CellFinder-cleaned_BRAT / 16316465.ann
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Upload cleaned BRAT cellfinder data
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T1 Species 3043 3048 human
T2 GeneProtein 3013 3019 Oct3/4
T3 Anatomy 1734 1756 pluripotent population
T4 GeneProtein 3199 3205 Oct3/4
T5 Anatomy 1784 1798 somatic tissue
T6 Species 5016 5021 mouse
T7 Species 5027 5032 human
T8 CellLine 5088 5095 NTERA-2
T9 CellComponent 6841 6849 membrane
T10 Species 4743 4748 mouse
T11 GeneProtein 5046 5076 pancreatic duodenal homeobox-1
T12 GeneProtein 5039 5044 PDX-1
T13 Species 11137 11141 Goat
T14 Species 5033 5038 mouse
T15 GeneProtein 11095 11098 CD9
T16 Species 11032 11037 human
T17 GeneProtein 3049 3056 Oct 3/4
T18 GeneProtein 12651 12656 GATA6
T19 GeneProtein 12658 12663 Nanog
T20 GeneProtein 13349 13352 IgG
T21 Species 10110 10115 mouse
T22 CellType 6625 6639 human ES cells
T23 CellType 13263 13270 B cells
T24 GeneProtein 9807 9812 SOX17
T25 Anatomy 14544 14551 culture
T26 GeneProtein 10020 10029 brachyury
T27 GeneProtein 10928 10933 SOX17
T28 Species 5827 5832 mouse
T29 Species 10938 10943 mouse
T30 GeneProtein 10949 10953 SOX2
T31 GeneProtein 10911 10916 PDX-1
T32 Species 10996 11001 mouse
T33 CellLine 4973 4981 Beta-TC6
T34 GeneProtein 5959 5963 SOX2
T35 GeneProtein 11114 11124 E-cadherin
T36 Species 9801 9806 human
T37 Anatomy 14594 14597 EBs
T38 Species 7933 7938 human
T39 Species 13808 13813 Human
T40 Species 7922 7927 mouse
T41 CellLine 13814 13820 Caco-2
T42 CellType 10797 10813 mouse D3 ES cell
T43 GeneProtein 10404 10408 Msl1
T44 Species 11444 11449 mouse
T45 GeneProtein 5160 5190 sex-determining region Y-box 2
T46 CellLine 5904 5909 MCF-7
T47 GeneProtein 5154 5158 SOX2
T48 GeneProtein 5381 5386 GATA6
T49 CellLine 5324 5330 Caco-2
T50 CellType 5934 5944 MCF-7 cell
T51 CellLine 5934 5939 MCF-7
T52 GeneProtein 5929 5934 PODXL
T53 CellType 5904 5914 MCF-7 cell
T54 CellType 9327 9335 ES cells
T55 GeneProtein 9186 9191 GATA6
T56 CellType 5963 5975 NTERA-2 cell
T57 CellLine 5963 5970 NTERA-2
T58 Anatomy 1574 1583 Embryonic
T59 CellType 5642 5650 mouse ES
T60 CellType 5833 5835 ES
T61 Anatomy 9012 9022 endodermal
T62 GeneProtein 9049 9054 PDX-1
T63 Species 4754 4759 human
T64 GeneProtein 9918 9923 GATA6
T65 Species 9125 9130 human
T66 GeneProtein 12632 12642 E-Cadherin
T67 GeneProtein 2841 2846 Nanog
T68 GeneProtein 5143 5149 Oct3/4
T69 CellType 9125 9139 human ES cells
T70 CellType 974 984 stem cells
T71 Anatomy 14388 14396 colonies
T72 CellType 869 879 stem cells
T73 Species 5375 5380 human
T74 GeneProtein 8242 8247 Nanog
T75 CellType 14103 14111 ES cells
T76 Species 9912 9917 human
T77 GeneProtein 12644 12649 GATA1
T78 Species 14211 14216 human
T79 GeneProtein 9193 9198 PDX-1
T80 GeneProtein 7054 7057 CD9
T81 GeneProtein 3322 3327 Nanog
T82 GeneProtein 11582 11589 Oct 3/4
