opsecsystems commited on
Commit
1d17291
·
verified ·
1 Parent(s): ada2c14

Scripts of 2026-09-27: 2 new block(s), 545 manifest(s), 0 removed

Browse files
This view is limited to 50 files because it contains too many changes.   See raw diff
Files changed (50) hide show
  1. README.md +22 -17
  2. blocks/00003.parquet +3 -0
  3. blocks/00004.parquet +3 -0
  4. manifests/00/github.com__mychan24__system-segregation-and-graph-tools.json +183 -0
  5. manifests/00/github.com__nwharbert8-ui__eif2s1-translational-qc-hubsub.json +129 -0
  6. manifests/01/github.com__datax-jiehao__minet.json +93 -0
  7. manifests/02/github.com__haozhaozhe__fm_v1.json +84 -0
  8. manifests/02/github.com__villeneuvelab__vlpp.json +345 -0
  9. manifests/03/github.com__gnacode__mdpi-montecarlo.json +57 -0
  10. manifests/03/github.com__palombom__sandi-matlab-toolbox-latest-release.json +822 -0
  11. manifests/04/github.com__lbcb-sci__rinalmo.json +363 -0
  12. manifests/04/github.com__lynnsoerensen__objecttraining_it_anns.json +237 -0
  13. manifests/04/github.com__neuropsyol__senda.json +1965 -0
  14. manifests/04/github.com__oliviakowalczyk__spain_squeeze.json +282 -0
  15. manifests/05/github.com__shadou__kc_lifestyle_ml_classifier.json +39 -0
  16. manifests/05/zenodo__20839352.json +57 -0
  17. manifests/08/zenodo__22227732.json +120 -0
  18. manifests/09/github.com__nkicsl__ddr-dataset.json +30 -0
  19. manifests/09/github.com__rowanz__grover.json +192 -0
  20. manifests/09/github.com__yikunpku__rna-msm.json +462 -0
  21. manifests/09/zenodo__19731482.json +57 -0
  22. manifests/09/zenodo__20118606.json +930 -0
  23. manifests/0b/github.com__dawnfinzi__spacestream.json +660 -0
  24. manifests/0b/github.com__piercelab__tcrmodel2.json +867 -0
  25. manifests/0b/github.com__tomori233__monkeynovelty.json +660 -0
  26. manifests/0c/github.com__abdulhamidbatayhi123__kan-ftir-food-adulteration.json +516 -0
  27. manifests/0c/github.com__dahuilangda__mirror-peptidizer.json +372 -0
  28. manifests/0c/github.com__nsblab__braineigenmodes.json +2658 -0
  29. manifests/0c/github.com__piskvorky__gensim-data.json +48 -0
  30. manifests/0c/zenodo__20314327.json +975 -0
  31. manifests/0e/github.com__astrogewgaw__powerlawnoise.jl.json +48 -0
  32. manifests/0e/github.com__codyheadings__acmt.json +138 -0
  33. manifests/0e/github.com__han-yy__neuralmarkerpain.json +444 -0
  34. manifests/0f/github.com__husonlab__mulan-methyl.json +66 -0
  35. manifests/0f/github.com__superbianc__scmulan.json +138 -0
  36. manifests/0f/zenodo__21287687.json +147 -0
  37. manifests/0f/zenodo__21476369.json +147 -0
  38. manifests/10/github.com__alexdobin__star.json +2991 -0
  39. manifests/10/github.com__yz-hust__echo-dfcnn.json +183 -0
  40. manifests/10/zenodo__19897907.json +345 -0
  41. manifests/11/github.com__kavrakilab__stag_public.json +156 -0
  42. manifests/11/github.com__sun-hongyu__qno.json +75 -0
  43. manifests/11/zenodo__14029241.json +30 -0
  44. manifests/12/github.com__abisee__cnn-dailymail.json +39 -0
  45. manifests/12/github.com__bencefogel__currentscapes-simple-model-examples.json +345 -0
  46. manifests/12/github.com__kelschlab__nosemaze-stablerichclubs.json +390 -0
  47. manifests/12/github.com__tanxiaoxiu__gnode.json +93 -0
  48. manifests/12/github.com__tnguyen1992__tinydancer.json +597 -0
  49. manifests/13/github.com__nuoxuxu__sfari.json +2181 -0
  50. manifests/13/zenodo__20605863.json +210 -0
README.md CHANGED
@@ -19,8 +19,8 @@ The code published by the authors of open-access neuroscience papers, as found a
19
  verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified
20
  commit, **under the license of its repository**.
21
 
22
- - **14,864 unique files** (127 MB of text) from **375 repositories**,
23
- in 2 Parquet block(s).
24
  - **Only files whose repository's license allows redistribution**, confirmed by the
25
  repository's own license file (or, for an archive without one, by its record). Files
26
  without such a license are never copied here: Open Scientific Code Registry (OSCR) links to them at the source.
@@ -43,21 +43,26 @@ Each file keeps the license of its repository, given in the repository's manifes
43
 
44
  | license | repositories |
45
  |---|---|
46
- | MIT | 178 |
47
- | CC-BY-4.0 | 72 |
48
- | GPL-3.0 | 52 |
49
- | Apache-2.0 | 22 |
50
- | BSD-3-Clause | 17 |
51
- | CC0-1.0 | 10 |
52
- | GPL-2.0 | 5 |
53
- | CC-BY-NC-SA-4.0 | 5 |
54
- | BSD-2-Clause | 4 |
55
- | AGPL-3.0 | 3 |
56
- | CC-BY-NC-ND-4.0 | 2 |
57
- | CC-BY-NC-4.0 | 2 |
58
- | other-open | 1 |
59
- | LGPL-3.0 | 1 |
60
- | CC-BY-SA-4.0 | 1 |
 
 
 
 
 
61
 
62
  Files under a non-commercial license (CC BY-NC…) may only be reused non-commercially.
63
 
 
19
  verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified
20
  commit, **under the license of its repository**.
21
 
22
+ - **46,356 unique files** (368 MB of text) from **920 repositories**,
23
+ in 4 Parquet block(s).
24
  - **Only files whose repository's license allows redistribution**, confirmed by the
25
  repository's own license file (or, for an archive without one, by its record). Files
26
  without such a license are never copied here: Open Scientific Code Registry (OSCR) links to them at the source.
 
43
 
44
  | license | repositories |
45
  |---|---|
46
+ | MIT | 404 |
47
+ | CC-BY-4.0 | 190 |
48
+ | GPL-3.0 | 139 |
49
+ | Apache-2.0 | 63 |
50
+ | BSD-3-Clause | 50 |
51
+ | CC0-1.0 | 16 |
52
+ | GPL-2.0 | 13 |
53
+ | BSD-2-Clause | 10 |
54
+ | CC-BY-NC-SA-4.0 | 7 |
55
+ | CC-BY-NC-4.0 | 6 |
56
+ | AGPL-3.0 | 5 |
57
+ | CC-BY-NC-ND-4.0 | 4 |
58
+ | other-open | 3 |
59
+ | LGPL-3.0 | 3 |
60
+ | CC-BY-SA-4.0 | 2 |
61
+ | MPL-2.0 | 1 |
62
+ | LGPL-2.1 | 1 |
63
+ | EUPL-1.2 | 1 |
64
+ | CECILL-2.1 | 1 |
65
+ | Artistic-2.0 | 1 |
66
 
67
  Files under a non-commercial license (CC BY-NC…) may only be reused non-commercially.
68
 
blocks/00003.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a465e0e93502a11a7aabed2b1c00002dbfc99988d7bda0de6d6d3377f0dca834
3
+ size 40215326
blocks/00004.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:8fcc812a0e1c3d60c5b189330b5ef99ca884b615dd2d330d8f18728ec0ebfb0b
3
+ size 6648631
manifests/00/github.com__mychan24__system-segregation-and-graph-tools.json ADDED
@@ -0,0 +1,183 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/mychan24/system-segregation-and-graph-tools",
4
+ "url": "https://github.com/mychan24/system-segregation-and-graph-tools",
5
+ "host": "github.com",
6
+ "commit": "e7c30345b8ebf29e3a9ab44593d95e41cd0b16ed",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "0f1d39d8948e73622b35bd4516a38a1e839e4c124cbe20a1ebdf9f21983843e7",
14
+ "language": "License",
15
+ "lines": 21,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 7984
19
+ },
20
+ {
21
+ "path": "MATLAB/export/colormap_roi.m",
22
+ "sha256": "e20ecd56fa5b3399fa0ead15be71f57d009239d952b1c4d2886178e0d6a3a498",
23
+ "language": "MATLAB",
24
+ "lines": 208,
25
+ "truncated": false,
26
+ "block": 3,
27
+ "row": 15207
28
+ },
29
+ {
30
+ "path": "MATLAB/export/colormap_roi_meta.m",
31
+ "sha256": "f478e711bb343194fdf3ae4ad34310e423a7f6b141c44c5288c80f7d0a162dd9",
32
+ "language": "MATLAB",
33
+ "lines": 240,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 15749
37
+ },
38
+ {
39
+ "path": "MATLAB/fsLR2roizmat.m",
40
+ "sha256": "0a5aaef05d7a033d58b447e8f43982ef86d6c1ca47e0416a3a7aaddf92900a14",
41
+ "language": "MATLAB",
42
+ "lines": 98,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 13580
46
+ },
47
+ {
48
+ "path": "MATLAB/fsLR2roizmat_ciftidat_ciftinode.m",
49
+ "sha256": "751df264668c41afb8e7a8840d3eb259a1c60ccf4a48e5a21497088e18991fc6",
50
+ "language": "MATLAB",
51
+ "lines": 62,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 11757
55
+ },
56
+ {
57
+ "path": "MATLAB/fsLR2roizmat_ciftidat_giftinode.m",
58
+ "sha256": "df041c0a3f1e25b25b734f5c7f219cb539ba83d84db4a2227e1a5fcdca2e0c80",
59
+ "language": "MATLAB",
60
+ "lines": 81,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 12727
64
+ },
65
+ {
66
+ "path": "MATLAB/map_to_gii.m",
67
+ "sha256": "0f928122ea062d7247dcd5707a0349c86021b2a5af76767f9ac2e24f597186a4",
68
+ "language": "MATLAB",
69
+ "lines": 44,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 11154
73
+ },
74
+ {
75
+ "path": "MATLAB/mat2cytoscape.m",
76
+ "sha256": "6aa2c4772904b216a3e3b04074fb928515135ef71a5204cffc9a9e524d8809d1",
77
+ "language": "MATLAB",
78
+ "lines": 42,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 10971
82
+ },
83
+ {
84
+ "path": "MATLAB/segregation.m",
85
+ "sha256": "1f6f4fb1704bf0a572a158682c612b91ccc5d755e9fd32e4dc2c0993874c9511",
86
+ "language": "MATLAB",
87
+ "lines": 71,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 12336
91
+ },
92
+ {
93
+ "path": "MATLAB/segregation_by_type_eqcont.m",
94
+ "sha256": "07c3d92b51687e07e8f846ff4d407b24cf335296124089c99570b5787bbbd2fa",
95
+ "language": "MATLAB",
96
+ "lines": 155,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 15335
100
+ },
101
+ {
102
+ "path": "MATLAB/segregation_by_type_prcont.m",
103
+ "sha256": "e0727dd7c748e0f19a6cff888c97ed40cd58269cc0c62d83d6ec73a4adb5358a",
104
+ "language": "MATLAB",
105
+ "lines": 164,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 15599
109
+ },
110
+ {
111
+ "path": "R/segregation.R",
112
+ "sha256": "7a70b5ded61104448b15c490a2eed49d184023fe665cfd973485540d2d23fa19",
113
+ "language": "R",
114
+ "lines": 63,
115
+ "truncated": false,
116
+ "block": 4,
117
+ "row": 407
118
+ },
119
+ {
120
+ "path": "R/segregation_by_type_eqcont.R",
121
+ "sha256": "f9adcd37ec858f4d7e3431393c9be9b3ec374192716c5265abd0c98223e466d3",
122
+ "language": "R",
123
+ "lines": 100,
124
+ "truncated": false,
125
+ "block": 4,
126
+ "row": 705
127
+ },
128
+ {
129
+ "path": "R/segregation_by_type_prcont.R",
130
+ "sha256": "5e2b0b1121e1949535a4d862d4e753e0a5f8c6a9787eb08e088c0df88cc0a7fa",
131
+ "language": "R",
132
+ "lines": 105,
133
+ "truncated": false,
134
+ "block": 4,
135
+ "row": 714
136
+ },
137
+ {
138
+ "path": "R/segregation_individual_systems.R",
139
+ "sha256": "d9a0daec2c320fd5a614bcb2634e766f258da143500ff131f77964c567cea491",
140
+ "language": "R",
141
+ "lines": 55,
142
+ "truncated": false,
143
+ "block": 4,
144
+ "row": 395
145
+ },
146
+ {
147
+ "path": "README.md",
148
+ "sha256": "6c2734192124339c512c7d753d6a676c4399225be99e4b9dff85aa161f2d9fe4",
149
+ "language": "Text",
150
+ "lines": 20,
151
+ "truncated": false,
152
+ "block": 4,
153
+ "row": 2382
154
+ },
155
+ {
156
+ "path": "test/b_other_example.m",
157
+ "sha256": "f175b2bbaeda5d13154be407ffd3b0e6d05373c3e2a3829019032d574297c38e",
158
+ "language": "MATLAB",
159
+ "lines": 27,
160
+ "truncated": false,
161
+ "block": 3,
162
+ "row": 9935
163
+ },
164
+ {
165
+ "path": "test/testR.R",
166
+ "sha256": "42be56fc6959c5870d0b2374968b607775307b82765718a36139f1061e1dad82",
167
+ "language": "R",
168
+ "lines": 63,
169
+ "truncated": false,
170
+ "block": 4,
171
+ "row": 322
172
+ },
173
+ {
174
+ "path": "test/test_segtype_proc.R",
175
+ "sha256": "65184f7507741a7592550fe71495054f8d0819808a683b60bc5a696800ddfaa9",
176
+ "language": "R",
177
+ "lines": 42,
178
+ "truncated": false,
179
+ "block": 4,
180
+ "row": 323
181
+ }
182
+ ]
183
+ }
manifests/00/github.com__nwharbert8-ui__eif2s1-translational-qc-hubsub.json ADDED
@@ -0,0 +1,129 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/nwharbert8-ui/eif2s1-translational-qc-hubsub",
4
+ "url": "https://github.com/nwharbert8-ui/eif2s1-translational-qc-hubsub",
5
+ "host": "github.com",
6
+ "commit": "cb7a7c0579d1aaa80d91933c246d891fd4d8d4a0",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "d9bbf7e10a3f79143d1c5080f1b1353a3be7d53dc8f5a6331fb184e5977c390b",
14
+ "language": "License",
15
+ "lines": 21,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 8078
19
+ },
20
+ {
21
+ "path": "MS2_EIF2S1_Definitive_Pipeline.py",
22
+ "sha256": "3f0248e1b4bb909fa833928f251607ababe268694b84753c53edbc654dd4d282",
23
+ "language": "Python",
24
+ "lines": 1355,
25
+ "truncated": false,
26
+ "block": 3,
27
+ "row": 28014
28
+ },
29
+ {
30
+ "path": "README.md",
31
+ "sha256": "b27a3fc9b62951993d72d920c73f7bc52f5f209eb51e7769f8dafe36b2974e5d",
32
+ "language": "Text",
33
+ "lines": 166,
34
+ "truncated": false,
35
+ "block": 4,
36
+ "row": 2633
37
+ },
38
+ {
39
+ "path": "r3_revision_pipelines/pipeline_10_disease_meta_rnaseq.py",
40
+ "sha256": "133405ebbe3bcaf5a4ea6f679b9f411f0f8d1cd326833cc8519081f028825267",
41
+ "language": "Python",
42
+ "lines": 132,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 24042
46
+ },
47
+ {
48
+ "path": "r3_revision_pipelines/pipeline_1_tcf25_asc1.py",
49
+ "sha256": "0200ee9bd96b5da3789f0efe3b17530a4300cbb6b253c478ac3cec8a997a2b82",
50
+ "language": "Python",
51
+ "lines": 246,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 25787
55
+ },
56
+ {
57
+ "path": "r3_revision_pipelines/pipeline_2_disease_replication.py",
58
+ "sha256": "8d99bb3f8586ee9c427a2237a7f546f4c0ad7aad62a1d8030fa8d25e8b7b38d8",
59
+ "language": "Python",
60
+ "lines": 412,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 27040
64
+ },
65
+ {
66
+ "path": "r3_revision_pipelines/pipeline_3_depmap.py",
67
+ "sha256": "935caad437cf6cb6ab6a5df497be0814a18c50c192caa2cf291c02f32797f53c",
68
+ "language": "Python",
69
+ "lines": 231,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 25550
73
+ },
74
+ {
75
+ "path": "r3_revision_pipelines/pipeline_4_layer2h_pairing.py",
76
+ "sha256": "e0f48a99e780c3a0663723d6deebd6040c98e003ff9fe7ff4ff1fe8f441bef11",
77
+ "language": "Python",
78
+ "lines": 315,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 26506
82
+ },
83
+ {
84
+ "path": "r3_revision_pipelines/pipeline_5_formal_layer2h.py",
85
+ "sha256": "d87c3d50ba35f6e781844ab568965881d2c5caded37d54a648685cef4583f153",
86
+ "language": "Python",
87
+ "lines": 561,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 27335
91
+ },
92
+ {
93
+ "path": "r3_revision_pipelines/pipeline_6_string_ppi.py",
94
+ "sha256": "270787a347c61e827bb83e67e42237b85f1972fcc32e3481ae25b074a1ab5997",
95
+ "language": "Python",
96
+ "lines": 158,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 24529
100
+ },
101
+ {
102
+ "path": "r3_revision_pipelines/pipeline_7_disease_significance.py",
103
+ "sha256": "0f08f04e23f2e756a6e176594b7c1a0166683b6a68257c0eb7b3816c4726f51e",
104
+ "language": "Python",
105
+ "lines": 197,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 25168
109
+ },
110
+ {
111
+ "path": "r3_revision_pipelines/pipeline_8_disease_ad_gse5281.py",
112
+ "sha256": "1a669bc66159cfdbe8e02a8325fa0fdb23ef5a74ada44d19e3897a6dc93f4a87",
113
+ "language": "Python",
114
+ "lines": 175,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 24970
118
+ },
119
+ {
120
+ "path": "r3_revision_pipelines/pipeline_9_disease_als_gse124439.py",
121
+ "sha256": "dc17a3937665a018fec97c0f8a4e68572d57ed413c15305c3d1b015b01bd737d",
122
+ "language": "Python",
123
+ "lines": 146,
124
+ "truncated": false,
125
+ "block": 3,
126
+ "row": 24387
127
+ }
128
+ ]
129
+ }
manifests/01/github.com__datax-jiehao__minet.json ADDED
@@ -0,0 +1,93 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/datax-jiehao/minet",
4
+ "url": "https://github.com/DataX-JieHao/MiNet",
5
+ "host": "github.com",
6
+ "commit": "6ac79c942b79bfc84d9ee5c60b007b3e6cd42db9",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "2939543ceb8a3e1f88c14e902b41d8e3ea055001da512fb4bf48b510a5b719ed",
14
+ "language": "License",
15
+ "lines": 21,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 7926
19
+ },
20
+ {
21
+ "path": "MiNet/DataLoader.py",
22
+ "sha256": "8f6e28ae5e94f28a941a5f5d2d9c6e3b134ae3f738d861b7f0e3ffbf47bc4387",
23
+ "language": "Python",
24
+ "lines": 39,
25
+ "truncated": false,
26
+ "block": 3,
27
+ "row": 18952
28
+ },
29
+ {
30
+ "path": "MiNet/Eval.py",
31
+ "sha256": "bcdf0fe0032b149adaaa22e418817d114b4b3ff08089eee8a6497bd0b8fdd278",
32
+ "language": "Python",
33
+ "lines": 71,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 21644
37
+ },
38
+ {
39
+ "path": "MiNet/Net.py",
40
+ "sha256": "44202eadb88b998b9e90d135e3e5e749edd953185438005ab6cfacce803ef381",
41
+ "language": "Python",
42
+ "lines": 56,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 20803
46
+ },
47
+ {
48
+ "path": "MiNet/Run.py",
49
+ "sha256": "a990a11f07d7a6e4c95ae0f5185cffaaae71ec71304a3733ec4fc1e5bb82c59b",
50
+ "language": "Python",
51
+ "lines": 68,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 21473
55
+ },
56
+ {
57
+ "path": "MiNet/SparseCoding.py",
58
+ "sha256": "d824e9244568b7f677289844c20a2ac5758ebd98c2ab9be1fceb4ad75fecb760",
59
+ "language": "Python",
60
+ "lines": 130,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 23262
64
+ },
65
+ {
66
+ "path": "MiNet/Survival_CostFunc_CIndex.py",
67
+ "sha256": "2d48df62ed24fe3c642cb977aceddb64fcaa71bb8e1fc21a437c977920d40c7e",
68
+ "language": "Python",
69
+ "lines": 71,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 20728
73
+ },
74
+ {
75
+ "path": "MiNet/Train.py",
76
+ "sha256": "b44f25a08aa510b98d521462fa30da016eac89ff2cd5ada9f4c6cde36c3291be",
77
+ "language": "Python",
78
+ "lines": 70,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 21651
82
+ },
83
+ {
84
+ "path": "README.md",
85
+ "sha256": "92aa9be8519f5d99753ad95648a2152c67b088843b072c9ab9f8b5b7084da225",
86
+ "language": "Text",
87
+ "lines": 19,
88
+ "truncated": false,
89
+ "block": 4,
90
+ "row": 2333
91
+ }
92
+ ]
93
+ }
manifests/02/github.com__haozhaozhe__fm_v1.json ADDED
@@ -0,0 +1,84 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/haozhaozhe/fm_v1",
4
+ "url": "https://github.com/haozhaozhe/FM_V1",
5
+ "host": "github.com",
6
+ "commit": "360f770e4cae8b6cebcf0748f3f9d2b8c9daa2aa",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "5a55cccbcfe292b7e15f485c3216cf9f65294a521780e1d09984d9f58eb64a6a",
14
+ "language": "License",
15
+ "lines": 21,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 7959
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "3bba13e9da357b263dfe750b59a5a471c9466eebf8dad24b34d56bea26ea2454",
23
+ "language": "Text",
24
+ "lines": 26,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2340
28
+ },
29
+ {
30
+ "path": "code/Fig1_summary.py",
31
+ "sha256": "805e2ddaf604fcf856e5969dd5a3a68b64450d3a6a513bd36410c52e8c1fd842",
32
+ "language": "Python",
33
+ "lines": 80,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 20548
37
+ },
38
+ {
39
+ "path": "code/Fig2_humk_glut_homology_matrix.py",
40
+ "sha256": "369a1b728cfeef90b0b41606dcabad0da0d493e4b4a981fc802808453b52a084",
41
+ "language": "Python",
42
+ "lines": 281,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 25902
46
+ },
47
+ {
48
+ "path": "code/Fig3_humk_GABA_homology_matrix.py",
49
+ "sha256": "13349906165a8aeae9c5775c39b59eb68705cc9e1762e931e15be3a4169d11ff",
50
+ "language": "Python",
51
+ "lines": 178,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 23644
55
+ },
56
+ {
57
+ "path": "code/Fig4_Exc_NPY.py",
58
+ "sha256": "af56600ca644007acf2b4468ebc01063fdf56eaefecbcd53f66f8c0a2087f20c",
59
+ "language": "Python",
60
+ "lines": 161,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 23334
64
+ },
65
+ {
66
+ "path": "code/Fig5_OSTN.py",
67
+ "sha256": "0ec69fc866f60198b895acd8023a66c5f42c60f61cf6c599d180d754bd20a521",
68
+ "language": "Python",
69
+ "lines": 221,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 24645
73
+ },
74
+ {
75
+ "path": "code/Fig6_Xcorr.py",
76
+ "sha256": "c4b443c3763e7b9f476efa49e2becc22e8eb73c8f8aae3b92c80fab8c0254081",
77
+ "language": "Python",
78
+ "lines": 882,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 27582
82
+ }
83
+ ]
84
+ }
manifests/02/github.com__villeneuvelab__vlpp.json ADDED
@@ -0,0 +1,345 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/villeneuvelab/vlpp",
4
+ "url": "https://github.com/villeneuvelab/vlpp/tree/20190611",
5
+ "host": "github.com",
6
+ "commit": "88d3cc43742e594237153c9cdd98efc345836287",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file license.txt",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "README.md",
13
+ "sha256": "adb031a9bcc8e901a83879f96870d07250fea3f39331c26c8f7ace975f829384",
14
+ "language": "Text",
15
+ "lines": 68,
16
+ "truncated": false,
17
+ "block": 4,
18
+ "row": 2403
19
+ },
20
+ {
21
+ "path": "license.txt",
22
+ "sha256": "587d994a3609f8c68a2a3804afedde00025ad8236f173824fe2694b9213d343b",
23
+ "language": "License",
24
+ "lines": 22,
25
+ "truncated": false,
26
+ "block": 3,
27
+ "row": 8066
28
+ },
29
+ {
30
+ "path": "pipelines/templates/apply_anat2tpl.py",
31
+ "sha256": "46567c38c17e9f39e56b8f54b6f7907f7b168dba1ae89d93336a1dd9f542828f",
32
+ "language": "Python",
33
+ "lines": 37,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 18747
37
+ },
38
+ {
39
+ "path": "pipelines/templates/apply_pet2anat.py",
40
+ "sha256": "4eaee1bfc548564cdb7da53e7ffc776c5eb60472e65c4be13510aa5f0db1cdcc",
41
+ "language": "Python",
42
+ "lines": 137,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 22407
46
+ },
47
+ {
48
+ "path": "pipelines/templates/compute_metrics_anat.py",
49
+ "sha256": "b62014021f93d6563ddb3e6512f93639fa7be9fa0e734320483942bad02bb22d",
50
+ "language": "Python",
51
+ "lines": 41,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 18875
55
+ },
56
+ {
57
+ "path": "pipelines/templates/compute_metrics_tpl.py",
58
+ "sha256": "55e13801314a0f5b843f08bfc3e05ebce02ce41f2a6b831a3147e983383c2301",
59
+ "language": "Python",
60
+ "lines": 54,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 19464
64
+ },
65
+ {
66
+ "path": "pipelines/templates/estimate_pet2anat_ants.sh",
67
+ "sha256": "6678e88acbecf467eefa615d2c904aebd1a57ec22ee1f869432dc46713189995",
68
+ "language": "Shell",
69
+ "lines": 20,
70
+ "truncated": false,
71
+ "block": 4,
72
+ "row": 1610
73
+ },
74
+ {
75
+ "path": "pipelines/templates/estimate_pet2anat_spm.py",
76
+ "sha256": "da073927c437940baa2e4c97c1a0fd418f63fee099a07f33102f57b77ee15b6b",
77
+ "language": "Python",
78
+ "lines": 26,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 18427
82
+ },
83
+ {
84
+ "path": "pipelines/templates/petconvert.py",
85
+ "sha256": "9cae04072b964805b6ee9ccbc99ff9a5ab0763f18d68ccc21c12e40f7ac3d5fc",
86
+ "language": "Python",
87
+ "lines": 33,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 18921
91
+ },
92
+ {
93
+ "path": "pipelines/templates/pickatlas.py",
94
+ "sha256": "69a0ae5a1cb661c861fc146517a2a71528883c8b7d3e46fb4450a1b25f809a2e",
95
+ "language": "Python",
96
+ "lines": 14,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 17789
100
+ },
101
+ {
102
+ "path": "pipelines/templates/qa_mosaics_T1w.py",
103
+ "sha256": "7c7a7fcb7d30f3741ccb24ce10473a55934c71543570837fddebce7fe40e16a1",
104
+ "language": "Python",
105
+ "lines": 82,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 20327
109
+ },
110
+ {
111
+ "path": "pipelines/templates/qa_mosaics_suit.py",
112
+ "sha256": "81eedce724f0a190cc0745f11193a73ce681ab516c76173ce0e6bf02fc673425",
113
+ "language": "Python",
114
+ "lines": 46,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 19054
118
+ },
119
+ {
120
+ "path": "pipelines/templates/qa_mosaics_tpl.py",
121
+ "sha256": "70bdb4a8d7a56841f37d2c6dd4edab4c12a51e6d695f12c27102de119ac25726",
122
+ "language": "Python",
123
+ "lines": 62,
124
+ "truncated": false,
125
+ "block": 3,
126
+ "row": 19684
127
+ },
128
+ {
129
+ "path": "pipelines/templates/realign.py",
130
+ "sha256": "12b9264e05610c58089e4cd920dccdc27641c537e1c9bb11a76b5b342fdc0fe6",
131
+ "language": "Python",
132
+ "lines": 23,
133
+ "truncated": false,
134
+ "block": 3,
135
+ "row": 17905
136
+ },
137
+ {
138
+ "path": "pipelines/templates/reorient_anat.py",
139
+ "sha256": "4c000bd13e3408a405d3afce0f75b0454bed0637ce260490c3b940309a7393bf",
140
+ "language": "Python",
141
+ "lines": 39,
142
+ "truncated": false,
143
+ "block": 3,
144
+ "row": 18856
145
+ },
146
+ {
147
+ "path": "pipelines/templates/reorient_pet.py",
148
+ "sha256": "72df66c996cd559fa6a67b909de787123fea2f816173d2e3f9cb0a9cc9dc0f68",
149
+ "language": "Python",
150
+ "lines": 31,
151
+ "truncated": false,
152
+ "block": 3,
153
+ "row": 18570
154
+ },
155
+ {
156
+ "path": "pipelines/templates/segmentation.py",
157
+ "sha256": "86ab4def8348054ceea6d2558b239417c64bd97e910c3285f8a512cb9fd67263",
158
+ "language": "Python",
159
+ "lines": 89,
160
+ "truncated": false,
161
+ "block": 3,
162
+ "row": 20436
163
+ },
164
+ {
