": 3449, |
| "s2t_test_pairs": 49653, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t0p50.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t1p50", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 1.5, |
| "val_timepoint": 2.5, |
| "n_train": 172316, |
| "n_val": 6916, |
| "n_test": 1956, |
| "s2t_test_pairs": 19721, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t1p50.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t2p50", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 2.5, |
| "val_timepoint": 6.5, |
| "n_train": 171161, |
| "n_val": 3111, |
| "n_test": 6916, |
| "s2t_test_pairs": 265828, |
| "s2t_val_pairs": 157881, |
| "partition_file": "fold_partitions/B__GSE115943__test_t2p50.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t3p00", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 3.0, |
| "val_timepoint": 6.5, |
| "n_train": 171256, |
| "n_val": 3111, |
| "n_test": 6821, |
| "s2t_test_pairs": 50353, |
| "s2t_val_pairs": 157881, |
| "partition_file": "fold_partitions/B__GSE115943__test_t3p00.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t4p00", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 4.0, |
| "val_timepoint": 2.5, |
| "n_train": 165310, |
| "n_val": 6916, |
| "n_test": 8962, |
| "s2t_test_pairs": 50285, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t4p00.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t4p50", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 4.5, |
| "val_timepoint": 2.5, |
| "n_train": 167145, |
| "n_val": 6916, |
| "n_test": 7127, |
| "s2t_test_pairs": 103425, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t4p50.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t5p00", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 5.0, |
| "val_timepoint": 2.5, |
| "n_train": 167045, |
| "n_val": 6916, |
| "n_test": 7227, |
| "s2t_test_pairs": 38170, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t5p00.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t5p50", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 5.5, |
| "val_timepoint": 2.5, |
| "n_train": 167722, |
| "n_val": 6916, |
| "n_test": 6550, |
| "s2t_test_pairs": 42562, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t5p50.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t6p00", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 6.0, |
| "val_timepoint": 2.5, |
| "n_train": 165850, |
| "n_val": 6916, |
| "n_test": 8422, |
| "s2t_test_pairs": 74978, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t6p00.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t6p50", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 6.5, |
| "val_timepoint": 2.5, |
| "n_train": 171161, |
| "n_val": 6916, |
| "n_test": 3111, |
| "s2t_test_pairs": 157881, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t6p50.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t7p50", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 7.5, |
| "val_timepoint": 2.5, |
| "n_train": 169211, |
| "n_val": 6916, |
| "n_test": 5061, |
| "s2t_test_pairs": 75332, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t7p50.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t8p00", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 8.0, |
| "val_timepoint": 2.5, |
| "n_train": 170254, |
| "n_val": 6916, |
| "n_test": 4018, |
| "s2t_test_pairs": 93418, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t8p00.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t8p25", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 8.25, |