T83 GeneProtein 11497 11506 Brachyury
T84 Species 11756 11759 Rat
T85 Anatomy 10829 10834 fetal
T86 GeneProtein 11786 11791 PODXL
T87 GeneProtein 11743 11748 GATA1
T88 GeneProtein 11830 11834 SOX2
T89 Anatomy 10835 10845 endodermal
T90 CellType 9477 9498 mesodermal precursors
T91 GeneProtein 12724 12729 DPPA5
T92 GeneProtein 11804 11809 IgG2A
T93 Anatomy 9508 9511 EBs
T94 CellType 7374 7390 progenitor cells
T95 GeneProtein 12744 12749 GATA1
T96 Species 11103 11108 mouse
T97 GeneProtein 9517 9520 FGF
T98 GeneProtein 14318 14322 bFGF
T99 CellType 14008 14014 ES cel
T100 GeneProtein 12764 12769 GATA6
T101 Anatomy 9060 9068 mesoderm
T102 GeneProtein 7329 7333 SOX2
T103 Anatomy 9012 9020 endoderm
T104 GeneProtein 9371 9380 Brachyury
T105 GeneProtein 11756 11765 Rat IgG2B
T106 GeneProtein 11657 11668 Mouse IgG2B
T107 GeneProtein 9200 9209 Brachyury
T108 Anatomy 14362 14377 embryoid bodies
T109 Anatomy 14625 14635 aggregates
T110 Anatomy 15469 15472 EBs
T111 Species 4255 4260 human
T112 GeneProtein 14694 14698 bFGF
T113 Species 15783 15788 mouse
T114 Anatomy 4289 4292 EBs
T115 CellType 9159 9162 EBs
T116 Species 8965 8970 human
T117 CellType 3193 3197 ESCs
T118 GeneProtein 8407 8417 E-Cadherin
T119 CellType 2401 2403 ES
T120 GeneProtein 8432 8437 PODXL
T121 Species 1836 1841 human
T122 GeneProtein 11843 11854 Mouse IgG2A
T123 CellType 1809 1819 germ cells
T124 GeneProtein 8639 8642 FGF
T125 Anatomy 1619 1634 inner cell mass
T126 GeneProtein 12687 12691 SOX2
T127 Anatomy 9590 9593 EBs
T128 CellType 1574 1594 Embryonic stem cells
T129 CellType 8692 8700 ES cells
T130 Anatomy 1655 1662 embryos
T131 GeneProtein 12696 12701 SOX17
T132 CellType 8965 8979 human ES cells
T133 Species 11843 11848 Mouse
T134 CellType 3234 3244 germ cells
T135 Species 10823 10828 mouse
T136 CellType 14664 14666 ES
T137 CellType 13848 13862 mouse D3 cells
T138 Species 14002 14007 human
T139 GeneProtein 7222 7228 Oct3/4
T140 GeneProtein 12673 12678 PDX-1
T141 GeneProtein 7074 7079 PODXL
T142 GeneProtein 2082 2086 bFGF
T143 GeneProtein 2050 2080 basic fibroblast growth factor
T144 GeneProtein 13405 13414 Protein G
T145 Species 13644 13649 goats
T146 GeneProtein 11760 11765 IgG2B
T147 Species 10121 10126 human
T149 GeneProtein 7939 7943 SOX2
T150 CellType 6476 6479 EBs
T151 CellLine 10803 10805 D3
T152 CellLine 5934 5944 MCF-7 cell
T153 CellType 10776 10790 mouse ES cells
T154 CellType 497 516 embryonic stem cell
T155 Species 10797 10802 mouse
T156 GeneProtein 5789 5797 PDX1beta
T157 CellType 8714 8735 germ layer precursors
T158 GeneProtein 11623 11627 SOX1
T159 Species 10014 10019 human
T160 Species 13285 13296 BALB/c mice
T161 GeneProtein 2830 2836 Oct3/4
T162 GeneProtein 7059 7069 E-Cadherin
T163 GeneProtein 12665 12671 Oct3/4
T164 Species 13848 13853 mouse
T165 Species 14097 14102 human
