lagrangian / onescience_run_manifest.yaml
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onescience_manifest_version: "0.1"
resource_type: dataset
resource:
id: OneScience/lagrangian
name: lagrangian
domain: cfd
domain_tags: [cfd, particle_simulation, lagrangian_dynamics]
task: lagrangian_particle_simulation_dataset
task_tags: [train_data, eval_data, inference_input, dataset_validation]
modalities: [particle_trajectory]
input_formats: [tfrecord]
output_formats: [tfrecord]
summary: DeepMind Lagrangian Water 子数据集标准数据包,包含 train、valid、test 三个 TFRecord split metadata.json。
platform_resource:
primary:
platform: modelscope
repo_id: OneScience/lagrangian
repo_type: dataset
url: https://modelscope.cn/datasets/OneScience/lagrangian
revision: main
readme_path: README.md
manifest_path: onescience_run_manifest.yaml
mirrors: []
access:
visibility: public
license: unknown
website_integration:
enabled: true
click_target:
platform: modelscope
resource_url: https://modelscope.cn/datasets/OneScience/lagrangian
llm_handoff:
readme_required: true
manifest_required: true
download_readme_first: true
resolve_related_models: true
default_run_goal: dataset_validation
cwd_note: 如果使用 modelscope download --cache_dir 下载数据集,请先 cd 到实际下载后的数据集仓库根目录;模型侧将 ONESCIENCE_LAGRANGIAN_DATA_DIR 指向本仓库 data/Water。
runtime:
enabled: true
onescience_domain: cfd
min_onescience_version: null
supported_execution: [local_dataset_validation, model_training_input, model_inference_input]
environment:
exported_env:
ONESCIENCE_LAGRANGIAN_DATA_DIR: <dataset_repo_root>/data/Water
dependencies:
python: ">=3.10"
python_packages: [tensorflow, numpy, pyyaml]
onescience:
repo: https://gitee.com/onescience-ai/onescience
official_links:
gitee:
doc: https://gitee.com/onescience-ai/onescience-doc
onescience: https://gitee.com/onescience-ai/onescience
skills: https://gitee.com/onescience-ai/oneskills
github:
doc: https://github.com/onescience-ai/OneScience-doc
onescience: https://github.com/onescience-ai/OneScience
skills: https://github.com/onescience-ai/oneskills
install:
required_by_default: false
command: bash install.sh cfd
source_paths:
- onescience/src/onescience/datapipes/cfd/deepmind_lagrangian.py
compatibility:
examples_path: onescience/examples/cfd/Lagrangian_MGN
status: examples_compatible
datapipe: onescience.datapipes.cfd.DeepMindLagrangianDatapipe
runtime_package:
kind: standard_runtime_package
package_root: .
standard_layout:
workdir: .
data_dir: data/Water
metadata_dir: metadata
output_dir: validation_outputs
apply_policy:
mode: direct_use
target: session_workdir
overwrite: false
protect_installed_onescience: true
entry_files:
- data/Water/metadata.json
- data/Water/train.tfrecord
- data/Water/valid.tfrecord
- data/Water/test.tfrecord
- metadata/lagrangian_water_schema.json
- scripts/validate_lagrangian_dataset.py
- files_sha256.jsonl
entrypoints:
preflight: scripts/validate_lagrangian_dataset.py
validate: scripts/validate_lagrangian_dataset.py
inference: null
train: null
finetune: null
evaluate: null
visualize: null
deploy: null
files:
model_files: []
dataset_files:
- id: water_tfrecord_splits
path: data/Water/*.tfrecord
role: train_eval_inference_data
description_zh: Water 子数据集的 train、valid、test TFRecord 序列文件。
required: true
required_for: [dataset_validation, train, inference, evaluate]
source: {platform: modelscope, repo_id: OneScience/lagrangian, repo_type: dataset, download_method: command_ref, command_ref: commands.download.download_dataset}
local_path: data/Water
- id: water_metadata
path: data/Water/metadata.json
role: schema_and_normalization_stats
description_zh: Water 数据的维度、时间步长、边界、半径、速度和加速度归一化统计。
required: true
required_for: [dataset_validation, train, inference, evaluate]
source: {platform: modelscope, repo_id: OneScience/lagrangian, repo_type: dataset, download_method: command_ref, command_ref: commands.download.download_dataset}
local_path: data/Water/metadata.json
- id: integrity_inventory
path: files_sha256.jsonl
role: file_size_sha256_inventory
description_zh: 整理后数据文件大小和 SHA256 清单。
required: true
required_for: [dataset_validation]
source: {platform: modelscope, repo_id: OneScience/lagrangian, repo_type: dataset, download_method: command_ref, command_ref: commands.download.download_dataset}
local_path: files_sha256.jsonl
- id: integrity_summary
path: data_integrity_summary.json
role: source_to_standardized_integrity_summary
description_zh: 原始数据与整理后数据的文件名、大小、SHA256 对照摘要。
required: true
