source stringclasses 1
value | repo stringlengths 5 63 | repo_url stringlengths 24 82 | path stringlengths 5 167 | language stringclasses 1
value | license stringclasses 5
values | stars int64 10 51.4k | ref stringclasses 23
values | size_bytes int64 200 258k | text stringlengths 137 258k |
|---|---|---|---|---|---|---|---|---|---|
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/chaintetnig2.rb | Ruby | mit | 19 | master | 3,064 | # = hg18/chaintetnig2.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/rmsk.rb | Ruby | mit | 19 | master | 3,027 | # = hg18/rmsk.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, the Rmsk table is actually separated
# into "chr1_rmsk", "chr2_rmsk", etc. The Rmsk class dynamically
# define Rmsk::Ch... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/chainbraflo1.rb | Ruby | mit | 19 | master | 3,064 | # = hg18/chainbraflo1.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/chainxentro2.rb | Ruby | mit | 19 | master | 3,064 | # = hg18/chainxentro2.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/chainmm9.rb | Ruby | mit | 19 | master | 3,040 | # = hg18/chainmm9.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/chaincaljac1.rb | Ruby | mit | 19 | master | 3,064 | # = hg18/chaincaljac1.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/chaincanfam2.rb | Ruby | mit | 19 | master | 3,054 | # = hg18/chaincanfam2.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/chaintaegut1.rb | Ruby | mit | 19 | master | 3,061 | # = hg18/chaintaegut1
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/chainrhemac2.rb | Ruby | mit | 19 | master | 3,061 | # = hg18/chainrhemac2
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/chainself.rb | Ruby | mit | 19 | master | 3,046 | # = hg18/chainself.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/chainfelcat3.rb | Ruby | mit | 19 | master | 3,064 | # = hg18/chainfelcat3.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/chainornana1.rb | Ruby | mit | 19 | master | 3,064 | # = hg18/chainornana1.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/chainfr2.rb | Ruby | mit | 19 | master | 3,040 | # = hg18/chainfr2.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/gold.rb | Ruby | mit | 19 | master | 3,040 | # = hg18/gold.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, ... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/chainstrpur2.rb | Ruby | mit | 19 | master | 3,064 | # = hg18/chainstrpur2.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/chainanocar1.rb | Ruby | mit | 19 | master | 3,064 | # = hg18/chainanocar1.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/chainrn4.rb | Ruby | mit | 19 | master | 3,040 | # = hg18/chainrn4.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/chaingalgal3.rb | Ruby | mit | 19 | master | 3,064 | # = hg18/chaingalgal3.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/chaingasacu1.rb | Ruby | mit | 19 | master | 3,064 | # = hg18/chaingasacu1.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/chainpetmar1.rb | Ruby | mit | 19 | master | 3,064 | # = hg18/chainpetmar1.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/chaindanrer5.rb | Ruby | mit | 19 | master | 3,064 | # = hg18/chaindanrer5.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/hg18/intronest.rb | Ruby | mit | 19 | master | 3,046 | # = hg18/intronest.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/pripac1/chaince6link.rb | Ruby | mit | 19 | master | 3,107 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/pripac1/chaincb3.rb | Ruby | mit | 19 | master | 3,109 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/pripac1/chaincb3link.rb | Ruby | mit | 19 | master | 3,107 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/pripac1/gold.rb | Ruby | mit | 19 | master | 3,073 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# his table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.find_by_interval calls a... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/pripac1/chaincaerem2link.rb | Ruby | mit | 19 | master | 3,115 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/pripac1/chaincaerem2.rb | Ruby | mit | 19 | master | 3,117 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/pripac1/chaince6.rb | Ruby | mit | 19 | master | 3,109 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/pripac1/chaincaepb1link.rb | Ruby | mit | 19 | master | 3,113 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/pripac1/gap.rb | Ruby | mit | 19 | master | 3,093 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/pripac1/chaincaepb1.rb | Ruby | mit | 19 | master | 3,115 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/pripac1/rmsk.rb | Ruby | mit | 19 | master | 3,023 | # = rmsk.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, the Rmsk table is actually separated