| "val_timepoint": 2.5, |
| "n_train": 170344, |
| "n_val": 6916, |
| "n_test": 3928, |
| "s2t_test_pairs": 18485, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t8p25.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t8p50", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 8.5, |
| "val_timepoint": 2.5, |
| "n_train": 170699, |
| "n_val": 6916, |
| "n_test": 3573, |
| "s2t_test_pairs": 42094, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t8p50.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t8p75", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 8.75, |
| "val_timepoint": 2.5, |
| "n_train": 171130, |
| "n_val": 6916, |
| "n_test": 3142, |
| "s2t_test_pairs": 47972, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t8p75.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t9p00", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 9.0, |
| "val_timepoint": 2.5, |
| "n_train": 171193, |
| "n_val": 6916, |
| "n_test": 3079, |
| "s2t_test_pairs": 32002, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t9p00.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t9p50", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 9.5, |
| "val_timepoint": 2.5, |
| "n_train": 171975, |
| "n_val": 6916, |
| "n_test": 2297, |
| "s2t_test_pairs": 72156, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t9p50.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t10p00", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 10.0, |
| "val_timepoint": 2.5, |
| "n_train": 171853, |
| "n_val": 6916, |
| "n_test": 2419, |
| "s2t_test_pairs": 12626, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t10p00.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t10p50", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 10.5, |
| "val_timepoint": 2.5, |
| "n_train": 172286, |
| "n_val": 6916, |
| "n_test": 1986, |
| "s2t_test_pairs": 27710, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t10p50.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t11p50", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 11.5, |
| "val_timepoint": 2.5, |
| "n_train": 172030, |
| "n_val": 6916, |
| "n_test": 2242, |
| "s2t_test_pairs": 25691, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t11p50.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t12p00", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 12.0, |
| "val_timepoint": 2.5, |
| "n_train": 171843, |
| "n_val": 6916, |
| "n_test": 2429, |
| "s2t_test_pairs": 11944, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t12p00.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t12p50", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 12.5, |
| "val_timepoint": 2.5, |
| "n_train": 172019, |
| "n_val": 6916, |
| "n_test": 2253, |
| "s2t_test_pairs": 26153, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t12p50.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t13p00", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 13.0, |
| "val_timepoint": 2.5, |
| "n_train": 172126, |
| "n_val": 6916, |
| "n_test": 2146, |
| "s2t_test_pairs": 23319, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t13p00.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t13p50", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 13.5, |
| "val_timepoint": 2.5, |
| "n_train": 171899, |
| "n_val": 6916, |
| "n_test": 2373, |
| "s2t_test_pairs": 14293, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t13p50.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t14p50", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 14.5, |
