The full dataset viewer is not available (click to read why). Only showing a preview of the rows.
The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 39 new columns ({'atom_co_rel', 'gene_taxid', 'pairedcys_ratio', 'max_temp', 'min_temp', 'protein_type', 'interchain_atom_prop', 'coil_count', 'length', 'max_pairwise_distance', 'cys_prop', 'sheet_count', 'num_cys', 'chain_index', 'host_superkingdom', 'host_class', 'co_10_0', 'interchain_residue_prop', 'co_6_0', 'file', 'radius_of_gyration_over_cube_root_length', 'atom_co_abs', 'helix_proportion', 'sheet_proportion', 'has_similar', 'radius_of_gyration', 'num_paired', 'helix_count', 'mean_pairwise_distance', 'contact_order_over_sqrt_length', 'locus', 'host_taxid', 'gene_class', 'subclass', 'chain_id', 'interchain_contact_count', 'avg_temp', 'scTM', 'gene_superkingdom'}) and 1 missing columns ({'method'}).
This happened while the csv dataset builder was generating data using
hf://datasets/MurrellLab/ProteinChains/pdb-table.csv (at revision 4fe8bedfee5c2ed98590bc2627135a17ca390d8d)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1831, in _prepare_split_single
writer.write_table(table)
File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 714, in write_table
pa_table = table_cast(pa_table, self._schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2272, in table_cast
return cast_table_to_schema(table, schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
pdb_id: string
chain_id: string
length: int64
coil_count: int64
helix_count: int64
sheet_count: int64
gene_taxid: double
host_taxid: double
max_temp: double
min_temp: double
avg_temp: double
protein_type: string
locus: string
subclass: string
gene_superkingdom: string
host_superkingdom: string
gene_class: string
host_class: string
file: string
chain_index: int64
interchain_contact_count: int64
interchain_residue_prop: double
interchain_atom_prop: double
atom_co_abs: double
atom_co_rel: double
co_6_0: double
co_10_0: double
radius_of_gyration: double
mean_pairwise_distance: double
max_pairwise_distance: double
num_paired: int64
num_cys: int64
scTM: double
contact_order_over_sqrt_length: double
radius_of_gyration_over_cube_root_length: double
helix_proportion: double
sheet_proportion: double
cys_prop: double
pairedcys_ratio: double
has_similar: bool
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 5275
to
{'pdb_id': Value('string'), 'method': Value('string')}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1334, in compute_config_parquet_and_info_response
parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 911, in stream_convert_to_parquet
builder._prepare_split(
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1702, in _prepare_split
for job_id, done, content in self._prepare_split_single(
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1833, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 39 new columns ({'atom_co_rel', 'gene_taxid', 'pairedcys_ratio', 'max_temp', 'min_temp', 'protein_type', 'interchain_atom_prop', 'coil_count', 'length', 'max_pairwise_distance', 'cys_prop', 'sheet_count', 'num_cys', 'chain_index', 'host_superkingdom', 'host_class', 'co_10_0', 'interchain_residue_prop', 'co_6_0', 'file', 'radius_of_gyration_over_cube_root_length', 'atom_co_abs', 'helix_proportion', 'sheet_proportion', 'has_similar', 'radius_of_gyration', 'num_paired', 'helix_count', 'mean_pairwise_distance', 'contact_order_over_sqrt_length', 'locus', 'host_taxid', 'gene_class', 'subclass', 'chain_id', 'interchain_contact_count', 'avg_temp', 'scTM', 'gene_superkingdom'}) and 1 missing columns ({'method'}).
