Datasets:
Consistent README with dataset card
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README.md
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---
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license: cc-by-4.0
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task_categories:
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- tabular-regression
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- tabular-classification
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tags:
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- gwas
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- summary-statistics
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- psychiatric-genomics
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- pgc
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- adhd
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- mental-health
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- genetics
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- genomics
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pretty_name:
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size_categories:
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- 1M-10M
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configs:
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- config_name: adhd2010
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- config_name: adhd2018_SexSpecific
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- config_name: adhd2019
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- config_name: adhd2022
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---
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# PGC Attention Deficit Hyperactivity Disorder — GWAS Summary Statistics
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Genome-wide association study (GWAS) summary statistics for **Attention Deficit Hyperactivity Disorder** phenotypes from the [Psychiatric Genomics Consortium (PGC)](https://pgc.unc.edu/).
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## Usage
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```python
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from datasets import load_dataset
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# Load a specific GWAS
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ds = load_dataset("OpenMed/pgc-adhd", "adhd2010")
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print(ds)
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```
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###
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```python
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from datasets import get_dataset_config_names
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print(configs)
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```
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## Subsets
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| Config | Phenotype | Journal | Year | PubMed | Rows |
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|--------|-----------|---------|------|--------|------|
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| `adhd2010` | ADHD | JAACAP | 2010 | [20732625](https://pubmed.ncbi.nlm.nih.gov/20732625/) | — |
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| `adhd2018_SexSpecific` | ADHD (Sex-Specific) | Biological Psychiatry | 2018 | [29325848](https://pubmed.ncbi.nlm.nih.gov/29325848/) |
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| `adhd2019` | ADHD | Nature Genetics | 2019 | [30478444](https://pubmed.ncbi.nlm.nih.gov/30478444/) |
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| `adhd2022` | ADHD | Nature Genetics | 2022 | [36702997](https://pubmed.ncbi.nlm.nih.gov/36702997/) | — |
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## Data Format
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All data
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| Column | Description |
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|--------|-------------|
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| `SNP` / `ID` | SNP rsID or variant identifier |
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| `CHR` | Chromosome |
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| `BP` / `POS` | Base-pair position (typically GRCh37/hg19) |
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| `A1`
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| `A2`
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| `OR` / `BETA` | Odds ratio or effect size |
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| `SE` | Standard error |
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| `P` | P-value |
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| `INFO` | Imputation quality score |
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| `FRQ` / `MAF` | Allele frequency |
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| `_source_file` | Original source filename |
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>
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## Citation
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2. The **data DOI** from Figshare (see supplementary metadata)
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3. **Acknowledge the PGC:**
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> "Data were obtained from the Psychiatric Genomics Consortium — https://pgc.unc.edu/"
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## Terms of Use
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2. Not attempt to re-identify individual participants
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3. Comply with the PGC's [data use policies](https://pgc.unc.edu/for-researchers/data-access/)
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## Source
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---
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license: cc-by-4.0
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task_categories:
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+
- tabular-regression
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+
- tabular-classification
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tags:
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- gwas
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- summary-statistics
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- psychiatric-genomics
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+
- pgc
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- adhd
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- mental-health
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- genetics
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- genomics
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pretty_name: >-
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PGC Attention Deficit Hyperactivity Disorder GWAS Summary Statistics
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size_categories:
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- 1M-10M
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configs:
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- config_name: adhd2010
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default: true
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data_files:
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- split: train
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path: data/adhd2010/*.parquet
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- config_name: adhd2018_SexSpecific
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data_files:
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- split: train
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path: data/adhd2018_SexSpecific/*.parquet
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- config_name: adhd2019
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data_files:
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- split: train
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path: data/adhd2019/*.parquet
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- config_name: adhd2022
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data_files:
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- split: train
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path: data/adhd2022/*.parquet
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---
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# PGC Attention Deficit Hyperactivity Disorder — GWAS Summary Statistics
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Genome-wide association study (GWAS) summary statistics for **Attention Deficit Hyperactivity Disorder** phenotypes from the [Psychiatric Genomics Consortium (PGC)](https://pgc.unc.edu/).
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Each publication is available as a separate subset (config) and can be loaded independently.
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## Usage
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```python
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from datasets import load_dataset
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# Load a specific GWAS
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ds = load_dataset("OpenMed/pgc-adhd", "adhd2010")
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print(ds)
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```
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### List all available subsets
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```python
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from datasets import get_dataset_config_names
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print(get_dataset_config_names("OpenMed/pgc-adhd"))
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```
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## Subsets
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| Config | Phenotype | Journal | Year | PubMed | Rows |
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|--------|-----------|---------|------|--------|------|
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| `adhd2010` | ADHD | JAACAP | 2010 | [20732625](https://pubmed.ncbi.nlm.nih.gov/20732625/) | — |
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| `adhd2018_SexSpecific` | ADHD (Sex-Specific) | Biological Psychiatry | 2018 | [29325848](https://pubmed.ncbi.nlm.nih.gov/29325848/) | — |
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| `adhd2019` | ADHD | Nature Genetics | 2019 | [30478444](https://pubmed.ncbi.nlm.nih.gov/30478444/) | — |
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| `adhd2022` | ADHD | Nature Genetics | 2022 | [36702997](https://pubmed.ncbi.nlm.nih.gov/36702997/) | — |
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## Data Format
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All data is stored as **Apache Parquet** shards (10,000 rows each). Common columns:
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| Column | Description |
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|--------|-------------|
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| `SNP` / `ID` | SNP rsID or variant identifier |
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| `CHR` | Chromosome |
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| `BP` / `POS` | Base-pair position (typically GRCh37/hg19) |
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| `A1` | Effect allele |
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| `A2` | Non-effect allele |
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| `OR` / `BETA` | Odds ratio or effect size |
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| `SE` | Standard error |
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| `P` | P-value |
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| `_source_file` | Original source filename |
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> Column names vary between publications. Check each subset's schema.
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## Citation
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Please cite the original publication (see PubMed links above) and acknowledge the PGC:
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> Data were obtained from the Psychiatric Genomics Consortium — https://pgc.unc.edu/
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## Terms of Use
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Released under **[CC BY 4.0](https://creativecommons.org/licenses/by/4.0/)**.
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- Cite the original publication(s)
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- Do not attempt to re-identify individual participants
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- Comply with the PGC [data use policies](https://pgc.unc.edu/for-researchers/data-access/)
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## Source
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- [Psychiatric Genomics Consortium (PGC)](https://pgc.unc.edu/)
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- [PGC Downloads](https://pgc.unc.edu/for-researchers/download-results/)
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