| "val_timepoint": 2.5, |
| "n_train": 171549, |
| "n_val": 6916, |
| "n_test": 2723, |
| "s2t_test_pairs": 47597, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t14p50.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t16p00", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 16.0, |
| "val_timepoint": 2.5, |
| "n_train": 170830, |
| "n_val": 6916, |
| "n_test": 3442, |
| "s2t_test_pairs": 99246, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t16p00.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t17p00", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 17.0, |
| "val_timepoint": 2.5, |
| "n_train": 170594, |
| "n_val": 6916, |
| "n_test": 3678, |
| "s2t_test_pairs": 101361, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t17p00.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t17p50", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 17.5, |
| "val_timepoint": 2.5, |
| "n_train": 170203, |
| "n_val": 6916, |
| "n_test": 4069, |
| "s2t_test_pairs": 54067, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t17p50.npz" |
| }, |
| { |
| "fold_id": "B::GSE115943::test_t18p00", |
| "protocol": "B", |
| "series_scope": "GSE115943", |
| "dataset_keys": [ |
| "GSE115943::C1", |
| "GSE115943::C2" |
| ], |
| "test_timepoint": 18.0, |
| "val_timepoint": 2.5, |
| "n_train": 170472, |
| "n_val": 6916, |
| "n_test": 3800, |
| "s2t_test_pairs": 88452, |
| "s2t_val_pairs": 265828, |
| "partition_file": "fold_partitions/B__GSE115943__test_t18p00.npz" |
| }, |
| { |
| "fold_id": "B::GSE140802::GSM4185642_stateFate_inVitro::test_t2p00", |
| "protocol": "B", |
| "series_scope": "GSE140802::GSM4185642_stateFate_inVitro", |
| "dataset_keys": [ |
| "GSE140802::GSM4185642_stateFate_inVitro" |
| ], |
| "test_timepoint": 2.0, |
| "val_timepoint": 4.0, |
| "n_train": 54140, |
| "n_val": 48498, |
| "n_test": 28249, |
| "s2t_test_pairs": 1, |
| "s2t_val_pairs": 1, |
| "partition_file": "fold_partitions/B__GSE140802__GSM4185642_stateFate_inVitro__test_t2p00.npz" |
| }, |
| { |
| "fold_id": "B::GSE140802::GSM4185642_stateFate_inVitro::test_t4p00", |
| "protocol": "B", |
| "series_scope": "GSE140802::GSM4185642_stateFate_inVitro", |
| "dataset_keys": [ |
| "GSE140802::GSM4185642_stateFate_inVitro" |
| ], |
| "test_timepoint": 4.0, |
| "val_timepoint": 2.0, |
| "n_train": 54140, |
| "n_val": 28249, |
| "n_test": 48498, |
| "s2t_test_pairs": 1, |
| "s2t_val_pairs": 1, |
| "partition_file": "fold_partitions/B__GSE140802__GSM4185642_stateFate_inVitro__test_t4p00.npz" |
| }, |
| { |
| "fold_id": "B::GSE140802::GSM4185642_stateFate_inVitro::test_t6p00", |
| "protocol": "B", |
| "series_scope": "GSE140802::GSM4185642_stateFate_inVitro", |
| "dataset_keys": [ |
| "GSE140802::GSM4185642_stateFate_inVitro" |
| ], |
| "test_timepoint": 6.0, |
| "val_timepoint": 4.0, |
| "n_train": 28249, |
| "n_val": 48498, |
| "n_test": 54140, |
| "s2t_test_pairs": 1, |
| "s2t_val_pairs": 1, |
| "partition_file": "fold_partitions/B__GSE140802__GSM4185642_stateFate_inVitro__test_t6p00.npz" |
| }, |
| { |
| "fold_id": "B::tome-mouse::test_t4p50", |
| "protocol": "B", |
| "series_scope": "tome-mouse", |
| "dataset_keys": [ |
| "tome-mouse" |
| ], |
| "test_timepoint": 4.5, |
| "val_timepoint": 12.5, |
| "n_train": 1366175, |
| "n_val": 292726, |
| "n_test": 67, |
| "s2t_test_pairs": 1458, |
| "s2t_val_pairs": 32263511, |
| "partition_file": "fold_partitions/B__tome-mouse__test_t4p50.npz" |