T166 CellType 6759 6773 human ES cells
T167 Species 8348 8353 Human
T168 CellLine 13854 13856 D3
T169 Anatomy 7781 7784 EBs
T170 CellType 8310 8318 EB cells
T171 GeneProtein 8266 8270 SOX2
T172 Anatomy 8252 8255 EBs
T173 CellLine 5798 5807 TC 6 cell
T174 Anatomy 14379 14382 EBs
T175 CellType 8252 8255 EBs
T176 CellType 14385 14387 ES
T177 CellType 10782 10790 ES cells
T178 GeneProtein 12701 12710 Brachyury
T179 GeneProtein 5755 5760 Oct 3
T180 GeneProtein 9363 9368 GATA6
T181 CellType 8354 8373 embryonic stem cell
T182 GeneProtein 12804 12810 Oct3/4
T183 CellLine 5904 5914 MCF-7 cell
T184 Anatomy 7294 7297 EBs
T185 CellType 14432 14435 MEF
T186 GeneProtein 7464 7470 Oct3/4
T187 CellLine 5698 5708 Caco2 cell
T188 GeneProtein 12783 12788 Nanog
T189 Anatomy 7367 7373 neural
T190 Species 11711 11716 Mouse
T191 GeneProtein 11711 11722 Mouse IgG2B
T192 CellType 7733 7747 human ES cells
T193 GeneProtein 11689 11699 E-cadherin
T194 Species 4821 4826 human
T195 GeneProtein 5755 5762 Oct 3/4
T196 CellLine 5762 5769 NTERA-2
T197 CellType 5762 5774 NTERA-2 cell
T198 GeneProtein 5676 5681 DPPA5
T199 CellLine 4879 4884 MG-63
T200 CellType 9590 9593 EBs
T201 CellType 9488 9498 precursors
T202 Species 4810 4815 mouse
T203 GeneProtein 4827 4837 E-Cadherin
T204 CellType 9673 9676 EBs
T205 Species 13292 13296 mice
T206 GeneProtein 4842 4847 PODXL
T207 GeneProtein 4849 4865 podocalyxin-like
T208 CellLine 7629 7635 β-TC-6
T209 GeneProtein 7584 7587 CD9
T210 CellLine 5698 5703 Caco2
T211 CellComponent 8121 8128 nuclear
T212 CellLine 7559 7564 MCF-7
T213 GeneProtein 11663 11668 IgG2B
T214 GeneProtein 11623 11628 SOX17
T215 GeneProtein 11849 11854 IgG2A
T216 GeneProtein 11605 11610 PDX-1
T217 Species 4915 4920 mouse
T218 GeneProtein 11717 11722 IgG2B
T219 GeneProtein 11562 11567 Nanog
T220 CellType 9264 9272 ES cells
T221 Species 15622 15628 donkey
T222 CellType 10523 10525 ES
T223 Species 10675 10680 mouse
T224 CellLine 7629 7639 β-TC-6 cel
T225 GeneProtein 11642 11645 CD9
T226 CellType 7781 7784 EBs
T227 GeneProtein 9039 9044 GATA6
T228 CellComponent 4709 4718 platelets
T229 Species 7891 7896 human
T230 GeneProtein 7897 7903 Oct3/4
T231 GeneProtein 5723 5728 Nanog
T232 GeneProtein 9032 9037 SOX17
T233 GeneProtein 5789 5793 PDX1
T234 CellLine 5793 5802 beta-TC 6
T235 GeneProtein 2655 2661 Oct3/4
T236 CellType 2590 2605 pluripotent ESC
T237 CellType 1562 1572 stem cells
T238 GeneProtein 5861 5864 CD9
T239 CellType 5728 5740 NTERA-2 cell
T240 CellLine 5728 5735 NTERA-2
T241 CellType 4261 4269 ES cells
T242 GeneProtein 9355 9360 SOX17
T243 CellType 5827 5835 mouse ES
T244 CellType 2485 2495 human ESCs
T245 GeneProtein 2720 2725 Nanog
T246 CellType 2491 2495 ESCs
T247 Species 2485 2490 human
T248 GeneProtein 9080 9089 Brachyury
T249 CellLine 4774 4779 MCF-7
T250 CellType 7514 7526 NTERA-2 cell
T251 GeneProtein 9094 9099 GATA1
