Datasets:
Tasks:
Token Classification
Modalities:
Text
Formats:
parquet
Sub-tasks:
named-entity-recognition
Size:
1K - 10K
License:
add repo card
Browse files
README.md
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---
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dataset_info:
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features:
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- name: sentence
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- split: val
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path: data/val-*
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---
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---
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license: mit
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task_categories:
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- token-classification
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task_ids:
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- named-entity-recognition
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dataset_info:
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features:
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- name: sentence
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- split: val
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path: data/val-*
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---
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---
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{{ dataset_card }}
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---
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# Proposed Active Learning Data split
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This version of dataset is just a proposed split to test our planned active learning cycles
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Each of the split(train, validation), have been carefully selected to represent all 3 entities of interest
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**CellLine, CellType and Tissue**.
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##Dataset Description
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Each of the split contain the following features:
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- sentence: list of sentences
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- entities: list of dict of entities found in sentences
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- data_source: the source of the aricle where the sentence orginates
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Our dataset have been currated from 3 different domains to represent the 3 entities of interest:
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1. Single-Cell transciptomics: rich in CellTypes and Tissues
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2. ChembL assay desriptions: rich in CellLines
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3. Stem-Cell research: contains all 3 entities
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The articles from Stem-Cell have been collected from the CellFinder data repository:
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The creation CellFinder dataset is detailed at:
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>Mariana Neves, Alexander Damaschun, Andreas Kurtz, Ulf Leser (2012)
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>Annotating and evaluating text for stem cell research.
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>In Proceedings Third Workshop on Building and Evaluation Resources for Biomedical Text Mining (BioTxtM 2012),
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>Language Resources and Evaluation (LREC) 2012.
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---
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## Intended Use
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### Primary Use
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- Supervised NER training for biomedical NLP tasks
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### Not Intended For
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- Clinical or patient-level decision making
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---
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