165
+ "path": "pipelines/templates/suvr_baker.py",
166
+ "sha256": "bd5fa97410be8efdb60804dda04646ff9487e543c5efb23f0fa16c3d0a739445",
167
+ "language": "Python",
168
+ "lines": 64,
169
+ "truncated": false,
170
+ "block": 3,
171
+ "row": 19859
172
+ },
173
+ {
174
+ "path": "setup.py",
175
+ "sha256": "8e0608476fe50b0d7367c32c429f7594aa05f7c76d1f5799842b975bce44042c",
176
+ "language": "Python",
177
+ "lines": 41,
178
+ "truncated": false,
179
+ "block": 3,
180
+ "row": 19097
181
+ },
182
+ {
183
+ "path": "templates/apply_anat2tpl.m",
184
+ "sha256": "55648a10b612ff04968911e664828d8151c4ae3e04d5382e599b06be863c6450",
185
+ "language": "MATLAB",
186
+ "lines": 40,
187
+ "truncated": false,
188
+ "block": 3,
189
+ "row": 12249
190
+ },
191
+ {
192
+ "path": "templates/beluga.sh",
193
+ "sha256": "cff4a14c102d661f8d7d5212f2eafe3e113728aae84cad646566b5d7261392fb",
194
+ "language": "Shell",
195
+ "lines": 67,
196
+ "truncated": false,
197
+ "block": 4,
198
+ "row": 1836
199
+ },
200
+ {
201
+ "path": "templates/estimate_pet2anat.m",
202
+ "sha256": "970ea71da7abcc76cc6b56cddce041dea153583de364a88f1a354ddca53dd7ab",
203
+ "language": "MATLAB",
204
+ "lines": 45,
205
+ "truncated": false,
206
+ "block": 3,
207
+ "row": 11873
208
+ },
209
+ {
210
+ "path": "templates/guillimin.sh",
211
+ "sha256": "01a8438b3c06bdd9bb78e9483d3d959f5d75ca6f4d3ccc97a039cad4d495e1fa",
212
+ "language": "Shell",
213
+ "lines": 67,
214
+ "truncated": false,
215
+ "block": 4,
216
+ "row": 1849
217
+ },
218
+ {
219
+ "path": "templates/qa_dataSubjects.js",
220
+ "sha256": "8e7cb928cee9fcb0edc305ef172a572ffe1f6a5896321357d57c0a06a9ea09d4",
221
+ "language": "JavaScript",
222
+ "lines": 14,
223
+ "truncated": false,
224
+ "block": 3,
225
+ "row": 6734
226
+ },
227
+ {
228
+ "path": "templates/realign.m",
229
+ "sha256": "626a632552318d0cd52080f4aeb1eb09910e511285647705c3f72f164177b409",
230
+ "language": "MATLAB",
231
+ "lines": 43,
232
+ "truncated": false,
233
+ "block": 3,
234
+ "row": 12107
235
+ },
236
+ {
237
+ "path": "templates/seg_spm12.m",
238
+ "sha256": "3c9d7e4905081c0f96477eec96187eafbb8c92311f4809dbd27065e8863566f5",
239
+ "language": "MATLAB",
240
+ "lines": 59,
241
+ "truncated": false,
242
+ "block": 3,
243
+ "row": 13564
244
+ },
245
+ {
246
+ "path": "templates/seg_suit.m",
247
+ "sha256": "27be9c2694866dcbafb92360e4329462418d760d6bd892b2976eb65a16fb7b7e",
248
+ "language": "MATLAB",
249
+ "lines": 70,
250
+ "truncated": false,
251
+ "block": 3,
252
+ "row": 14022
253
+ },
254
+ {
255
+ "path": "templates/set_origin_to_centerOfMass_anat.m",
256
+ "sha256": "ccd696f81f345f5440b7c6dee051d41cea88664e91b56dfabaa39f87bb444a14",
257
+ "language": "MATLAB",
258
+ "lines": 57,
259
+ "truncated": false,
260
+ "block": 3,
261
+ "row": 11946
262
+ },
263
+ {
264
+ "path": "templates/set_origin_to_centerOfMass_pet.m",
265
+ "sha256": "af91e0844c6ab540cce7c3ed730d084bcc377e64e2696abcba255fcea8a0131e",
266
+ "language": "MATLAB",
267
+ "lines": 57,
268
+ "truncated": false,
269
+ "block": 3,
270
+ "row": 11995
271
+ },
272
+ {
273
+ "path": "templates/suvr_baker.m",
274
+ "sha256": "e01cb257f4e87b9ac400c189e441e9101d8b27307744a70f0e03e21f27ca4669",
275
+ "language": "MATLAB",
276
+ "lines": 30,
277
+ "truncated": false,
278
+ "block": 3,
279
+ "row": 10421
280
+ },
281
+ {
282
+ "path": "vlpp/__init__.py",
283
+ "sha256": "8b084a9f378124b2b1a51563bf3c22444eb7ff33692017da28b2136ae56987ed",
284
+ "language": "Python",
285
+ "lines": 1,
286
+ "truncated": false,
287
+ "block": 3,
288
+ "row": 17361
289
+ },
290
+ {
291
+ "path": "vlpp/dashboards.py",
292
+ "sha256": "2bd4626164a9f2399d06203d85c7876c0c61eafcc4bf3f8b93afe22684c7fcb9",
293
+ "language": "Python",
294
+ "lines": 144,
295
+ "truncated": false,
296
+ "block": 3,
297
+ "row": 22647
298
+ },
299
+ {
300
+ "path": "vlpp/operation.py",
301
+ "sha256": "df4beacddfa3b47bf3fd32037f930d18a62254f77fe03cb2f36c202cf62316d1",
302
+ "language": "Python",
303
+ "lines": 198,
304
+ "truncated": false,
305
+ "block": 3,
306
+ "row": 23691
307
+ },
308
+ {
309
+ "path": "vlpp/qamosaic.py",
310
+ "sha256": "ff44060fbcfc1fa38855e23550f899e7f3f4b888f661effdd92f1b2742694f17",
311
+ "language": "Python",
312
+ "lines": 262,
313
+ "truncated": false,
314
+ "block": 3,
315
+ "row": 24273
316
+ },
317
+ {
318
+ "path": "vlpp/realign.py",
319
+ "sha256": "4ce4c5d087a60db2ad9722514dba5f0edb82f6370e00ffbf9095db53099b8b5e",
320
+ "language": "Python",
321
+ "lines": 169,
322
+ "truncated": false,
323
+ "block": 3,
324
+ "row": 22938
325
+ },
326
+ {
327
+ "path": "vlpp/registration.py",
328
+ "sha256": "0573efa2caea1a24fd584a9368fb9f480734e84eef5e60e7c059a45fbe77bdeb",
329
+ "language": "Python",
330
+ "lines": 81,
331
+ "truncated": false,
332
+ "block": 3,
333
+ "row": 20480
334
+ },
335
+ {
336
+ "path": "vlpp/utils.py",
337
+ "sha256": "7cbc505db554fbf9c710752f794789de078c7faa44d73966bfdb17f14efbf2ee",
338
+ "language": "Python",
339
+ "lines": 114,
340
+ "truncated": false,
341
+ "block": 3,
342
+ "row": 20764
343
+ }
344
+ ]
345
+ }
manifests/03/github.com__gnacode__mdpi-montecarlo.json ADDED
@@ -0,0 +1,57 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/gnacode/mdpi-montecarlo",
4
+ "url": "https://github.com/Gnacode/MDPI-MONTECARLO",
5
+ "host": "github.com",
6
+ "commit": "5fc26c45dc74cdcc27757325ffb8d562c95df28c",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "f6087ea7322d54e7eabb357163c34aa3eb5e73d6f003ed2c9b4f26eed67ff87b",
14
+ "language": "License",
15
+ "lines": 21,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 7931
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "7f452605f75f3b16dac204aea35853bbc1fb829bc2488fa6160de68c6ee9d23e",
23
+ "language": "Text",
24
+ "lines": 71,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2481
28
+ },
29
+ {
30
+ "path": "comparators_classical.py",
31
+ "sha256": "e456394855b8d307e758f1a30e36a4e0f86a0f3de12a3b3fe45046568f69a32b",
32
+ "language": "Python",
33
+ "lines": 898,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 27755
37
+ },
38
+ {
39
+ "path": "setup_venv.sh",
40
+ "sha256": "6958b20960d679090d6aa42b24f7d3a08a488de87bcb290aad50deaa4fb7d0d7",
41
+ "language": "Shell",
42
+ "lines": 9,
43
+ "truncated": false,
44
+ "block": 4,
45
+ "row": 1391
46
+ },
47
+ {
48
+ "path": "simulator_v1_2.py",
49
+ "sha256": "bc75b2236646d2c9b93fb5a0f032cec18078a42ff5e60a32d0b66fbe614edf03",
50
+ "language": "Python",
51
+ "lines": 3474,
52
+ "truncated": false,
53
+ "block": 4,
54
+ "row": 112
55
+ }
56
+ ]
57
+ }
manifests/03/github.com__palombom__sandi-matlab-toolbox-latest-release.json ADDED
@@ -0,0 +1,822 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/palombom/sandi-matlab-toolbox-latest-release",
4
+ "url": "https://github.com/palombom/SANDI-Matlab-Toolbox-Latest-Release",
5
+ "host": "github.com",
6
+ "commit": "2589339a2996c1ad573adf9aaaa19d4aafdb6100",
7
+ "license": "BSD-2-Clause",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "b7d18e8e7d0a35f18aa1185cfe2083121dedc01ffa4ef0ff7743aaf2ee36df42",
14
+ "language": "License",
15
+ "lines": 24,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 8100
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "a80df2724a3434264835d4f7bae337c34b5bc8bd26419f7e8adf5641fa17c706",
23
+ "language": "Text",
24
+ "lines": 120,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2668
28
+ },
29
+ {
30
+ "path": "SANDI_batch_analysis.m",
31
+ "sha256": "859f1150a495ed63afc8ee7c7bc5e9d5d524c0023770cc3ca5fa8a926c798f9b",
32
+ "language": "MATLAB",
33
+ "lines": 110,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 15170
37
+ },
38
+ {
39
+ "path": "functions/ML_fitting/apply_MLP_matlab.m",
40
+ "sha256": "e583489cc07a24bb3fc7f4ac3c5e1913f2b819bbb30464a7a1cbbf77f62bb9cf",
41
+ "language": "MATLAB",
42
+ "lines": 52,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 10520
46
+ },
47
+ {
48
+ "path": "functions/ML_fitting/apply_RF_matlab.m",
49
+ "sha256": "a44d470c0e167ed2f4f48edb39f33afbadb8ed42f5c7165737579794d6e28150",
50
+ "language": "MATLAB",
51
+ "lines": 24,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 9145
55
+ },
56
+ {
57
+ "path": "functions/ML_fitting/build_training_set.m",
58
+ "sha256": "2ebbd164d1c14efbbe1c622d19bb429de60d3d1955fc2c6311fb378c24a27b6d",
59
+ "language": "MATLAB",
60
+ "lines": 131,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 14720
64
+ },
65
+ {
66
+ "path": "functions/ML_fitting/build_training_set_with_dot.m",
67
+ "sha256": "aea449d6e06902c0bfd2da488536075a8fcc8a5bfd2f734c8d99598c10021f40",
68
+ "language": "MATLAB",
69
+ "lines": 122,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 14210
73
+ },
74
+ {
75
+ "path": "functions/ML_fitting/run_model_fitting.m",
76
+ "sha256": "4012658a145a9dc6f1d1293390e020b7c7dfc7004df8d17d079aa31ca1abf1c6",
77
+ "language": "MATLAB",
78
+ "lines": 330,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 16304
82
+ },
83
+ {
84
+ "path": "functions/ML_fitting/run_model_fitting_forGUI.m",
85
+ "sha256": "ed007b8f6348ed72ba3257951263677f55f70bce58318d84c87c75aa93d353c3",
86
+ "language": "MATLAB",
87
+ "lines": 181,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 15078
91
+ },
92
+ {
93
+ "path": "functions/ML_fitting/run_model_fitting_only.m",
94
+ "sha256": "0320c06914b58ecd2c1209ea26b6b5f50ec8bad97d2b759075a2d00c78713e21",
95
+ "language": "MATLAB",
96
+ "lines": 153,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 14172
100
+ },
101
+ {
102
+ "path": "functions/ML_fitting/run_model_fitting_with_dot.m",
103
+ "sha256": "c6c841e27d842c4b5eea364d0973411c293e24a3b16b67b2c04db40ee1a69c64",
104
+ "language": "MATLAB",
105
+ "lines": 272,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 15967
109
+ },
110
+ {
111
+ "path": "functions/ML_fitting/run_model_fitting_with_dot_forGUI.m",
112
+ "sha256": "1e9fc066a184709365547bd75292cfd9484931f7e978e8ada8daf9383ff5038e",
113
+ "language": "MATLAB",
114
+ "lines": 181,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 15079
118
+ },
119
+ {
120
+ "path": "functions/ML_fitting/setup_and_run_model_training.m",
121
+ "sha256": "7b78c60e971b17bb45b1068dd516314050bb258ac3beadb0a81495459491230a",
122
+ "language": "MATLAB",
123
+ "lines": 609,
124
+ "truncated": false,
125
+ "block": 3,
126
+ "row": 16982
127
+ },
128
+ {
129
+ "path": "functions/ML_fitting/setup_and_run_model_training_forGUI.m",
130
+ "sha256": "83e8fa5c52f33ef8966d6a9ef5d4dddbbd9ac25a3bb8d7ebda3c1cc5ddb85575",
131
+ "language": "MATLAB",
132
+ "lines": 529,
133
+ "truncated": false,
134
+ "block": 3,
135
+ "row": 16847
136
+ },
137
+ {
138
+ "path": "functions/ML_fitting/setup_and_run_model_training_with_dot.m",
139
+ "sha256": "230fa640bb078594eafc2bbc3823ba93e1dbef7bca8b0e52c1c263b3f2fdad3c",
140
+ "language": "MATLAB",
141
+ "lines": 598,
142
+ "truncated": false,
143
+ "block": 3,
144
+ "row": 16974
145
+ },
146
+ {
147
+ "path": "functions/ML_fitting/setup_and_run_model_training_with_dot_forGUI.m",
148
+ "sha256": "2c19aa4f31a067f193c7158308c8072aed3304149cb702d49f5a8b60a3420be1",
149
+ "language": "MATLAB",
150
+ "lines": 532,
151
+ "truncated": false,
152
+ "block": 3,
153
+ "row": 16863
154
+ },
155
+ {
156
+ "path": "functions/ML_fitting/train_MLP_matlab.m",
157
+ "sha256": "935bfa7cfaecca635f79a50297f5b82defa73114a9e5f9544f14d35a3fc08fcc",
158
+ "language": "MATLAB",
159
+ "lines": 125,
160
+ "truncated": false,
161
+ "block": 3,
162
+ "row": 14595
163
+ },
164
+ {
165
+ "path": "functions/ML_fitting/train_RF_matlab.m",
166
+ "sha256": "b8c2bde246029a241c2ccadb491d8a2fbe3738dc76e1b27d7531d92dd37a7342",
167
+ "language": "MATLAB",
168
+ "lines": 44,
169
+ "truncated": false,
170
+ "block": 3,
171
+ "row": 10720
172
+ },
173
+ {
174
+ "path": "functions/NIfTI_20140122/affine.m",
175
+ "sha256": "a21e0554de2c513f00661be83895305455cf5f96a0618a9747e21de62f23239d",
176
+ "language": "MATLAB",
177
+ "lines": 554,
178
+ "truncated": false,
179
+ "block": 1,
180
+ "row": 4192
181
+ },
182
+ {
183
+ "path": "functions/NIfTI_20140122/bipolar.m",
184
+ "sha256": "ccb38cd1fbd48ef755943895b23d64a02fd024fa5491335223f105161b2a17cc",
185
+ "language": "MATLAB",
186
+ "lines": 94,
187
+ "truncated": false,
188
+ "block": 1,
189
+ "row": 3181
190
+ },
191
+ {
192
+ "path": "functions/NIfTI_20140122/bresenham_line3d.m",
193
+ "sha256": "8d16cdfaf1d14a62fb812e3923d7203f8c25011e49226ce17aaeb9d00f243f24",
194
+ "language": "MATLAB",
195
+ "lines": 189,
196
+ "truncated": false,
197
+ "block": 1,
198
+ "row": 3616
199
+ },
200
+ {
201
+ "path": "functions/NIfTI_20140122/clip_nii.m",
202
+ "sha256": "c5d7ce136659391033d6de42e7cf01d12af5f27943a18bf50bbc70942635174a",
203
+ "language": "MATLAB",
204
+ "lines": 115,
205
+ "truncated": false,
206
+ "block": 1,
207
+ "row": 3422
208
+ },
209
+ {
210
+ "path": "functions/NIfTI_20140122/collapse_nii_scan.m",
211
+ "sha256": "8c1371a5468f68d55a06752cf67da93a1307326818adc1b389e830a2ae2a28e4",
212
+ "language": "MATLAB",
213
+ "lines": 260,
214
+ "truncated": false,
215
+ "block": 1,
216
+ "row": 3862
217
+ },
218
+ {
219
+ "path": "functions/NIfTI_20140122/expand_nii_scan.m",
220
+ "sha256": "98da523799f5e2c6b76c2ae728ab0828a7d33001e5f774bedd4b866837029661",
221
+ "language": "MATLAB",
222
+ "lines": 48,
223
+ "truncated": false,
224
+ "block": 1,
225
+ "row": 2921
226
+ },
227
+ {
228
+ "path": "functions/NIfTI_20140122/extra_nii_hdr.m",
229
+ "sha256": "51a47fef10297a77df485e0bc4b7a68ba65bc77d8f87b07c9db733dab45914c7",
230
+ "language": "MATLAB",
231
+ "lines": 255,
232
+ "truncated": false,
233
+ "block": 1,
234
+ "row": 3923
235
+ },
236
+ {
237
+ "path": "functions/NIfTI_20140122/flip_lr.m",
238
+ "sha256": "7436e5fed90737c3a3aad7af95634a33f55a00d1bea33d109b985781f6f6a76e",
239
+ "language": "MATLAB",
240
+ "lines": 84,
241
+ "truncated": false,
242
+ "block": 1,
243
+ "row": 3455
244
+ },
245
+ {
246
+ "path": "functions/NIfTI_20140122/get_nii_frame.m",
247
+ "sha256": "d3d1fdf5ce2c107ada30f35fcec6f4a6555ed885a8e5f7917db5e983da081864",
248
+ "language": "MATLAB",
249
+ "lines": 164,
250
+ "truncated": false,
251
+ "block": 1,
252
+ "row": 3590
253
+ },
254
+ {
255
+ "path": "functions/NIfTI_20140122/load_nii.m",
256
+ "sha256": "a97662cb5cefd152253f20831e5e5344347c40c18bad93a529a96dbeadb8a2f7",
257
+ "language": "MATLAB",
258
+ "lines": 198,
259
+ "truncated": false,
260
+ "block": 1,
261
+ "row": 3856
262
+ },
263
+ {
264
+ "path": "functions/NIfTI_20140122/load_nii_ext.m",
265
+ "sha256": "758c12cfae93b7066540f0bd734e8e9dc5ddf68d6c78e873c5061de32b220de3",
266
+ "language": "MATLAB",
267
+ "lines": 207,
268
+ "truncated": false,
269
+ "block": 1,
270
+ "row": 3718
271
+ },
272
+ {
273
+ "path": "functions/NIfTI_20140122/load_nii_hdr.m",
274
+ "sha256": "77993efbb572cb36320aa3c5858a50ca29e066be0437c7e10d113e1b7efb77eb",
275
+ "language": "MATLAB",
276
+ "lines": 280,
277
+ "truncated": false,
278
+ "block": 1,
279
+ "row": 4047
280
+ },
281
+ {
282
+ "path": "functions/NIfTI_20140122/load_nii_img.m",
283
+ "sha256": "c71cd73df908101c760ac03d115a45493060342f9d4ad889636c05467e9178be",
284
+ "language": "MATLAB",
285
+ "lines": 392,
286
+ "truncated": false,
287
+ "block": 1,
288
+ "row": 4118
289
+ },
290
+ {
291
+ "path": "functions/NIfTI_20140122/load_untouch0_nii_hdr.m",
292
+ "sha256": "54d1121e9bed73bcc9b247af74f11f635c9b7e3ccebba39b1b6e315e9cc9e276",
293
+ "language": "MATLAB",
294
+ "lines": 200,
295
+ "truncated": false,
296
+ "block": 1,
297
+ "row": 3933
298
+ },
299
+ {
300
+ "path": "functions/NIfTI_20140122/load_untouch_header_only.m",
301
+ "sha256": "742b5b7fba81d358daa482d6de4536e071a7e84d6181adaf6325fb88196e31a0",
302
+ "language": "MATLAB",
303
+ "lines": 187,
304
+ "truncated": false,
305
+ "block": 1,
306
+ "row": 3881
307
+ },
308
+ {
309
+ "path": "functions/NIfTI_20140122/load_untouch_nii.m",
310
+ "sha256": "9bb8735bc0d07a1cdc8f90aa8be66b95bd7aa1a109cbbb913e670d9552fe081c",
311
+ "language": "MATLAB",
312
+ "lines": 191,
313
+ "truncated": false,
314
+ "block": 1,
315
+ "row": 3807
316
+ },
317
+ {
318
+ "path": "functions/NIfTI_20140122/load_untouch_nii_hdr.m",
319
+ "sha256": "0b427af1a1240404b23202a2f201f6045a9d8ce55ece0c47a47b7104273b89d9",
320
+ "language": "MATLAB",
321
+ "lines": 217,
322
+ "truncated": false,
323
+ "block": 1,
324
+ "row": 3966
325
+ },
326
+ {
327
+ "path": "functions/NIfTI_20140122/load_untouch_nii_img.m",
328
+ "sha256": "5c6583755e2c829f1fdba956bb3a208924d08707724fc85ae8830adc29372f6a",
329
+ "language": "MATLAB",
330
+ "lines": 468,
331
+ "truncated": false,
332
+ "block": 1,
333
+ "row": 4170
334
+ },
335
+ {
336
+ "path": "functions/NIfTI_20140122/make_ana.m",
337
+ "sha256": "02916c2ac38301ee17a076df217bcb8ffb88d2ffa09853bc9e051c5b1bb7f4f4",
338
+ "language": "MATLAB",
339
+ "lines": 210,
340
+ "truncated": false,
341
+ "block": 1,
342
+ "row": 3736
343
+ },
344
+ {
345
+ "path": "functions/NIfTI_20140122/make_nii.m",
346
+ "sha256": "e47478d06561bc95603d7d9a563af5e2134be7009555adc2ba22aad8682888f9",
347
+ "language": "MATLAB",
348
+ "lines": 256,
349
+ "truncated": false,
350
+ "block": 1,
351
+ "row": 3868
352
+ },
353
+ {
354
+ "path": "functions/NIfTI_20140122/mat_into_hdr.m",
355
+ "sha256": "a34acbf773df2b643f43b184a4e7c700df3de4134555a15901c8b800139ed13e",
356
+ "language": "MATLAB",
357
+ "lines": 83,
358
+ "truncated": false,
359
+ "block": 1,
360
+ "row": 3273
361
+ },
362
+ {
363
+ "path": "functions/NIfTI_20140122/pad_nii.m",
364
+ "sha256": "1625b22dc432d7cee54aec0a9a877d8b12a98a4545246ba90ba1044db338a349",
365
+ "language": "MATLAB",
366
+ "lines": 142,
367
+ "truncated": false,
368
+ "block": 1,
369
+ "row": 3499
370
+ },
371
+ {
372
+ "path": "functions/NIfTI_20140122/reslice_nii.m",
373
+ "sha256": "b5ce20593c9a641d5b3d4a1a4ca59228ae62e49ff34dc26e99cdefd2676f6408",
374
+ "language": "MATLAB",
375
+ "lines": 321,
376
+ "truncated": false,
377
+ "block": 1,
378
+ "row": 4041
379
+ },
380
+ {
381
+ "path": "functions/NIfTI_20140122/rri_file_menu.m",
382
+ "sha256": "09d6fb7fdbb34197af5d5476bb49810fa7e1868fad1709e75b605676fa318aac",
383
+ "language": "MATLAB",
384
+ "lines": 179,
385
+ "truncated": false,
386
+ "block": 1,
387
+ "row": 3547
388
+ },
389
+ {
390
+ "path": "functions/NIfTI_20140122/rri_orient.m",
391
+ "sha256": "97e01aca70e2a066b8aae2b5df9ad1cc51c28e8cdc814aa817f0a7e21a30fc98",
392
+ "language": "MATLAB",
393
+ "lines": 106,
394
+ "truncated": false,
395
+ "block": 1,
396
+ "row": 3205
397
+ },
398
+ {
399
+ "path": "functions/NIfTI_20140122/rri_orient_ui.m",
400
+ "sha256": "83a131b066d653507c79678f56e80e300f975d0d72e4fa2208429ed26ff489ec",
401
+ "language": "MATLAB",
402
+ "lines": 251,
403
+ "truncated": false,
404
+ "block": 1,
405
+ "row": 3732
406
+ },
407
+ {
408
+ "path": "functions/NIfTI_20140122/rri_select_file.m",
409
+ "sha256": "b31230d72e957fe356e8db4848f73dede0066c7d49bb711cacee58ff0e05fd6c",
410
+ "language": "MATLAB",
411
+ "lines": 636,
412
+ "truncated": false,
413
+ "block": 1,
414
+ "row": 4202
415
+ },
416
+ {
417
+ "path": "functions/NIfTI_20140122/rri_xhair.m",
418
+ "sha256": "5acd8a38ef88d55052a275b6693f475541180bc2669908e406f2a11f1fcd9367",
419
+ "language": "MATLAB",
420
+ "lines": 92,
421
+ "truncated": false,
422
+ "block": 1,
423
+ "row": 3192
424
+ },
425
+ {
426
+ "path": "functions/NIfTI_20140122/rri_zoom_menu.m",
427
+ "sha256": "212b042031b49965408ee402b7c02ba99e3249609bd3a74e0f5fb2373cba8cd7",
428
+ "language": "MATLAB",
429
+ "lines": 33,
430
+ "truncated": false,
431
+ "block": 1,
432
+ "row": 2655
433
+ },
434
+ {
435
+ "path": "functions/NIfTI_20140122/save_nii.m",
436
+ "sha256": "f0de5ec7eef43af9666ea388d38d3e0142f984a560f8e5f3d74512881fdf2517",
437
+ "language": "MATLAB",
438
+ "lines": 286,
439
+ "truncated": false,
440
+ "block": 1,
441
+ "row": 4024
442
+ },
443
+ {
444
+ "path": "functions/NIfTI_20140122/save_nii_ext.m",
445
+ "sha256": "bbf3bf924caec5943700e1f21918d17c62f44f8404a9b5fc44147cc6e64ad179",
446
+ "language": "MATLAB",
447
+ "lines": 38,
448
+ "truncated": false,
449
+ "block": 1,
450
+ "row": 2775
451
+ },
452
+ {
453
+ "path": "functions/NIfTI_20140122/save_nii_hdr.m",
454
+ "sha256": "d42ed8e7335260f511c09e70de2c16ec9ec02d557bf2286ca2d282bb51e687b6",
455
+ "language": "MATLAB",
456
+ "lines": 227,
457
+ "truncated": false,
458
+ "block": 1,
459
+ "row": 4010
460
+ },
461
+ {
462
+ "path": "functions/NIfTI_20140122/save_untouch0_nii_hdr.m",
463
+ "sha256": "47481bb8aba8f669e5dc3a0d6eadd42f42d6bf26e6bad659b07133ee096f7151",
464
+ "language": "MATLAB",
465
+ "lines": 219,
466
+ "truncated": false,
467
+ "block": 1,
468
+ "row": 3970
469
+ },
470
+ {
471
+ "path": "functions/NIfTI_20140122/save_untouch_header_only.m",
472
+ "sha256": "fb2dfeae79dbc20c7530f404d4b7ee91985b1352c2f234c65cabcb758c4a6945",
473
+ "language": "MATLAB",
474
+ "lines": 71,
475
+ "truncated": false,
476
+ "block": 1,
477
+ "row": 3173
478
+ },
479
+ {
480
+ "path": "functions/NIfTI_20140122/save_untouch_nii.m",
481
+ "sha256": "ee6798c14af873157e321e473f09cd03c2ebe529c76c71e678dd748b75bb6450",
482
+ "language": "MATLAB",
483
+ "lines": 232,
484
+ "truncated": false,
485
+ "block": 1,
486
+ "row": 3843
487
+ },
488
+ {
489
+ "path": "functions/NIfTI_20140122/save_untouch_nii_hdr.m",
490
+ "sha256": "5cd8716c1e0fa1a895b35b32190388143aec53ef47ac56233bdfd0d8c9365a67",
491
+ "language": "MATLAB",
492
+ "lines": 207,
493
+ "truncated": false,
494
+ "block": 1,
495
+ "row": 3965
496
+ },
497
+ {
498
+ "path": "functions/NIfTI_20140122/save_untouch_slice.m",
499
+ "sha256": "0a3ee430cd3a3aa548dea8299dd8c3f04ceeaae534658b1ba5180816349b176f",
500
+ "language": "MATLAB",
501
+ "lines": 580,
502
+ "truncated": false,
503
+ "block": 1,
504
+ "row": 4241
505
+ },
506
+ {
507
+ "path": "functions/NIfTI_20140122/unxform_nii.m",
508
+ "sha256": "3da8a153e109c00281d979ad5cd19ba0d5d65b4b718188b2f906c49552c217cf",
509
+ "language": "MATLAB",
510
+ "lines": 40,
511
+ "truncated": false,
512
+ "block": 1,
513
+ "row": 2876
514
+ },
515
+ {
516
+ "path": "functions/NIfTI_20140122/verify_nii_ext.m",
517
+ "sha256": "f45984d7e583261fe8124e1adb6bdf482b81f73643af3049cdf5d6155bfd6d74",
518
+ "language": "MATLAB",
519
+ "lines": 45,
520
+ "truncated": false,
521
+ "block": 1,
522
+ "row": 3033
523
+ },
524
+ {
525
+ "path": "functions/NIfTI_20140122/view_nii.m",
526
+ "sha256": "a8a634db9cb0aebbd295f60d9e67f87b3030d29862a63f48a2c5958f6d2464ab",
527
+ "language": "MATLAB",
528
+ "lines": 4873,
529
+ "truncated": false,
530
+ "block": 1,
531
+ "row": 4356
532
+ },
533
+ {
534
+ "path": "functions/NIfTI_20140122/view_nii_menu.m",
535
+ "sha256": "fcdd8b46a55fd751b4251140a5af6a93ef1d6527be06f11f9f996a09dad6fb60",
536
+ "language": "MATLAB",
537
+ "lines": 480,
538
+ "truncated": false,
539
+ "block": 1,
540
+ "row": 4165
541
+ },
542
+ {
543
+ "path": "functions/NIfTI_20140122/xform_nii.m",
544
+ "sha256": "9111971fdd93a79059e601d02d092f9878fe7011be4c97295a49243c8f76a2b3",
545
+ "language": "MATLAB",
546
+ "lines": 521,
547
+ "truncated": false,
548
+ "block": 1,
549
+ "row": 4230
550
+ },
551
+ {
552
+ "path": "functions/support_functions/AnalyseAllDatasets.m",
553
+ "sha256": "43141c45834861d5d0e498f5dea7b8349fa8df8596aff6718600be63378bea95",
554
+ "language": "MATLAB",
555
+ "lines": 41,
556
+ "truncated": false,
557
+ "block": 3,
558
+ "row": 11446
559
+ },
560
+ {
561
+ "path": "functions/support_functions/AnalyseAllDatasets_forGUI.m",
562
+ "sha256": "d6a0e3d88d4f7f44f7b3187399aaffca4d9b0e55733f34e13155270e75f73f47",
563
+ "language": "MATLAB",
564
+ "lines": 34,
565
+ "truncated": false,
566
+ "block": 3,
567
+ "row": 11122
568
+ },
569
+ {
570
+ "path": "functions/support_functions/FromParamsToSignal_RicianBiased.m",
571
+ "sha256": "cb08b5e9c0422f17307d7b3ff20f330574b69910eb43292c5b1022ea2bcf9185",
572
+ "language": "MATLAB",
573
+ "lines": 37,
574
+ "truncated": false,
575
+ "block": 3,
576
+ "row": 10436
577
+ },
578
+ {
579
+ "path": "functions/support_functions/Gauss_smoothing_3D.m",
580
+ "sha256": "8c6ea3b379578f2b1ce02c564ce0d8a2ba6b2aa0a57da14e9f354c2484f90456",
581
+ "language": "MATLAB",
582
+ "lines": 22,
583
+ "truncated": false,
584
+ "block": 3,
585
+ "row": 9056
586
+ },
587
+ {
588
+ "path": "functions/support_functions/InitializeSANDIinput.m",
589
+ "sha256": "00fc19124c48a78e89a3ec48ad654696a17376bbc297f80c052d9315be3128da",
590
+ "language": "MATLAB",
591
+ "lines": 37,
592
+ "truncated": false,
593
+ "block": 3,
594
+ "row": 13468
595
+ },
596
+ {
597
+ "path": "functions/support_functions/ProcessAllDatasets.m",
