#!/usr/bin/env python3 """Validate the standardized DeepMind Lagrangian Water dataset package.""" from __future__ import annotations import argparse import hashlib import json from pathlib import Path EXPECTED_SPLITS = { "train": 1000, "valid": 30, "test": 30, } def fail(message: str) -> None: raise SystemExit(f"[FAIL] {message}") def sha256_file(path: Path) -> str: digest = hashlib.sha256() with path.open("rb") as f: for chunk in iter(lambda: f.read(1024 * 1024), b""): digest.update(chunk) return digest.hexdigest() def parse_args() -> argparse.Namespace: parser = argparse.ArgumentParser() parser.add_argument("--dataset-root", default=".", help="dataset package root") parser.add_argument( "--verify-sha256", action="store_true", help="recompute and verify SHA256 values from files_sha256.jsonl", ) parser.add_argument( "--skip-tfrecord-read", action="store_true", help="skip optional TensorFlow first-record readability check", ) return parser.parse_args() def load_metadata(data_dir: Path) -> dict: meta_path = data_dir / "metadata.json" if not meta_path.is_file(): fail(f"missing metadata file: {meta_path}") metadata = json.loads(meta_path.read_text(encoding="utf-8")) if metadata.get("dim") != 2: fail(f"expected metadata dim=2, got {metadata.get('dim')}") if metadata.get("sequence_length") != 1000: fail(f"expected sequence_length=1000, got {metadata.get('sequence_length')}") for key in ["vel_mean", "vel_std", "acc_mean", "acc_std"]: value = metadata.get(key) if not isinstance(value, list) or len(value) != 2: fail(f"metadata {key} must be a length-2 list") return metadata def check_files(dataset_root: Path) -> dict: data_dir = dataset_root / "data" / "Water" if not data_dir.is_dir(): fail(f"missing data directory: {data_dir}") sizes = {} for split in EXPECTED_SPLITS: path = data_dir / f"{split}.tfrecord" if not path.is_file(): fail(f"missing TFRecord split: {path}") size = path.stat().st_size if size <= 0: fail(f"empty TFRecord split: {path}") sizes[str(path.relative_to(dataset_root))] = size if not (data_dir / "metadata.json").is_file(): fail("missing data/Water/metadata.json") sizes["data/Water/metadata.json"] = (data_dir / "metadata.json").stat().st_size return sizes def verify_inventory(dataset_root: Path, sizes: dict, verify_sha256: bool) -> None: inventory_path = dataset_root / "files_sha256.jsonl" if not inventory_path.is_file(): fail("missing files_sha256.jsonl") seen = {} for line in inventory_path.read_text(encoding="utf-8").splitlines(): if not line.strip(): continue item = json.loads(line) rel_path = item["path"] path = dataset_root / rel_path if not path.is_file(): fail(f"inventory path missing on disk: {rel_path}") if path.stat().st_size != item["size"]: fail(f"size mismatch for {rel_path}") if sizes.get(rel_path) != item["size"]: fail(f"required file size mismatch for {rel_path}") if verify_sha256: actual = sha256_file(path) if actual != item["sha256"]: fail(f"sha256 mismatch for {rel_path}") seen[rel_path] = item missing = sorted(set(sizes) - set(seen)) if missing: fail(f"inventory missing required files: {missing}") def check_tfrecord_first_record(data_dir: Path, metadata: dict) -> None: try: import numpy as np import tensorflow.compat.v1 as tf except Exception as exc: # pragma: no cover - depends on runtime env print(f"[WARN] TensorFlow first-record check skipped: {exc}") return feature_description = {"position": tf.io.VarLenFeature(tf.string)} context_features = { "key": tf.io.FixedLenFeature([], tf.int64, default_value=0), "particle_type": tf.io.VarLenFeature(tf.string), } expected_steps = metadata["sequence_length"] + 1 dim = metadata["dim"] for split in EXPECTED_SPLITS: record_iter = iter(tf.data.TFRecordDataset(str(data_dir / f"{split}.tfrecord")).take(1)) try: raw = next(record_iter) except StopIteration: fail(f"{split}.tfrecord contains no records") context, features = tf.io.parse_single_sequence_example( raw, context_features=context_features, sequence_features=feature_description, ) position = np.frombuffer(features["position"].values[0].numpy(), dtype=np.float32) if position.size % (expected_steps * dim) != 0: fail(f"{split}.tfrecord first record position shape is incompatible with metadata") particle_type = np.frombuffer(context["particle_type"].values[0].numpy(), dtype=np.int64) num_particles = position.size // (expected_steps * dim) if particle_type.shape[0] != num_particles: fail(f"{split}.tfrecord particle_type length does not match position particles") print( f"[OK] {split}.tfrecord first record: " f"position_shape=({expected_steps}, {num_particles}, {dim}), " "position_dtype=float32, particle_type_dtype=int64" ) def main() -> None: args = parse_args() dataset_root = Path(args.dataset_root).resolve() data_dir = dataset_root / "data" / "Water" sizes = check_files(dataset_root) metadata = load_metadata(data_dir) verify_inventory(dataset_root, sizes, args.verify_sha256) if not args.skip_tfrecord_read: check_tfrecord_first_record(data_dir, metadata) print("[OK] Lagrangian Water dataset validation passed") if __name__ == "__main__": main()