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README.md
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@@ -26,24 +26,30 @@ This repository contains test data for CauScale, a neural architecture for causa
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## Data Format
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- `data_interv{i}.npy` — concatenated observational and interventional data `(N, d)`
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- `intervention{i}.csv` — intervened node index per row (empty = observational)
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- `regime{i}.csv` — environment index per row (0 = observational, 1..K = interventional)
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Generated using linear, neural network, and polynomial structural equation models on Erdős–Rényi (ER) and Scale-Free (SF) graphs.
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- **Test**: 10–1000 nodes graph-sizes, 5 DAGs each, 1000 data points per DAG
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### SERGIO Gene Expression Data
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Simulated single-cell gene expression data using the [SERGIO simulator](https://github.com/PayamDiba/SERGIO).
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## Usage
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## Data Format
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### Synthetic Data
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Generated using linear, neural network, and polynomial structural equation models on Erdős–Rényi (ER) and Scale-Free (SF) graphs.
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Each instance folder contains:
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- `DAG{i}.npy` — ground-truth adjacency matrix `(d, d)`, boolean, entry `(i, j) = True` means i → j
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- `data_interv{i}.npy` — concatenated observational and interventional data `(N, d)`
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- `intervention{i}.csv` — intervened node index per row (empty = observational)
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- `regime{i}.csv` — environment index per row (0 = observational, 1..K = interventional)
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**Test**: 10–1000 nodes, 5 DAGs each, 1000 data points per DAG
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### SERGIO Gene Expression Data
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Simulated single-cell gene expression data using the [SERGIO simulator](https://github.com/PayamDiba/SERGIO).
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Each instance folder contains:
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- `DAG.npy` — ground-truth adjacency matrix `(d, d)`, boolean
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- `data_intv.npy` — interventional data `(N_int, d)`
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- `intv.npy` — intervention mask `(N_int, d)`, boolean
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- `data.npy` / `clean.npy` / `dropout.npy` — observational data variants `(150, d)`
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- `info.json` — metadata
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**Test**: Nodes 100–200, ER graphs, expected degrees 2 and 4, 5 graphs each, 20000 interventional points
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## Usage
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