598
+ "sha256": "06c26f432b6bf3ad51efb50a655d9de8d71ce06d3e94563dae4035a776d2d7b8",
599
+ "language": "MATLAB",
600
+ "lines": 47,
601
+ "truncated": false,
602
+ "block": 3,
603
+ "row": 12669
604
+ },
605
+ {
606
+ "path": "functions/support_functions/ProcessAllDatasets_forGUI.m",
607
+ "sha256": "51d8ae4dcde0f7047be6c4fb88cd247e8759c09bbd47f3add11d018eefad3e89",
608
+ "language": "MATLAB",
609
+ "lines": 45,
610
+ "truncated": false,
611
+ "block": 3,
612
+ "row": 12437
613
+ },
614
+ {
615
+ "path": "functions/support_functions/RiceMean.m",
616
+ "sha256": "cecd2274dcad8bd3963c202a8d5ff2856b2f1db2f9134fa7e7e67d268f422836",
617
+ "language": "MATLAB",
618
+ "lines": 24,
619
+ "truncated": false,
620
+ "block": 3,
621
+ "row": 8829
622
+ },
623
+ {
624
+ "path": "functions/support_functions/RicianLogLik.m",
625
+ "sha256": "994ec91d77affe948d457c522b31f0c748cf916b997a052e0e6402ca198eae51",
626
+ "language": "MATLAB",
627
+ "lines": 24,
628
+ "truncated": false,
629
+ "block": 3,
630
+ "row": 9807
631
+ },
632
+ {
633
+ "path": "functions/support_functions/SphericalMeanFromSH.m",
634
+ "sha256": "1c23279b48289c74b1056c45092882188ba7da743b5229fc167dc22dc697c895",
635
+ "language": "MATLAB",
636
+ "lines": 20,
637
+ "truncated": false,
638
+ "block": 3,
639
+ "row": 8656
640
+ },
641
+ {
642
+ "path": "functions/support_functions/TrainMachineLearningModel.m",
643
+ "sha256": "409b3e6ee696f345f372ba6963073081bf8f592be7d9df8dc8d4a12e9337cab2",
644
+ "language": "MATLAB",
645
+ "lines": 26,
646
+ "truncated": false,
647
+ "block": 3,
648
+ "row": 11239
649
+ },
650
+ {
651
+ "path": "functions/support_functions/TrainMachineLearningModel_forGUI.m",
652
+ "sha256": "539616ffd0a9283069d588d782677406951bb33114c4a24dd8bad0288adf2e4a",
653
+ "language": "MATLAB",
654
+ "lines": 22,
655
+ "truncated": false,
656
+ "block": 3,
657
+ "row": 10759
658
+ },
659
+ {
660
+ "path": "functions/support_functions/drchrnd.m",
661
+ "sha256": "3f4e49511256e004e353b87677e7a0893aad6cd12fa0ee665dbdb6e1a9f91ed7",
662
+ "language": "MATLAB",
663
+ "lines": 9,
664
+ "truncated": false,
665
+ "block": 3,
666
+ "row": 8265
667
+ },
668
+ {
669
+ "path": "functions/support_functions/grid_search.m",
670
+ "sha256": "58c56f7d4da77d8348dde1783abfa65a3aa8810343448cd0c0f6716e7df72146",
671
+ "language": "MATLAB",
672
+ "lines": 62,
673
+ "truncated": false,
674
+ "block": 3,
675
+ "row": 10422
676
+ },
677
+ {
678
+ "path": "functions/support_functions/htmlreports/htmlreports/Contents.m",
679
+ "sha256": "f74aaf9afbf2e6c345c40a183725c6d1b1af5459caebf6343c7e47bbd6e42e27",
680
+ "language": "MATLAB",
681
+ "lines": 27,
682
+ "truncated": false,
683
+ "block": 3,
684
+ "row": 9120
685
+ },
686
+ {
687
+ "path": "functions/support_functions/htmlreports/htmlreports/htmlreportdemo.m",
688
+ "sha256": "4b86754ce8ca9b827ad59c629cc1591122bebc52f82242fc17447c1b8a75332d",
689
+ "language": "MATLAB",
690
+ "lines": 18,
691
+ "truncated": false,
692
+ "block": 3,
693
+ "row": 9464
694
+ },
695
+ {
696
+ "path": "functions/support_functions/htmlreports/htmlreports/report_generator.m",
697
+ "sha256": "6a3624af76065bc6c4a58527c3bdbe1bbdb8487742df3eccdd8b7f9c191140cc",
698
+ "language": "MATLAB",
699
+ "lines": 204,
700
+ "truncated": false,
701
+ "block": 3,
702
+ "row": 15305
703
+ },
704
+ {
705
+ "path": "functions/support_functions/investigate_exchange_effectes_NEXI_SANDI_RicianNoise.m",
706
+ "sha256": "9f512fe4d9a443900a760fafef7fcf214f9d1203f571322934ab1b3921727668",
707
+ "language": "MATLAB",
708
+ "lines": 488,
709
+ "truncated": false,
710
+ "block": 3,
711
+ "row": 16652
712
+ },
713
+ {
714
+ "path": "functions/support_functions/investigate_exchange_effectes_NEXI_SANDI_RicianNoise_forGUI.m",
715
+ "sha256": "4f77ecd7cfc873113af68d2ed685cf6bca9e08eaba92d1c0edb1a6a1f12fc463",
716
+ "language": "MATLAB",
717
+ "lines": 425,
718
+ "truncated": false,
719
+ "block": 3,
720
+ "row": 16463
721
+ },
722
+ {
723
+ "path": "functions/support_functions/llsFitSH.m",
724
+ "sha256": "f8d1e95d43cda3a3672e4bd870911dbba895ffcfddd87962c80ddfc35e0311e8",
725
+ "language": "MATLAB",
726
+ "lines": 88,
727
+ "truncated": false,
728
+ "block": 3,
729
+ "row": 13535
730
+ },
731
+ {
732
+ "path": "functions/support_functions/make_direction_average.m",
733
+ "sha256": "4c46e5bc1be5dabb1f9fa39a5a7a26dcbfbff659411e9b4c2806054714cd5a66",
734
+ "language": "MATLAB",
735
+ "lines": 248,
736
+ "truncated": false,
737
+ "block": 3,
738
+ "row": 16177
739
+ },
740
+ {
741
+ "path": "functions/support_functions/make_direction_average_forGUI.m",
742
+ "sha256": "3d9fc1f99dd2578345b0c1ca36da3a9d6116e26438da68d246bb797522cd7a48",
743
+ "language": "MATLAB",
744
+ "lines": 194,
745
+ "truncated": false,
746
+ "block": 3,
747
+ "row": 15604
748
+ },
749
+ {
750
+ "path": "functions/support_functions/my_murdaycotts.m",
751
+ "sha256": "77e3f1d689ac256b3c899016d9373050a875a217ace72e1a5e76326ee062f5dd",
752
+ "language": "MATLAB",
753
+ "lines": 69,
754
+ "truncated": false,
755
+ "block": 3,
756
+ "row": 12692
757
+ },
758
+ {
759
+ "path": "functions/support_functions/normalize_noisemap.m",
760
+ "sha256": "cb5622fff1e17670b3ce40f2e8204b0dffb0e7b07a5592a986b9054bdafa7ebf",
761
+ "language": "MATLAB",
762
+ "lines": 20,
763
+ "truncated": false,
764
+ "block": 3,
765
+ "row": 8916
766
+ },
767
+ {
768
+ "path": "functions/support_functions/simulate_noisy_model_signal.m",
769
+ "sha256": "c8a79e1e597fccf3a4e2d8475969aa94d7998ca3553da72f770e33ba3f29ad8d",
770
+ "language": "MATLAB",
771
+ "lines": 99,
772
+ "truncated": false,
773
+ "block": 3,
774
+ "row": 13635
775
+ },
776
+ {
777
+ "path": "functions/support_functions/src/NEXI.m",
778
+ "sha256": "5ff6b3a6a0958a6c74863ccd7c863e55c34ebf9358f6d8088ed3110cbc647277",
779
+ "language": "MATLAB",
780
+ "lines": 15,
781
+ "truncated": false,
782
+ "block": 3,
783
+ "row": 9818
784
+ },
785
+ {
786
+ "path": "functions/support_functions/src/NEXIS.m",
787
+ "sha256": "8be3b4d1b6d822fc201c581d147be0406b206aabdcad8739e28130667bae230a",
788
+ "language": "MATLAB",
789
+ "lines": 15,
790
+ "truncated": false,
791
+ "block": 3,
792
+ "row": 8646
793
+ },
794
+ {
795
+ "path": "functions/support_functions/src/SANDImodel.m",
796
+ "sha256": "7d5d80793e5eb7886cd601574515d7007eb71710bdccbee566968f8a47448153",
797
+ "language": "MATLAB",
798
+ "lines": 21,
799
+ "truncated": false,
800
+ "block": 3,
801
+ "row": 9635
802
+ },
803
+ {
804
+ "path": "functions/support_functions/src/drchrnd.m",
805
+ "sha256": "3f4e49511256e004e353b87677e7a0893aad6cd12fa0ee665dbdb6e1a9f91ed7",
806
+ "language": "MATLAB",
807
+ "lines": 9,
808
+ "truncated": false,
809
+ "block": 3,
810
+ "row": 8265
811
+ },
812
+ {
813
+ "path": "functions/support_functions/src/my_murdaycotts.m",
814
+ "sha256": "3883963eb3e927f04da715421b3f5e18e08f33b6a110a35807d457a80b924d64",
815
+ "language": "MATLAB",
816
+ "lines": 57,
817
+ "truncated": false,
818
+ "block": 3,
819
+ "row": 12161
820
+ }
821
+ ]
822
+ }
manifests/04/github.com__lbcb-sci__rinalmo.json ADDED
@@ -0,0 +1,363 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/lbcb-sci/rinalmo",
4
+ "url": "https://github.com/lbcb-sci/RiNALMo",
5
+ "host": "github.com",
6
+ "commit": "2c2c5c14a5ae609d8c560a5d9ca32e51e0288955",
7
+ "license": "Apache-2.0",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "c71d239df91726fc519c6eb72d318ec65820627232b2f796219e87dcf35d0ab4",
14
+ "language": "License",
15
+ "lines": 201,
16
+ "truncated": false,
17
+ "block": 1,
18
+ "row": 2216
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "de3d60dd5aedc63c4f401a92876c2d1e053011e008773ce1be38511360463b63",
23
+ "language": "Text",
24
+ "lines": 166,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2635
28
+ },
29
+ {
30
+ "path": "rinalmo/config.py",
31
+ "sha256": "ec6cad89e85161f15d2e1d2b7a1582a7fd7bef650c26656fd5a7278134952b55",
32
+ "language": "Python",
33
+ "lines": 131,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 22175
37
+ },
38
+ {
39
+ "path": "rinalmo/data/alphabet.py",
40
+ "sha256": "78f4b7f231ac3fc0e0f603ae362e012649883ffafce7925afd173a67ec55b97b",
41
+ "language": "Python",
42
+ "lines": 55,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 19737
46
+ },
47
+ {
48
+ "path": "rinalmo/data/constants.py",
49
+ "sha256": "9fca2307b626465a3dcb65ec771b1f0413f404652b2f996a65e39f487c9ff1bc",
50
+ "language": "Python",
51
+ "lines": 19,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 18342
55
+ },
56
+ {
57
+ "path": "rinalmo/data/downstream/expression_level/datamodule.py",
58
+ "sha256": "f0ae1c63d1683a1238861bff82359a4244f3d7e11b242cd787f5578027359a01",
59
+ "language": "Python",
60
+ "lines": 107,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 21941
64
+ },
65
+ {
66
+ "path": "rinalmo/data/downstream/expression_level/dataset.py",
67
+ "sha256": "eef46a006a786a3452c54f86a013a1281beb1585a816f2ca79d478a0a56ca077",
68
+ "language": "Python",
69
+ "lines": 29,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 18621
73
+ },
74
+ {
75
+ "path": "rinalmo/data/downstream/ncrna_classification/datamodule.py",
76
+ "sha256": "50b93cd3fdee8b8d5ebc7b3909523ac3ad91fce0958705816c78e4a50ea991a3",
77
+ "language": "Python",
78
+ "lines": 105,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 21927
82
+ },
83
+ {
84
+ "path": "rinalmo/data/downstream/ncrna_classification/dataset.py",
85
+ "sha256": "f0ed1ae78629ad2d83a684e0d355b49fda24cfcb83b540b6b8fe8e861d6836a2",
86
+ "language": "Python",
87
+ "lines": 30,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 18638
91
+ },
92
+ {
93
+ "path": "rinalmo/data/downstream/ribosome_loading/datamodule.py",
94
+ "sha256": "e3745374b508d248f155879182105abcfabcfe752ce42897c532c68492ca048c",
95
+ "language": "Python",
96
+ "lines": 68,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 20478
100
+ },
101
+ {
102
+ "path": "rinalmo/data/downstream/ribosome_loading/dataset.py",
103
+ "sha256": "c9809fface0d78142a2b93ecc0d5559b07668de73b6c3d2b01efcd14720ee949",
104
+ "language": "Python",
105
+ "lines": 84,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 21174
109
+ },
110
+ {
111
+ "path": "rinalmo/data/downstream/secondary_structure/datamodule.py",
112
+ "sha256": "c00b8cabb6ad96bdbaaf31bef6a7d161092fe0ee5c5f5511f3431d18558c5617",
113
+ "language": "Python",
114
+ "lines": 120,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 22225
118
+ },
119
+ {
120
+ "path": "rinalmo/data/downstream/secondary_structure/dataset.py",
121
+ "sha256": "d45048738de614b820f46c2915cf1939e2dbcfa3a8536b10cee01468650a1051",
122
+ "language": "Python",
123
+ "lines": 43,
124
+ "truncated": false,
125
+ "block": 3,
126
+ "row": 19408
127
+ },
128
+ {
129
+ "path": "rinalmo/data/downstream/splice_site_prediction/datamodule.py",
130
+ "sha256": "9f1bc5d0430d9b9b918eb66f3210c56f49b55185300349f0ded5d622b50e6be7",
131
+ "language": "Python",
132
+ "lines": 207,
133
+ "truncated": false,
134
+ "block": 3,
135
+ "row": 25150
136
+ },
137
+ {
138
+ "path": "rinalmo/data/downstream/splice_site_prediction/dataset.py",
139
+ "sha256": "f8f10343191427bb679eea4841e60661c280c4d304677941871f778fd4005bbb",
140
+ "language": "Python",
141
+ "lines": 71,
142
+ "truncated": false,
143
+ "block": 3,
144
+ "row": 19948
145
+ },
146
+ {
147
+ "path": "rinalmo/data/downstream/translation_efficiency/datamodule.py",
148
+ "sha256": "5a550d3a41f567509149032612f583890a7aaace68007f0977a66e66f2a9f52c",
149
+ "language": "Python",
150
+ "lines": 109,
151
+ "truncated": false,
152
+ "block": 3,
153
+ "row": 21975
154
+ },
155
+ {
156
+ "path": "rinalmo/data/downstream/translation_efficiency/dataset.py",
157
+ "sha256": "d87f1ab847b18d43c042f124ec0e614d7fb24faf4538282493da9f0531f0636f",
158
+ "language": "Python",
159
+ "lines": 29,
160
+ "truncated": false,
161
+ "block": 3,
162
+ "row": 18605
163
+ },
164
+ {
165
+ "path": "rinalmo/model/attention.py",
166
+ "sha256": "1b41e6afc98b9d65052b26ba5fecafc9ba9e9723fc4d67e2542ed774cf53b062",
167
+ "language": "Python",
168
+ "lines": 227,
169
+ "truncated": false,
170
+ "block": 3,
171
+ "row": 25007
172
+ },
173
+ {
174
+ "path": "rinalmo/model/downstream.py",
175
+ "sha256": "deac7b6d20d160e7156238124882407226c4fc9870c8efee96f11cc56f6dee9e",
176
+ "language": "Python",
177
+ "lines": 188,
178
+ "truncated": false,
179
+ "block": 3,
180
+ "row": 23444
181
+ },
182
+ {
183
+ "path": "rinalmo/model/model.py",
184
+ "sha256": "968fdea206848adb0ce641f0a677c57b4f0162d87aaa78a44265ad73e4b04625",
185
+ "language": "Python",
186
+ "lines": 39,
187
+ "truncated": false,
188
+ "block": 3,
189
+ "row": 19551
190
+ },
191
+ {
192
+ "path": "rinalmo/model/modules.py",
193
+ "sha256": "897a1d01d32ec19b856705e60f2ab8121cdf7c6cc4ecf2b9247e9e9d8712a1a6",
194
+ "language": "Python",
195
+ "lines": 150,
196
+ "truncated": false,
197
+ "block": 3,
198
+ "row": 23333
199
+ },
200
+ {
201
+ "path": "rinalmo/model/rope.py",
202
+ "sha256": "07701affc2b3eda20e61742c749f2c08a1c3006cb2d40e9ae02a58b7d45be698",
203
+ "language": "Python",
204
+ "lines": 45,
205
+ "truncated": false,
206
+ "block": 3,
207
+ "row": 19563
208
+ },
209
+ {
210
+ "path": "rinalmo/pretrained.py",
211
+ "sha256": "6ee7e33c7f0392073ecd5cf43765492d2be44683238e8e4d3ecdef8fe1dc2836",
212
+ "language": "Python",
213
+ "lines": 32,
214
+ "truncated": false,
215
+ "block": 3,
216
+ "row": 19292
217
+ },
218
+ {
219
+ "path": "rinalmo/utils/download.py",
220
+ "sha256": "01dc94713d876a093ce26f4f6bc48f28879db4e3fdfc09580aff66d72fd209a2",
221
+ "language": "Python",
222
+ "lines": 351,
223
+ "truncated": false,
224
+ "block": 3,
225
+ "row": 26216
226
+ },
227
+ {
228
+ "path": "rinalmo/utils/finetune_callback.py",
229
+ "sha256": "738e8ed6697b46678549d17a190d3c905c1f7624473cfd6b380fde695db314fe",
230
+ "language": "Python",
231
+ "lines": 55,
232
+ "truncated": false,
233
+ "block": 3,
234
+ "row": 20403
235
+ },
236
+ {
237
+ "path": "rinalmo/utils/finetune_callback_nc.py",
238
+ "sha256": "f45d0375425ad5cf865e7d3c428242ae15e6e8aace113769e182901c62235eff",
239
+ "language": "Python",
240
+ "lines": 93,
241
+ "truncated": false,
242
+ "block": 3,
243
+ "row": 21817
244
+ },
245
+ {
246
+ "path": "rinalmo/utils/ncrna_classification/ExpConfiguration.py",
247
+ "sha256": "b704a7ba76cbc566e6ccb6601189fd00ca9e8477d890a72c28ba8f55a947039e",
248
+ "language": "Python",
249
+ "lines": 24,
250
+ "truncated": false,
251
+ "block": 3,
252
+ "row": 18986
253
+ },
254
+ {
255
+ "path": "rinalmo/utils/ncrna_classification/seqEncoders.py",
256
+ "sha256": "77a0915ce94a72a17d55a9c92f2b6c2f1cf1fe5d959ffe83471c81f61ed7135b",
257
+ "language": "Python",
258
+ "lines": 222,
259
+ "truncated": false,
260
+ "block": 3,
261
+ "row": 24166
262
+ },
263
+ {
264
+ "path": "rinalmo/utils/prepare_mrna_te_and_el_data.py",
265
+ "sha256": "c7efd87da91925daf86e4dfeb1802f5a9628861c32ad2557f3d72899da1b3ac3",
266
+ "language": "Python",
267
+ "lines": 42,
268
+ "truncated": false,
269
+ "block": 3,
270
+ "row": 19680
271
+ },
272
+ {
273
+ "path": "rinalmo/utils/prepare_ncrna_classification_data.py",
274
+ "sha256": "3e45439c90310775ee7c9178187fcdbaefb4ff4ef80dbc94ab0fd840d0cf0387",
275
+ "language": "Python",
276
+ "lines": 339,
277
+ "truncated": false,
278
+ "block": 3,
279
+ "row": 26231
280
+ },
281
+ {
282
+ "path": "rinalmo/utils/scaler.py",
283
+ "sha256": "56a74f2ed55eb87c605f05f625a2d6b422371ce9f75fc1408fac6a6186f0ad5b",
284
+ "language": "Python",
285
+ "lines": 32,
286
+ "truncated": false,
287
+ "block": 3,
288
+ "row": 18985
289
+ },
290
+ {
291
+ "path": "rinalmo/utils/sec_struct.py",
292
+ "sha256": "75c971655e9a12cbbe18d3f75b8377303d0acc1795fab0f0253721ec14b750d0",
293
+ "language": "Python",
294
+ "lines": 214,
295
+ "truncated": false,
296
+ "block": 3,
297
+ "row": 24241
298
+ },
299
+ {
300
+ "path": "rinalmo/utils/splice_site_metrics.py",
301
+ "sha256": "05dfaeae240707dad3957e0dcc776135141d874da4c1d38a0f9869aa5c4c60bf",
302
+ "language": "Python",
303
+ "lines": 21,
304
+ "truncated": false,
305
+ "block": 3,
306
+ "row": 18409
307
+ },
308
+ {
309
+ "path": "train_expression_level.py",
310
+ "sha256": "09c2b6bd3758e3fb4e8f76ee92c58258b6e529c3a8e28c89839adfa16e893a74",
311
+ "language": "Python",
312
+ "lines": 382,
313
+ "truncated": false,
314
+ "block": 3,
315
+ "row": 25997
316
+ },
317
+ {
318
+ "path": "train_ncrna_classification.py",
319
+ "sha256": "04e0308e0910f662c97042414bb479d42f5849247549153dda44b3ffa687aee9",
320
+ "language": "Python",
321
+ "lines": 399,
322
+ "truncated": false,
323
+ "block": 3,
324
+ "row": 26003
325
+ },
326
+ {
327
+ "path": "train_ribosome_loading.py",
328
+ "sha256": "1eb0f9b7f1a6991d8960b98647594a35ebba3c6e509a12359c8fbeafe09f7615",
329
+ "language": "Python",
330
+ "lines": 358,
331
+ "truncated": false,
332
+ "block": 3,
333
+ "row": 25748
334
+ },
335
+ {
336
+ "path": "train_sec_struct_prediction.py",
337
+ "sha256": "0731f2cbf45873edd6564dcb0c98ea1a8726b2cbc88f945f6dfa0d6cd6672e97",
338
+ "language": "Python",
339
+ "lines": 405,
340
+ "truncated": false,
341
+ "block": 3,
342
+ "row": 26375
343
+ },
344
+ {
345
+ "path": "train_splice_site_prediction.py",
346
+ "sha256": "28530e8caf13ebf88c9e2d6e3a6bcc145d374e1e8d1016cced89e6a3fbff1da8",
347
+ "language": "Python",
348
+ "lines": 379,
349
+ "truncated": false,
350
+ "block": 3,
351
+ "row": 25957
352
+ },
353
+ {
354
+ "path": "train_translation_efficiency.py",
355
+ "sha256": "94e27491a43d3360f25bbba3a4844d8e12e53ca7d76969f78a88cb31452efee4",
356
+ "language": "Python",
357
+ "lines": 382,
358
+ "truncated": false,
359
+ "block": 3,
360
+ "row": 26001
361
+ }
362
+ ]
363
+ }
manifests/04/github.com__lynnsoerensen__objecttraining_it_anns.json ADDED
@@ -0,0 +1,237 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/lynnsoerensen/objecttraining_it_anns",
4
+ "url": "https://github.com/lynnsoerensen/ObjectTraining_IT_ANNs",
5
+ "host": "github.com",
6
+ "commit": "85fe071926ac2f44f8ac27428a33ca4a4fd1d4c4",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "Images/utils.py",
13
+ "sha256": "56115353b781ad5b9adfd566b280ecf8ad42d6132d33641f7979aa3471553010",
14
+ "language": "Python",
15
+ "lines": 39,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 19586
19
+ },
20
+ {
21
+ "path": "LICENSE",
22
+ "sha256": "cce21da4ceda90353e061572e49218a6e4cc15318052da32325888cbf2dd716e",
23
+ "language": "License",
24
+ "lines": 21,
25
+ "truncated": false,
26
+ "block": 3,
27
+ "row": 8009
28
+ },
29
+ {
30
+ "path": "README.md",
31
+ "sha256": "9c6ca7e08ea6182a56ffafeb8ccf4db374b4331ac51d562cc5dbae045ac1e645",
32
+ "language": "Text",
33
+ "lines": 60,
34
+ "truncated": false,
35
+ "block": 4,
36
+ "row": 2459
37
+ },
38
+ {
39
+ "path": "analysis/LFI.py",
40
+ "sha256": "0c121c6896dd5fa9eedd1e9301a071a039ea18571f4a8c3f3b96c8aeb2102ac0",
41
+ "language": "Python",
42
+ "lines": 277,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 25762
46
+ },
47
+ {
48
+ "path": "analysis/anatomy.py",
49
+ "sha256": "669566c1d03e237eeb0f2b5460ea7e03fb5df5f276bb9af59b2b4b857684b6ef",
50
+ "language": "Python",
51
+ "lines": 289,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 26935
55
+ },
56
+ {
57
+ "path": "analysis/categoryDecodes.py",
58
+ "sha256": "65dceeeab7d63b0dd8b4b2575033a8546155b69aabdc0d37d7d35c526fde2d1e",
59
+ "language": "Python",
60
+ "lines": 976,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 27982
64
+ },
65
+ {
66
+ "path": "analysis/compute_modelFeatures.py",
67
+ "sha256": "3dea6b2e7240b1c279dfe70d3fcb33eb8382c64134aade68d238c8b6a41865fa",
68
+ "language": "Python",
69
+ "lines": 425,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 26637
73
+ },
74
+ {
75
+ "path": "analysis/consistency.py",
76
+ "sha256": "70728e1158f6e7a19ade21af77df8c691fbbaa7a04f5d1219694d3be83e034a9",
77
+ "language": "Python",
78
+ "lines": 171,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 24968
82
+ },
83
+ {
84
+ "path": "analysis/metrics.py",
85
+ "sha256": "7789b6bc98e7764ba2d6a67dfb7cb564fe84f877bae0ee8b956a2b98b57c91a0",
86
+ "language": "Python",
87
+ "lines": 142,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 22565
91
+ },
92
+ {
93
+ "path": "analysis/orthogonalDecodes.py",
94
+ "sha256": "a3bdb71b4ab95ecb57f224287afbf8b12242416266ea36cfcf6f76c4234081d9",
95
+ "language": "Python",
96
+ "lines": 330,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 26471
100
+ },
101
+ {
102
+ "path": "analysis/paperFigures.py",
103
+ "sha256": "3f7da9a75cab78576ad158c7e1642d5364bda0b276aa9d3a3f27c15dd107def2",
104
+ "language": "Python",
105
+ "lines": 2242,
106
+ "truncated": false,
107
+ "block": 4,
108
+ "row": 97
109
+ },
110
+ {
111
+ "path": "analysis/rsa.py",
112
+ "sha256": "c5eb6b07613add0b6c742158f783bae6a5149c92d42eb914e82d477114187fc6",
113
+ "language": "Python",
114
+ "lines": 370,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 26672
118
+ },
119
+ {
120
+ "path": "analysis/selectivity.py",
121
+ "sha256": "3af701700bcbb0890deac69160c4504e0e100400bb293095ea304c343fdb60f5",
122
+ "language": "Python",
123
+ "lines": 380,
124
+ "truncated": false,
125
+ "block": 3,
126
+ "row": 26895
127
+ },
128
+ {
129
+ "path": "analysis/trainingResults.py",
130
+ "sha256": "d317dd4112accbd5b0f2f52e8e64ce5c27ed06a87e3ef9f61703844ae76e0963",
131
+ "language": "Python",
132
+ "lines": 152,
133
+ "truncated": false,
134
+ "block": 3,
135
+ "row": 23312
136
+ },
137
+ {
138
+ "path": "analysis/utils_behavioralData.py",
139
+ "sha256": "28bf8ca3cc40a3f6b7b3d8f12fe597d66ff3574cce6217dc28871f4238f2bfb1",
140
+ "language": "Python",
141
+ "lines": 197,
142
+ "truncated": false,
143
+ "block": 3,
144
+ "row": 24685
145
+ },
146
+ {
147
+ "path": "analysis/utils_neuralData.py",
148
+ "sha256": "9569c5f4436bb0008ecaafa9d53bf5186ab69e71209469bf371d0a5a164e7afc",
149
+ "language": "Python",
150
+ "lines": 524,
151
+ "truncated": false,
152
+ "block": 3,
153
+ "row": 27298
154
+ },
155
+ {
156
+ "path": "baseModels/layersSpecs.py",
157
+ "sha256": "9e0ad91bedefe1249d373c05af37c1adecc7a7a4cf888d4f512b60c1cd5684bb",
158
+ "language": "Python",
159
+ "lines": 69,
160
+ "truncated": false,
161
+ "block": 3,
162
+ "row": 21383
163
+ },
164
+ {
165
+ "path": "baseModels/models.py",
166
+ "sha256": "91782ef3921f3cb5de8f1f9d5bc26f6ebb1a64234c14f84dfd09612b8e904e66",
167
+ "language": "Python",
168
+ "lines": 140,
169
+ "truncated": false,
170
+ "block": 3,
171
+ "row": 22488
172
+ },
173
+ {
174
+ "path": "baseModels/transforms.py",
175
+ "sha256": "05dd973d9e3583ecf4b9eed1f44af548cfd1a5aefe41f42a56c09580fa909b73",
176
+ "language": "Python",
177
+ "lines": 35,
178
+ "truncated": false,
179
+ "block": 3,
180
+ "row": 19531
181
+ },
182
+ {
183
+ "path": "baseModels/utils.py",
184
+ "sha256": "4f3c308c89fd4306ade09c39ee701bfcf77d2524b4115a0217ecb98bb2f2853b",
185
+ "language": "Python",
186
+ "lines": 133,
187
+ "truncated": false,
188
+ "block": 3,
189
+ "row": 22498
190
+ },
191
+ {
192
+ "path": "main_figures.py",
193
+ "sha256": "9f0712f3ab7ddfa025d66542f1ed5c6cca1702a435ae8d4f6e9a070ed6d453f5",
194
+ "language": "Python",
195
+ "lines": 197,
196
+ "truncated": false,
197
+ "block": 3,
198
+ "row": 24793
199
+ },
200
+ {
201
+ "path": "training/train_wandb_2stepFT.py",
202
+ "sha256": "f650ae83800d7fb647a8c777c7a59f8b652278767f547a735755b63333aecd5b",
203
+ "language": "Python",
204
+ "lines": 261,
205
+ "truncated": false,
206
+ "block": 3,
207
+ "row": 25639
208
+ },
209
+ {
210
+ "path": "training/train_wandb_binaryTask.py",
211
+ "sha256": "d2ef3c810ae050fee761e1aa12343bd66a133a007db2c23deaa3bb455ced97bf",
212
+ "language": "Python",
213
+ "lines": 575,
214
+ "truncated": false,
215
+ "block": 3,
216
+ "row": 27196
217
+ },
218
+ {
219
+ "path": "training/train_wandb_v2.py",
220
+ "sha256": "e0a2e7888fa5fd4fb377d6025b5f0bd4786955d8b680214d1d95d43f2524646d",
221
+ "language": "Python",
222
+ "lines": 200,
223
+ "truncated": false,
224
+ "block": 3,
225
+ "row": 24327
226
+ },
227
+ {
228
+ "path": "training/training_utils.py",
229
+ "sha256": "9bb4ad22b3fe38f9e179b2af999ffdad8d6e759e608cb091782840549372c8ce",
230
+ "language": "Python",
231
+ "lines": 197,
232
+ "truncated": false,
233
+ "block": 3,
234
+ "row": 23651
235
+ }
236
+ ]
237
+ }
manifests/04/github.com__neuropsyol__senda.json ADDED
@@ -0,0 +1,1965 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/neuropsyol/senda",
4
+ "url": "https://github.com/NeuropsyOL/SENDA",
5
+ "host": "github.com",
6
+ "commit": "8c79a39b533a04a82c0e8513931fb2ddb02e72d1",
