Create README.md

README.md

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+# For reference on dataset card metadata, see the spec: https://github.com/huggingface/hub-docs/blob/main/datasetcard.md?plain=1
+# Doc / guide: https://huggingface.co/docs/hub/datasets-cards
+{}
+---
+
+# Dataset Card for filtered & cleaned cellfinder data
+
+<!-- Provide a quick summary of the dataset. -->
+
+This data is the final clean/filter of the cellfinder data used for model training in our OTAR3088 project.
+
+### Dataset Description
+
+<!-- Provide a longer summary of what this dataset is. -->
+Cellfinder annotated texts, sourced from https://www.informatik.hu-berlin.de/de/forschung/gebiete/wbi/resources/cellfinder/
+
+Filters applied: 
+  - Removal of "_Anatomy_" entities which are not fit for our use of "_Anatomy_" terms as "_Tissue_" equivalents
+  - Resolution of cases where a term is given multiple labels in data sets, resolved by choosing the mode label / failing that a list of priorities is used for the entity label that is given
+  - Drop entries of annotations which are outside of the entity types we care for, which are: "_CellType_", "_CellLine_" and "_Anatomy_"~Tissue
+
+
+### Dataset info
+
+- **Curated by:** Christine Withers
+- **Funded by [optional]:** Open Targets
+- **Shared by [optional]:** [More Information Needed]
+- **Language(s) (NLP):** English
+- **License:** [More Information Needed]
+
+### Dataset Sources [optional]
+
+<!-- Provide the basic links for the dataset. -->
+
+- **Source:** (https://www.informatik.hu-berlin.de/de/forschung/gebiete/wbi/resources/cellfinder/)
+- **Paper:** https://pubmed.ncbi.nlm.nih.gov/24304896/
+
+## Dataset Structure
+
+<!-- This section provides a description of the dataset fields, and additional information about the dataset structure such as criteria used to create the splits, relationships between data points, etc. -->
+
+BRAT