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README.md
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@@ -30,6 +30,43 @@ The data is organized into a highly efficient, indexed HDF5 format, allowing for
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- Behavioral Data: Synchronized treadmill speed and pupil radius.
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- Eye Tracking: Pupil center coordinates (x, y) for gaze analysis.
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## ⚙️ Setup & Installation
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There are two ways of accessing the contents of this repo.
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- Behavioral Data: Synchronized treadmill speed and pupil radius.
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- Eye Tracking: Pupil center coordinates (x, y) for gaze analysis.
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```text
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root/
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├── 📂 BRAIN_AREAS/ # Anatomical Index
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│ └── 📂 <area_name>/ # e.g., V1, AL, LM, RL
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│ └── 🔗 <session_id> -> /sessions/<session_id>
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│
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├── 📂 SESSIONS/ # Primary Data Storage
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│ └── 📂 <session_id>/ # e.g., 4_7, 5_6
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│ ├── 📂 META/ # Session-wide Metadata
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│ │ ├── 📂 AREA_INDICES/ # Pre-calculated neuron masks
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│ │ │ └── 📄 <area_name> [Dataset: (N_area_neurons,)]
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│ │ ├── 📄 brain_areas [Dataset: (N_total_neurons,)]
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│ │ ├── 📄 coordinates [Dataset: (N_total_neurons, 3)]
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│ │ ├── 📄 unit_ids [Dataset: (N_total_neurons,)]
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│ │ └── 📄 total_scan_times [Dataset: (Total_Frames,)]
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│ │ └── (Attr) fps [Float: Sampling rate]
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│ └── 📂 TRIALS/ # Individual trial folders
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│ └── 📂 <trial_idx>/ # Chronological trial index
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│ ├── 📄 responses [Dataset: (N_neurons, F_trial)]
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│ ├── 📄 behavior [Dataset: (2, F_trial)]
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│ ├── 📄 pupil_center [Dataset: (2, F_trial)]
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│ ├── 📄 frame_times [Dataset: (F_trial,)]
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│ └── (Attr) condition_hash [String: Reference to video]
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│
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├── 📂 TYPES/ # Stimulus Category Index
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│ └── 📂 <stim_type>/ # e.g., Clip, Monet2, Trippy
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│ └── 🔗 <encoded_hash> -> /videos/<encoded_hash>
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│
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└── 📂 VIDEOS/ # Stimulus Library (Saved once)
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└── 📂 <encoded_hash>/ # Encoded version of condition_hash
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├── 📄 clip [Dataset: (Frames, H, W)]
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├── 📂 INSTANCES/ # Reverse-index to trials
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│ └── 🔗 <session_id>_tr<trial_idx> -> /sessions/<session_id>/trials/<trial_idx>
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└── (Attr) original_hash [String: The raw hash]
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└── (Attr) type [String: Stimulus type]
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```
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## ⚙️ Setup & Installation
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There are two ways of accessing the contents of this repo.
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