7
+ "license": "GPL-3.0",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "589ed823e9a84c56feb95ac58e7cf384626b9cbf4fda2a907bc36e103de1bad2",
14
+ "language": "License",
15
+ "lines": 674,
16
+ "truncated": false,
17
+ "block": 1,
18
+ "row": 2232
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "ded288b007a8f9ae2222f09dfeb715f46654af7964519fed9cefc3ce3aec7374",
23
+ "language": "Text",
24
+ "lines": 191,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2648
28
+ },
29
+ {
30
+ "path": "liblsl-Java/src/edu/ucsd/sccn/LSL.java",
31
+ "sha256": "620397dae69aed42321135ac9e14c0c0cde774af784821aac11e40c3051d7bd4",
32
+ "language": "Java",
33
+ "lines": 1119,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 6629
37
+ },
38
+ {
39
+ "path": "liblsl-Java/src/examples/HandleMetaData.java",
40
+ "sha256": "49b0e0fe342ecdfbed6f5d1f54f1a1b24af4aa069dc2a9e87b7fa39de69a0006",
41
+ "language": "Java",
42
+ "lines": 42,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 5713
46
+ },
47
+ {
48
+ "path": "liblsl-Java/src/examples/ReceiveData.java",
49
+ "sha256": "7e97c7534768f39d0bb199eb1da551a8ef5351726c8929693bb23492049fb8dd",
50
+ "language": "Java",
51
+ "lines": 25,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 5487
55
+ },
56
+ {
57
+ "path": "liblsl-Java/src/examples/ReceiveDataInChunks.java",
58
+ "sha256": "6b43b54a6ba682e605a4f1693007d364ee8dd2139f34bd1412e0f3a7f2f2e644",
59
+ "language": "Java",
60
+ "lines": 24,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 5502
64
+ },
65
+ {
66
+ "path": "liblsl-Java/src/examples/ReceiveStringMarkers.java",
67
+ "sha256": "0bbc872c925050fddc7777f5b4304c6d37a283004f178d1cbd13356afef39c48",
68
+ "language": "Java",
69
+ "lines": 16,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 5462
73
+ },
74
+ {
75
+ "path": "liblsl-Java/src/examples/SendData.java",
76
+ "sha256": "2dbd1b3646f0f370c81556a1e313df5cc93eb5a82fe5b87f759c83bec2c75d53",
77
+ "language": "Java",
78
+ "lines": 25,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 5507
82
+ },
83
+ {
84
+ "path": "liblsl-Java/src/examples/SendDataInChunks.java",
85
+ "sha256": "ba9b25d2892a4e603dd521d7e6f3e7ba4dec59f317c8d87d06fe4f5a7cd07a83",
86
+ "language": "Java",
87
+ "lines": 26,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 5528
91
+ },
92
+ {
93
+ "path": "liblsl-Java/src/examples/SendStringMarkers.java",
94
+ "sha256": "2508985860c88fec8fee41e3216f7d667f1995c5aa199becf1246b481cdbe072",
95
+ "language": "Java",
96
+ "lines": 25,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 5514
100
+ },
101
+ {
102
+ "path": "liblsl/docs/conf.py",
103
+ "sha256": "9f9da8c65a8b46ff51b84902177afdad31be6b654f062894169a17f22c4bc2b2",
104
+ "language": "Python",
105
+ "lines": 49,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 19486
109
+ },
110
+ {
111
+ "path": "liblsl/examples/GetAllStreams.cpp",
112
+ "sha256": "f808ec2779bfaf29519ec91baa1c22c0c8aa16411996946e42ece50028247ce9",
113
+ "language": "C++",
114
+ "lines": 61,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 1778
118
+ },
119
+ {
120
+ "path": "liblsl/examples/GetFullinfo.cpp",
121
+ "sha256": "585c6d784deabe20143018d098b5ba4cc710dfac565263364affa1a8cbd07a4c",
122
+ "language": "C++",
123
+ "lines": 47,
124
+ "truncated": false,
125
+ "block": 3,
126
+ "row": 1595
127
+ },
128
+ {
129
+ "path": "liblsl/examples/GetTimeCorrection.cpp",
130
+ "sha256": "0f7237da4914c61a0cebce2e339cbe3eefbb2c7fbd49f8a5937125a998f159d4",
131
+ "language": "C++",
132
+ "lines": 51,
133
+ "truncated": false,
134
+ "block": 3,
135
+ "row": 1694
136
+ },
137
+ {
138
+ "path": "liblsl/examples/HandleMetaData.cpp",
139
+ "sha256": "9dfa10585d6b4bd4aa608a1cd440e09332b66850470f6b366a8fea9362780ae4",
140
+ "language": "C++",
141
+ "lines": 49,
142
+ "truncated": false,
143
+ "block": 3,
144
+ "row": 1754
145
+ },
146
+ {
147
+ "path": "liblsl/examples/HandleMetaDataC.c",
148
+ "sha256": "1b26e5e132691661f042b6c693f864ae9421415d9aa5bdb7dd53b944c660dbdf",
149
+ "language": "C",
150
+ "lines": 60,
151
+ "truncated": false,
152
+ "block": 3,
153
+ "row": 67
154
+ },
155
+ {
156
+ "path": "liblsl/examples/ReceiveData.cpp",
157
+ "sha256": "5ddd804af0ffa9b70838c8b81ad9c88852b5570e98356c14849a8db64e28d89a",
158
+ "language": "C++",
159
+ "lines": 79,
160
+ "truncated": false,
161
+ "block": 3,
162
+ "row": 1928
163
+ },
164
+ {
165
+ "path": "liblsl/examples/ReceiveDataC.c",
166
+ "sha256": "3373f803c1464901c06861f37a701213dad139dc62d565648d9d379177b3ccfd",
167
+ "language": "C",
168
+ "lines": 55,
169
+ "truncated": false,
170
+ "block": 3,
171
+ "row": 55
172
+ },
173
+ {
174
+ "path": "liblsl/examples/ReceiveDataInChunks.cpp",
175
+ "sha256": "6f6cab06e016654ff813eed277ee2886c097156375f0cd79b5623dc432b61c19",
176
+ "language": "C++",
177
+ "lines": 74,
178
+ "truncated": false,
179
+ "block": 3,
180
+ "row": 1953
181
+ },
182
+ {
183
+ "path": "liblsl/examples/ReceiveDataSimple.cpp",
184
+ "sha256": "fc4d2d87aa6913769f9d6690ce4e9af2ce02a3a81b5869c8bffd80c15e8e145c",
185
+ "language": "C++",
186
+ "lines": 26,
187
+ "truncated": false,
188
+ "block": 3,
189
+ "row": 1096
190
+ },
191
+ {
192
+ "path": "liblsl/examples/ReceiveStringMarkers.cpp",
193
+ "sha256": "97f1c90d561d20fc616e148e5eb005fab46d1a81c3a7f89fa9bfbe9acd7d7be4",
194
+ "language": "C++",
195
+ "lines": 39,
196
+ "truncated": false,
197
+ "block": 3,
198
+ "row": 1305
199
+ },
200
+ {
201
+ "path": "liblsl/examples/ReceiveStringMarkersC.c",
202
+ "sha256": "039db681b20e5382681f00d82517a91c7bde33a78b13062b1bf4a22fc875428e",
203
+ "language": "C",
204
+ "lines": 37,
205
+ "truncated": false,
206
+ "block": 3,
207
+ "row": 21
208
+ },
209
+ {
210
+ "path": "liblsl/examples/SendData.cpp",
211
+ "sha256": "d5b378b0abd59a390af7ce39e9a8adaca2530e1d12f0b1e1a5f73a21eb2a1697",
212
+ "language": "C++",
213
+ "lines": 89,
214
+ "truncated": false,
215
+ "block": 3,
216
+ "row": 2185
217
+ },
218
+ {
219
+ "path": "liblsl/examples/SendDataC.c",
220
+ "sha256": "fa357004aef5ba024d647d8fcd7c4514ebc154aaf147a7bf374b5384fd66037c",
221
+ "language": "C",
222
+ "lines": 56,
223
+ "truncated": false,
224
+ "block": 3,
225
+ "row": 65
226
+ },
227
+ {
228
+ "path": "liblsl/examples/SendDataInChunks.cpp",
229
+ "sha256": "277d71c59f829f7f33a8df4159a02cfaae81f76914e51e1be406ca55cf7e4821",
230
+ "language": "C++",
231
+ "lines": 156,
232
+ "truncated": false,
233
+ "block": 3,
234
+ "row": 2747
235
+ },
236
+ {
237
+ "path": "liblsl/examples/SendDataMinimal.cpp",
238
+ "sha256": "0285394eac284d0f4e396c8f4753f40060843d4ae7d56cc67929784ee3598a45",
239
+ "language": "C++",
240
+ "lines": 30,
241
+ "truncated": false,
242
+ "block": 3,
243
+ "row": 1106
244
+ },
245
+ {
246
+ "path": "liblsl/examples/SendDataSimple.cpp",
247
+ "sha256": "2ce488b225cf3324a382370f0e5ba067af2c01a1a869372926f8196211f441b1",
248
+ "language": "C++",
249
+ "lines": 32,
250
+ "truncated": false,
251
+ "block": 3,
252
+ "row": 1166
253
+ },
254
+ {
255
+ "path": "liblsl/examples/SendMultipleStreams.cpp",
256
+ "sha256": "96dc1e6889498001097ae68b04a3882097fd28d7e8dc05680fb50470a0a58aa7",
257
+ "language": "C++",
258
+ "lines": 37,
259
+ "truncated": false,
260
+ "block": 3,
261
+ "row": 1295
262
+ },
263
+ {
264
+ "path": "liblsl/examples/SendStringMarkers.cpp",
265
+ "sha256": "913893c975ae280d9d9a9928ec0fca36f74c1876fd370eb19879fe6e5c4d0174",
266
+ "language": "C++",
267
+ "lines": 44,
268
+ "truncated": false,
269
+ "block": 3,
270
+ "row": 1497
271
+ },
272
+ {
273
+ "path": "liblsl/examples/SendStringMarkersC.c",
274
+ "sha256": "41fd4a47993a42791d1516a501955aa93ab52cb2412539bd268140c6236c5c37",
275
+ "language": "C",
276
+ "lines": 52,
277
+ "truncated": false,
278
+ "block": 3,
279
+ "row": 29
280
+ },
281
+ {
282
+ "path": "liblsl/examples/TestSyncWithoutData.cpp",
283
+ "sha256": "bf73b21517edcc0af31a011eda365d2b02f05d2cd5cb46c6e009c7e32284d51c",
284
+ "language": "C++",
285
+ "lines": 42,
286
+ "truncated": false,
287
+ "block": 3,
288
+ "row": 1506
289
+ },
290
+ {
291
+ "path": "liblsl/include/lsl/common.h",
292
+ "sha256": "e6c31f8b8e50e6a4de10c4bac007116bdc0a76105920d01d597d19361c4848d1",
293
+ "language": "C/C++",
294
+ "lines": 229,
295
+ "truncated": false,
296
+ "block": 3,
297
+ "row": 4244
298
+ },
299
+ {
300
+ "path": "liblsl/include/lsl/inlet.h",
301
+ "sha256": "66bf7869b1e44b6ab0221ae23103a3f8ebeb390092779c2923f4661b8bfabd5a",
302
+ "language": "C/C++",
303
+ "lines": 309,
304
+ "truncated": false,
305
+ "block": 3,
306
+ "row": 4491
307
+ },
308
+ {
309
+ "path": "liblsl/include/lsl/outlet.h",
310
+ "sha256": "699b601452cfb5a63bbf20cad3abcd24b4154f58913107ae16105de272634723",
311
+ "language": "C/C++",
312
+ "lines": 251,
313
+ "truncated": false,
314
+ "block": 3,
315
+ "row": 4472
316
+ },
317
+ {
318
+ "path": "liblsl/include/lsl/resolver.h",
319
+ "sha256": "5d59aee216d114663ae3889b994b7ebd763a9a87114efeb61a34bd876cd932ef",
320
+ "language": "C/C++",
321
+ "lines": 156,
322
+ "truncated": false,
323
+ "block": 3,
324
+ "row": 4285
325
+ },
326
+ {
327
+ "path": "liblsl/include/lsl/streaminfo.h",
328
+ "sha256": "ea1f369035f49cedc5d9a0bd422c4d407346ed9933652754399d6e5dadab395d",
329
+ "language": "C/C++",
330
+ "lines": 196,
331
+ "truncated": false,
332
+ "block": 3,
333
+ "row": 4298
334
+ },
335
+ {
336
+ "path": "liblsl/include/lsl/types.h",
337
+ "sha256": "394ac8258c9af84a17ebe8b78ad4b07e608cc715f28dd6f9b04e0d206bc306d6",
338
+ "language": "C/C++",
339
+ "lines": 60,
340
+ "truncated": false,
341
+ "block": 3,
342
+ "row": 3849
343
+ },
344
+ {
345
+ "path": "liblsl/include/lsl/xml.h",
346
+ "sha256": "4ade06054c008560dd5d18d83c4bd3480bf22919036119ec3cd2e9caf74ed3fc",
347
+ "language": "C/C++",
348
+ "lines": 103,
349
+ "truncated": false,
350
+ "block": 3,
351
+ "row": 3994
352
+ },
353
+ {
354
+ "path": "liblsl/include/lsl_c.h",
355
+ "sha256": "7191f28ec454149aebed65fffa7257733b7574adffa3a5e465fe03a2df835e03",
356
+ "language": "C/C++",
357
+ "lines": 36,
358
+ "truncated": false,
359
+ "block": 3,
360
+ "row": 3551
361
+ },
362
+ {
363
+ "path": "liblsl/include/lsl_cpp.h",
364
+ "sha256": "15373e7363634bfa749caf9f9178a9101ce96dadd28081aa41913e5b18470c7e",
365
+ "language": "C/C++",
366
+ "lines": 1721,
367
+ "truncated": false,
368
+ "block": 3,
369
+ "row": 4615
370
+ },
371
+ {
372
+ "path": "liblsl/lslboost/boost/function/detail/gen_maybe_include.pl",
373
+ "sha256": "cb796d832107def2137d252d1fadce5f62b911e3551c33c858cf6595c86ad169",
374
+ "language": "Perl",
375
+ "lines": 39,
376
+ "truncated": false,
377
+ "block": 3,
378
+ "row": 17315
379
+ },
380
+ {
381
+ "path": "liblsl/lslboost/boost/predef/architecture.h",
382
+ "sha256": "577df6da566e07de25efcb38a7e65c42f5e3cfc175929ea07774ead2cd4609e0",
383
+ "language": "C/C++",
384
+ "lines": 34,
385
+ "truncated": false,
386
+ "block": 3,
387
+ "row": 3584
388
+ },
389
+ {
390
+ "path": "liblsl/lslboost/boost/predef/architecture/alpha.h",
391
+ "sha256": "32bed2d97a90819d2177c78b551bbad09b3039f9977ee7faaa54ee19a0a1cdd5",
392
+ "language": "C/C++",
393
+ "lines": 65,
394
+ "truncated": false,
395
+ "block": 3,
396
+ "row": 3737
397
+ },
398
+ {
399
+ "path": "liblsl/lslboost/boost/predef/architecture/arm.h",
400
+ "sha256": "0835f46db4a6f15c7ccea3633649586969979055780ffbb536a1494605b0d845",
401
+ "language": "C/C++",
402
+ "lines": 144,
403
+ "truncated": false,
404
+ "block": 3,
405
+ "row": 4083
406
+ },
407
+ {
408
+ "path": "liblsl/lslboost/boost/predef/architecture/blackfin.h",
409
+ "sha256": "0f21530d798f3af4e8c90b546757f1762f5c84486c0cc2d6e4f2460be1e2b1d1",
410
+ "language": "C/C++",
411
+ "lines": 52,
412
+ "truncated": false,
413
+ "block": 3,
414
+ "row": 3590
415
+ },
416
+ {
417
+ "path": "liblsl/lslboost/boost/predef/architecture/convex.h",
418
+ "sha256": "d2f4d260fb8c43acbffef244f4232da0988c7747bb5fa57fb6b3663206c5711a",
419
+ "language": "C/C++",
420
+ "lines": 71,
421
+ "truncated": false,
422
+ "block": 3,
423
+ "row": 3804
424
+ },
425
+ {
426
+ "path": "liblsl/lslboost/boost/predef/architecture/e2k.h",
427
+ "sha256": "ceee11b2e273368fabd1718039f7b937e946da294a48f81c887437c902031760",
428
+ "language": "C/C++",
429
+ "lines": 54,
430
+ "truncated": false,
431
+ "block": 3,
432
+ "row": 3581
433
+ },
434
+ {
435
+ "path": "liblsl/lslboost/boost/predef/architecture/ia64.h",
436
+ "sha256": "d789039481e2df78ea05cc88a61e24e04176a093a5ba1b5da3bbdda84c1a3517",
437
+ "language": "C/C++",
438
+ "lines": 55,
439
+ "truncated": false,
440
+ "block": 3,
441
+ "row": 3634
442
+ },
443
+ {
444
+ "path": "liblsl/lslboost/boost/predef/architecture/m68k.h",
445
+ "sha256": "655696a9a24e2b80d1d9f545a5b500ae26c17db6eb7cee9f60a6a748c7355598",
446
+ "language": "C/C++",
447
+ "lines": 88,
448
+ "truncated": false,
449
+ "block": 3,
450
+ "row": 3882
451
+ },
452
+ {
453
+ "path": "liblsl/lslboost/boost/predef/architecture/mips.h",
454
+ "sha256": "5a7841f9888542fd7e124a49c7dc9680b2620d2e33adc410c2c9051098355069",
455
+ "language": "C/C++",
456
+ "lines": 84,
457
+ "truncated": false,
458
+ "block": 3,
459
+ "row": 3863
460
+ },
461
+ {
462
+ "path": "liblsl/lslboost/boost/predef/architecture/parisc.h",
463
+ "sha256": "96d014c92c6b0a3d48f810204afe9c7370c45b625d50bf79f2634a438bd68d6b",
464
+ "language": "C/C++",
465
+ "lines": 70,
466
+ "truncated": false,
467
+ "block": 3,
468
+ "row": 3805
469
+ },
470
+ {
471
+ "path": "liblsl/lslboost/boost/predef/architecture/ppc.h",
472
+ "sha256": "c9dbf5ad0cfd39e3b7d7061608af6fe07bdb2e1bf6bdd23648beef6c07856a18",
473
+ "language": "C/C++",
474
+ "lines": 124,
475
+ "truncated": false,
476
+ "block": 3,
477
+ "row": 3979
478
+ },
479
+ {
480
+ "path": "liblsl/lslboost/boost/predef/architecture/ptx.h",
481
+ "sha256": "83cb4e6f5bd9d19a83f1bf81037b50faa93f58f1dacd77321e11fb6ac97982cd",
482
+ "language": "C/C++",
483
+ "lines": 50,
484
+ "truncated": false,
485
+ "block": 3,
486
+ "row": 3545
487
+ },
488
+ {
489
+ "path": "liblsl/lslboost/boost/predef/architecture/pyramid.h",
490
+ "sha256": "ffa42475fc756412f405e8ae0033620968fb8e451e3482d6f25afa8c8b5af0e7",
491
+ "language": "C/C++",
492
+ "lines": 48,
493
+ "truncated": false,
494
+ "block": 3,
495
+ "row": 3531
496
+ },
497
+ {
498
+ "path": "liblsl/lslboost/boost/predef/architecture/riscv.h",
499
+ "sha256": "d99105bb5c13cfbeba54ec679395ed36306a734e2ecce21383a74d7eaf03fa78",
500
+ "language": "C/C++",
501
+ "lines": 48,
502
+ "truncated": false,
503
+ "block": 3,
504
+ "row": 3534
505
+ },
506
+ {
507
+ "path": "liblsl/lslboost/boost/predef/architecture/rs6k.h",
508
+ "sha256": "5c5703cb5bad0fd30646cdcc7e059a6caa14de4ab73d0c8031b64e848ab5beb1",
509
+ "language": "C/C++",
510
+ "lines": 67,
511
+ "truncated": false,
512
+ "block": 3,
513
+ "row": 3708
514
+ },
515
+ {
516
+ "path": "liblsl/lslboost/boost/predef/architecture/sparc.h",
517
+ "sha256": "682ebf83ca4512ad90ca03e553edde16f19f3fdca41c2dfab14d790b5e604801",
518
+ "language": "C/C++",
519
+ "lines": 67,
520
+ "truncated": false,
521
+ "block": 3,
522
+ "row": 3748
523
+ },
524
+ {
525
+ "path": "liblsl/lslboost/boost/predef/architecture/superh.h",
526
+ "sha256": "6403d884a9710d001b4ddcc3593c9884bf0dc50d764c8615f2fda90c4143245a",
527
+ "language": "C/C++",
528
+ "lines": 81,
529
+ "truncated": false,
530
+ "block": 3,
531
+ "row": 3840
532
+ },
533
+ {
534
+ "path": "liblsl/lslboost/boost/predef/architecture/sys370.h",
535
+ "sha256": "a04e03d707b136a4f6171356f325b45252974a935c4ae3da19fab790a891c4cd",
536
+ "language": "C/C++",
537
+ "lines": 49,
538
+ "truncated": false,
539
+ "block": 3,
540
+ "row": 3559
541
+ },
542
+ {
543
+ "path": "liblsl/lslboost/boost/predef/architecture/sys390.h",
544
+ "sha256": "bf130dfb501c22e2f3430f8ca2ffacd26964dbab536f61fbb47e1fc9bde677f6",
545
+ "language": "C/C++",
546
+ "lines": 49,
547
+ "truncated": false,
548
+ "block": 3,
549
+ "row": 3558
550
+ },
551
+ {
552
+ "path": "liblsl/lslboost/boost/predef/architecture/x86.h",
553
+ "sha256": "8ee091edb9058eb7f44a5c0b9a174bddd2434754b9fa9781b28ebabe240cf082",
554
+ "language": "C/C++",
555
+ "lines": 38,
556
+ "truncated": false,
557
+ "block": 3,
558
+ "row": 3494
559
+ },
560
+ {
561
+ "path": "liblsl/lslboost/boost/predef/architecture/x86/32.h",
562
+ "sha256": "23011919d1168aaf61c1f76b373a93f82085361609c6df921c35867c60e1f269",
563
+ "language": "C/C++",
564
+ "lines": 93,
565
+ "truncated": false,
566
+ "block": 3,
567
+ "row": 3902
568
+ },
569
+ {
570
+ "path": "liblsl/lslboost/boost/predef/architecture/x86/64.h",
571
+ "sha256": "d13d46c4c064ef9f13b765383a45a6b4adaa18d8472410efc444e44a1ff7a7fd",
572
+ "language": "C/C++",
573
+ "lines": 56,
574
+ "truncated": false,
575
+ "block": 3,
576
+ "row": 3638
577
+ },
578
+ {
579
+ "path": "liblsl/lslboost/boost/predef/architecture/z.h",
580
+ "sha256": "f990aec262fa78ee04746b90aafff3cfd8408fe90e5c1af71cd5ae67bbafadea",
581
+ "language": "C/C++",
582
+ "lines": 48,
583
+ "truncated": false,
584
+ "block": 3,
585
+ "row": 3532
586
+ },
587
+ {
588
+ "path": "liblsl/lslboost/boost/predef/detail/_cassert.h",
589
+ "sha256": "688d791806004c3f334cb94fcdb604811da4647b18eb50159cd0394274b567c2",
590
+ "language": "C/C++",
591
+ "lines": 17,
592
+ "truncated": false,
593
+ "block": 3,
594
+ "row": 3385
595
+ },
596
+ {
597
+ "path": "liblsl/lslboost/boost/predef/detail/os_detected.h",
598
+ "sha256": "4b575705f932b165c9282867d283df29afc6f9e5d17b79f1250964e9d16f8bff",
599
+ "language": "C/C++",
600
+ "lines": 10,
601
+ "truncated": false,
602
+ "block": 3,
603
+ "row": 3361
604
+ },
605
+ {
606
+ "path": "liblsl/lslboost/boost/predef/detail/platform_detected.h",
607
+ "sha256": "c173711895acaa0f30bc6952c4b2643b65f34d5f578c9b394b5195ff59d4779c",
608
+ "language": "C/C++",
609
+ "lines": 10,
610
+ "truncated": false,
611
+ "block": 3,
612
+ "row": 3363
613
+ },
614
+ {
615
+ "path": "liblsl/lslboost/boost/predef/detail/test.h",
616
+ "sha256": "4a4b5be3b09fc4e81da4734ca6a604ba3528d479874bc5f0f2d4c235fa003a97",
617
+ "language": "C/C++",
618
+ "lines": 17,
619
+ "truncated": false,
620
+ "block": 3,
621
+ "row": 3391
622
+ },
623
+ {
624
+ "path": "liblsl/lslboost/boost/predef/library/c/_prefix.h",
625
+ "sha256": "6cfe353310a9f9db1ae4f55018358ceeb0c6b013c5cfe7b68c639d43dd910709",
626
+ "language": "C/C++",
627
+ "lines": 13,
628
+ "truncated": false,
629
+ "block": 3,
630
+ "row": 3376
631
+ },
632
+ {
633
+ "path": "liblsl/lslboost/boost/predef/library/c/gnu.h",
634
+ "sha256": "daee5122dc6d530a702eb7071797f25532732e54068634d20bafa21fa30d2795",
635
+ "language": "C/C++",
636
+ "lines": 62,
637
+ "truncated": false,
638
+ "block": 3,
639
+ "row": 3676
640
+ },
641
+ {
642
+ "path": "liblsl/lslboost/boost/predef/make.h",
643
+ "sha256": "328a6b7ee9d4f7a3c3ef2c72f829b1712f5ead60ef9fa1e8fc00de190879d516",
644
+ "language": "C/C++",
645
+ "lines": 163,
646
+ "truncated": false,
647
+ "block": 3,
648
+ "row": 4172
649
+ },
650
+ {
651
+ "path": "liblsl/lslboost/boost/predef/os/bsd.h",
652
+ "sha256": "e4f0b4f8d5e075487309f1572c1ff0845bf2bb198e3833ea3150b1bcb515f971",
653
+ "language": "C/C++",
654
+ "lines": 102,
655
+ "truncated": false,
656
+ "block": 3,
657
+ "row": 3926
658
+ },
659
+ {
660
+ "path": "liblsl/lslboost/boost/predef/os/bsd/bsdi.h",
661
+ "sha256": "44d0aa5486509f079447739280e6ec942150eb9af62d39625a2c65145d6a758d",
662
+ "language": "C/C++",
663
+ "lines": 50,
664
+ "truncated": false,
665
+ "block": 3,
666
+ "row": 3570
667
+ },
668
+ {
669
+ "path": "liblsl/lslboost/boost/predef/os/bsd/dragonfly.h",
670
+ "sha256": "d04a132e3fb951b1ea61bae2bc5b2bda33d4d627cb4d9d29a81d62f72402fe33",
671
+ "language": "C/C++",
672
+ "lines": 52,
673
+ "truncated": false,
674
+ "block": 3,
675
+ "row": 3606
676
+ },
677
+ {
678
+ "path": "liblsl/lslboost/boost/predef/os/bsd/free.h",
679
+ "sha256": "c58a5df6fe802f4ba4e170123e139045dcdb92c8ccea164399dfddef4578721e",
680
+ "language": "C/C++",
681
+ "lines": 69,
682
+ "truncated": false,
683
+ "block": 3,
684
+ "row": 3766
685
+ },
686
+ {
687
+ "path": "liblsl/lslboost/boost/predef/os/bsd/net.h",
688
+ "sha256": "26ec0427bab036fe14b4a9c5b4248b22fcbde4f58269225bb6f41eb9141885d0",
689
+ "language": "C/C++",
690
+ "lines": 86,
691
+ "truncated": false,
692
+ "block": 3,
693
+ "row": 3872
694
+ },
695
+ {
696
+ "path": "liblsl/lslboost/boost/predef/os/bsd/open.h",
697
+ "sha256": "d12be3d971b16a4e7f99f19dfa4429e4a6600541885da3771042ae2d69059634",
698
+ "language": "C/C++",
699
+ "lines": 253,
700
+ "truncated": false,
701
+ "block": 3,
702
+ "row": 4290
703
+ },
704
+ {
705
+ "path": "liblsl/lslboost/boost/predef/os/ios.h",
706
+ "sha256": "ab5295eecc3c13630d9f3faf3567ef2a48101206fb00dfa466498c2e7a00ab3c",
707
+ "language": "C/C++",
708
+ "lines": 52,
709
+ "truncated": false,
710
+ "block": 3,
711
+ "row": 3619
712
+ },
713
+ {
714
+ "path": "liblsl/lslboost/boost/predef/os/macos.h",
715
+ "sha256": "df73b14e50d4a502ff4f98b57122589fb3b7c1384712122317aa5aaba72ecb26",
716
+ "language": "C/C++",
717
+ "lines": 66,
718
+ "truncated": false,
719
+ "block": 3,
720
+ "row": 3753
721
+ },
722
+ {
723
+ "path": "liblsl/lslboost/boost/predef/os/windows.h",
724
+ "sha256": "a458debc523142f8b2c8e3e2910e358b766f7206c3234d0566a05931be90a016",
725
+ "language": "C/C++",
726
+ "lines": 52,
727
+ "truncated": false,
728
+ "block": 3,
729
+ "row": 3613
730
+ },
731
+ {
732
+ "path": "liblsl/lslboost/boost/predef/other/endian.h",
733
+ "sha256": "e53ccc69d15cbf4742823e8b541e1bbfd7f618243821941708818ad23cee0d08",
734
+ "language": "C/C++",
735
+ "lines": 201,
736
+ "truncated": false,
737
+ "block": 3,
738
+ "row": 4217
739
+ },
740
+ {
741
+ "path": "liblsl/lslboost/boost/predef/platform/android.h",
742
+ "sha256": "8361c3f4e318fbfcdf4e7794d34e3dec006f03926d6fc48e44c584084b9fa128",
743
+ "language": "C/C++",
744
+ "lines": 44,
745
+ "truncated": false,
746
+ "block": 3,
747
+ "row": 3518
748
+ },
749
+ {
750
+ "path": "liblsl/lslboost/boost/predef/version_number.h",
751
+ "sha256": "e30fb59f4e04d32139df8b2dcda4e8c0d857190806225e4ee3e20381535e6e37",
752
+ "language": "C/C++",
753
+ "lines": 74,
754
+ "truncated": false,
755
+ "block": 3,
756
+ "row": 3829
757
+ },
758
+ {
759
+ "path": "liblsl/lslboost/libs/serialization/src/archive_exception.cpp",
760
+ "sha256": "0365ef78e37564466a149646a909fcaf4d24a0bf45a600c33983ed7395cb8564",
761
+ "language": "C++",
762
+ "lines": 154,
763
+ "truncated": false,
764
+ "block": 3,
765
+ "row": 2437
766
+ },
767
+ {
768
+ "path": "liblsl/lslboost/libs/serialization/src/basic_archive.cpp",
769
+ "sha256": "b73aee7adfef7a29bf66c0b8052c3c1c017cd64b79baf0ee884ba02cb75c058c",
770
+ "language": "C++",
771
+ "lines": 94,
772
+ "truncated": false,
773
+ "block": 3,
774
+ "row": 2232
775
+ },
776
+ {
777
+ "path": "liblsl/lslboost/libs/serialization/src/basic_iarchive.cpp",
778
+ "sha256": "7e13ecebb395786eefcb8828c3437ee9362055315a1a3e9ac23b672bf38e9de6",
779
+ "language": "C++",
780
+ "lines": 601,
781
+ "truncated": false,
782
+ "block": 3,
783
+ "row": 3179
784
+ },
785
+ {
786
+ "path": "liblsl/lslboost/libs/serialization/src/basic_iserializer.cpp",
787
+ "sha256": "0a95d01fddf688efc2e3aef532cebf47c649346b2f077b9766b1d21dd480c707",
788
+ "language": "C++",
789
+ "lines": 34,
790
+ "truncated": false,
791
+ "block": 3,
792
+ "row": 1137
793
+ },
794
+ {
795
+ "path": "liblsl/lslboost/libs/serialization/src/basic_oarchive.cpp",
796
+ "sha256": "b737f60d441ebdbdcbb526b76d934090a2b6ba4074f27ae19924d81dcb948640",
797
+ "language": "C++",
798
+ "lines": 469,
799
+ "truncated": false,
800
+ "block": 3,
801
+ "row": 3137
802
+ },
803
+ {
804
+ "path": "liblsl/lslboost/libs/serialization/src/basic_oserializer.cpp",
805
+ "sha256": "5c685258dc5d7c2beee1eb9561566246d46927579e108323d4d2c79903f4d8eb",
806
+ "language": "C++",
807
+ "lines": 34,
808
+ "truncated": false,
809
+ "block": 3,
810
+ "row": 1141
811
+ },
812
+ {
813
+ "path": "liblsl/lslboost/libs/serialization/src/basic_pointer_iserializer.cpp",
814
+ "sha256": "73598f3b775401f29712b08ffa34cd066a8560fb614e6348c2489ebd6b1fbbd0",
815
+ "language": "C++",
816
+ "lines": 31,
817
+ "truncated": false,
818
+ "block": 3,
819
+ "row": 1140
820
+ },
821
+ {
822
+ "path": "liblsl/lslboost/libs/serialization/src/basic_pointer_oserializer.cpp",
823
+ "sha256": "6a324276f57440dd95cc61278b001abb4bb27b33ada8853f8058767d0e04cc78",
824
+ "language": "C++",
825
+ "lines": 31,
826
+ "truncated": false,
827
+ "block": 3,
828
+ "row": 1139
829
+ },
830
+ {
831
+ "path": "liblsl/lslboost/libs/serialization/src/basic_serializer_map.cpp",
832