# into "chr1_rmsk", "chr2_rmsk", etc. The Rmsk class dynamically
# define Rmsk::Chr1_Rm... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/gap.rb | Ruby | mit | 19 | master | 3,085 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/chainbraflo1link.rb | Ruby | mit | 19 | master | 3,124 | # = chainbraflo1link.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::C... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/intronest.rb | Ruby | mit | 19 | master | 3,069 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/chainrhemac2link.rb | Ruby | mit | 19 | master | 3,100 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/chainrhemac2.rb | Ruby | mit | 19 | master | 3,088 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/chaincanfam2link.rb | Ruby | mit | 19 | master | 3,124 | # = chainbraflo1link.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::C... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/chaingalgal3.rb | Ruby | mit | 19 | master | 3,088 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/chaingasacu1link.rb | Ruby | mit | 19 | master | 3,100 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/chainpetmar1.rb | Ruby | mit | 19 | master | 3,088 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/chaingasacu1.rb | Ruby | mit | 19 | master | 3,088 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/rmsk.rb | Ruby | mit | 19 | master | 3,015 | # = rmsk.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, the Rmsk table is actually separated
# into "chr1_rmsk", "chr2_rmsk", etc. The Rmsk class dynamically
# define Rmsk::Chr1_Rm... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/chainornana1.rb | Ruby | mit | 19 | master | 3,088 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/chainrn4link.rb | Ruby | mit | 19 | master | 3,088 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/chainornana1link.rb | Ruby | mit | 19 | master | 3,100 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/chainfr2link.rb | Ruby | mit | 19 | master | 3,088 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/chaincavpor3.rb | Ruby | mit | 19 | master | 3,088 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/est.rb | Ruby | mit | 19 | master | 3,061 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/chainorylat2link.rb | Ruby | mit | 19 | master | 3,100 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/chainponabe2.rb | Ruby | mit | 19 | master | 3,088 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/chainpetmar1link.rb | Ruby | mit | 19 | master | 3,100 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/chainbraflo1.rb | Ruby | mit | 19 | master | 3,108 | # = chainbraflo1.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/chainrn4.rb | Ruby | mit | 19 | master | 3,076 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/mrna.rb | Ruby | mit | 19 | master | 3,064 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/gold.rb | Ruby | mit | 19 | master | 3,088 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/chainfr2.rb | Ruby | mit | 19 | master | 3,076 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/chaincanfam2.rb | Ruby | mit | 19 | master | 3,109 | # = chaincanfam2.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/chainponabe2link.rb | Ruby | mit | 19 | master | 3,090 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/chaincavpor3link.rb | Ruby | mit | 19 | master | 3,100 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/chainorylat2.rb | Ruby | mit | 19 | master | 3,088 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/mm9/chaingalgal3link.rb | Ruby | mit | 19 | master | 3,100 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/drosim1/rmsk.rb | Ruby | mit | 19 | master | 3,023 | # = rmsk.rb
# Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, the Rmsk table is actually separated
# into "chr1_rmsk", "chr2_rmsk", etc. The Rmsk class dynamically
# define Rmsk::Chr1_Rm... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/drosim1/chaindm3.rb | Ruby | mit | 19 | master | 3,109 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/drosim1/est.rb | Ruby | mit | 19 | master | 3,069 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/drosim1/chaindm3link.rb | Ruby | mit | 19 | master | 3,107 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/drosim1/gold.rb | Ruby | mit | 19 | master | 3,096 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/drosim1/mrna.rb | Ruby | mit | 19 | master | 3,072 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/drosim1/intronest.rb | Ruby | mit | 19 | master | 3,077 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/drosim1/gap.rb | Ruby | mit | 19 | master | 3,093 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# In the hg18 database, this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# Rmsk.f... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/file/twobit.rb | Ruby | mit | 19 | master | 7,207 | #
# = twobit.rb
# handle UCSC's 2bit file (locally stored) to retrieve the reference sequence
#
# Copyright:: Copyright (C) 2011, 2012, 2014, 2017
# MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The MIT license
module Bio
