Upload your_file.txt with huggingface_hub

your_file.txt

@@ -0,0 +1,89 @@
+single-cell-python-packages:
+  description: Vector database of single-cell python packages.
+  type: vector_db
+  parameters:
+    embedding_model: text-embedding-3-large
+    chunk_size: 4000
+    chunk_overlap: 200
+  items:
+    scanpy:
+      type: package documentation
+      url: https://scanpy.readthedocs.io/en/stable/index.html
+    anndata:
+      type: package documentation
+      url: https://anndata.readthedocs.io/en/latest/
+    scvi-tools:
+      type: package documentation
+      url: https://docs.scvi-tools.org/en/stable/
+    squidpy:
+      type: package documentation
+      url: https://squidpy.readthedocs.io/en/stable/
+    dynamo:
+      type: package documentation
+      url: https://dynamo-release.readthedocs.io/en/latest/
+    CellphoneDB:
+      type: package documentation
+      url: https://cellphonedb.readthedocs.io/en/latest/
+    omicverse:
+      type: package documentation
+      url: https://starlitnightly.github.io/omicverse/
+    spateo:
+      type: package documentation
+      url: https://spateo-release.readthedocs.io/en/latest/
+    spatialdata:
+      type: package documentation
+      url: https://spatialdata.scverse.org/en/latest/
+    muon:
+      type: package documentation
+      url: https://muon.readthedocs.io/en/latest/
+    mudata:
+      type: package documentation
+      url: https://mudata.readthedocs.io/en/latest/
+    scirpy:
+      type: package documentation
+      url: https://scirpy.scverse.org/en/latest/
+    scvelo:
+      type: package documentation
+      url: https://scvelo.readthedocs.io/en/stable/
+    pydeseq2:
+      type: package documentation
+      url: https://pydeseq2.readthedocs.io/en/latest/
+    CellOracle:
+      type: package documentation
+      url: https://morris-lab.github.io/CellOracle.documentation/
+    Moscot:
+      type: package documentation
+      url: https://moscot.readthedocs.io/en/latest/
+    liana:
+      type: package documentation
+      url: https://liana-py.readthedocs.io/en/latest/
+    sopa:
+      type: package documentation
+      url: https://gustaveroussy.github.io/sopa/
+    tangram:
+      type: package documentation
+      url: https://tangram-sc.readthedocs.io/en/latest/index.html
+    cellxgene-census:
+      type: package documentation
+      url: https://chanzuckerberg.github.io/cellxgene-census/index.html
+    cellrank:
+      type: package documentation
+      url: https://cellrank.readthedocs.io/en/latest/
+    bento-tools:
+      type: package documentation
+      url: https://bento-tools.readthedocs.io/en/latest/index.html
+    hotspotsc:
+      type: package documentation
+      url: https://hotspot.readthedocs.io/en/latest/index.html
+    Palantir:
+      type: package documentation
+      url: https://palantir.readthedocs.io/en/latest/
+    pertpy:
+      type: package documentation
+      url: https://pertpy.readthedocs.io/en/latest/
+    cell2location:
+      type: package documentation
+      url: https://pertpy.readthedocs.io/en/stable/
+    snapatac2:
+      type: package documentation
+      url: https://kzhang.org/SnapATAC2/index.html