T252 CellComponent 6928 6949 extracellular epitope
T253 GeneProtein 7482 7487 Nanog
T254 GeneProtein 7541 7551 E-Cadherin
T255 Species 9258 9263 human
T256 Anatomy 9060 9070 mesodermal
T257 GeneProtein 7502 7506 SOX2
T258 CellType 9258 9272 human ES cells
T259 GeneProtein 9214 9219 GATA1
T260 CellType 5793 5807 beta-TC 6 cell
T261 GeneProtein 5822 5827 SOX17
T262 Anatomy 9462 9472 endodermal
T263 Anatomy 4692 4708 peripheral blood
T264 GeneProtein 4760 4763 CD9
T265 GeneProtein 12958 12963 PODXL
T266 Species 12982 12987 mouse
T267 GeneProtein 12946 12956 E-Cadherin
T268 CellType 4255 4269 human ES cells
T269 Species 6625 6630 human
T270 CellType 1939 1947 ES cells
T271 Species 1933 1938 human
T272 GeneProtein 2708 2714 Pou5f1
T273 CellType 1065 1075 stem cells
T274 Species 4686 4691 Human
T275 GeneProtein 9179 9184 SOX17
T276 Anatomy 9159 9162 EBs
T277 CellType 1207 1217 stem cells
T278 Anatomy 1346 1357 populations
T279 GeneProtein 12941 12944 CD9
T280 GeneProtein 6078 6084 GATA-1
T281 Species 16768 16773 mouse
T282 GeneProtein 12866 12871 SOX17
T283 Anatomy 15965 15968 EBs
T284 GeneProtein 12843 12847 SOX2
T285 CellType 5864 5868 PBMC
T286 GeneProtein 5876 5882 GATA-1
T287 GeneProtein 15802 15805 IgG
T288 Species 1984 1989 mouse
T289 CellType 2129 2143 human ES cells
T290 Species 2129 2134 human
T291 CellType 2135 2143 ES cells
T292 GeneProtein 3043 3056 human Oct 3/4
T293 GeneProtein 2663 2706 POU domain, class 5, transcription factor 1
T294 CellType 1122 1138 progenitor cells
T295 CellType 1990 2000 fibroblast
T296 CellType 1922 1931 mouse ESC
T297 CellType 1933 1947 human ES cells
T298 CellType 1984 2000 mouse fibroblast
T299 CellType 14483 14485 ES
T300 Species 5452 5457 human
T301 GeneProtein 12824 12829 PDX-1
T302 GeneProtein 5894 5904 E-Cadherin
T303 CellType 14436 14448 feeder cells
T304 CellLine 5400 5407 NTERA-2
T305 CellType 5698 5708 Caco2 cell
T306 GeneProtein 4939 4961 GATA binding protein 1
T307 GeneProtein 11543 11548 GATA6
T308 CellType 10681 10683 ES
T309 Species 4926 4931 human
T310 GeneProtein 11520 11525 DPPA5
T311 GeneProtein 10535 10540 G3PDH
T312 Species 491 496 human
T313 CellType 491 516 human embryonic stem cell
T314 Species 1922 1927 mouse
T315 Anatomy 1886 1895 embryonic
T316 CellType 1880 1907 extra-embryonic derivatives
T317 GeneProtein 5992 5997 DPPA5
T318 Species 5137 5142 human
T319 GeneProtein 5693 5698 GATA6
T320 GeneProtein 4932 4937 GATA1
T321 Species 13244 13249 mouse
T322 Anatomy 13244 13257 mouse myeloma
T323 Species 6442 6447 human
T324 CellType 6448 6456 ES cells
T325 Anatomy 6476 6479 EBs
T326 CellType 12982 12997 mouse NSO cells
T327 GeneProtein 16774 16777 IgG
T328 CellType 11400 11402 ES
T329 CellComponent 7105 7126 extracellular epitope
T330 CellLine 7514 7521 NTERA-2
T331 Species 5126 5131 mouse
T332 Species 11198 11203 human
