NanoFlow data prep v2 — prep_summary.json

ANDD-processed/complexa_finetuning/prep_summary.json

@@ -1,1670 +1,70 @@
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-    {
-      "pdb_id": "8HEG",
-      "reason": "chain_match_failed"
-    },
-    {
-      "pdb_id": "8HJ0",
-      "reason": "chain_match_failed"
-    },
-    {
-      "pdb_id": "8HJ2",
-      "reason": "chain_match_failed"
-    },
-    {
-      "pdb_id": "8HR2",
-      "reason": "chain_match_failed"
-    },
-    {
-      "pdb_id": "8I2G",
-      "reason": "chain_match_failed"
-    },
-    {
-      "pdb_id": "8IQ4",
-      "reason": "chain_match_failed"
-    },
     {
       "pdb_id": "8JJV",
       "reason": "chain_match_failed"
     },
-    {
-      "pdb_id": "8JTW",
-      "reason": "chain_match_failed"
-    },
-    {
-      "pdb_id": "8K3K",
-      "reason": "chain_match_failed"
-    },
-    {
-      "pdb_id": "8ONT",
-      "reason": "chain_match_failed"
-    },
-    {
-      "pdb_id": "8PYR",
-      "reason": "chain_match_failed"
-    },
-    {
-      "pdb_id": "8QF5",
-      "reason": "chain_match_failed"
-    },
-    {
-      "pdb_id": "8XGR",
-      "reason": "chain_match_failed"
-    },
     {
       "pdb_id": "8XOF",
-      "reason": "parse_error: [Errno 2] No such file or directory: '/tmp/tmp4qmncqim/8XOF_raw.pdb'"
+      "reason": "download_failed"
     },
     {
       "pdb_id": "ENTRY_43909",
@@ -1795,5 +195,9 @@
       "reason": "download_failed"
     }
   ],
-  "total_pdb_ids": 555
+  "total_pdb_ids": 555,
+  "known_limitations": [
+    "Some RCSB entries are mmCIF-only and will show as download_failed",
+    "Chain assignment is heuristic; multimeric antigens/symmetric complexes may misassign"
+  ]
 }