+ "sha256": "7e5b3c6e041a666249c0b74ae128f13cc9825eb5b2a55c27141760f0c3c6951b",
833
+ "language": "C++",
834
+ "lines": 112,
835
+ "truncated": false,
836
+ "block": 3,
837
+ "row": 2267
838
+ },
839
+ {
840
+ "path": "liblsl/lslboost/libs/serialization/src/basic_text_iprimitive.cpp",
841
+ "sha256": "5a55ced60377e4ba41dfd39b14f2d93d1df47204feb921dca18c5c6d54b8ec18",
842
+ "language": "C++",
843
+ "lines": 29,
844
+ "truncated": false,
845
+ "block": 3,
846
+ "row": 1147
847
+ },
848
+ {
849
+ "path": "liblsl/lslboost/libs/serialization/src/basic_text_oprimitive.cpp",
850
+ "sha256": "258e2153fe1fbbaef0c0f765d7c873266b4eec62a6f831a54d51d27e92181f0e",
851
+ "language": "C++",
852
+ "lines": 29,
853
+ "truncated": false,
854
+ "block": 3,
855
+ "row": 1146
856
+ },
857
+ {
858
+ "path": "liblsl/lslboost/libs/serialization/src/basic_text_wiprimitive.cpp",
859
+ "sha256": "cc1e98f6675504c1d89df9dc177bef85424cf484cf09aee61ad22363b18f6335",
860
+ "language": "C++",
861
+ "lines": 36,
862
+ "truncated": false,
863
+ "block": 3,
864
+ "row": 1208
865
+ },
866
+ {
867
+ "path": "liblsl/lslboost/libs/serialization/src/basic_text_woprimitive.cpp",
868
+ "sha256": "aa97124cf38023db4af241ff2826407ef0a8d845e8f2630db74818ff4414c3c2",
869
+ "language": "C++",
870
+ "lines": 36,
871
+ "truncated": false,
872
+ "block": 3,
873
+ "row": 1207
874
+ },
875
+ {
876
+ "path": "liblsl/lslboost/libs/serialization/src/basic_xml_archive.cpp",
877
+ "sha256": "8b6b2dd93bef8b228732bc5dc3b702818b976e302e05a4be6b24510c9ba62b9e",
878
+ "language": "C++",
879
+ "lines": 52,
880
+ "truncated": false,
881
+ "block": 3,
882
+ "row": 1475
883
+ },
884
+ {
885
+ "path": "liblsl/lslboost/libs/serialization/src/binary_iarchive.cpp",
886
+ "sha256": "054b4c30e6bea74e8c8c144d463db3958740153059bca35f7725ca90998fd279",
887
+ "language": "C++",
888
+ "lines": 40,
889
+ "truncated": false,
890
+ "block": 3,
891
+ "row": 1408
892
+ },
893
+ {
894
+ "path": "liblsl/lslboost/libs/serialization/src/binary_oarchive.cpp",
895
+ "sha256": "2d33dee2dbbf19a150d3c18f167194a1a4901e17ddf067de13f1ab9af7353124",
896
+ "language": "C++",
897
+ "lines": 40,
898
+ "truncated": false,
899
+ "block": 3,
900
+ "row": 1413
901
+ },
902
+ {
903
+ "path": "liblsl/lslboost/libs/serialization/src/binary_wiarchive.cpp",
904
+ "sha256": "37e0fffeaed293c651df77b268ffb690bc4d65808f2abc988dc90e21aacfce97",
905
+ "language": "C++",
906
+ "lines": 47,
907
+ "truncated": false,
908
+ "block": 3,
909
+ "row": 1499
910
+ },
911
+ {
912
+ "path": "liblsl/lslboost/libs/serialization/src/binary_woarchive.cpp",
913
+ "sha256": "ee08a5d240bcfdb23f4f9227f47f2174c74d304ef7a71a2a9df81cb237aae713",
914
+ "language": "C++",
915
+ "lines": 44,
916
+ "truncated": false,
917
+ "block": 3,
918
+ "row": 1423
919
+ },
920
+ {
921
+ "path": "liblsl/lslboost/libs/serialization/src/codecvt_null.cpp",
922
+ "sha256": "31b38b705640373056e74c92387aa590614a230337acc8980caf43c43386cee1",
923
+ "language": "C++",
924
+ "lines": 91,
925
+ "truncated": false,
926
+ "block": 3,
927
+ "row": 2106
928
+ },
929
+ {
930
+ "path": "liblsl/lslboost/libs/serialization/src/extended_type_info.cpp",
931
+ "sha256": "91e3b5c012a3c48a2f5af2aae39603cd84c97f2116d0cb2efe14ed16278fb0e4",
932
+ "language": "C++",
933
+ "lines": 195,
934
+ "truncated": false,
935
+ "block": 3,
936
+ "row": 2623
937
+ },
938
+ {
939
+ "path": "liblsl/lslboost/libs/serialization/src/extended_type_info_no_rtti.cpp",
940
+ "sha256": "d2ee3c731c87fd7bb4b74cc1c75630a8ba88c565216c6e1bf0208e2befc99686",
941
+ "language": "C++",
942
+ "lines": 89,
943
+ "truncated": false,
944
+ "block": 3,
945
+ "row": 2094
946
+ },
947
+ {
948
+ "path": "liblsl/lslboost/libs/serialization/src/extended_type_info_typeid.cpp",
949
+ "sha256": "685a15baba6ea265ec53b3bcbec904b8e755e2cbc9403d61697474cdb17aee97",
950
+ "language": "C++",
951
+ "lines": 167,
952
+ "truncated": false,
953
+ "block": 3,
954
+ "row": 2499
955
+ },
956
+ {
957
+ "path": "liblsl/lslboost/libs/serialization/src/polymorphic_binary_iarchive.cpp",
958
+ "sha256": "d79b36d6fe5be66c5db9afdf44f6e2f1112659eb15cc398a6b37f559f0ffab33",
959
+ "language": "C++",
960
+ "lines": 30,
961
+ "truncated": false,
962
+ "block": 3,
963
+ "row": 1160
964
+ },
965
+ {
966
+ "path": "liblsl/lslboost/libs/serialization/src/polymorphic_binary_oarchive.cpp",
967
+ "sha256": "c6856dac3e2e4f9a3ced43c76cbd4e4576a00e158db0260e5f0019dc5bf7a192",
968
+ "language": "C++",
969
+ "lines": 30,
970
+ "truncated": false,
971
+ "block": 3,
972
+ "row": 1170
973
+ },
974
+ {
975
+ "path": "liblsl/lslboost/libs/serialization/src/polymorphic_iarchive.cpp",
976
+ "sha256": "61950305bf5a70f4283fed3c082fbf3f9bbeba77ba26e07ac176b9a8c52ac2c2",
977
+ "language": "C++",
978
+ "lines": 30,
979
+ "truncated": false,
980
+ "block": 3,
981
+ "row": 1145
982
+ },
983
+ {
984
+ "path": "liblsl/lslboost/libs/serialization/src/polymorphic_oarchive.cpp",
985
+ "sha256": "166271a5f6590424a8acb852595e4603ca0fb2af35dae9b9caf2e777756476fc",
986
+ "language": "C++",
987
+ "lines": 30,
988
+ "truncated": false,
989
+ "block": 3,
990
+ "row": 1144
991
+ },
992
+ {
993
+ "path": "liblsl/lslboost/libs/serialization/src/polymorphic_text_iarchive.cpp",
994
+ "sha256": "7abc033080830487e7cb2c07977cf5d93088a5e8b3b88236e7f797dbc82f5787",
995
+ "language": "C++",
996
+ "lines": 30,
997
+ "truncated": false,
998
+ "block": 3,
999
+ "row": 1155
1000
+ },
1001
+ {
1002
+ "path": "liblsl/lslboost/libs/serialization/src/polymorphic_text_oarchive.cpp",
1003
+ "sha256": "fee713b66cca5f3feef1a9cdc9142e885d35d14c4b8c2da2cc9eb9eb9622d5f7",
1004
+ "language": "C++",
1005
+ "lines": 30,
1006
+ "truncated": false,
1007
+ "block": 3,
1008
+ "row": 1164
1009
+ },
1010
+ {
1011
+ "path": "liblsl/lslboost/libs/serialization/src/polymorphic_text_wiarchive.cpp",
1012
+ "sha256": "4ebbe78237c832bc0af73d29adc58518528da388e9d25d6b2077ed6bb022e087",
1013
+ "language": "C++",
1014
+ "lines": 30,
1015
+ "truncated": false,
1016
+ "block": 3,
1017
+ "row": 1158
1018
+ },
1019
+ {
1020
+ "path": "liblsl/lslboost/libs/serialization/src/polymorphic_text_woarchive.cpp",
1021
+ "sha256": "afd8bd2f43c7f0b432b668e5c762b00a3dfc63d613547674a9abd537786a53ba",
1022
+ "language": "C++",
1023
+ "lines": 30,
1024
+ "truncated": false,
1025
+ "block": 3,
1026
+ "row": 1167
1027
+ },
1028
+ {
1029
+ "path": "liblsl/lslboost/libs/serialization/src/polymorphic_xml_iarchive.cpp",
1030
+ "sha256": "aae8c398bec2bcc1a08db7db17fce1214d75b42c55c9fb2f419cfa9a7e501bd0",
1031
+ "language": "C++",
1032
+ "lines": 30,
1033
+ "truncated": false,
1034
+ "block": 3,
1035
+ "row": 1151
1036
+ },
1037
+ {
1038
+ "path": "liblsl/lslboost/libs/serialization/src/polymorphic_xml_oarchive.cpp",
1039
+ "sha256": "f64574dbd66c955ed3803f3fc234e32dd64f09a1499aecc5fb0760cbf319691f",
1040
+ "language": "C++",
1041
+ "lines": 30,
1042
+ "truncated": false,
1043
+ "block": 3,
1044
+ "row": 1159
1045
+ },
1046
+ {
1047
+ "path": "liblsl/lslboost/libs/serialization/src/polymorphic_xml_wiarchive.cpp",
1048
+ "sha256": "69b2e1d45791e5456c4317d4e45d8402bce42c06a3b08ba265f89c6a474e75df",
1049
+ "language": "C++",
1050
+ "lines": 30,
1051
+ "truncated": false,
1052
+ "block": 3,
1053
+ "row": 1154
1054
+ },
1055
+ {
1056
+ "path": "liblsl/lslboost/libs/serialization/src/polymorphic_xml_woarchive.cpp",
1057
+ "sha256": "1c3b394be71c1a3c02e67d1789a9c850f0321bb1ab3adab8232eb58ac5138a39",
1058
+ "language": "C++",
1059
+ "lines": 30,
1060
+ "truncated": false,
1061
+ "block": 3,
1062
+ "row": 1162
1063
+ },
1064
+ {
1065
+ "path": "liblsl/lslboost/libs/serialization/src/stl_port.cpp",
1066
+ "sha256": "1ecf799dcc6f3d6a9a1b4b0c629a4810edbe144f9e1032970e6041682e5b7bf1",
1067
+ "language": "C++",
1068
+ "lines": 42,
1069
+ "truncated": false,
1070
+ "block": 3,
1071
+ "row": 1237
1072
+ },
1073
+ {
1074
+ "path": "liblsl/lslboost/libs/serialization/src/text_iarchive.cpp",
1075
+ "sha256": "eae953127019eb0e23c6ab581a0728dea9fad0216ab1deab871932cacd7bc213",
1076
+ "language": "C++",
1077
+ "lines": 33,
1078
+ "truncated": false,
1079
+ "block": 3,
1080
+ "row": 1333
1081
+ },
1082
+ {
1083
+ "path": "liblsl/lslboost/libs/serialization/src/text_oarchive.cpp",
1084
+ "sha256": "eb57ecf3231ebc931d4e36e073711c9f02d2e9133eb83e0f01dc0104911e83d6",
1085
+ "language": "C++",
1086
+ "lines": 34,
1087
+ "truncated": false,
1088
+ "block": 3,
1089
+ "row": 1373
1090
+ },
1091
+ {
1092
+ "path": "liblsl/lslboost/libs/serialization/src/text_wiarchive.cpp",
1093
+ "sha256": "43c8f63528dcb5d6a3732a7b91dd51af94b3a752c0389efea78665ab81cdbf78",
1094
+ "language": "C++",
1095
+ "lines": 38,
1096
+ "truncated": false,
1097
+ "block": 3,
1098
+ "row": 1360
1099
+ },
1100
+ {
1101
+ "path": "liblsl/lslboost/libs/serialization/src/text_woarchive.cpp",
1102
+ "sha256": "9273e5f863aa2940266ead778533432e993e5996f1bb7e65de7959d5d63cfb21",
1103
+ "language": "C++",
1104
+ "lines": 36,
1105
+ "truncated": false,
1106
+ "block": 3,
1107
+ "row": 1359
1108
+ },
1109
+ {
1110
+ "path": "liblsl/lslboost/libs/serialization/src/utf8_codecvt_facet.cpp",
1111
+ "sha256": "306138f04fab1cb29641b1c4099363f6ff8281adc260b8a31313083ea1a6ba39",
1112
+ "language": "C++",
1113
+ "lines": 22,
1114
+ "truncated": false,
1115
+ "block": 3,
1116
+ "row": 1015
1117
+ },
1118
+ {
1119
+ "path": "liblsl/lslboost/libs/serialization/src/void_cast.cpp",
1120
+ "sha256": "a33992fe7eb750f0165ba400c2729e23b4424bf8cebe5532c68ec5f43e1537b7",
1121
+ "language": "C++",
1122
+ "lines": 382,
1123
+ "truncated": false,
1124
+ "block": 3,
1125
+ "row": 3054
1126
+ },
1127
+ {
1128
+ "path": "liblsl/lslboost/libs/serialization/src/xml_archive_exception.cpp",
1129
+ "sha256": "54bf44999907f7006ce1a463d7a6760079321ded009248bd83517bb46eeb979b",
1130
+ "language": "C++",
1131
+ "lines": 68,
1132
+ "truncated": false,
1133
+ "block": 3,
1134
+ "row": 1784
1135
+ },
1136
+ {
1137
+ "path": "liblsl/lslboost/libs/serialization/src/xml_grammar.cpp",
1138
+ "sha256": "c6179d55714ead73e21e132a082c3e37276dfc3779e6da16fee31c9185df9e66",
1139
+ "language": "C++",
1140
+ "lines": 74,
1141
+ "truncated": false,
1142
+ "block": 3,
1143
+ "row": 1810
1144
+ },
1145
+ {
1146
+ "path": "liblsl/lslboost/libs/serialization/src/xml_iarchive.cpp",
1147
+ "sha256": "f9af4d3eb5cdfc7d289b650dce9d7faf1d5299eff324d68e83f3da5fba0ac9ad",
1148
+ "language": "C++",
1149
+ "lines": 33,
1150
+ "truncated": false,
1151
+ "block": 3,
1152
+ "row": 1321
1153
+ },
1154
+ {
1155
+ "path": "liblsl/lslboost/libs/serialization/src/xml_oarchive.cpp",
1156
+ "sha256": "ea6dca448ee8fa34d82e80897847e1782b1606c795acaec58ab7e233c8ccbcbe",
1157
+ "language": "C++",
1158
+ "lines": 33,
1159
+ "truncated": false,
1160
+ "block": 3,
1161
+ "row": 1320
1162
+ },
1163
+ {
1164
+ "path": "liblsl/lslboost/libs/serialization/src/xml_wgrammar.cpp",
1165
+ "sha256": "e7d977c01df22c6e7b21d83533c02e885b9b4d9d7ac138b1603337d00304e8df",
1166
+ "language": "C++",
1167
+ "lines": 157,
1168
+ "truncated": false,
1169
+ "block": 3,
1170
+ "row": 2719
1171
+ },
1172
+ {
1173
+ "path": "liblsl/lslboost/libs/serialization/src/xml_wiarchive.cpp",
1174
+ "sha256": "4e222d0556fa1a5c2a75d0169e33ff82ab8067ea48dd4b8b9611c2bf089c85f5",
1175
+ "language": "C++",
1176
+ "lines": 40,
1177
+ "truncated": false,
1178
+ "block": 3,
1179
+ "row": 1442
1180
+ },
1181
+ {
1182
+ "path": "liblsl/lslboost/libs/serialization/src/xml_woarchive.cpp",
1183
+ "sha256": "9a586d261f87be6578f722a6eb61957fd001088880635e53e3565c7dc501b4dc",
1184
+ "language": "C++",
1185
+ "lines": 40,
1186
+ "truncated": false,
1187
+ "block": 3,
1188
+ "row": 1445
1189
+ },
1190
+ {
1191
+ "path": "liblsl/lslboost/serialization_objects.cpp",
1192
+ "sha256": "ed8533a7f4e22c3d5cc93eb481c91646750ff7268533a4ffc21b8a66c4497ac7",
1193
+ "language": "C++",
1194
+ "lines": 16,
1195
+ "truncated": false,
1196
+ "block": 3,
1197
+ "row": 997
1198
+ },
1199
+ {
1200
+ "path": "liblsl/src/api_config.cpp",
1201
+ "sha256": "0771fd62dec975a7f12647bfccc5cf9c59f6dd4ee30ae0dec3da00ebf23f851e",
1202
+ "language": "C++",
1203
+ "lines": 292,
1204
+ "truncated": false,
1205
+ "block": 3,
1206
+ "row": 3037
1207
+ },
1208
+ {
1209
+ "path": "liblsl/src/api_config.h",
1210
+ "sha256": "cdbec4fde248e6bb783284e1b86dedf17e03a09be72b040a5e93dbb773fb6ce4",
1211
+ "language": "C/C++",
1212
+ "lines": 263,
1213
+ "truncated": false,
1214
+ "block": 3,
1215
+ "row": 4374
1216
+ },
1217
+ {
1218
+ "path": "liblsl/src/buildinfo.cpp",
1219
+ "sha256": "ae327a5ec5d81c94c04203df251ce79df8a2ea2f63400f19b0a685a5aff2ac85",
1220
+ "language": "C++",
1221
+ "lines": 11,
1222
+ "truncated": false,
1223
+ "block": 3,
1224
+ "row": 517
1225
+ },
1226
+ {
1227
+ "path": "liblsl/src/cancellable_streambuf.h",
1228
+ "sha256": "3bcf2fb5a923e1429692e7f296d5274cae413da5b6c562ef357cddbba6393bf2",
1229
+ "language": "C/C++",
1230
+ "lines": 200,
1231
+ "truncated": false,
1232
+ "block": 3,
1233
+ "row": 4174
1234
+ },
1235
+ {
1236
+ "path": "liblsl/src/cancellation.cpp",
1237
+ "sha256": "7dad838d7b443760ddc93a7759d272fb351aa1c74b91365fa0cf057da7e194f9",
1238
+ "language": "C++",
1239
+ "lines": 18,
1240
+ "truncated": false,
1241
+ "block": 3,
1242
+ "row": 790
1243
+ },
1244
+ {
1245
+ "path": "liblsl/src/cancellation.h",
1246
+ "sha256": "0fb4364fbb084720f7eadd3b5cde5921a2575132b374500bb97f703b878221a8",
1247
+ "language": "C/C++",
1248
+ "lines": 98,
1249
+ "truncated": false,
1250
+ "block": 3,
1251
+ "row": 3911
1252
+ },
1253
+ {
1254
+ "path": "liblsl/src/common.cpp",
1255
+ "sha256": "51bb547f6ec7097f7c9e84bbdb287ca28f2abe221d124f232f0d0d742736ad73",
1256
+ "language": "C++",
1257
+ "lines": 80,
1258
+ "truncated": false,
1259
+ "block": 3,
1260
+ "row": 1931
1261
+ },
1262
+ {
1263
+ "path": "liblsl/src/common.h",
1264
+ "sha256": "7bf648044f7aab29235328af920b457ea27eb6308aaeaa545c8eedbab46a82d7",
1265
+ "language": "C/C++",
1266
+ "lines": 88,
1267
+ "truncated": false,
1268
+ "block": 3,
1269
+ "row": 3878
1270
+ },
1271
+ {
1272
+ "path": "liblsl/src/consumer_queue.cpp",
1273
+ "sha256": "f49aac6855e2fb311a35eae92c53811dafc7ac039d7780f6519333487b127f27",
1274
+ "language": "C++",
1275
+ "lines": 49,
1276
+ "truncated": false,
1277
+ "block": 3,
1278
+ "row": 1544
1279
+ },
1280
+ {
1281
+ "path": "liblsl/src/consumer_queue.h",
1282
+ "sha256": "f67bb272a23badab636de8752f75020ae32f2a6665b9def75abf27c7f39f21ad",
1283
+ "language": "C/C++",
1284
+ "lines": 207,
1285
+ "truncated": false,
1286
+ "block": 3,
1287
+ "row": 4218
1288
+ },
1289
+ {
1290
+ "path": "liblsl/src/data_receiver.cpp",
1291
+ "sha256": "63484798a07b9d15ccc1bc74816e66f09958c281700fcaccaaba45b5151e1aea",
1292
+ "language": "C++",
1293
+ "lines": 358,
1294
+ "truncated": false,
1295
+ "block": 3,
1296
+ "row": 3134
1297
+ },
1298
+ {
1299
+ "path": "liblsl/src/data_receiver.h",
1300
+ "sha256": "2bcdcac1298bcf6c8d064cf0c20ac1c6ed3cf178f9de7338ae59baff4d67ff9d",
1301
+ "language": "C/C++",
1302
+ "lines": 116,
1303
+ "truncated": false,
1304
+ "block": 3,
1305
+ "row": 4067
1306
+ },
1307
+ {
1308
+ "path": "liblsl/src/forward.h",
1309
+ "sha256": "15d408dfc448b0fe31cdc8a7863cc3bd2fe7d1fb6811fd8992dd0e17bfc98e51",
1310
+ "language": "C/C++",
1311
+ "lines": 30,
1312
+ "truncated": false,
1313
+ "block": 3,
1314
+ "row": 3459
1315
+ },
1316
+ {
1317
+ "path": "liblsl/src/info_receiver.cpp",
1318
+ "sha256": "a60f0a57fce75e86de1de5ecadd1c3d659290d99ef2d14736ad9273cff576865",
1319
+ "language": "C++",
1320
+ "lines": 84,
1321
+ "truncated": false,
1322
+ "block": 3,
1323
+ "row": 2112
1324
+ },
1325
+ {
1326
+ "path": "liblsl/src/info_receiver.h",
1327
+ "sha256": "a7e5eb6758ff2483486fd49df8e6be9a46155e79a51e536a7d6658cdaf8d2487",
1328
+ "language": "C/C++",
1329
+ "lines": 60,
1330
+ "truncated": false,
1331
+ "block": 3,
1332
+ "row": 3788
1333
+ },
1334
+ {
1335
+ "path": "liblsl/src/inlet_connection.cpp",
1336
+ "sha256": "e0de7c1b63b25f1bbd69747b0f2e3673626da52b5e70ae9b4230d89adbe60520",
1337
+ "language": "C++",
1338
+ "lines": 335,
1339
+ "truncated": false,
1340
+ "block": 3,
1341
+ "row": 3085
1342
+ },
1343
+ {
1344
+ "path": "liblsl/src/inlet_connection.h",
1345
+ "sha256": "d98b3dd2f6ffc7782eadd02fd8931849ad7a225eb2a60a8727a90986c2270d7b",
1346
+ "language": "C/C++",
1347
+ "lines": 212,
1348
+ "truncated": false,
1349
+ "block": 3,
1350
+ "row": 4237
1351
+ },
1352
+ {
1353
+ "path": "liblsl/src/legacy/legacy_abi.cpp",
1354
+ "sha256": "7d0ee0a9256d5f88503dd29c1338133ddabc775cd9e2aa20c0d86f835dea3d35",
1355
+ "language": "C++",
1356
+ "lines": 210,
1357
+ "truncated": false,
1358
+ "block": 3,
1359
+ "row": 3124
1360
+ },
1361
+ {
1362
+ "path": "liblsl/src/legacy/legacy_abi.h",
1363
+ "sha256": "c0de63f6e3963fa8d51e24051964a21b0dcacbfd304082f02db326cf69ad8a7e",
1364
+ "language": "C/C++",
1365
+ "lines": 721,
1366
+ "truncated": false,
1367
+ "block": 3,
1368
+ "row": 4590
1369
+ },
1370
+ {
1371
+ "path": "liblsl/src/lsl_inlet_c.cpp",
1372
+ "sha256": "3877ce763dc9e12b7f7874761e574cf1f0c35a8a077907c437a7825ffdd646dc",
1373
+ "language": "C++",
1374
+ "lines": 305,
1375
+ "truncated": false,
1376
+ "block": 3,
1377
+ "row": 3027
1378
+ },
1379
+ {
1380
+ "path": "liblsl/src/lsl_outlet_c.cpp",
1381
+ "sha256": "d9af72aa5a62fa49173bf30b02fdffabf5ee6f18203be8acf5313fe6fbfd4dc3",
1382
+ "language": "C++",
1383
+ "lines": 422,
1384
+ "truncated": false,
1385
+ "block": 3,
1386
+ "row": 3157
1387
+ },
1388
+ {
1389
+ "path": "liblsl/src/lsl_resolver_c.cpp",
1390
+ "sha256": "64031a78d0aaeb830d0fb1f43eca7f7ecfae335f8e8512ff220649c24801fe71",
1391
+ "language": "C++",
1392
+ "lines": 92,
1393
+ "truncated": false,
1394
+ "block": 3,
1395
+ "row": 2247
1396
+ },
1397
+ {
1398
+ "path": "liblsl/src/lsl_streaminfo_c.cpp",
1399
+ "sha256": "1573ac91281e102935ad76dd1b20e0b3ce524639d00d167ebeeed3b1c5cd3a88",
1400
+ "language": "C++",
1401
+ "lines": 93,
1402
+ "truncated": false,
1403
+ "block": 3,
1404
+ "row": 2206
1405
+ },
1406
+ {
1407
+ "path": "liblsl/src/lsl_xml_element_c.cpp",
1408
+ "sha256": "fd814717aa673831695bfb0471c6fd65c556e90389978c3e0121f1da2d9a5652",
1409
+ "language": "C++",
1410
+ "lines": 86,
1411
+ "truncated": false,
1412
+ "block": 3,
1413
+ "row": 2198
1414
+ },
1415
+ {
1416
+ "path": "liblsl/src/netinterfaces.cpp",
1417
+ "sha256": "4eea61e23cca312eb08fdb1644d936967023c89eee5687316932aa9185e9c00f",
1418
+ "language": "C++",
1419
+ "lines": 121,
1420
+ "truncated": false,
1421
+ "block": 3,
1422
+ "row": 2330
1423
+ },
1424
+ {
1425
+ "path": "liblsl/src/netinterfaces.h",
1426
+ "sha256": "ceca587f7402edc7b3ec53dfd7c875d91183e461f211fd6512f9f9f7ec74f08e",
1427
+ "language": "C/C++",
1428
+ "lines": 18,
1429
+ "truncated": false,
1430
+ "block": 3,
1431
+ "row": 3383
1432
+ },
1433
+ {
1434
+ "path": "liblsl/src/resolve_attempt_udp.cpp",
1435
+ "sha256": "1405ac641a356c2f79be2a5e5b965630219e6e490b1d90be7ac01ce3ae8cfc9a",
1436
+ "language": "C++",
1437
+ "lines": 210,
1438
+ "truncated": false,
1439
+ "block": 3,
1440
+ "row": 2837
1441
+ },
1442
+ {
1443
+ "path": "liblsl/src/resolve_attempt_udp.h",
1444
+ "sha256": "1f5efce1d02f07faf2af132b94491f514f6982f8031c65eec8d3c0837478ee9a",
1445
+ "language": "C/C++",
1446
+ "lines": 138,
1447
+ "truncated": false,
1448
+ "block": 3,
1449
+ "row": 4099
1450
+ },
1451
+ {
1452
+ "path": "liblsl/src/resolver_impl.cpp",
1453
+ "sha256": "887ddb639d67b1e7e6c4415c43ce858fc85b877dc6cdabb49c92795aa35c2806",
1454
+ "language": "C++",
1455
+ "lines": 275,
1456
+ "truncated": false,
1457
+ "block": 3,
1458
+ "row": 2904
1459
+ },
1460
+ {
1461
+ "path": "liblsl/src/resolver_impl.h",
1462
+ "sha256": "a9882687c817afd455f434f1616b926c4d643cd9b74f7b17fc604482afe3173e",
1463
+ "language": "C/C++",
1464
+ "lines": 201,
1465
+ "truncated": false,
1466
+ "block": 3,
1467
+ "row": 4240
1468
+ },
1469
+ {
1470
+ "path": "liblsl/src/sample.cpp",
1471
+ "sha256": "0c6b8889c8446a9dfe21ffc83aba942bacafdc135b800c6874d61cdf73bfbd06",
1472
+ "language": "C++",
1473
+ "lines": 498,
1474
+ "truncated": false,
1475
+ "block": 3,
1476
+ "row": 3169
1477
+ },
1478
+ {
1479
+ "path": "liblsl/src/sample.h",
1480
+ "sha256": "7df3227bd2520ad413d3ee6bc4fd7118b2a383db87c5f108b6b9776ebb280197",
1481
+ "language": "C/C++",
1482
+ "lines": 203,
1483
+ "truncated": false,
1484
+ "block": 3,
1485
+ "row": 4188
1486
+ },
1487
+ {
1488
+ "path": "liblsl/src/send_buffer.cpp",
1489
+ "sha256": "bb842cb106418aeb05018b40be39150336ddee953564bb6c8e22ae8753d8a1d0",
1490
+ "language": "C++",
1491
+ "lines": 61,
1492
+ "truncated": false,
1493
+ "block": 3,
1494
+ "row": 1768
1495
+ },
1496
+ {
1497
+ "path": "liblsl/src/send_buffer.h",
1498
+ "sha256": "bcf82666eab03708c179f44f29ca1c550b1a3c23ce36f4700e823732810bb5b3",
1499
+ "language": "C/C++",
1500
+ "lines": 76,
1501
+ "truncated": false,
1502
+ "block": 3,
1503
+ "row": 3889
1504
+ },
1505
+ {
1506
+ "path": "liblsl/src/socket_utils.cpp",
1507
+ "sha256": "ed66e663cd2e7385e10a46a30abb125f9211cdc65a7f55da988d5dd029a112a5",
1508
+ "language": "C++",
1509
+ "lines": 36,
1510
+ "truncated": false,
1511
+ "block": 3,
1512
+ "row": 1459
1513
+ },
1514
+ {
1515
+ "path": "liblsl/src/socket_utils.h",
1516
+ "sha256": "1f5c1f7743dcea271dd1ba7847bece768049cacea00d22bdfb4a71ef7f7a9c7a",
1517
+ "language": "C/C++",
1518
+ "lines": 24,
1519
+ "truncated": false,
1520
+ "block": 3,
1521
+ "row": 3488
1522
+ },
1523
+ {
1524
+ "path": "liblsl/src/stream_info_impl.cpp",
1525
+ "sha256": "b2b7874fe74dad8557d28ca0950c810d2f352d2863fc3567e22e36de8369c2f2",
1526
+ "language": "C++",
1527
+ "lines": 360,
1528
+ "truncated": false,
1529
+ "block": 3,
1530
+ "row": 3086
1531
+ },
1532
+ {
1533
+ "path": "liblsl/src/stream_info_impl.h",
1534
+ "sha256": "ed106d1694febe836428ffb8bc6e7d329a9e20a7cc0ce3871c2ac2d22fb4d5b6",
1535
+ "language": "C/C++",
1536
+ "lines": 263,
1537
+ "truncated": false,
1538
+ "block": 3,
1539
+ "row": 4289
1540
+ },
1541
+ {
1542
+ "path": "liblsl/src/stream_inlet_impl.h",
1543
+ "sha256": "3075a387609f96a31a83a84adcef6818bd8072d0f975d8e82b56fccf53ce2582",
1544
+ "language": "C/C++",
1545
+ "lines": 345,
1546
+ "truncated": false,
1547
+ "block": 3,
1548
+ "row": 4463
1549
+ },
1550
+ {
1551
+ "path": "liblsl/src/stream_outlet_impl.cpp",
1552
+ "sha256": "0ca39eabd567f97eabceb767c7596fe1232223db7d8969f96c3fd2cd4f40816b",
1553
+ "language": "C++",
1554
+ "lines": 177,
1555
+ "truncated": false,
1556
+ "block": 3,
1557
+ "row": 2801
1558
+ },
1559
+ {
1560
+ "path": "liblsl/src/stream_outlet_impl.h",
1561
+ "sha256": "ea54f0033a957166669f8d316cfa85bb31476e679dd0e031a08838ece64306eb",
1562
+ "language": "C/C++",
1563
+ "lines": 338,
1564
+ "truncated": false,
1565
+ "block": 3,
1566
+ "row": 4418
1567
+ },
1568
+ {
1569
+ "path": "liblsl/src/tcp_server.cpp",
1570
+ "sha256": "dc334df19719b9c898c63d2e6b7f85c40f2d4764d16e2532447a22fd66c85c9e",
1571
+ "language": "C++",
1572
+ "lines": 615,
1573
+ "truncated": false,
1574
+ "block": 3,
1575
+ "row": 3215
1576
+ },
1577
+ {
1578
+ "path": "liblsl/src/tcp_server.h",
1579
+ "sha256": "7aa778dfda123348f24e9ab4dcc8a1a8aad84883a2401c242d79160add8812f6",
1580
+ "language": "C/C++",
1581
+ "lines": 108,
1582
+ "truncated": false,
1583
+ "block": 3,
1584
+ "row": 4029
1585
+ },
1586
+ {
1587
+ "path": "liblsl/src/time_postprocessor.cpp",
1588
+ "sha256": "651b88e8a43d6da0627f5c0f8b8a4ab74803c00621d52a240fbf7edc6bba3fa2",
1589
+ "language": "C++",
1590
+ "lines": 135,
1591
+ "truncated": false,
1592
+ "block": 3,
1593
+ "row": 2429
1594
+ },
1595
+ {
1596
+ "path": "liblsl/src/time_postprocessor.h",
1597
+ "sha256": "1d4bfea2a8d65413a8f145ec5c3c9d885f479adfe00b32d9b76f0daf63ca4173",
1598
+ "language": "C/C++",
1599
+ "lines": 106,
1600
+ "truncated": false,
1601
+ "block": 3,
1602
+ "row": 3997
1603
+ },
1604
+ {
1605
+ "path": "liblsl/src/time_receiver.cpp",
1606
+ "sha256": "987c9efbd84364152bcb4c02d906f22e0479a4c2653205de0c3541018c113876",
1607
+ "language": "C++",
1608
+ "lines": 219,
1609
+ "truncated": false,
1610
+ "block": 3,
1611
+ "row": 2850
1612
+ },
1613
+ {
1614
+ "path": "liblsl/src/time_receiver.h",
1615
+ "sha256": "7cd6bd2a625909cf943acceccb951681294f73ebc26c020ccb8e44461ce42b24",
1616
+ "language": "C/C++",
1617
+ "lines": 136,
1618
+ "truncated": false,
1619
+ "block": 3,
1620
+ "row": 4072
1621
+ },
1622
+ {
1623
+ "path": "liblsl/src/udp_server.cpp",
1624
+ "sha256": "ae2bfe2503eb5a0026afc964997cf31fd8dd0c8b1c41307a0d12d7857ee24cc8",
1625
+ "language": "C++",
1626
+ "lines": 204,
1627
+ "truncated": false,
1628
+ "block": 3,
1629
+ "row": 2825
1630
+ },
1631
+ {