| }, |
| { |
| "fold_id": "B::tome-mouse::test_t6p25", |
| "protocol": "B", |
| "series_scope": "tome-mouse", |
| "dataset_keys": [ |
| "tome-mouse" |
| ], |
| "test_timepoint": 6.25, |
| "val_timepoint": 12.5, |
| "n_train": 1365921, |
| "n_val": 292726, |
| "n_test": 321, |
| "s2t_test_pairs": 20600, |
| "s2t_val_pairs": 32263511, |
| "partition_file": "fold_partitions/B__tome-mouse__test_t6p25.npz" |
| }, |
| { |
| "fold_id": "B::tome-mouse::test_t6p75", |
| "protocol": "B", |
| "series_scope": "tome-mouse", |
| "dataset_keys": [ |
| "tome-mouse" |
| ], |
| "test_timepoint": 6.75, |
| "val_timepoint": 12.5, |
| "n_train": 1364167, |
| "n_val": 292726, |
| "n_test": 2075, |
| "s2t_test_pairs": 1409580, |
| "s2t_val_pairs": 32263511, |
| "partition_file": "fold_partitions/B__tome-mouse__test_t6p75.npz" |
| }, |
| { |
| "fold_id": "B::tome-mouse::test_t7p25", |
| "protocol": "B", |
| "series_scope": "tome-mouse", |
| "dataset_keys": [ |
| "tome-mouse" |
| ], |
| "test_timepoint": 7.25, |
| "val_timepoint": 12.5, |
| "n_train": 1352705, |
| "n_val": 292726, |
| "n_test": 13537, |
| "s2t_test_pairs": 3456149, |
| "s2t_val_pairs": 32263511, |
| "partition_file": "fold_partitions/B__tome-mouse__test_t7p25.npz" |
| }, |
| { |
| "fold_id": "B::tome-mouse::test_t7p50", |
| "protocol": "B", |
| "series_scope": "tome-mouse", |
| "dataset_keys": [ |
| "tome-mouse" |
| ], |
| "test_timepoint": 7.5, |
| "val_timepoint": 12.5, |
| "n_train": 1355248, |
| "n_val": 292726, |
| "n_test": 10994, |
| "s2t_test_pairs": 2564466, |
| "s2t_val_pairs": 32263511, |
| "partition_file": "fold_partitions/B__tome-mouse__test_t7p50.npz" |
| }, |
| { |
| "fold_id": "B::tome-mouse::test_t8p25", |
| "protocol": "B", |
| "series_scope": "tome-mouse", |
| "dataset_keys": [ |
| "tome-mouse" |
| ], |
| "test_timepoint": 8.25, |
| "val_timepoint": 12.5, |
| "n_train": 1350307, |
| "n_val": 292726, |
| "n_test": 15935, |
| "s2t_test_pairs": 2369504, |
| "s2t_val_pairs": 32263511, |
| "partition_file": "fold_partitions/B__tome-mouse__test_t8p25.npz" |
| }, |
| { |
| "fold_id": "B::tome-mouse::test_t9p50", |
| "protocol": "B", |
| "series_scope": "tome-mouse", |
| "dataset_keys": [ |
| "tome-mouse" |
| ], |
| "test_timepoint": 9.5, |
| "val_timepoint": 12.5, |
| "n_train": 1255164, |
| "n_val": 292726, |
| "n_test": 111078, |
| "s2t_test_pairs": 17251463, |
| "s2t_val_pairs": 32263511, |
| "partition_file": "fold_partitions/B__tome-mouse__test_t9p50.npz" |
| }, |
| { |
| "fold_id": "B::tome-mouse::test_t12p50", |
| "protocol": "B", |
| "series_scope": "tome-mouse", |
| "dataset_keys": [ |
| "tome-mouse" |
| ], |
| "test_timepoint": 12.5, |
| "val_timepoint": 9.5, |
| "n_train": 1255164, |
| "n_val": 111078, |
| "n_test": 292726, |
| "s2t_test_pairs": 32263511, |
| "s2t_val_pairs": 17251463, |
| "partition_file": "fold_partitions/B__tome-mouse__test_t12p50.npz" |
| }, |
| { |
| "fold_id": "B::tome-mouse::test_t13p50", |
| "protocol": "B", |
| "series_scope": "tome-mouse", |
| "dataset_keys": [ |
| "tome-mouse" |
| ], |
| "test_timepoint": 13.5, |
| "val_timepoint": 9.5, |
| "n_train": 1282766, |
| "n_val": 111078, |
| "n_test": 265124, |
| "s2t_test_pairs": 19103737, |
| "s2t_val_pairs": 17251463, |
| "partition_file": "fold_partitions/B__tome-mouse__test_t13p50.npz" |
| } |
| ] |
| }, |
| "C": { |
| "folds": [ |
| { |
| "fold_id": "C::GSE115943::holdout_GSE115943__C1", |
| "protocol": "C", |
| "dataset_family": "GSE115943", |
| "held_out_replicate": "GSE115943::C1", |
| "n_train": 80671, |