This happened while the csv dataset builder was generating data using
hf://datasets/MurrellLab/ProteinChains/pdb-table.csv (at revision 4fe8bedfee5c2ed98590bc2627135a17ca390d8d)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
pdb_id string | method string |
|---|---|
7GTK | X-RAY DIFFRACTION |
7SVQ | X-RAY DIFFRACTION |
8UGQ | ELECTRON MICROSCOPY |
6BZ6 | X-RAY DIFFRACTION |
7WJS | X-RAY DIFFRACTION |
7ONX | X-RAY DIFFRACTION |
8PN1 | ELECTRON MICROSCOPY |
3CWY | X-RAY DIFFRACTION |
2E72 | SOLUTION NMR |
1DQL | X-RAY DIFFRACTION |
5K1L | X-RAY DIFFRACTION |
6V01 | ELECTRON MICROSCOPY |
8AV2 | X-RAY DIFFRACTION |
4Q1D | X-RAY DIFFRACTION |
6QA6 | X-RAY DIFFRACTION |
6RGX | X-RAY DIFFRACTION |
2ATL | X-RAY DIFFRACTION |
5NR1 | X-RAY DIFFRACTION |
5W4R | X-RAY DIFFRACTION |
1O5U | X-RAY DIFFRACTION |
4ASZ | X-RAY DIFFRACTION |
6BD7 | X-RAY DIFFRACTION |
1EV1 | X-RAY DIFFRACTION |
5MAR | X-RAY DIFFRACTION |
7OSX | X-RAY DIFFRACTION |
1GWH | X-RAY DIFFRACTION |
6M30 | X-RAY DIFFRACTION |
8KC9 | ELECTRON MICROSCOPY |
7N2Z | X-RAY DIFFRACTION |
3LON | X-RAY DIFFRACTION |
1KLD | SOLUTION NMR |
2BGI | X-RAY DIFFRACTION |
4IB4 | X-RAY DIFFRACTION |
7BNU | X-RAY DIFFRACTION |
8EF9 | ELECTRON MICROSCOPY |
7XQL | X-RAY DIFFRACTION |
1Z6X | X-RAY DIFFRACTION |
6NNB | SOLUTION NMR |
1EYV | X-RAY DIFFRACTION |
3QAE | X-RAY DIFFRACTION |
7OI1 | X-RAY DIFFRACTION |
3HTY | X-RAY DIFFRACTION |
2EQR | SOLUTION NMR |
6STK | X-RAY DIFFRACTION |
6UFO | X-RAY DIFFRACTION |
8BHH | X-RAY DIFFRACTION |
7UNK | ELECTRON MICROSCOPY |
5TQF | X-RAY DIFFRACTION |
3TEE | X-RAY DIFFRACTION |
4HOD | X-RAY DIFFRACTION |
5FXY | X-RAY DIFFRACTION |
5NON | X-RAY DIFFRACTION |
2DDG | X-RAY DIFFRACTION |
3CVK | X-RAY DIFFRACTION |
3VN5 | X-RAY DIFFRACTION |
5IVB | X-RAY DIFFRACTION |
5ML6 | X-RAY DIFFRACTION |
2IAL | X-RAY DIFFRACTION |
6SGD | X-RAY DIFFRACTION |
6FCA | X-RAY DIFFRACTION |
7PSQ | X-RAY DIFFRACTION |
3HWB | X-RAY DIFFRACTION |
2VWN | X-RAY DIFFRACTION |
5PWV | X-RAY DIFFRACTION |
8CFG | X-RAY DIFFRACTION |
8ZJV | X-RAY DIFFRACTION |
4JDB | X-RAY DIFFRACTION |
2NUD | X-RAY DIFFRACTION |
3H9J | X-RAY DIFFRACTION |
1UOW | X-RAY DIFFRACTION |
4U5I | X-RAY DIFFRACTION |
4NG4 | X-RAY DIFFRACTION |
2VCZ | X-RAY DIFFRACTION |
7MLY | ELECTRON MICROSCOPY |
4RZM | X-RAY DIFFRACTION |
3IQF | X-RAY DIFFRACTION |
8XGK | X-RAY DIFFRACTION |
8K9M | ELECTRON MICROSCOPY |
1ASD | X-RAY DIFFRACTION |
8SAP | X-RAY DIFFRACTION |
6JE7 | X-RAY DIFFRACTION |
7JLT | X-RAY DIFFRACTION |
1TVD | X-RAY DIFFRACTION |
3BWR | X-RAY DIFFRACTION |
3KHB | X-RAY DIFFRACTION |
5SX0 | X-RAY DIFFRACTION |
1A5H | X-RAY DIFFRACTION |
1RCW | X-RAY DIFFRACTION |
2CLD | X-RAY DIFFRACTION |
6TF8 | X-RAY DIFFRACTION |
6PPZ | X-RAY DIFFRACTION |
7UL0 | X-RAY DIFFRACTION |
4LJB | X-RAY DIFFRACTION |
8G2I | X-RAY DIFFRACTION |
2ICU | X-RAY DIFFRACTION |
2QJU | X-RAY DIFFRACTION |
2WFR | X-RAY DIFFRACTION |
4OLH | X-RAY DIFFRACTION |
7UBN | ELECTRON MICROSCOPY |
1C4T | X-RAY DIFFRACTION |
End of preview.