1632
+ "path": "liblsl/src/udp_server.h",
1633
+ "sha256": "5c1d8b2bc2d95eb0fa49c244e4c260fcfdd18d99400e4dd84afec06ecb2184a2",
1634
+ "language": "C/C++",
1635
+ "lines": 90,
1636
+ "truncated": false,
1637
+ "block": 3,
1638
+ "row": 3925
1639
+ },
1640
+ {
1641
+ "path": "liblsl/src/util/cast.cpp",
1642
+ "sha256": "341b768eeb6ac5da5dd70d4b8263f792e1e8e2651d7a01db5405277cee5a733d",
1643
+ "language": "C++",
1644
+ "lines": 42,
1645
+ "truncated": false,
1646
+ "block": 3,
1647
+ "row": 1306
1648
+ },
1649
+ {
1650
+ "path": "liblsl/src/util/endian.cpp",
1651
+ "sha256": "a4f596f618d45d2eb8177bdd38771267769bda32571ca954494ef117dfa5a057",
1652
+ "language": "C++",
1653
+ "lines": 12,
1654
+ "truncated": false,
1655
+ "block": 3,
1656
+ "row": 654
1657
+ },
1658
+ {
1659
+ "path": "liblsl/src/util/inireader.cpp",
1660
+ "sha256": "f661b325706b1aee4fb192896ddcb213d17876fb1ac27d934b9a6b26ff358999",
1661
+ "language": "C++",
1662
+ "lines": 41,
1663
+ "truncated": false,
1664
+ "block": 3,
1665
+ "row": 1585
1666
+ },
1667
+ {
1668
+ "path": "liblsl/src/util/strfuns.cpp",
1669
+ "sha256": "5c8e1db07700dacb81f2040e6e2fe51c2785ac7b598b4677accf5f6baa10fa9e",
1670
+ "language": "C++",
1671
+ "lines": 56,
1672
+ "truncated": false,
1673
+ "block": 3,
1674
+ "row": 1532
1675
+ },
1676
+ {
1677
+ "path": "liblsl/standalone_compilation_linux.sh",
1678
+ "sha256": "fb97186a8f95f7215ecc7d5ee5410f9056c493b9ecdc44f9915f9ed61e5f3a4d",
1679
+ "language": "Shell",
1680
+ "lines": 24,
1681
+ "truncated": false,
1682
+ "block": 4,
1683
+ "row": 1740
1684
+ },
1685
+ {
1686
+ "path": "liblsl/testing/BounceTest/BounceTest.cpp",
1687
+ "sha256": "bfeb4de792f11b24f277e40868203610951046a4b31383f899dc9b133c26d6cb",
1688
+ "language": "C++",
1689
+ "lines": 81,
1690
+ "truncated": false,
1691
+ "block": 3,
1692
+ "row": 2043
1693
+ },
1694
+ {
1695
+ "path": "liblsl/testing/SpeedTest/SpeedTest.cpp",
1696
+ "sha256": "e233242bf69585fc1e4458643a266faa13ab12f94b02c9fc328bb8b3abe12265",
1697
+ "language": "C++",
1698
+ "lines": 165,
1699
+ "truncated": false,
1700
+ "block": 3,
1701
+ "row": 2634
1702
+ },
1703
+ {
1704
+ "path": "liblsl/testing/StressTest/StressTest.cpp",
1705
+ "sha256": "590466ce3bb658622fb1f6b609064aa72720bc2ae47d7603ca923ced0226fae5",
1706
+ "language": "C++",
1707
+ "lines": 211,
1708
+ "truncated": false,
1709
+ "block": 3,
1710
+ "row": 2984
1711
+ },
1712
+ {
1713
+ "path": "liblsl/testing/SyncTest/main.cpp",
1714
+ "sha256": "2ce35d5ada75c76b97fe09f3285411222b24902422e143f6093a1e423295f04e",
1715
+ "language": "C++",
1716
+ "lines": 203,
1717
+ "truncated": false,
1718
+ "block": 3,
1719
+ "row": 2948
1720
+ },
1721
+ {
1722
+ "path": "liblsl/testing/blackhole.cpp",
1723
+ "sha256": "882ba10e157dfb177380183d1797bbd81078333b797aea30addbb6dc8522376b",
1724
+ "language": "C++",
1725
+ "lines": 147,
1726
+ "truncated": false,
1727
+ "block": 3,
1728
+ "row": 2449
1729
+ },
1730
+ {
1731
+ "path": "liblsl/testing/catch_main.cpp",
1732
+ "sha256": "5489d242247cb6d8be26601fa5d67d2fe7d6350b91bd7965c940f1074fca8808",
1733
+ "language": "C++",
1734
+ "lines": 17,
1735
+ "truncated": false,
1736
+ "block": 3,
1737
+ "row": 773
1738
+ },
1739
+ {
1740
+ "path": "liblsl/testing/common/bytecmp.cpp",
1741
+ "sha256": "30303970cfe2d4331f179450621dc61f12739bd1e4e16782dc5f8a019039d305",
1742
+ "language": "C++",
1743
+ "lines": 52,
1744
+ "truncated": false,
1745
+ "block": 3,
1746
+ "row": 1696
1747
+ },
1748
+ {
1749
+ "path": "liblsl/testing/ext/DataType.cpp",
1750
+ "sha256": "dfb3c47541093d4be839021e7fa207eeee45ea8637471b8ea96b46826310e351",
1751
+ "language": "C++",
1752
+ "lines": 107,
1753
+ "truncated": false,
1754
+ "block": 3,
1755
+ "row": 2254
1756
+ },
1757
+ {
1758
+ "path": "liblsl/testing/ext/bench_bounce.cpp",
1759
+ "sha256": "f9e51e96f063c830ff1000e45c6aec92eaeb1fa229f8f88c03a8609cb9baa932",
1760
+ "language": "C++",
1761
+ "lines": 22,
1762
+ "truncated": false,
1763
+ "block": 3,
1764
+ "row": 800
1765
+ },
1766
+ {
1767
+ "path": "liblsl/testing/ext/bench_common.cpp",
1768
+ "sha256": "9196ab82c11bd544106b7ef2b51b93edeb070330819aaa5938f50b0877830f91",
1769
+ "language": "C++",
1770
+ "lines": 8,
1771
+ "truncated": false,
1772
+ "block": 3,
1773
+ "row": 486
1774
+ },
1775
+ {
1776
+ "path": "liblsl/testing/ext/bench_pushpull.cpp",
1777
+ "sha256": "cfa4abc9c1c7160f009166b4b3b0aaea2b4709b54189c44e8ce2f9da18f9391e",
1778
+ "language": "C++",
1779
+ "lines": 70,
1780
+ "truncated": false,
1781
+ "block": 3,
1782
+ "row": 1984
1783
+ },
1784
+ {
1785
+ "path": "liblsl/testing/ext/discovery.cpp",
1786
+ "sha256": "57e346b66dae344817fd43e1bd256bf01b36a8740eb6e072eb643eb0b0d02f60",
1787
+ "language": "C++",
1788
+ "lines": 47,
1789
+ "truncated": false,
1790
+ "block": 3,
1791
+ "row": 1658
1792
+ },
1793
+ {
1794
+ "path": "liblsl/testing/ext/move.cpp",
1795
+ "sha256": "b1985b7cb6e495e54c44948c9680bff4a7258071d8303a0cad8d02d8d3061747",
1796
+ "language": "C++",
1797
+ "lines": 74,
1798
+ "truncated": false,
1799
+ "block": 3,
1800
+ "row": 1886
1801
+ },
1802
+ {
1803
+ "path": "liblsl/testing/ext/streaminfo.cpp",
1804
+ "sha256": "b280e2e514c5300be73e70112a3d0f14b9a716aeafe3f2c3df623e976df7270a",
1805
+ "language": "C++",
1806
+ "lines": 29,
1807
+ "truncated": false,
1808
+ "block": 3,
1809
+ "row": 1156
1810
+ },
1811
+ {
1812
+ "path": "liblsl/testing/ext/time.cpp",
1813
+ "sha256": "a998d950cfca81fa17f8874c7bc2444aff76a1b9f6f45dc0302cd85b1b891194",
1814
+ "language": "C++",
1815
+ "lines": 44,
1816
+ "truncated": false,
1817
+ "block": 3,
1818
+ "row": 1348
1819
+ },
1820
+ {
1821
+ "path": "liblsl/testing/int/bench_sleep.cpp",
1822
+ "sha256": "ac62f42ee97ee94622a4eda97830abd6774ff5a094afab2f7f3aec0c258cda88",
1823
+ "language": "C++",
1824
+ "lines": 14,
1825
+ "truncated": false,
1826
+ "block": 3,
1827
+ "row": 699
1828
+ },
1829
+ {
1830
+ "path": "liblsl/testing/int/bench_timesync.cpp",
1831
+ "sha256": "e8e622066fc9e48cf5c6367e02b6ac2530dffd9b4afbd20a0585dc1497653e40",
1832
+ "language": "C++",
1833
+ "lines": 32,
1834
+ "truncated": false,
1835
+ "block": 3,
1836
+ "row": 1188
1837
+ },
1838
+ {
1839
+ "path": "liblsl/testing/int/inireader.cpp",
1840
+ "sha256": "456e5ab9c45c3d94c862a0448cf5667757b0cf7059cf58e630e5af0c691b1303",
1841
+ "language": "C++",
1842
+ "lines": 37,
1843
+ "truncated": false,
1844
+ "block": 3,
1845
+ "row": 1220
1846
+ },
1847
+ {
1848
+ "path": "liblsl/testing/int/loguruthreadnames.cpp",
1849
+ "sha256": "fadaa04451e4dd23690c1a7d421f3364fa3e044329d5367c8adebc29546de65b",
1850
+ "language": "C++",
1851
+ "lines": 18,
1852
+ "truncated": false,
1853
+ "block": 3,
1854
+ "row": 776
1855
+ },
1856
+ {
1857
+ "path": "liblsl/testing/int/network.cpp",
1858
+ "sha256": "3fa7a458e163cc4e3865f6d06d080066e154194d2ada2338a3fd851f233a1dda",
1859
+ "language": "C++",
1860
+ "lines": 376,
1861
+ "truncated": false,
1862
+ "block": 3,
1863
+ "row": 3104
1864
+ },
1865
+ {
1866
+ "path": "liblsl/testing/int/postproc.cpp",
1867
+ "sha256": "dc77c2ed9c97f6bed647fda1f091f0f47f0fb742017fdfc687e69320b0fe58c2",
1868
+ "language": "C++",
1869
+ "lines": 80,
1870
+ "truncated": false,
1871
+ "block": 3,
1872
+ "row": 1913
1873
+ },
1874
+ {
1875
+ "path": "liblsl/testing/int/samples.cpp",
1876
+ "sha256": "2ec927c3c87a02675fc24fcfe918a6323ee8fb778cb97c4ef89d38a6ada4e92f",
1877
+ "language": "C++",
1878
+ "lines": 74,
1879
+ "truncated": false,
1880
+ "block": 3,
1881
+ "row": 1800
1882
+ },
1883
+ {
1884
+ "path": "liblsl/testing/int/serialization_v100.cpp",
1885
+ "sha256": "a8e83b11c8d4540b90cf61beb492cda8d86c46d09027a7b7ce0a02323a331076",
1886
+ "language": "C++",
1887
+ "lines": 105,
1888
+ "truncated": false,
1889
+ "block": 3,
1890
+ "row": 2282
1891
+ },
1892
+ {
1893
+ "path": "liblsl/testing/int/streaminfo.cpp",
1894
+ "sha256": "d7046d0fa3622f4a4ecf419b7b26203dba052f280be65b307350650d926cb07a",
1895
+ "language": "C++",
1896
+ "lines": 90,
1897
+ "truncated": false,
1898
+ "block": 3,
1899
+ "row": 2082
1900
+ },
1901
+ {
1902
+ "path": "liblsl/testing/int/stringfuncs.cpp",
1903
+ "sha256": "03bec5b39897999ae8aac22c5df5edb80229ac827eabe5d77b9860d18b9d2ee4",
1904
+ "language": "C++",
1905
+ "lines": 59,
1906
+ "truncated": false,
1907
+ "block": 3,
1908
+ "row": 1820
1909
+ },
1910
+ {
1911
+ "path": "liblsl/testing/int/tcpserver.cpp",
1912
+ "sha256": "b81909d0754a8df50699f51c0e7f438eb21b5a889ee56e3674fd03f9a0bc1b64",
1913
+ "language": "C++",
1914
+ "lines": 209,
1915
+ "truncated": false,
1916
+ "block": 3,
1917
+ "row": 2826
1918
+ },
1919
+ {
1920
+ "path": "liblsl/testing/lslver.c",
1921
+ "sha256": "4723b5ce8d5445e44158023cd9fd049721a66378a1931ccbcde7e87d7deedfbb",
1922
+ "language": "C",
1923
+ "lines": 7,
1924
+ "truncated": false,
1925
+ "block": 3,
1926
+ "row": 1
1927
+ },
1928
+ {
1929
+ "path": "liblsl/thirdparty/asio_objects.cpp",
1930
+ "sha256": "e8bfedafec9ba8d6e97b18d6c3e81b0d6d6fa37a4e989b60e218ebfddc90c1c4",
1931
+ "language": "C++",
1932
+ "lines": 6,
1933
+ "truncated": false,
1934
+ "block": 3,
1935
+ "row": 629
1936
+ },
1937
+ {
1938
+ "path": "liblsl/thirdparty/loguru/loguru.cpp",
1939
+ "sha256": "fbda3d24bb6a31d7d84086e2b98e63de785d1be8a357e35230f8f66576f03df6",
1940
+ "language": "C++",
1941
+ "lines": 2007,
1942
+ "truncated": false,
1943
+ "block": 3,
1944
+ "row": 3281
1945
+ },
1946
+ {
1947
+ "path": "liblsl/thirdparty/pugixml/pugixml.cpp",
1948
+ "sha256": "a10e049d80388012d53266b7297cc82245e30159944b38cf69f31ab5069d3e91",
1949
+ "language": "C++",
1950
+ "lines": 7389,
1951
+ "truncated": true,
1952
+ "block": 3,
1953
+ "row": 3308
1954
+ },
1955
+ {
1956
+ "path": "liblsl/update_lslboost.sh",
1957
+ "sha256": "09012fe320b52f36a5325d2fdaee7a75c7ad10715c9f11dfd79bdf17a53f3769",
1958
+ "language": "Shell",
1959
+ "lines": 15,
1960
+ "truncated": false,
1961
+ "block": 4,
1962
+ "row": 1615
1963
+ }
1964
+ ]
1965
+ }
manifests/04/github.com__oliviakowalczyk__spain_squeeze.json ADDED
@@ -0,0 +1,282 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/oliviakowalczyk/spain_squeeze",
4
+ "url": "https://github.com/oliviakowalczyk/spain_squeeze/releases/tag/v1.0",
5
+ "host": "github.com",
6
+ "commit": "19d029c93c508aaf8ef48d30004f12aefb22b4e6",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "01_preprocessing/00_data_wrangling.sh",
13
+ "sha256": "5979118a8564dad3f344f4caf0b7e4224f246261c1b039b207a6c029319b63c1",
14
+ "language": "Shell",
15
+ "lines": 25,
16
+ "truncated": false,
17
+ "block": 4,
18
+ "row": 1770
19
+ },
20
+ {
21
+ "path": "01_preprocessing/01_apshiftfix_loop.sh",
22
+ "sha256": "734f27c83924bfeb6e28ae6769cfc81eff10673c5b534044781c3bf18e593c87",
23
+ "language": "Shell",
24
+ "lines": 35,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 1862
28
+ },
29
+ {
30
+ "path": "01_preprocessing/02_chop.sh",
31
+ "sha256": "77ab29af1b18dfa48b6eca64e82031d03a9e50d6c169829114c5155a9390a706",
32
+ "language": "Shell",
33
+ "lines": 49,
34
+ "truncated": false,
35
+ "block": 4,
36
+ "row": 1922
37
+ },
38
+ {
39
+ "path": "01_preprocessing/03_neptune_moco.sh",
40
+ "sha256": "2bdd421a20f38d115ce0228b74ebc647e51a88df11bf1ff695592ae1b98d152b",
41
+ "language": "Shell",
42
+ "lines": 100,
43
+ "truncated": false,
44
+ "block": 4,
45
+ "row": 2098
46
+ },
47
+ {
48
+ "path": "01_preprocessing/03_neptune_moco_loop.sh",
49
+ "sha256": "141322e1eddfc158b6fd32724cfa9db004f797821d17476c0fd0f47cb9174b64",
50
+ "language": "Shell",
51
+ "lines": 25,
52
+ "truncated": false,
53
+ "block": 4,
54
+ "row": 1765
55
+ },
56
+ {
57
+ "path": "01_preprocessing/04_func_seg.sh",
58
+ "sha256": "322e4c5bd6ab08f518caf7b2cb1fe309de3a07afd29d43829d56b28fd632aa89",
59
+ "language": "Shell",
60
+ "lines": 27,
61
+ "truncated": false,
62
+ "block": 4,
63
+ "row": 1748
64
+ },
65
+ {
66
+ "path": "01_preprocessing/05_disc_labels.sh",
67
+ "sha256": "26a329040b1f91c87cb1e39a00772ff376479ec21a266dfff20276eea033c4bd",
68
+ "language": "Shell",
69
+ "lines": 30,
70
+ "truncated": false,
71
+ "block": 4,
72
+ "row": 1795
73
+ },
74
+ {
75
+ "path": "01_preprocessing/06_reg.sh",
76
+ "sha256": "92b12f0af04fbe7e282da41d44e44cfe9da938e6a6364b442a76931b8fcaeab4",
77
+ "language": "Shell",
78
+ "lines": 78,
79
+ "truncated": false,
80
+ "block": 4,
81
+ "row": 2101
82
+ },
83
+ {
84
+ "path": "01_preprocessing/06_reg_rootlets.sh",
85
+ "sha256": "7c40351b1f11935ab35b97768dc7d2543ad7cd195b0908da0e7557507887baf5",
86
+ "language": "Shell",
87
+ "lines": 75,
88
+ "truncated": false,
89
+ "block": 4,
90
+ "row": 2106
91
+ },
92
+ {
93
+ "path": "01_preprocessing/07_smooth.sh",
94
+ "sha256": "bb3a9c91ed55fa8cf18e69c06de36e61386f3301c45638175e13ae2afab9b39e",
95
+ "language": "Shell",
96
+ "lines": 56,
97
+ "truncated": false,
98
+ "block": 4,
99
+ "row": 1899
100
+ },
101
+ {
102
+ "path": "01_preprocessing/08_phys_merge.sh",
103
+ "sha256": "421189f7e57cfc241f96c9c14a30b0d1cb45bef8b68746e79c490b510fd99baa",
104
+ "language": "Shell",
105
+ "lines": 27,
106
+ "truncated": false,
107
+ "block": 4,
108
+ "row": 1763
109
+ },
110
+ {
111
+ "path": "01_preprocessing/09_csf_mask.sh",
112
+ "sha256": "e566f7f9687204f1829f0d144b5054052746c216b243340d34112fb3f02c9f97",
113
+ "language": "Shell",
114
+ "lines": 26,
115
+ "truncated": false,
116
+ "block": 4,
117
+ "row": 1752
118
+ },
119
+ {
120
+ "path": "01_preprocessing/09_warp_template.sh",
121
+ "sha256": "48e76d19e3226ce03b2f33e6c036d6e52fb7882752c433bf311bad99cb7450e1",
122
+ "language": "Shell",
123
+ "lines": 23,
124
+ "truncated": false,
125
+ "block": 4,
126
+ "row": 1707
127
+ },
128
+ {
129
+ "path": "01_preprocessing/10_pnm_evs.sh",
130
+ "sha256": "f5632cf4ff52d800bd0a6feac7599a2976ac2d06ecd6204804d7f0c5a13a1441",
131
+ "language": "Shell",
132
+ "lines": 26,
133
+ "truncated": false,
134
+ "block": 4,
135
+ "row": 1801
136
+ },
137
+ {
138
+ "path": "01_preprocessing/apshiftfix.m",
139
+ "sha256": "4215c1d2fa1b51eb4b51a266b4738237c5f931418e2817aacb579f1c1905a6c6",
140
+ "language": "MATLAB",
141
+ "lines": 244,
142
+ "truncated": false,
143
+ "block": 3,
144
+ "row": 15356
145
+ },
146
+ {
147
+ "path": "01_preprocessing/mkgauss2D.sh",
148
+ "sha256": "ba41ca80313e4ae58c9db9d5788df7c256870c25c4cf375d9f460fd19860e476",
149
+ "language": "Shell",
150
+ "lines": 49,
151
+ "truncated": false,
152
+ "block": 4,
153
+ "row": 1944
154
+ },
155
+ {
156
+ "path": "01_preprocessing/phys_merge.m",
157
+ "sha256": "c20bb26f6964a5e5f93ada3b0a96b5bfab9733ac99a5a651566a8a315115b308",
158
+ "language": "MATLAB",
159
+ "lines": 178,
160
+ "truncated": false,
161
+ "block": 3,
162
+ "row": 14252
163
+ },
164
+ {
165
+ "path": "02_subject_level/cope_reg.sh",
166
+ "sha256": "4994a39bba0cc892da17560a1dc0b0460e03a57ae6fd0e4dc33746114277cdbd",
167
+ "language": "Shell",
168
+ "lines": 38,
169
+ "truncated": false,
170
+ "block": 4,
171
+ "row": 1905
172
+ },
173
+ {
174
+ "path": "02_subject_level/design_file_generator.py",
175
+ "sha256": "6d37f08da9af7feb3a88743ced59a63d6c6ad4925d931bbe8aca18fb98b1efc9",
176
+ "language": "Python",
177
+ "lines": 44,
178
+ "truncated": false,
179
+ "block": 3,
180
+ "row": 19809
181
+ },
182
+ {
183
+ "path": "02_subject_level/pe_reg.sh",
184
+ "sha256": "a3c057cc4b1377631e44668f00879381deef21f2fe456fccaa77dac8ca74f033",
185
+ "language": "Shell",
186
+ "lines": 21,
187
+ "truncated": false,
188
+ "block": 4,
189
+ "row": 1756
190
+ },
191
+ {
192
+ "path": "02_subject_level/zstat_reg.sh",
193
+ "sha256": "48872b398ff8e31482b7de83cbb2ba1fc0d52587aa0c607b5c29a6b39e7421ad",
194
+ "language": "Shell",
195
+ "lines": 21,
196
+ "truncated": false,
197
+ "block": 4,
198
+ "row": 1758
199
+ },
200
+ {
201
+ "path": "03_group_level/data_wrangling.sh",
202
+ "sha256": "ea6fbb9509d112dc8faef59a0f47eed105ca713c800e60a95cdbd4a1638a69cb",
203
+ "language": "Shell",
204
+ "lines": 169,
205
+ "truncated": false,
206
+ "block": 4,
207
+ "row": 2256
208
+ },
209
+ {
210
+ "path": "03_group_level/randomise_loop.sh",
211
+ "sha256": "4a1cf828a7216964ea0f9f654a24dd0a9503c86a3c34695c77fb4de3fa21b135",
212
+ "language": "Shell",
213
+ "lines": 29,
214
+ "truncated": false,
215
+ "block": 4,
216
+ "row": 1797
217
+ },
218
+ {
219
+ "path": "04_reliability/dice.sh",
220
+ "sha256": "2cb04e064000513a75d63386ef69e3719ac3964b918fba459cbbc93af0708e4c",
221
+ "language": "Shell",
222
+ "lines": 52,
223
+ "truncated": false,
224
+ "block": 4,
225
+ "row": 1927
226
+ },
227
+ {
228
+ "path": "04_reliability/icc/01_nii2analyze.sh",
229
+ "sha256": "48f5845f861e2f04627965310f037125fa8badbf6778d03b9db17d3e281179cd",
230
+ "language": "Shell",
231
+ "lines": 27,
232
+ "truncated": false,
233
+ "block": 4,
234
+ "row": 1778
235
+ },
236
+ {
237
+ "path": "04_reliability/icc/02_extract_mean_roi.sh",
238
+ "sha256": "6f1a235ebb6670cd4575431710263dc0f1f5254f7bf2a92bf1919aa410b5f0b9",
239
+ "language": "Shell",
240
+ "lines": 77,
241
+ "truncated": false,
242
+ "block": 4,
243
+ "row": 2073
244
+ },
245
+ {
246
+ "path": "04_reliability/icc/03_extract_mean_roi_txt2csv.sh",
247
+ "sha256": "568409f09ae4056190519f29d06dd16d11774ddfa125d6e33675720ca2509892",
248
+ "language": "Shell",
249
+ "lines": 83,
250
+ "truncated": false,
251
+ "block": 4,
252
+ "row": 2070
253
+ },
254
+ {
255
+ "path": "04_reliability/tsnr/01_tsnr.sh",
256
+ "sha256": "592ca58ca2ee3da7b0ff11e607443e8d6f551b48ad259e574b65a0b66d019304",
257
+ "language": "Shell",
258
+ "lines": 38,
259
+ "truncated": false,
260
+ "block": 4,
261
+ "row": 1834
262
+ },
263
+ {
264
+ "path": "LICENSE",
265
+ "sha256": "358efda5e9319eafbd96205a3edcd50b22049f3afa62d4f237dbe8c71e299943",
266
+ "language": "License",
267
+ "lines": 21,
268
+ "truncated": false,
269
+ "block": 3,
270
+ "row": 8022
271
+ },
272
+ {
273
+ "path": "README.md",
274
+ "sha256": "4f4dbb751cc35d2ea92ad1c0b351085a9bd9edc7d8b843bda4384e4f53f4b874",
275
+ "language": "Text",
276
+ "lines": 12,
277
+ "truncated": false,
278
+ "block": 4,
279
+ "row": 2319
280
+ }
281
+ ]
282
+ }
manifests/05/github.com__shadou__kc_lifestyle_ml_classifier.json ADDED
@@ -0,0 +1,39 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/shadou/kc_lifestyle_ml_classifier",
4
+ "url": "https://github.com/Shadou/KC_Lifestyle_ML_Classifier",
5
+ "host": "github.com",
6
+ "commit": "a0722318f6409bd516406fcb7506bd0eed8025a4",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "f5a6182d30a85a43f4f99ee25c001801abb9d53c8b928b1330615423eea352ec",
14
+ "language": "License",
15
+ "lines": 21,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 7922
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "0c192b489d0fb1ea5dbb661fb0e00206511525c191b5fc42ddd7edee3b8fa408",
23
+ "language": "Text",
24
+ "lines": 98,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2487
28
+ },
29
+ {
30
+ "path": "main.py",
31
+ "sha256": "33facfd5eb0396be42a34a73a30226ac88b0738c2d8f6d6fc04886a5d751a93e",
32
+ "language": "Python",
33
+ "lines": 562,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 27271
37
+ }
38
+ ]
39
+ }
manifests/05/zenodo__20839352.json ADDED
@@ -0,0 +1,57 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "zenodo:20839352",
4
+ "url": "10.5281/zenodo.20839352",
5
+ "host": "zenodo.org",
6
+ "commit": "",
7
+ "license": "CC-BY-4.0",
8
+ "license_confirmed_by": "license of the archive's record",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "Deep Learning_CNN/Main_v4_Gen_TSImg.py",
13
+ "sha256": "400038e5e20279bb2523e4710a6f6bdb316622e09cefe40eeb9c4d13bc4501e6",
14
+ "language": "Python",
15
+ "lines": 67,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 21015
19
+ },
20
+ {
21
+ "path": "Deep Learning_CNN/Main_v4_Train_TSImgs.py",
22
+ "sha256": "50f06b13e8894f624eacbb1d9a052f03365ee6cfc7a6422115d76f7ce66d7a94",
23
+ "language": "Python",
24
+ "lines": 155,
25
+ "truncated": false,
26
+ "block": 3,
27
+ "row": 23950
28
+ },
29
+ {
30
+ "path": "LOSO_Bootstrap CI_Sensitivity Analysis/Main_v4_Train_TSImgs_v3.py",
31
+ "sha256": "d3e880cbd352ed0becbdbb4dec555bdd7a995327361aa74c209defb7fc0eb3d7",
32
+ "language": "Python",
33
+ "lines": 1722,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 28046
37
+ },
38
+ {
39
+ "path": "Machine Learning_Lasso/LASSO_Logistic_BinaryClassification.py",
40
+ "sha256": "a9d0116f698687c33fe0ced1711302517391a6f262c08ab1df810b307a115fdf",
41
+ "language": "Python",
42
+ "lines": 535,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 26896
46
+ },
47
+ {
48
+ "path": "README.md",
49
+ "sha256": "a817bb5ef2bfe0839433920d95cdb6b3bcb3d08caa423c619f46e10a2811b8c6",
50
+ "language": "Text",
51
+ "lines": 9,
52
+ "truncated": false,
53
+ "block": 4,
54
+ "row": 2322
55
+ }
56
+ ]
57
+ }
manifests/08/zenodo__22227732.json ADDED
@@ -0,0 +1,120 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "zenodo:22227732",
4
+ "url": "https://doi.org/10.5281/zenodo.22227732",
5
+ "host": "zenodo.org",
6
+ "commit": "",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "f8b208649feb828e77ae0cecf74c30493e8da0b6fdab7e5a28a60a05c8afeb49",
14
+ "language": "License",
15
+ "lines": 21,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 7998
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "2a35ac5d3b4d932804cc9349d678b9ac4a1a3cf8de0bb2bbd359b78588bf3240",
23
+ "language": "Text",
24
+ "lines": 91,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2493
28
+ },
29
+ {
30
+ "path": "param_search/local_sensitivity.py",
31
+ "sha256": "065182857e3e60ca0f274c86b8bf9d4b09c79dc3f3029f7bca32dd3e20c944a1",
32
+ "language": "Python",
33
+ "lines": 261,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 25056
37
+ },
38
+ {
39
+ "path": "param_search/param_search.py",
40
+ "sha256": "b6806bb81913116ef915887d9e0edccd77dc17fb806ede17256bbca0a844910f",
41
+ "language": "Python",
42
+ "lines": 476,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 26540
46
+ },
47
+ {
48
+ "path": "param_search/plot_GA_log.py",
49
+ "sha256": "fc1eb1533e89738843e4306eb365a6ed350c69fbc500e8ba051a048c8303c6f1",
50
+ "language": "Python",
51
+ "lines": 46,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 19655
55
+ },
56
+ {
57
+ "path": "simulation/model_simlation/frequency_sensitivity.cpp",
58
+ "sha256": "8691a177726e31a313c8fd78b6255d0b48d7e1dc13cdbf2e630ef51477762a35",
59
+ "language": "C++",
60
+ "lines": 215,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 2906
64
+ },
65
+ {
66
+ "path": "simulation/model_simlation/potentiation.cpp",
67
+ "sha256": "033425a3ef54f1f3f277af951a70644960b16520e72458c0e6f000ba9318891c",
68
+ "language": "C++",
69
+ "lines": 261,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 2978
73
+ },
74
+ {
75
+ "path": "simulation/model_simlation/simulate.cpp",
76
+ "sha256": "91ca672b8121db18d29120b5976b21d131c75988d097c3f58c70d00da38dabac",
77
+ "language": "C++",
78
+ "lines": 1566,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 3274
82
+ },
83
+ {
84
+ "path": "simulation/model_simlation/subliminal_accumulation.cpp",
85
+ "sha256": "aba91e0e76f39ddc1dd8277372264e75ddf5f7f79a0aee6089a42caf434268f6",
86
+ "language": "C++",
87
+ "lines": 221,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 2930
91
+ },
92
+ {
93
+ "path": "simulation/phase_diagram/contour.cpp",
94
+ "sha256": "e2f82765ab24d46abffa93c51e796e0e9fb3d94bbfe071ff9344b0173d9bb298",
95
+ "language": "C++",
96
+ "lines": 127,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 2764
100
+ },
101
+ {
102
+ "path": "simulation/phase_diagram/simulation.cpp",
103
+ "sha256": "7a8d873b6657bd28e7826411671513141a5051f1694ed6105e7299d2d66b95db",
104
+ "language": "C++",
105
+ "lines": 656,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 3208
109
+ },
110
+ {
111
+ "path": "simulation/sensitivity/simulation.cpp",
112
+ "sha256": "c2f2c4559a5392b059b1b1fcd702f66d343f22deccb30fecf4e44205c110c066",
113
+ "language": "C++",
114
+ "lines": 900,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 3245
118
+ }
119
+ ]
120
+ }
manifests/09/github.com__nkicsl__ddr-dataset.json ADDED
@@ -0,0 +1,30 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/nkicsl/ddr-dataset",
4
+ "url": "https://github.com/nkicsl/DDR-dataset",
5
+ "host": "github.com",
6
+ "commit": "487de6e593fed51e343e2fc75642f30edfffa0dd",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "af96932cf82f4d34291dfa2dcec11364274ba699bb09b4da3424f27499153688",
14
+ "language": "License",
15
+ "lines": 21,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 7921
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "2ada4151c8a854b1a9a80647f6aa1faa70c9d23340d5e7482d760eeeda935fe9",