| "n_val": 8963, |
| "n_test": 91554, |
| "partition_file": "fold_partitions/C__GSE115943__holdout_GSE115943__C1.npz" |
| }, |
| { |
| "fold_id": "C::GSE115943::holdout_GSE115943__C2", |
| "protocol": "C", |
| "dataset_family": "GSE115943", |
| "held_out_replicate": "GSE115943::C2", |
| "n_train": 82399, |
| "n_val": 9155, |
| "n_test": 89634, |
| "partition_file": "fold_partitions/C__GSE115943__holdout_GSE115943__C2.npz" |
| }, |
| { |
| "fold_id": "C::GSE140802::holdout_GSE140802__GSM4185642_stateFate_inVitro", |
| "protocol": "C", |
| "dataset_family": "GSE140802", |
| "held_out_replicate": "GSE140802::GSM4185642_stateFate_inVitro", |
| "n_train": 222524, |
| "n_val": 24724, |
| "n_test": 130887, |
| "partition_file": "fold_partitions/C__GSE140802__holdout_GSE140802__GSM4185642_stateFate_inVitro.npz" |
| }, |
| { |
| "fold_id": "C::GSE140802::holdout_GSE140802__GSM4185643_stateFate_inVivo", |
| "protocol": "C", |
| "dataset_family": "GSE140802", |
| "held_out_replicate": "GSE140802::GSM4185643_stateFate_inVivo", |
| "n_train": 176366, |
| "n_val": 19596, |
| "n_test": 182173, |
| "partition_file": "fold_partitions/C__GSE140802__holdout_GSE140802__GSM4185643_stateFate_inVivo.npz" |
| }, |
| { |
| "fold_id": "C::GSE140802::holdout_GSE140802__GSM4185644_stateFate_cytokinePerturbation", |
| "protocol": "C", |
| "dataset_family": "GSE140802", |
| "held_out_replicate": "GSE140802::GSM4185644_stateFate_cytokinePerturbation", |
| "n_train": 281754, |
| "n_val": 31306, |
| "n_test": 65075, |
| "partition_file": "fold_partitions/C__GSE140802__holdout_GSE140802__GSM4185644_stateFate_cytokinePerturbation.npz" |
| } |
| ] |
| }, |
| "D": { |
| "folds": [ |
| { |
| "fold_id": "D::holdout_E-MTAB-6967", |
| "protocol": "D", |
| "held_out_family": "E-MTAB-6967", |
| "n_train": 2112490, |
| "n_val": 234721, |
| "n_test": 130006, |
| "partition_file": "fold_partitions/D__holdout_E-MTAB-6967.npz" |
| }, |
| { |
| "fold_id": "D::holdout_GSE106340", |
| "protocol": "D", |
| "held_out_family": "GSE106340", |
| "n_train": 2167991, |
| "n_val": 240887, |
| "n_test": 68339, |
| "partition_file": "fold_partitions/D__holdout_GSE106340.npz" |
| }, |
| { |
| "fold_id": "D::holdout_GSE115943", |
| "protocol": "D", |
| "held_out_family": "GSE115943", |
| "n_train": 2066427, |
| "n_val": 229602, |
| "n_test": 181188, |
| "partition_file": "fold_partitions/D__holdout_GSE115943.npz" |
| }, |
| { |
| "fold_id": "D::holdout_GSE132188", |
| "protocol": "D", |
| "held_out_family": "GSE132188", |
| "n_train": 2195316, |
| "n_val": 243924, |
| "n_test": 37977, |
| "partition_file": "fold_partitions/D__holdout_GSE132188.npz" |
| }, |
| { |
| "fold_id": "D::holdout_GSE140802", |
| "protocol": "D", |
| "held_out_family": "GSE140802", |
| "n_train": 1889174, |
| "n_val": 209908, |
| "n_test": 378135, |
| "partition_file": "fold_partitions/D__holdout_GSE140802.npz" |
| }, |
| { |
| "fold_id": "D::holdout_GSE275562", |
| "protocol": "D", |
| "held_out_family": "GSE275562", |
| "n_train": 2209152, |
| "n_val": 245461, |
| "n_test": 22604, |
| "partition_file": "fold_partitions/D__holdout_GSE275562.npz" |
| }, |
| { |
| "fold_id": "D::holdout_tome-mouse", |
| "protocol": "D", |
| "held_out_family": "tome-mouse", |
| "n_train": 736425, |
| "n_val": 81824, |
| "n_test": 1658968, |
| "partition_file": "fold_partitions/D__holdout_tome-mouse.npz" |
| } |
| ] |
| } |
| }, |
| "summary": { |
| "n_folds_A": 1, |
| "n_folds_B": 50, |
| "n_folds_C": 5, |
| "n_folds_D": 7 |
| } |
| } |