module Ucsc
module File
class Tw... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/file/bytequeue.rb | Ruby | mit | 19 | master | 613 | #
# = bytequeue.rb
# a class for byte stream queues
#
# Copyright:: Copyright (C) 2011, 2012
# MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: Ruby license (Ryby's / GPLv2 dual)
module Bio
module Ucsc
module File
class ByteQueue
def initialize(str)... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dm3/chaindp3link.rb | Ruby | mit | 19 | master | 3,077 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dm3/chaindroyak2.rb | Ruby | mit | 19 | master | 3,077 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dm3/intronest.rb | Ruby | mit | 19 | master | 3,071 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dm3/chainanogam1.rb | Ruby | mit | 19 | master | 3,077 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dm3/gap.rb | Ruby | mit | 19 | master | 3,083 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dm3/chainapimel3.rb | Ruby | mit | 19 | master | 3,077 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dm3/chaindroper1.rb | Ruby | mit | 19 | master | 3,077 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dm3/chaindroere1.rb | Ruby | mit | 19 | master | 3,077 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dm3/rmsk.rb | Ruby | mit | 19 | master | 3,085 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dm3/chaindroana2.rb | Ruby | mit | 19 | master | 3,077 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dm3/chainanogam1link.rb | Ruby | mit | 19 | master | 3,085 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dm3/chainapimel3link.rb | Ruby | mit | 19 | master | 3,085 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dm3/chaindp3.rb | Ruby | mit | 19 | master | 3,069 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dm3/est.rb | Ruby | mit | 19 | master | 3,059 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dm3/chaindrosim1.rb | Ruby | mit | 19 | master | 3,077 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dm3/chaindroper1link.rb | Ruby | mit | 19 | master | 3,085 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dm3/chaindrosec1.rb | Ruby | mit | 19 | master | 3,077 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dm3/chaindroyak2link.rb | Ruby | mit | 19 | master | 3,085 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dm3/chaindroana2link.rb | Ruby | mit | 19 | master | 3,085 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dm3/chaindroere1link.rb | Ruby | mit | 19 | master | 3,085 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dm3/chaindrosec1link.rb | Ruby | mit | 19 | master | 3,085 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dm3/gold.rb | Ruby | mit | 19 | master | 3,085 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dm3/chaindrosim1link.rb | Ruby | mit | 19 | master | 3,085 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | lib/bio-ucsc/dm3/mrna.rb | Ruby | mit | 19 | master | 3,061 | # Copyright::
# Copyright (C) 2011 MISHIMA, Hiroyuki <missy at be.to / hmishima at nagasaki-u.ac.jp>
# License:: The Ruby licence (Ryby's / GPLv2 dual)
#
# this table is actually separated
# into "chr1_*", "chr2_*", etc. This class dynamically
# define *::Chr1_*, *::Chr2_*, etc. The
# find_by_interval calls an ap... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/taegut1_spec.rb | Ruby | mit | 19 | master | 18,708 | require "bio-ucsc"
require "pp"
describe "Bio::Ucsc::TaeGut1" do
before(:all) do
Bio::Ucsc::TaeGut1::DBConnection.connect
end
describe "Bio::Ucsc::TaeGut1::All_est" do
context ".first" do
it 'returns the first records' do
result = Bio::Ucsc::TaeGut1::All_est.first
pp result
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/dm3_spec.rb | Ruby | mit | 19 | master | 60,001 | require "bio-ucsc"
require "pp"
describe "Bio::Ucsc::Dm3" do
before(:all) do
Bio::Ucsc::Dm3::DBConnection.connect
end
describe "Bio::Ucsc::Dm3::AffyDrosDevSignal1" do
context ".first" do
it 'returns the first records' do
result = Bio::Ucsc::Dm3::AffyDrosDevSignal1.first
pp result
... |
github | misshie/bioruby-ucsc-api | https://github.com/misshie/bioruby-ucsc-api | spec/braflo1_spec.rb | Ruby | mit | 19 | master | 16,255 | require "bio-ucsc"
require "pp"
describe "Bio::Ucsc::BraFlo1" do
before(:all) do
Bio::Ucsc::BraFlo1::DBConnection.connect
end
describe "Bio::Ucsc::BraFlo1::All_est" do
context ".first" do
it 'returns the first records' do
result = Bio::Ucsc::BraFlo1::All_est.first
pp result
... |
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