23
+ "language": "Text",
24
+ "lines": 29,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2351
28
+ }
29
+ ]
30
+ }
manifests/09/github.com__rowanz__grover.json ADDED
@@ -0,0 +1,192 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/rowanz/grover",
4
+ "url": "https://github.com/rowanz/grover",
5
+ "host": "github.com",
6
+ "commit": "f59a206a8722357c351eae9e937b9f7a53bfda61",
7
+ "license": "Apache-2.0",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "f7ffbe9a6b66cf1126fd1e20ca89f7de77b16e41021bedf1889d0119946b540d",
14
+ "language": "License",
15
+ "lines": 227,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 8149
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "8e72df8c8f28ef9a7f8f89508ca6ae7fa073f1d0df1667fa68eb406f5234bb25",
23
+ "language": "Text",
24
+ "lines": 72,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2569
28
+ },
29
+ {
30
+ "path": "discrimination/run_discrimination.py",
31
+ "sha256": "a598c99f5151df30064a64ed40ad6ca71b01fce93a0a6964cb07ae3126f61734",
32
+ "language": "Python",
33
+ "lines": 339,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 26272
37
+ },
38
+ {
39
+ "path": "download_model.py",
40
+ "sha256": "fa0466b74f9add201e8163df632f126983f1b1503003f9deb02d14fcfb8b2962",
41
+ "language": "Python",
42
+ "lines": 28,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 19029
46
+ },
47
+ {
48
+ "path": "generation_examples/compute_accuracy_script.py",
49
+ "sha256": "b22a0084ee7b9c7ca5737cdb42e1088989fc3225d0329d61093394629733610b",
50
+ "language": "Python",
51
+ "lines": 62,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 20658
55
+ },
56
+ {
57
+ "path": "lm/dataloader.py",
58
+ "sha256": "5015c0a6fbc5710cf7dae534744820d657601f3b8e44d975543c829bd9cc403a",
59
+ "language": "Python",
60
+ "lines": 161,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 23910
64
+ },
65
+ {
66
+ "path": "lm/modeling.py",
67
+ "sha256": "9559ba868e50a6e2f17b35c1444fa49f38d2d57fe93e635947873889d56eebed",
68
+ "language": "Python",
69
+ "lines": 947,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 27896
73
+ },
74
+ {
75
+ "path": "lm/optimization_adafactor.py",
76
+ "sha256": "4625fbbe4ae8bce6bbbb0c10b922a3134fb0fd798eaaaa8a7e6e40eb7bc8931a",
77
+ "language": "Python",
78
+ "lines": 234,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 25157
82
+ },
83
+ {
84
+ "path": "lm/train.py",
85
+ "sha256": "c55f8cd4ba89b17b84ce42032cb703276fa6cb54cf6884e61b421e6c2d8890dd",
86
+ "language": "Python",
87
+ "lines": 157,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 23346
91
+ },
92
+ {
93
+ "path": "lm/train_tpu_adafactor.sh",
94
+ "sha256": "ecc90dd1649dd755b0700d8b6f7c891c3dbc6ff93ae3f50e30d5ad33d4c5cd0a",
95
+ "language": "Shell",
96
+ "lines": 48,
97
+ "truncated": false,
98
+ "block": 4,
99
+ "row": 1841
100
+ },
101
+ {
102
+ "path": "lm/utils.py",
103
+ "sha256": "6ea55420a246c25b95a0ef83a5ca76fa6e399da18ca12e9f9f208811657c786d",
104
+ "language": "Python",
105
+ "lines": 234,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 24650
109
+ },
110
+ {
111
+ "path": "lm/validate.py",
112
+ "sha256": "f8ff2ccc5cde1a19952e9dc6245512930f5cf40b866e2f3ac762d16d52d232d9",
113
+ "language": "Python",
114
+ "lines": 214,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 24570
118
+ },
119
+ {
120
+ "path": "lm/validate.sh",
121
+ "sha256": "ef045a43b9a95d97a1ee98b76c8086111563ee90b223036d4ddaccbeaa393568",
122
+ "language": "Shell",
123
+ "lines": 27,
124
+ "truncated": false,
125
+ "block": 4,
126
+ "row": 1619
127
+ },
128
+ {
129
+ "path": "realnews/dedupe_crawl.py",
130
+ "sha256": "0cc3df962e89c65c4a400f901842994a29835d98a8cc2c17ab0c0a0c5a66bbdf",
131
+ "language": "Python",
132
+ "lines": 321,
133
+ "truncated": false,
134
+ "block": 3,
135
+ "row": 25809
136
+ },
137
+ {
138
+ "path": "realnews/prepare_lm_data.py",
139
+ "sha256": "81904bddc473ea7a9d171e3bf4e31da528f1537aab699d8cdaf173c95100a15b",
140
+ "language": "Python",
141
+ "lines": 239,
142
+ "truncated": false,
143
+ "block": 3,
144
+ "row": 25249
145
+ },
146
+ {
147
+ "path": "realnews/prepare_lm_data.sh",
148
+ "sha256": "c849faa11ec6f6e44d589beff1af4e16755de7fe974c732759121f9d199057dc",
149
+ "language": "Shell",
150
+ "lines": 10,
151
+ "truncated": false,
152
+ "block": 4,
153
+ "row": 1472
154
+ },
155
+ {
156
+ "path": "realnews/process_ccrawl.py",
157
+ "sha256": "a4b8d410b1eb9aa5f6f7640f365be4d2649f8fee8cbd0850317090dbbdd02919",
158
+ "language": "Python",
159
+ "lines": 253,
160
+ "truncated": false,
161
+ "block": 3,
162
+ "row": 25489
163
+ },
164
+ {
165
+ "path": "realnews/process_ccrawl.sh",
166
+ "sha256": "b1176151c174b91f871b4a14b08e41d56cd78dfe818a4443918539cbde244e07",
167
+ "language": "Shell",
168
+ "lines": 8,
169
+ "truncated": false,
170
+ "block": 4,
171
+ "row": 1389
172
+ },
173
+ {
174
+ "path": "sample/contextual_generate.py",
175
+ "sha256": "9746366ac96a1f09f46057ca86dd5dbdf822f2aecea72d15565016bccdd3d558",
176
+ "language": "Python",
177
+ "lines": 171,
178
+ "truncated": false,
179
+ "block": 3,
180
+ "row": 23859
181
+ },
182
+ {
183
+ "path": "sample/encoder.py",
184
+ "sha256": "c8cb0f5adf4be391896b920420279174d063709af6c8fc50fc851860e4fd0fa4",
185
+ "language": "Python",
186
+ "lines": 402,
187
+ "truncated": false,
188
+ "block": 3,
189
+ "row": 26437
190
+ }
191
+ ]
192
+ }
manifests/09/github.com__yikunpku__rna-msm.json ADDED
@@ -0,0 +1,462 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/yikunpku/rna-msm",
4
+ "url": "https://github.com/yikunpku/RNA-MSM",
5
+ "host": "github.com",
6
+ "commit": "faadd57559c1c146effbfd84a7628cd2042d5ede",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "423fde8b633fa63af388ffcc58277cfa28c2fcde817f696a781867f4536c7655",
14
+ "language": "License",
15
+ "lines": 21,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 7913
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "d03dbb6ec72e162b00287ac39aa93a235ba3859b87dc86fb0b9e10259efc7464",
23
+ "language": "Text",
24
+ "lines": 236,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2674
28
+ },
29
+ {
30
+ "path": "RNA_MSM_Inference.py",
31
+ "sha256": "1b8c0d671f1bc2b76ab9cf4be9c9673d1ec7e7a366b22d3c826f95b70faf9716",
32
+ "language": "Python",
33
+ "lines": 172,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 23165
37
+ },
38
+ {
39
+ "path": "_downstream_tasks/RSA/model/_0713/mingpt.py",
40
+ "sha256": "b378c01f23791e3cd6a43b904a0685dcfc4fe852d10fc551e33a5ce52f0e2e1b",
41
+ "language": "Python",
42
+ "lines": 152,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 23578
46
+ },
47
+ {
48
+ "path": "_downstream_tasks/RSA/model/_0713/model_entry.py",
49
+ "sha256": "705d26042b19a33d123403e377b4fcc152582301ae0eb09951b1c13e88bcf5a8",
50
+ "language": "Python",
51
+ "lines": 145,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 23587
55
+ },
56
+ {
57
+ "path": "_downstream_tasks/RSA/model/_0713/resnet.py",
58
+ "sha256": "ac90ad89490941d5645deb6927ef5a328c3c4ae39b4be9b00fa080ea4fda0cfd",
59
+ "language": "Python",
60
+ "lines": 341,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 26082
64
+ },
65
+ {
66
+ "path": "_downstream_tasks/RSA/model/_0811/model_entry.py",
67
+ "sha256": "943702f22a9df48533853459a67ee15df024d463effec8a5e32db7df81e8c228",
68
+ "language": "Python",
69
+ "lines": 141,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 23161
73
+ },
74
+ {
75
+ "path": "_downstream_tasks/RSA/predict.py",
76
+ "sha256": "1a8fc5f34d397f661fb8f10131598d135617eec423bf58f89df67028c8b85d67",
77
+ "language": "Python",
78
+ "lines": 168,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 23693
82
+ },
83
+ {
84
+ "path": "_downstream_tasks/SS/am_onehot_run.sh",
85
+ "sha256": "fb4431178a0930edf0cde22d60304ea8a3e2de1487af18ff323d38f3f926e874",
86
+ "language": "Shell",
87
+ "lines": 1,
88
+ "truncated": false,
89
+ "block": 4,
90
+ "row": 1289
91
+ },
92
+ {
93
+ "path": "_downstream_tasks/SS/code/model.py",
94
+ "sha256": "b72ce83b577526adcb24db9a67f0d71514aceb29cf5be293c715f55fd63bf6b9",
95
+ "language": "Python",
96
+ "lines": 241,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 24843
100
+ },
101
+ {
102
+ "path": "_downstream_tasks/SS/code/post_processing/.ipynb_checkpoints/plot_prob-checkpoint.py",
103
+ "sha256": "ca1aaf2c267dbc461fc492064b186e6983745e7498456c8d1cac3c95658bc6cf",
104
+ "language": "Python",
105
+ "lines": 45,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 19221
109
+ },
110
+ {
111
+ "path": "_downstream_tasks/SS/code/post_processing/.ipynb_checkpoints/processing_output-checkpoint.py",
112
+ "sha256": "18a6685c37474e2371481e70e35cc22dbd51e88b59660831e9670bbd67cbde5d",
113
+ "language": "Python",
114
+ "lines": 253,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 25112
118
+ },
119
+ {
120
+ "path": "_downstream_tasks/SS/code/post_processing/plot_prob.py",
121
+ "sha256": "ca1aaf2c267dbc461fc492064b186e6983745e7498456c8d1cac3c95658bc6cf",
122
+ "language": "Python",
123
+ "lines": 45,
124
+ "truncated": false,
125
+ "block": 3,
126
+ "row": 19221
127
+ },
128
+ {
129
+ "path": "_downstream_tasks/SS/code/post_processing/processing_output.py",
130
+ "sha256": "ae24e6199228e5da17d84dd1fcfcd448b79f7783985655cdee00866be94bbfb0",
131
+ "language": "Python",
132
+ "lines": 253,
133
+ "truncated": false,
134
+ "block": 3,
135
+ "row": 25113
136
+ },
137
+ {
138
+ "path": "_downstream_tasks/SS/code/post_processing/utils.py",
139
+ "sha256": "2637cdbde398e44024138bb74961caa37f2652f149cd29bb7297ead9a874222c",
140
+ "language": "Python",
141
+ "lines": 325,
142
+ "truncated": false,
143
+ "block": 3,
144
+ "row": 26078
145
+ },
146
+ {
147
+ "path": "_downstream_tasks/SS/code/pre_processing/.ipynb_checkpoints/data_processing-checkpoint.py",
148
+ "sha256": "a6138ba3486aee0edc94df620e8039b869fdf1ec67f92be45c7e38bd40f6cd3f",
149
+ "language": "Python",
150
+ "lines": 48,
151
+ "truncated": false,
152
+ "block": 3,
153
+ "row": 19991
154
+ },
155
+ {
156
+ "path": "_downstream_tasks/SS/code/pre_processing/autometric.py",
157
+ "sha256": "34d29fd7c7a28282c3cf05a160bf3902d05981ce1eb748dc5041de275b29899b",
158
+ "language": "Python",
159
+ "lines": 14,
160
+ "truncated": false,
161
+ "block": 3,
162
+ "row": 18194
163
+ },
164
+ {
165
+ "path": "_downstream_tasks/SS/code/pre_processing/check_missing_nts.py",
166
+ "sha256": "5f598f6c8a6815a1ceb035f797f1df816e7d69973bce6ae4a2691991ed71a840",
167
+ "language": "Python",
168
+ "lines": 58,
169
+ "truncated": false,
170
+ "block": 3,
171
+ "row": 20194
172
+ },
173
+ {
174
+ "path": "_downstream_tasks/SS/code/pre_processing/data_fomat.py",
175
+ "sha256": "6035cb9f45b502d96f1ab6b13a260c1254ebbe59b9b209b397eaca20002bde2c",
176
+ "language": "Python",
177
+ "lines": 59,
178
+ "truncated": false,
179
+ "block": 3,
180
+ "row": 20267
181
+ },
182
+ {
183
+ "path": "_downstream_tasks/SS/code/pre_processing/data_processing.py",
184
+ "sha256": "a6138ba3486aee0edc94df620e8039b869fdf1ec67f92be45c7e38bd40f6cd3f",
185
+ "language": "Python",
186
+ "lines": 48,
187
+ "truncated": false,
188
+ "block": 3,
189
+ "row": 19991
190
+ },
191
+ {
192
+ "path": "_downstream_tasks/SS/code/pre_processing/load_am_rri.py",
193
+ "sha256": "ffec7f2a70b99863a58e466b54e617b5002369b0f1948a1f538a6327748187a8",
194
+ "language": "Python",
195
+ "lines": 45,
196
+ "truncated": false,
197
+ "block": 3,
198
+ "row": 19682
199
+ },
200
+ {
201
+ "path": "_downstream_tasks/SS/code/pre_processing/outer_concatenation.py",
202
+ "sha256": "a1d46b65d99669bc14fd6dc7ef55fdacc6f590445c6e9ae87e3a00cd9c7b1e4b",
203
+ "language": "Python",
204
+ "lines": 37,
205
+ "truncated": false,
206
+ "block": 3,
207
+ "row": 19191
208
+ },
209
+ {
210
+ "path": "_downstream_tasks/SS/code/pre_processing/processing_.py",
211
+ "sha256": "ab209b97c2cec04176643c14a69bc9319670a52c6cdeac91cc09bd65bb1db95e",
212
+ "language": "Python",
213
+ "lines": 72,
214
+ "truncated": false,
215
+ "block": 3,
216
+ "row": 21145
217
+ },
218
+ {
219
+ "path": "_downstream_tasks/SS/code/pre_processing/sequence_encode.py",
220
+ "sha256": "0de05141555b3dc4ee21a013a960d89cb32829e19e243f41448fbd3dd854088a",
221
+ "language": "Python",
222
+ "lines": 12,
223
+ "truncated": false,
224
+ "block": 3,
225
+ "row": 18279
226
+ },
227
+ {
228
+ "path": "_downstream_tasks/SS/predict.py",
229
+ "sha256": "6ec810688a7f89ba65e99ab533e2a83e74e8d3a3a56ff2fa627d6407072840e7",
230
+ "language": "Python",
231
+ "lines": 62,
232
+ "truncated": false,
233
+ "block": 3,
234
+ "row": 20585
235
+ },
236
+ {
237
+ "path": "dataset.py",
238
+ "sha256": "68cbf2036dffe2d2d7d42ef100b2db3a6b9519cd008e7b700e75a1c1e859748e",
239
+ "language": "Python",
240
+ "lines": 159,
241
+ "truncated": false,
242
+ "block": 3,
243
+ "row": 23215
244
+ },
245
+ {
246
+ "path": "lr_schedulers.py",
247
+ "sha256": "108743fb4f1f1576166279040b7e3e8fb4d16a341562538077eb0e4a9f7768db",
248
+ "language": "Python",
249
+ "lines": 177,
250
+ "truncated": false,
251
+ "block": 3,
252
+ "row": 23463
253
+ },
254
+ {
255
+ "path": "model.py",
256
+ "sha256": "8789f27c8f6b2ca0de75599843eb262d8ae6c38b1b4ff05a556cadcf535b6126",
257
+ "language": "Python",
258
+ "lines": 434,
259
+ "truncated": false,
260
+ "block": 3,
261
+ "row": 26423
262
+ },
263
+ {
264
+ "path": "modules.py",
265
+ "sha256": "23e0d40dae52db07ca61ce82f7a52b946c9529ffb8ca82b5b0a8b294fd2373fc",
266
+ "language": "Python",
267
+ "lines": 945,
268
+ "truncated": false,
269
+ "block": 3,
270
+ "row": 27624
271
+ },
272
+ {
273
+ "path": "msm/__init__.py",
274
+ "sha256": "da4b865b60c3c1259678bc7147ce9917ff9191d8ef2d1a0a6e7d7428e33fc7be",
275
+ "language": "Python",
276
+ "lines": 10,
277
+ "truncated": false,
278
+ "block": 3,
279
+ "row": 18212
280
+ },
281
+ {
282
+ "path": "msm/axial_attention.py",
283
+ "sha256": "2b1433abe19a4821346f4715271dacfbea1435e95c6f2e335812e5af41087180",
284
+ "language": "Python",
285
+ "lines": 239,
286
+ "truncated": false,
287
+ "block": 3,
288
+ "row": 24773
289
+ },
290
+ {
291
+ "path": "msm/constants.py",
292
+ "sha256": "4b50cc563799a587f0849f059618c8cb3526258331e4be7642b314764c0ee7fb",
293
+ "language": "Python",
294
+ "lines": 13,
295
+ "truncated": false,
296
+ "block": 3,
297
+ "row": 18254
298
+ },
299
+ {
300
+ "path": "msm/data.py",
301
+ "sha256": "6880b024882a942de51da74430e6cecbf6852f84fe4cc22fdd3d87e730774a7f",
302
+ "language": "Python",
303
+ "lines": 491,
304
+ "truncated": false,
305
+ "block": 3,
306
+ "row": 26718
307
+ },
308
+ {
309
+ "path": "msm/model.py",
310
+ "sha256": "4646f4a7890d45ef09e7d6d5389c55fc18215b0e15c98ef78322d7f576a97112",
311
+ "language": "Python",
312
+ "lines": 423,
313
+ "truncated": false,
314
+ "block": 3,
315
+ "row": 26488
316
+ },
317
+ {
318
+ "path": "msm/modules.py",
319
+ "sha256": "14e527b499953d2cada7c1d70b3e3d7f9b4d098e3a21216494b67cf38730a143",
320
+ "language": "Python",
321
+ "lines": 416,
322
+ "truncated": false,
323
+ "block": 3,
324
+ "row": 26230
325
+ },
326
+ {
327
+ "path": "msm/multihead_attention.py",
328
+ "sha256": "6d35cb02f84f07a28b0a9482489b610140eb9c7baae6e00cd84cacea99c170d2",
329
+ "language": "Python",
330
+ "lines": 500,
331
+ "truncated": false,
332
+ "block": 3,
333
+ "row": 27046
334
+ },
335
+ {
336
+ "path": "product_key_memory.py",
337
+ "sha256": "db017d53ea136c605a7b4888921934c9e1a970b587f820b9784f0d37ef008421",
338
+ "language": "Python",
339
+ "lines": 99,
340
+ "truncated": false,
341
+ "block": 3,
342
+ "row": 21482
343
+ },
344
+ {
345
+ "path": "utils/__init__.py",
346
+ "sha256": "91447944015cec709e8aa7655f7e9d64e1e4508e7023a57fe3746911c0fc6fed",
347
+ "language": "Python",
348
+ "lines": 1,
349
+ "truncated": false,
350
+ "block": 3,
351
+ "row": 17352
352
+ },
353
+ {
354
+ "path": "utils/align.py",
355
+ "sha256": "23d8e98b9fd0ff59544f3b4f04da83630cdf342d1aa956d3e7c206c391873f18",
356
+ "language": "Python",
357
+ "lines": 343,
358
+ "truncated": false,
359
+ "block": 3,
360
+ "row": 25962
361
+ },
362
+ {
363
+ "path": "utils/dataset.py",
364
+ "sha256": "38b508bc9102e919ab71aea1a0c5e34b719d7152eca9ab9f8d8f275aa3e75295",
365
+ "language": "Python",
366
+ "lines": 752,
367
+ "truncated": false,
368
+ "block": 3,
369
+ "row": 27369
370
+ },
371
+ {
372
+ "path": "utils/distribute.py",
373
+ "sha256": "e512338a0d5b6d4b929017a4c7942b5cd3941e62c85b8b7050bf68cd62e5449f",
374
+ "language": "Python",
375
+ "lines": 38,
376
+ "truncated": false,
377
+ "block": 3,
378
+ "row": 18977
379
+ },
380
+ {
381
+ "path": "utils/ffindex.py",
382
+ "sha256": "eec75c2e4b7b791b121d8e00725c1eb2650e94b375b02056d87d4698c1386e03",
383
+ "language": "Python",
384
+ "lines": 191,
385
+ "truncated": false,
386
+ "block": 3,
387
+ "row": 23494
388
+ },
389
+ {
390
+ "path": "utils/likelihood.py",
391
+ "sha256": "2a3c9f2c073a8980d0603604d0255090a7ec365847156d6995bf02946663debc",
392
+ "language": "Python",
393
+ "lines": 202,
394
+ "truncated": false,
395
+ "block": 3,
396
+ "row": 23442
397
+ },
398
+ {
399
+ "path": "utils/metrics.py",
400
+ "sha256": "92369153f772afb086d02fca18db5598c17fd4f7655d7a1a7d35d432dbee8eaa",
401
+ "language": "Python",
402
+ "lines": 252,
403
+ "truncated": false,
404
+ "block": 3,
405
+ "row": 25474
406
+ },
407
+ {
408
+ "path": "utils/parsing.py",
409
+ "sha256": "5f7d26a7eb6970ce9b3615dd16fbac9adf1711ab83400b0f0e95aa9ac53060a7",
410
+ "language": "Python",
411
+ "lines": 289,
412
+ "truncated": false,
413
+ "block": 3,
414
+ "row": 25093
415
+ },
416
+ {
417
+ "path": "utils/sequence.py",
418
+ "sha256": "3b6423b39f55d9007926e3fada95b740c697a028b80939976e5932304425bc86",
419
+ "language": "Python",
420
+ "lines": 84,
421
+ "truncated": false,
422
+ "block": 3,
423
+ "row": 20990
424
+ },
425
+ {
426
+ "path": "utils/structure.py",
427
+ "sha256": "5b38d8bee16ea10b4e0ae1258d77dcede065b2a7c9bd93215377edb93731e69f",
428
+ "language": "Python",
429
+ "lines": 187,
430
+ "truncated": false,
431
+ "block": 3,
432
+ "row": 23173
433
+ },
434
+ {
435
+ "path": "utils/tensor.py",
436
+ "sha256": "5a7efd78a8bf885c5410e5cdf223bb5b758da7557ef0b870682ee61e9579020e",
437
+ "language": "Python",
438
+ "lines": 128,
439
+ "truncated": false,
440
+ "block": 3,
441
+ "row": 21878
442
+ },
443
+ {
444
+ "path": "utils/tokenization.py",
445
+ "sha256": "809679e77303d5443924dff088635f9cfb286f99280809351ba3c3bc7570a0a9",
446
+ "language": "Python",
447
+ "lines": 270,
448
+ "truncated": false,
449
+ "block": 3,
450
+ "row": 25255
451
+ },
452
+ {
453
+ "path": "utils/typed.py",
454
+ "sha256": "85b2e909eb22143bd28f92950e57ae124f57d43b0f104063636369d21d8388a6",
455
+ "language": "Python",
456
+ "lines": 43,
457
+ "truncated": false,
458
+ "block": 3,
459
+ "row": 19272
460
+ }
461
+ ]
462
+ }
manifests/09/zenodo__19731482.json ADDED
@@ -0,0 +1,57 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "zenodo:19731482",
4
+ "url": "https://doi.org/10.5281/zenodo.19731482",
5
+ "host": "zenodo.org",
6
+ "commit": "",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "bc9921a854c189606fd94f870e25aed5b76e0cfb79292f999717956342762a97",
14
+ "language": "License",
15
+ "lines": 21,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 8046
19
+ },
20
+ {
21
+ "path": "R/RegRegSEA.R",
22
+ "sha256": "f87a8159c48d2fbccb8d3019d211538a67956167d3afa656987c94f9c3b39f07",
23
+ "language": "R",
24
+ "lines": 561,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 1082
28
+ },
29
+ {
30
+ "path": "R/plotting.R",
31
+ "sha256": "7a03a3652882bd10a2429da979d7309ded9a3e95734f7dbf3ac9dd1bb0db07cb",
32
+ "language": "R",
33
+ "lines": 236,
34
+ "truncated": false,
35
+ "block": 4,
36
+ "row": 835
37
+ },
38
+ {
39
+ "path": "README.md",
40
+ "sha256": "3245a66f34804adef6a6dd1e0f3172a0f7ffa37291128d4a265796090b0fa06b",
41
+ "language": "Text",
42
+ "lines": 151,
43
+ "truncated": false,
44
+ "block": 4,
45
+ "row": 2594
46
+ },
47
+ {
48
+ "path": "vignettes/RegRegSEA-introduction.Rmd",
49
+ "sha256": "d61c0dedf0f45c05de0c6257680f25b40e4189e3e6583f915188378c7396adc9",
50
+ "language": "R",
51
+ "lines": 189,
52
+ "truncated": false,
53
+ "block": 4,
54
+ "row": 620
55
+ }
56
+ ]
57
+ }
manifests/09/zenodo__20118606.json ADDED
@@ -0,0 +1,930 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "zenodo:20118606",
4
+ "url": "10.5281/zenodo.20118606",
5
+ "host": "zenodo.org",
6
+ "commit": "",
7
+ "license": "GPL-3.0",
8
+ "license_confirmed_by": "license file IJ_NeuriteGrowthScript.zip/LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/ImageJ_macros/_shared/Proc.py",
13
+ "sha256": "16bbe8b5fb72dd37123830492f5534394e7bf45252757be5c7de91dbcc43c77f",
14
+ "language": "Python",
15
+ "lines": 147,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 23046
19
+ },
20
+ {
21
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/ImageJ_macros/fig03/fig03or_perfusion_channel_split_merge__20241106_1_6dc029b9.py",
22
+ "sha256": "c25ff240cfa8546027445cabb2cc7671bfb2bfa4f076129b76474d4a4c1f1b5e",
23
+ "language": "Python",
24
+ "lines": 54,
25
+ "truncated": false,
26
+ "block": 3,
27
+ "row": 20339
28
+ },
29
+ {
30
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/ImageJ_macros/fig03/fig03or_perfusion_channel_split_merge__dmso_control_77764998.py",
31
+ "sha256": "11dd3f78a7ba2c40c7d127c1cd786877e9565316dbea53628afb8d8926e57161",
32
+ "language": "Python",
33
+ "lines": 71,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 21451
37
+ },
38
+ {
39
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/ImageJ_macros/fig03/fig03or_perfusion_channel_split_merge__fig_3o-r_local_perfusion_eeb3073b.py",
40
+ "sha256": "65f7dc2cafaa856a273390988fe37ec8da50e4cfecac889c7781faf699628f79",
41
+ "language": "Python",
42
+ "lines": 88,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 22304
46
+ },
47
+ {
48
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/ImageJ_macros/fig03/fig03or_perfusion_channel_split_merge__imagej_macro_6dc029b9.py",
49
+ "sha256": "2b3da6809f5a0a84bfa51a8a8492d94c1b30577b2f34c1c3a5a82ca47c33bd3f",
50
+ "language": "Python",
51
+ "lines": 54,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 20331
55
+ },
56
+ {
57
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/ImageJ_macros/fig03/fig03or_perfusion_channel_split_merge__imagej_macro_77764998.py",
58
+ "sha256": "9d556a58e39ef6d1f60b0b6bdc90649488fc15618958688ad5489f66daf2a3d8",
59
+ "language": "Python",
60
+ "lines": 71,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 21453
64
+ },
65
+ {
66
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/LICENSE",
67
+ "sha256": "f41598b61f72e9d4fe7aa5c151cc1d053790095b20898312efba28d00045a5a0",
68
+ "language": "License",
69
+ "lines": 28,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 8119
73
+ },
74
+ {
75
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/README.md",
76
+ "sha256": "7ceed740efd4b2f0213546a18e1ebea1393cfdbdcb6e631f9887e155c52ed849",
77
+ "language": "Text",
78
+ "lines": 64,
79
+ "truncated": false,
80
+ "block": 4,
81
+ "row": 2477
82
+ },
83
+ {
84
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig01_coordination/edfig01be_2d_culture_neurite_freq_and_xcorr_pooled.Rmd",
85
+ "sha256": "00a6b707779c4cd52ef222cb7532dfc257a693ad8026d14fa90402bae34e375e",
86
+ "language": "R",
87
+ "lines": 36,
88
+ "truncated": false,
89
+ "block": 4,
90
+ "row": 284
91
+ },
92
+ {
93
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig01_coordination/edfig01c_fig01f_slice_neurite_freq_and_xcorr.Rmd",
94
+ "sha256": "9ab8394affa6165b190c767df8f00e678c8398eb106a961ce06d7beca69040ea",
95
+ "language": "R",
96
+ "lines": 828,
97
+ "truncated": false,
98
+ "block": 4,
99
+ "row": 1132
100
+ },
101
+ {
102
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig02_actin/edfig02c_neurite_actin_xcorr_pooled_sd.Rmd",
103
+ "sha256": "09537d81f361ef291409d08ff3d5ff569bb5e6e8f4bf4e66faa07f91d04f10f4",
104
+ "language": "R",
105
+ "lines": 46,
106
+ "truncated": false,
107
+ "block": 4,
108
+ "row": 349
109
+ },
110
+ {
111
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig02_actin/edfig02ef_lyn_lifeact_neurite_xcorr.Rmd",
112
+ "sha256": "f7236e4b7b70b5385d208fe9e10f9120c7070d0ae6c3f87cfcd8a260382839e3",
113
+ "language": "R",
114
+ "lines": 1074,
115
+ "truncated": false,
116
+ "block": 4,
117
+ "row": 1162
118
+ },
119
+ {
120
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig02_actin/edfig02i_polarized_neurons_actin_wave_count.Rmd",
121
+ "sha256": "3e68880fdbf06e04ca1f778b654d333d7ae8b1fc6b0c84489c6bab2ce91c5005",
122
+ "language": "R",
