# -- coding: utf-8 -- import h5py import scipy import scipy.io as io import numpy as np import os import glob from matplotlib import pyplot as plt from scipy import spatial, ndimage from multiprocessing import Pool from functools import partial import time import json def gaussian_filter_density(gt): density = np.zeros(gt.shape, dtype=np.float32) gt_count = np.count_nonzero(gt) if gt_count == 0: return density pts = np.array(list(zip(np.nonzero(gt)[1], np.nonzero(gt)[0]))) leafsize = 2048 # build kdtree tree = spatial.KDTree(pts.copy(), leafsize=leafsize) # query kdtree distances, locations = tree.query(pts, k=4) for i, pt in enumerate(pts): pt2d = np.zeros(gt.shape, dtype=np.float32) pt2d[pt[1], pt[0]] = 1.0 if gt_count > 1: sigma = (distances[i][1] + distances[i][2] + distances[i][3]) * 0.1 else: sigma = np.average(np.array(gt.shape)) / 2.0 / 2.0 # case: 1 point sigma = 6 density += scipy.ndimage.filters.gaussian_filter(pt2d, sigma, mode="constant") return density def process(idx, img_paths): start = time.time() img_path = img_paths[idx] mat_path = ( img_path.replace(".jpg", ".mat") .replace("images", "ground_truth") .replace("img", "GT_img") ) mat = io.loadmat(mat_path) img = plt.imread(img_path) k = np.zeros((int(img.shape[0] / 2), int(img.shape[1] / 2))) gt = mat["locations"] for i in range(0, len(gt)): if ( int(gt[i][1] / 2) < img.shape[0] / 2 and int(gt[i][0] / 2) < img.shape[1] / 2 ): k[int(gt[i][1] / 2), int(gt[i][0] / 2)] = 1 k = gaussian_filter_density(k) with h5py.File(mat_path.replace("mat", "h5"), "w") as hf: hf["density"] = k end = time.time() print(idx, len(img_paths), img_path, str(end - start) + "s") if __name__ == "__main__": img_paths = [] data_path = "." for img_path in glob.glob(os.path.join(data_path, "*/images", "*.jpg")): h5_path = ( img_path.replace(".jpg", ".h5") .replace("images", "ground_truth") .replace("img", "GT_img") ) if not os.path.exists(h5_path): img_paths.append(img_path) img_paths.sort() print(img_paths) print(len(img_paths)) pool = Pool(10) partial = partial(process, img_paths=img_paths) _ = pool.map(partial, range(len(img_paths)))