T333 Species 5642 5647 mouse
T334 GeneProtein 11147 11152 Nanog
T335 Species 11084 11089 mouse
T336 GeneProtein 11168 11173 PODXL
T337 Species 11157 11162 mouse
T338 CellType 12988 12997 NSO cells
T339 CellType 6631 6639 ES cells
T340 Species 5473 5478 human
T341 GeneProtein 5458 5463 Nanog
T342 GeneProtein 5479 5485 Oct3/4
T343 GeneProtein 10893 10899 Oct3/4
T344 GeneProtein 6563 6573 E-Cadherin
T345 Species 7974 7979 human
T346 Species 10874 10879 mouse
T347 GeneProtein 6557 6561 SOX2
T348 GeneProtein 6585 6590 Nanog
T349 GeneProtein 11798 11809 Mouse IgG2A
T350 GeneProtein 7980 7990 E-Cadherin
T351 Anatomy 10388 10396 ectoderm
T352 GeneProtein 10379 10383 MSX1
T353 GeneProtein 10343 10346 AFP
T354 CellComponent 10061 10068 nuclear
T355 CellType 10292 10307 germ layer cell
T356 GeneProtein 8231 8236 PODXL
T357 Species 8009 8014 mouse
T358 Species 11657 11662 Mouse
T359 Species 8020 8025 human
T360 CellType 7739 7747 ES cells
T361 Species 7733 7738 human
T362 CellType 7367 7390 neural progenitor cells
T363 GeneProtein 8219 8229 E-Cadherin
T364 Species 10776 10781 mouse
T365 CellType 10675 10683 mouse ES
T366 Anatomy 9477 9487 mesodermal
T367 GeneProtein 8211 8217 Oct3/4
T368 GeneProtein 10372 10377 Hand1
T369 GeneProtein 12620 12625 DPPA5
T370 GeneProtein 9386 9391 GATA1
T371 GeneProtein 7242 7247 PODXL
T372 GeneProtein 7252 7257 Nanog
T373 GeneProtein 12627 12630 CD9
T374 GeneProtein 12609 12618 Brachyury
T375 GeneProtein 8393 8396 CD9
T376 Anatomy 9673 9676 EBs
T377 CellType 8348 8374 Human embryonic stem cells
T378 Anatomy 8354 8363 embryonic
T379 Anatomy 10355 10363 mesoderm
T380 CellComponent 9955 9962 nuclear
T381 GeneProtein 7583 7587 hCD9
T382 Anatomy 10326 10334 endoderm
T383 CellType 7559 7569 MCF-7 cell
T384 CellType 7629 7640 β-TC-6 cell
T385 GeneProtein 6549 6555 Oct3/4
T386 GeneProtein 7617 7622 PDX-1
T387 CellLine 13836 13843 NTERA-2
T388 CellType 7595 7599 PBMC
T389 GeneProtein 9556 9561 PDX-1
T390 Anatomy 14486 14493 culture
T391 GeneProtein 12680 12685 PODXL
T392 CellComponent 9852 9859 nuclear
T393 CellType 6765 6773 ES cells
T394 CellType 14217 14219 ES
T395 Species 6759 6764 human
T396 CellLine 14021 14026 HSF-6
T397 GeneProtein 7230 7240 E-Cadherin
T398 CellLine 14037 14041 UC06
T399 GeneProtein 10127 10132 GATA1
T400 CellType 10186 10194 EB cells
T401 CellLine 13829 13834 MCF-7
T402 CellLine 13822 13827 MG-63
T403 Anatomy 10292 10302 germ layer
T404 GeneProtein 10348 10353 FoxA2
T405 Species 11798 11803 Mouse
T406 Species 14611 14616 human
T407 GeneProtein 6575 6580 PODXL
T408 GeneProtein 6662 6667 DPPA5
T409 CellType 6442 6456 human ES cells
T410 CellType 5648 5650 ES
T411 GeneProtein 6669 6708 developmental pluripotency associated 5
T412 GeneProtein 5633 5642 Brachyury
T413 Species 8066 8071 human
T414 GeneProtein 8026 8031 PODXL
T415 GeneProtein 8072 8077 Nanog