required_for: [dataset_validation]
source: {platform: modelscope, repo_id: OneScience/lagrangian, repo_type: dataset, download_method: command_ref, command_ref: commands.download.download_dataset}
local_path: data_integrity_summary.json
config_files:
- id: schema
path: metadata/lagrangian_water_schema.json
role: dataset_schema
description_zh: TFRecord SequenceExample 字段、dtype、shape split 数量说明。
required: true
required_for: [dataset_validation, train, inference]
source: {platform: modelscope, repo_id: OneScience/lagrangian, repo_type: dataset, download_method: command_ref, command_ref: commands.download.download_dataset}
local_path: metadata/lagrangian_water_schema.json
sample_files:
- id: validation_script
path: scripts/validate_lagrangian_dataset.py
role: dataset_validation
description_zh: 检查数据文件结构、metadata、TFRecord 首条样本 shape/dtype 和可选 SHA256。
required: true
required_for: [dataset_validation]
source: {platform: modelscope, repo_id: OneScience/lagrangian, repo_type: dataset, download_method: command_ref, command_ref: commands.download.download_dataset}
local_path: scripts/validate_lagrangian_dataset.py
dataset:
format: [tfrecord_sequence_example]
sample_unit: 一个 SequenceExample 对应一条粒子仿真序列。
schema:
path: metadata/lagrangian_water_schema.json
splits:
train: {path: data/Water/train.tfrecord, expected_sequences: 1000}
validation: {path: data/Water/valid.tfrecord, expected_sequences: 30}
test: {path: data/Water/test.tfrecord, expected_sequences: 30}
metadata:
path: data/Water/metadata.json
dim: 2
sequence_length: 1000
dt: 0.0025
default_connectivity_radius: 0.015
normalization_stats: [vel_mean, vel_std, acc_mean, acc_std]
relations:
required_datasets: []
optional_datasets: []
compatible_models:
- id: OneScience/LagrangianMGN
role: train_data
required_for: [preflight, train, inference, evaluate, visualize]
resource_ref:
platform: modelscope
repo_id: OneScience/LagrangianMGN
repo_type: model
url: https://modelscope.cn/models/OneScience/LagrangianMGN
revision: main
readme_path: README.md
manifest_path: onescience_run_manifest.yaml
expected_local_path: data/Water
adapter: null
run_matrix:
scenarios:
- name: dataset_validation
default: true
capability: preflight
description: 验证 Water TFRecord 数据、metadata schema、文件清单和可读性。
required_datasets:
- id: OneScience/lagrangian
role: dataset_validation
local_path: .
required_model_files: []
required_dataset_files: [data/Water/metadata.json, data/Water/train.tfrecord, data/Water/valid.tfrecord, data/Water/test.tfrecord, files_sha256.jsonl]
preconditions:
- 已下载 OneScience/lagrangian 数据集仓库并 cd 到数据集仓库根目录。
command_refs: [commands.preflight.validate_dataset]
expected_outputs: [dataset_validation_ok]
capabilities:
inference: false
train: false
finetune: false
evaluate: false
visualize: false
deploy: false
dataset_validation: true
commands:
download:
- name: download_dataset
target: dataset
repo_id: OneScience/lagrangian
local_path: <session_workdir>/lagrangian
required: true
required_for: [dataset_validation, train, inference, evaluate]
command: modelscope download --dataset OneScience/lagrangian
preflight:
- name: validate_dataset
description: 验证 Water 数据集文件结构、metadata、TFRecord 首条样本和清单。
cwd: .
command: python scripts/validate_lagrangian_dataset.py --dataset-root .
required_files: [scripts/validate_lagrangian_dataset.py, data/Water/metadata.json, data/Water/train.tfrecord, data/Water/valid.tfrecord, data/Water/test.tfrecord, files_sha256.jsonl]
required_env: []
expected_outputs: [{path: stdout, type: text, contains: "Lagrangian Water dataset validation passed"}]
success_criteria: [exit_code == 0]
prepare: []
inference: []
train: []
finetune: []
evaluate: []
visualize: []
deploy: []
expected_outputs:
- id: dataset_validation_ok
path: stdout
type: text
description_zh: 数据集验证输出 Lagrangian Water dataset validation passed。
diagnostics:
- symptom: "missing TFRecord split"
cause: 数据集下载不完整或当前目录不是数据集仓库根目录。
fix: 重新执行 modelscope download --dataset OneScience/lagrangian,并 cd 到下载后的数据集根目录。
- symptom: "metadata dim or sequence_length mismatch"
cause: 使用了非 Water 或非本标准包的数据目录。
fix: 确认 ONESCIENCE_LAGRANGIAN_DATA_DIR 指向 OneScience/lagrangian data/Water。
- symptom: "TensorFlow first-record check skipped"
cause: 当前环境缺少 TensorFlow。
fix: 安装 TensorFlow 后重跑验证;文件大小和 SHA256 仍可先用于完整性判断。
domain_extension:
cfd:
dataset_family: DeepMind Learning to Simulate
subset: Water
simulation_type: lagrangian_particle_dynamics
dimensionality: 2
splits: [train, valid, test]