123
+ "lines": 269,
124
+ "truncated": false,
125
+ "block": 4,
126
+ "row": 878
127
+ },
128
+ {
129
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig02_actin/edfig02jk_polarized_neurons_duration_velocity.Rmd",
130
+ "sha256": "b3773c101ec53105582ffd01f74b088c6bad340465e7839b859151d2e6c8a6df",
131
+ "language": "R",
132
+ "lines": 1519,
133
+ "truncated": false,
134
+ "block": 4,
135
+ "row": 1211
136
+ },
137
+ {
138
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig02_actin/edfig02jklm_polarized_neuron_dynamics_d_drive.Rmd",
139
+ "sha256": "a35af895a0ad508f8ff1bb5b4758bd908307c76301f161567359668b0ffea98d",
140
+ "language": "R",
141
+ "lines": 1642,
142
+ "truncated": false,
143
+ "block": 4,
144
+ "row": 1214
145
+ },
146
+ {
147
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig02_actin/edfig02lm_polarized_neurons_growth_actin_lyn_ccf.Rmd",
148
+ "sha256": "0fa6f54a78d32ec60ee6bfaf74309d303cb7a0a9f7d8792a199f588430d0474c",
149
+ "language": "R",
150
+ "lines": 1169,
151
+ "truncated": false,
152
+ "block": 4,
153
+ "row": 1176
154
+ },
155
+ {
156
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig03_Arp3/edfig03b_factin_rab11a_line_profile_coloc.Rmd",
157
+ "sha256": "7d197bb8824304a26fe0e38655a5ba531904228c9883477d705af463167a7630",
158
+ "language": "R",
159
+ "lines": 240,
160
+ "truncated": false,
161
+ "block": 4,
162
+ "row": 809
163
+ },
164
+ {
165
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig03_Arp3/edfig03b_rab11_arp3_actin_coloc_consolidator.Rmd",
166
+ "sha256": "88d1cef82974a2726dd7b7407725aad2f6c894534330b9383b569e17f965a971",
167
+ "language": "R",
168
+ "lines": 227,
169
+ "truncated": false,
170
+ "block": 4,
171
+ "row": 770
172
+ },
173
+ {
174
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig03_Arp3/edfig03b_rab11a_actin_line_ccf_d_drive.Rmd",
175
+ "sha256": "b90ed7ef26e6b8bad14c3b92cc6ab8c8c3a4daa5453044fe0192fda9eaaf3b48",
176
+ "language": "R",
177
+ "lines": 237,
178
+ "truncated": false,
179
+ "block": 4,
180
+ "row": 804
181
+ },
182
+ {
183
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig03_Arp3/edfig03ef_arp3_patch_diffusion_lifetime.Rmd",
184
+ "sha256": "8083ade1a62a218fd8f600c2f78ad058284b7adeec25b260f5324154a65b165b",
185
+ "language": "R",
186
+ "lines": 428,
187
+ "truncated": false,
188
+ "block": 4,
189
+ "row": 1014
190
+ },
191
+ {
192
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig03_Arp3/edfig03ef_arp3_patch_velocity_lifetime_d_drive.Rmd",
193
+ "sha256": "281804e574c8b165a929b9d7f57f784c86e4b65471cedadcc555f6b797200004",
194
+ "language": "R",
195
+ "lines": 397,
196
+ "truncated": false,
197
+ "block": 4,
198
+ "row": 997
199
+ },
200
+ {
201
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig03_Arp3/edfig03m_kif5c_neurite_corr.Rmd",
202
+ "sha256": "e80bb2901fdc29267b353ebbec07378a87bd482af91dad110bd18a81b192fa3a",
203
+ "language": "R",
204
+ "lines": 1178,
205
+ "truncated": false,
206
+ "block": 4,
207
+ "row": 1175
208
+ },
209
+ {
210
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig03_Arp3/edfig03n_kif5c_parent_neurite_corr.Rmd",
211
+ "sha256": "de92d798aa94efda58c1165cb68c2f3349910c4fb9e02668bbbbd9651295f720",
212
+ "language": "R",
213
+ "lines": 1697,
214
+ "truncated": false,
215
+ "block": 4,
216
+ "row": 1215
217
+ },
218
+ {
219
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig03_Arp3/edfig03no_kif5c_arp3ko_velocity_ccf_d_drive.Rmd",
220
+ "sha256": "874030bd5515a21280ed84c7d49ef8f1106893ec16382760be57857bf3d18fac",
221
+ "language": "R",
222
+ "lines": 1650,
223
+ "truncated": false,
224
+ "block": 4,
225
+ "row": 1206
226
+ },
227
+ {
228
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig03_Arp3/edfig03no_kif5c_wt_velocity_ccf_d_drive.Rmd",
229
+ "sha256": "c003c2669067bc19ec6cff00e812145c82c0d4c9a15aa49fd6b334748c78f4f8",
230
+ "language": "R",
231
+ "lines": 1701,
232
+ "truncated": false,
233
+ "block": 4,
234
+ "row": 1216
235
+ },
236
+ {
237
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig03_Arp3/edfig03q_actin_radial_flow_kymo.Rmd",
238
+ "sha256": "570e85bc9f3d581dc680fcdd7fcd9498a0db7fde8bfc2633599658b3cd3ae61a",
239
+ "language": "R",
240
+ "lines": 205,
241
+ "truncated": false,
242
+ "block": 4,
243
+ "row": 722
244
+ },
245
+ {
246
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig03_Arp3/edfig03q_actin_radial_flow_wilcoxon.Rmd",
247
+ "sha256": "ba867407b067ab0cb156fc0b527ae67802d1f82c58e6373a90d96ae6216bcd29",
248
+ "language": "R",
249
+ "lines": 154,
250
+ "truncated": false,
251
+ "block": 4,
252
+ "row": 604
253
+ },
254
+ {
255
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig04_CK666/edfig04h_morpho_quant_ck666_washout.Rmd",
256
+ "sha256": "0c67f4c32a237cf3ac20ef1d3da792b47afbd54927ec4948a024e22fdfb32975",
257
+ "language": "R",
258
+ "lines": 425,
259
+ "truncated": false,
260
+ "block": 4,
261
+ "row": 987
262
+ },
263
+ {
264
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig05_PARac1/edfig05be_parac1_lamellipod_diff_intensity.Rmd",
265
+ "sha256": "7912bf7142de6c974d340d83cccdf12c532bd90114abfbc5a6c15dfd47afc25e",
266
+ "language": "R",
267
+ "lines": 650,
268
+ "truncated": false,
269
+ "block": 4,
270
+ "row": 1099
271
+ },
272
+ {
273
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig05_PARac1/edfig05h_parac1_soma_lamellipod_intensity_timecourse.Rmd",
274
+ "sha256": "f8bfe7a4c766781845f955c4991c8cea0438e005718085cfa1fcb96a7f0bf45a",
275
+ "language": "R",
276
+ "lines": 188,
277
+ "truncated": false,
278
+ "block": 4,
279
+ "row": 749
280
+ },
281
+ {
282
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig05_PARac1/edfig05i_microperfusion_ck666_soma_length_dmso_control.Rmd",
283
+ "sha256": "fb70e0a2144bc9777041ccb61a160276ce848b7f6295cb92ff52e5b63d48945a",
284
+ "language": "R",
285
+ "lines": 505,
286
+ "truncated": false,
287
+ "block": 4,
288
+ "row": 1060
289
+ },
290
+ {
291
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig06_myosin/edfig06_arp3_mrlc_coloc_soma_stats.Rmd",
292
+ "sha256": "023b8cd3973434d68f5cc1cd14b77eed1cc3b63f4574a3723d2cca817c6b2cfe",
293
+ "language": "R",
294
+ "lines": 183,
295
+ "truncated": false,
296
+ "block": 4,
297
+ "row": 653
298
+ },
299
+ {
300
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig06_myosin/edfig06d_arp3_actin_mrlc_line_ccf_d_drive.Rmd",
301
+ "sha256": "707670a7def698ebe707a9710b2f3a4f2ef0e4bc7716089e644f2f09bcb68586",
302
+ "language": "R",
303
+ "lines": 332,
304
+ "truncated": false,
305
+ "block": 4,
306
+ "row": 913
307
+ },
308
+ {
309
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig06_myosin/edfig06d_soma_patch_line_profile_coloc.Rmd",
310
+ "sha256": "93f9d062aea5884460fd0df5df38be624c180c392adca3eca7b1abad908c15aa",
311
+ "language": "R",
312
+ "lines": 338,
313
+ "truncated": false,
314
+ "block": 4,
315
+ "row": 915
316
+ },
317
+ {
318
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig06_myosin/edfig06e_mrlc_arp3_patch_lifetime_d_drive.Rmd",
319
+ "sha256": "5b9f44116fdc8b1cde968059cd9958343d913b12f54fd40974babd34602adc35",
320
+ "language": "R",
321
+ "lines": 517,
322
+ "truncated": false,
323
+ "block": 4,
324
+ "row": 1058
325
+ },
326
+ {
327
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig06_myosin/edfig06g_arp3_factin_airyscan_line_profile_coloc.Rmd",
328
+ "sha256": "a8cb03819bc99786b64b5c5ce47159f732da6206b6ed3edb7b0b7f620a13fc4f",
329
+ "language": "R",
330
+ "lines": 231,
331
+ "truncated": false,
332
+ "block": 4,
333
+ "row": 799
334
+ },
335
+ {
336
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig06_myosin/edfig06g_patch_profile_corr_canonical.Rmd",
337
+ "sha256": "9809ab448bb2781cc293705cd970f478be393770014c039aa56b6385eb4c2f71",
338
+ "language": "R",
339
+ "lines": 323,
340
+ "truncated": false,
341
+ "block": 4,
342
+ "row": 912
343
+ },
344
+ {
345
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig06_myosin/edfig06hl_arp3_mrlc_growth_xcorr_lsm.Rmd",
346
+ "sha256": "bd60a31224a20f00249a3799d5805f32a02bcdac48ea340be12cd77829e94d24",
347
+ "language": "R",
348
+ "lines": 1409,
349
+ "truncated": false,
350
+ "block": 4,
351
+ "row": 1204
352
+ },
353
+ {
354
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig07_PARac1_CK666/edfig07b_parablebb_gc_neurite_length.Rmd",
355
+ "sha256": "d833964d59a340d22b90c9fa0112de7ded4d92823fe2e999791279e0e526a8fb",
356
+ "language": "R",
357
+ "lines": 392,
358
+ "truncated": false,
359
+ "block": 4,
360
+ "row": 1001
361
+ },
362
+ {
363
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig07_PARac1_CK666/edfig07d_parablebb_soma_length.Rmd",
364
+ "sha256": "f7289c8b62639081e87410b5bf4a82c5eebf4946bd1681253a50e1907333c6a9",
365
+ "language": "R",
366
+ "lines": 309,
367
+ "truncated": false,
368
+ "block": 4,
369
+ "row": 880
370
+ },
371
+ {
372
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig07_PARac1_CK666/edfig07hi_parac1_mrlc_roi_pre_act_post.Rmd",
373
+ "sha256": "78c9e625086e40ece8a0a8284bfa3bea1b80f7dfaea04ffb681411e468dde788",
374
+ "language": "R",
375
+ "lines": 212,
376
+ "truncated": false,
377
+ "block": 4,
378
+ "row": 794
379
+ },
380
+ {
381
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig07_PARac1_CK666/edfig07l_mrlc_patch_size_count_timecourse.Rmd",
382
+ "sha256": "09a3806bf3416e21858665d8fbdffd5149813afda33d53e7788a9a6155df168b",
383
+ "language": "R",
384
+ "lines": 172,
385
+ "truncated": false,
386
+ "block": 4,
387
+ "row": 668
388
+ },
389
+ {
390
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig08_Arp3KO/edfig08pq_arp3b_rescue_neurite_quantreg.R",
391
+ "sha256": "18e92415bea463df9bcc068a312c0319a2a5a77702761dadae57cd29bb499ed4",
392
+ "language": "R",
393
+ "lines": 100,
394
+ "truncated": false,
395
+ "block": 4,
396
+ "row": 572
397
+ },
398
+ {
399
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig09_Arp3KO_blots/edfig09i_western_blot_mlc_arp3_quant.Rmd",
400
+ "sha256": "150508475013e33c598bed1bb42d112f086cb7a15af21810dd2483f1afe7a650",
401
+ "language": "R",
402
+ "lines": 221,
403
+ "truncated": false,
404
+ "block": 4,
405
+ "row": 826
406
+ },
407
+ {
408
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig10_em/color_model.py",
409
+ "sha256": "ec8080e88ad34c06117a1668cd9a0409a34b1c7d1d13ae06865e333c320bc354",
410
+ "language": "Python",
411
+ "lines": 265,
412
+ "truncated": false,
413
+ "block": 3,
414
+ "row": 25678
415
+ },
416
+ {
417
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig10_em/color_model_batch.py",
418
+ "sha256": "1da40195bcd0e81e26c19beccca3dfae58d4419bc36e44cc6d5eeccb8df42a19",
419
+ "language": "Python",
420
+ "lines": 118,
421
+ "truncated": false,
422
+ "block": 3,
423
+ "row": 22851
424
+ },
425
+ {
426
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig10_em/edfig10e_actin_filament_orientation_distribution.Rmd",
427
+ "sha256": "6656ca18f69953462e8a93aecacba2c8cc00b99350d6cedb95963c58805c6671",
428
+ "language": "R",
429
+ "lines": 404,
430
+ "truncated": false,
431
+ "block": 4,
432
+ "row": 1009
433
+ },
434
+ {
435
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig10_em/object_mod.py",
436
+ "sha256": "42bf40861fa510fb52594e9047003466975cd85c0888d966b7af3a4a13d2690d",
437
+ "language": "Python",
438
+ "lines": 150,
439
+ "truncated": false,
440
+ "block": 3,
441
+ "row": 23857
442
+ },
443
+ {
444
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig11_microtubules/edfig11df_eb3_div2_ck666_raw_d_drive.Rmd",
445
+ "sha256": "d716f6ce6e4f620668cc9a2c9c2bb0eebe7bebaa47268a8d0240387affaca05d",
446
+ "language": "R",
447
+ "lines": 36,
448
+ "truncated": false,
449
+ "block": 4,
450
+ "row": 301
451
+ },
452
+ {
453
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig11_microtubules/edfig11df_eb3_div2_decon_cropped_d_drive.Rmd",
454
+ "sha256": "7a9f86767048e7242026ea4967da2981c8e5f87dba2ae52a95bac441f4b6d967",
455
+ "language": "R",
456
+ "lines": 40,
457
+ "truncated": false,
458
+ "block": 4,
459
+ "row": 334
460
+ },
461
+ {
462
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig11_microtubules/edfig11df_eb3_div3_ck666_decon_d_drive.Rmd",
463
+ "sha256": "3927ed415407a2e3755bef3d3e2a6f004094e217689e4810d52d2f663c47c7d2",
464
+ "language": "R",
465
+ "lines": 35,
466
+ "truncated": false,
467
+ "block": 4,
468
+ "row": 277
469
+ },
470
+ {
471
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig11_microtubules/edfig11df_eb3_div4_ck666_raw_d_drive.Rmd",
472
+ "sha256": "3358c20884b5103586d02db3c1ae556e17341a68b7e213886f8765aa59030e7b",
473
+ "language": "R",
474
+ "lines": 35,
475
+ "truncated": false,
476
+ "block": 4,
477
+ "row": 278
478
+ },
479
+ {
480
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig11_microtubules/edfig11f_eb3_tip_integrated_intensity.Rmd",
481
+ "sha256": "b758adfdc7ada60cd09f8d71b0903ed7e6e2714899bfa299d4397d3b499824aa",
482
+ "language": "R",
483
+ "lines": 345,
484
+ "truncated": false,
485
+ "block": 4,
486
+ "row": 887
487
+ },
488
+ {
489
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig11_microtubules/edfig11g_axon_retraction_loglinear.Rmd",
490
+ "sha256": "9455304161501cd8483b984de4f7e3a88fa6c5517ce0821e4e31cee53fd41766",
491
+ "language": "R",
492
+ "lines": 223,
493
+ "truncated": false,
494
+ "block": 4,
495
+ "row": 756
496
+ },
497
+ {
498
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig11_microtubules/edfig11i_soma_eb3_intensity_timecourse.Rmd",
499
+ "sha256": "7727ad769ecdee08755e87b8eba9cf9e1a40fb8723124386d365c3c184bc5195",
500
+ "language": "R",
501
+ "lines": 303,
502
+ "truncated": false,
503
+ "block": 4,
504
+ "row": 923
505
+ },
506
+ {
507
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig12_blebb_cytoD/edfig12h_tau_polarization_neurite_length.Rmd",
508
+ "sha256": "2a6140f181f56f4c0490f267ba3a666f92a3ffedcd048d528e37d7dc7d0c7de2",
509
+ "language": "R",
510
+ "lines": 483,
511
+ "truncated": false,
512
+ "block": 4,
513
+ "row": 1050
514
+ },
515
+ {
516
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/EDFig12_blebb_cytoD/edfig12lm_cytod_rescue_neurite_quantreg.R",
517
+ "sha256": "6752ada07777bcefc812a574b577f7eba4ade86ed44645f1fbb0f35476c3cbf5",
518
+ "language": "R",
519
+ "lines": 131,
520
+ "truncated": false,
521
+ "block": 4,
522
+ "row": 686
523
+ },
524
+ {
525
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig01_coordination/fig01ef_neurite_xcorr_culture_slice.Rmd",
526
+ "sha256": "4f6fbc74baaf7a3a6da88fbb8f1a9bf187ab27c3ebcdf1351205c919d280549a",
527
+ "language": "R",
528
+ "lines": 829,
529
+ "truncated": false,
530
+ "block": 4,
531
+ "row": 1134
532
+ },
533
+ {
534
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig01_coordination/fig01ikl_slice_wave_count_axonal_neurite_growth.Rmd",
535
+ "sha256": "1beca4ed3a185c866a0d20cec113e8a03c968764273e3413403357d4d75faffb",
536
+ "language": "R",
537
+ "lines": 376,
538
+ "truncated": false,
539
+ "block": 4,
540
+ "row": 968
541
+ },
542
+ {
543
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig02_actin_wave/fig02c_neurite_actin_xcorr.Rmd",
544
+ "sha256": "1f91dfec5a1104f16628af3a4fa8591fa9468bc726413498344877502168c224",
545
+ "language": "R",
546
+ "lines": 1121,
547
+ "truncated": false,
548
+ "block": 4,
549
+ "row": 1165
550
+ },
551
+ {
552
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig02_actin_wave/fig02d_soma_actin_intensity_pre_wave.Rmd",
553
+ "sha256": "e7b3f7e9502158972500934999e82959702b868193832025d61dccb3d44d60dc",
554
+ "language": "R",
555
+ "lines": 628,
556
+ "truncated": false,
557
+ "block": 4,
558
+ "row": 1089
559
+ },
560
+ {
561
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig02_actin_wave/fig02di_actin_wave_soma_ccf_d_drive.Rmd",
562
+ "sha256": "039c18f2f76b884502afc24c1713044441b5c6745a24df4ad836c61140161783",
563
+ "language": "R",
564
+ "lines": 1117,
565
+ "truncated": false,
566
+ "block": 4,
567
+ "row": 1167
568
+ },
569
+ {
570
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig02_actin_wave/fig02e_neurite_actin_xcorr_culture.Rmd",
571
+ "sha256": "6a5a29e112745e8472bc40ae2dbbeaf0a42eb01cba7bb5d5f932ff9d3798d058",
572
+ "language": "R",
573
+ "lines": 1140,
574
+ "truncated": false,
575
+ "block": 4,
576
+ "row": 1171
577
+ },
578
+ {
579
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig02_actin_wave/fig02hi_actin_wave_count_polarization.Rmd",
580
+ "sha256": "d0d8790225d01dba67b5bdf019d9b178a0ec9e595b6f0657bf53588ee0b82789",
581
+ "language": "R",
582
+ "lines": 402,
583
+ "truncated": false,
584
+ "block": 4,
585
+ "row": 1011
586
+ },
587
+ {
588
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig02_actin_wave/fig02jk_neurite_actin_xcorr_polarized.Rmd",
589
+ "sha256": "f9d05b248d3e9d727aa6c4ef49fe80a7bc0b96d305c50db68e0971533d7ae7da",
590
+ "language": "R",
591
+ "lines": 1113,
592
+ "truncated": false,
593
+ "block": 4,
594
+ "row": 1166
595
+ },
596
+ {
597
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig02_actin_wave/fig02jkl_polarization_transition_d_drive.Rmd",
598
+ "sha256": "fbb5e12b231a9658bdbd8dd7e06d76e0a2c9cb148fa1ba4e8713730a47819b8d",
599
+ "language": "R",
600
+ "lines": 2816,
601
+ "truncated": false,
602
+ "block": 4,
603
+ "row": 1236
604
+ },
605
+ {
606
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig02_actin_wave/fig02l_neurite_actin_xcorr_polarization_transition.Rmd",
607
+ "sha256": "1931366a73e3bb7787298bed34f3681921cd1fae8880c84dc07a670d657b0da4",
608
+ "language": "R",
609
+ "lines": 2822,
610
+ "truncated": false,
611
+ "block": 4,
612
+ "row": 1237
613
+ },
614
+ {
615
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig03_Arp3/fig03i_axon_retraction_by_div_t_test.Rmd",
616
+ "sha256": "582db3703b5f43f724de94fc2c467d618082103b5525df6d1f7ddc5002dbb0e9",
617
+ "language": "R",
618
+ "lines": 147,
619
+ "truncated": false,
620
+ "block": 4,
621
+ "row": 651
622
+ },
623
+ {
624
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig03_Arp3/fig03n_parac1_arp3ko_pre_act_post_precursor.Rmd",
625
+ "sha256": "1f0d986a2121239b11c94ae389b5f2a0935ee7e13e65078e59974285da72b092",
626
+ "language": "R",
627
+ "lines": 113,
628
+ "truncated": false,
629
+ "block": 4,
630
+ "row": 527
631
+ },
632
+ {
633
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig03_Arp3/fig03n_parac1_c450m_pre_act_post_precursor.Rmd",
634
+ "sha256": "56560bbb1cd8548cf85ab6bde7d576687da953ad9bf8325d83a8a2e687e50257",
635
+ "language": "R",
636
+ "lines": 108,
637
+ "truncated": false,
638
+ "block": 4,
639
+ "row": 506
640
+ },
641
+ {
642
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig03_Arp3/fig03n_parac1_gc_soma_length.Rmd",
643
+ "sha256": "0d48d3af559091083283e0e92524731293c0af6474de67aeb6daebb799f8f053",
644
+ "language": "R",
645
+ "lines": 402,
646
+ "truncated": false,
647
+ "block": 4,
648
+ "row": 1017
649
+ },
650
+ {
651
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig03_Arp3/fig03n_parac1_t17n_pre_act_post_precursor.Rmd",
652
+ "sha256": "30678ef96893dd087ee3154b60a66cb99f581c2c5a04cd54da5a9a99e3a4e15e",
653
+ "language": "R",
654
+ "lines": 103,
655
+ "truncated": false,
656
+ "block": 4,
657
+ "row": 513
658
+ },
659
+ {
660
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig03_Arp3/fig03r_microperfusion_actin_response.Rmd",
661
+ "sha256": "c0aeb849247008a2b71450487e47cee5e4485e60f89e5427b3af74ba570fc74e",
662
+ "language": "R",
663
+ "lines": 804,
664
+ "truncated": false,
665
+ "block": 4,
666
+ "row": 1133
667
+ },
668
+ {
669
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig04_Arp3KO/fig04f_cortical_section_tau_density.Rmd",
670
+ "sha256": "cc6f24ca5b3b53354a76be67f5033906b6657a3af2fcd125455409d29cd0f123",
671
+ "language": "R",
672
+ "lines": 135,
673
+ "truncated": false,
674
+ "block": 4,
675
+ "row": 551
676
+ },
677
+ {
678
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig04_Arp3KO/fig04fh_arp3_genotype_neurite_quantreg.R",
679
+ "sha256": "da18cdc5babebd0da0d07de4df5b69cdeafd7cfa3da6baa6a34b539e813af593",
680
+ "language": "R",
681
+ "lines": 176,
682
+ "truncated": false,
683
+ "block": 4,
684
+ "row": 771
685
+ },
686
+ {
687
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig04_Arp3KO/fig04m_actin_line_profile_ko.Rmd",
688
+ "sha256": "689cf639a5903f1e631c94d046cdf1ff77f237160bf694321ac6bc0504cf4735",
689
+ "language": "R",
690
+ "lines": 34,
691
+ "truncated": false,
692
+ "block": 4,
693
+ "row": 282
694
+ },
695
+ {
696
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig04_Arp3KO/fig04m_actin_line_profile_wt.Rmd",
697
+ "sha256": "767ef16e4f7b3ea31635f64a6776929871c68f14abc05e3f592a7b3340dbd998",
698
+ "language": "R",
699
+ "lines": 34,
700
+ "truncated": false,
701
+ "block": 4,
702
+ "row": 276
703
+ },
704
+ {
705
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig04_Arp3KO/fig04m_nmiib_actin_line_profile_ko.Rmd",
706
+ "sha256": "b6e0a1b61ff7b7825045bcbe259f9aeb309448b43f7dbebca995db93639366de",
707
+ "language": "R",
708
+ "lines": 33,
709
+ "truncated": false,
710
+ "block": 4,
711
+ "row": 271
712
+ },
713
+ {
714
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig04_Arp3KO/fig04m_nmiib_actin_line_profile_wt.Rmd",
715
+ "sha256": "63c51f11f0b4d90768f277a0d0309dac4e11b0a392968c7cce1540cd79188096",
716
+ "language": "R",
717
+ "lines": 34,
718
+ "truncated": false,
719
+ "block": 4,
720
+ "row": 279
721
+ },
722
+ {
723
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig04_Arp3KO/fig04o_lyn_live_neurite_xcorr_ko.Rmd",
724
+ "sha256": "073c190580342781b0cdd937d58d4b9d8f7d896f393b3ad706c3e87ad09e3185",
725
+ "language": "R",
726
+ "lines": 36,
727
+ "truncated": false,
728
+ "block": 4,
729
+ "row": 272
730
+ },
731
+ {
732
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig04_Arp3KO/fig04o_lyn_live_neurite_xcorr_wt.Rmd",
733
+ "sha256": "4043a53d0265677e95e894726dee191bfea4b68a047523814fe5dd299aec8c94",
734
+ "language": "R",
735
+ "lines": 37,
736
+ "truncated": false,
737
+ "block": 4,
738
+ "row": 283
739
+ },
740
+ {
741
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig04_Arp3KO/fig04p_brightfield_neurite_xcorr.Rmd",
742
+ "sha256": "ef994a98b2b8df05d3470d137a65ea6c01549305b7eca1ca3b2607edd3e57b84",
743
+ "language": "R",
744
+ "lines": 1024,
745
+ "truncated": false,
746
+ "block": 4,
747
+ "row": 1161
748
+ },
749
+ {
750
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig05_myosin/fig05b_taxol_nocodazole_neurite_quantreg.R",
751
+ "sha256": "e242ab0c498d031ae7472f24edb013c16a2dc379f2f3586e40f409e44961893e",
752
+ "language": "R",
753
+ "lines": 131,
754
+ "truncated": false,
755
+ "block": 4,
756
+ "row": 685
757
+ },
758
+ {
759
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig05_myosin/fig05bcd_morphology_taxol_noc_quant.Rmd",
760
+ "sha256": "d977fcedcfcd15394148d7d54f247512ad86314e48ee710c7da71362a16df79b",
761
+ "language": "R",
762
+ "lines": 228,
763
+ "truncated": false,
764
+ "block": 4,
765
+ "row": 753
766
+ },
767
+ {
768
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig05_myosin/fig05l_blebb_ko_neurite_xcorr.Rmd",
769
+ "sha256": "fc4e70f87472af2178a32aa60f3748b15b0577447927deac869182d1161a2ea9",
770
+ "language": "R",
771
+ "lines": 876,
772
+ "truncated": false,
773
+ "block": 4,
774
+ "row": 1148
775
+ },
776
+ {
777
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig05_myosin/fig05l_blebb_wt_neurite_xcorr.Rmd",
778
+ "sha256": "1cb19f9ce5effac3d8e8558a31e029efb3456541652cccebf4ff4ba9d061e88a",
779
+ "language": "R",
780
+ "lines": 884,
781
+ "truncated": false,
782
+ "block": 4,
783
+ "row": 1144
784
+ },
785
+ {
786
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig05_myosin/fig05l_dmso_ko_neurite_xcorr.Rmd",
787
+ "sha256": "d277bee323079f246de04584229054e678ed7814f986b278ac1b03cbaa9b1d7e",
788
+ "language": "R",
789
+ "lines": 950,
790
+ "truncated": false,
791
+ "block": 4,
792
+ "row": 1155
793
+ },
794
+ {
795
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig05_myosin/fig05l_dmso_wt_neurite_xcorr.Rmd",
796
+ "sha256": "c0a495ffcd81242a53076b6bb6ede73af27b5fc37ffceb61386471b88d242c52",
797
+ "language": "R",
798
+ "lines": 718,
799
+ "truncated": false,
800
+ "block": 4,
801
+ "row": 1103
802
+ },
803
+ {
804
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/figures/Fig05_myosin/fig05l_kymo_consolidate_master.Rmd",
805
+ "sha256": "4331511be4f77a89ee29a01523fa2ebf987e7ac9984059c81ceb3dae2eb381d0",
806
+ "language": "R",
807
+ "lines": 1189,
808
+ "truncated": false,
809
+ "block": 4,
810
+ "row": 1186
811
+ },
812
+ {
813
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/helpers/file_sorting.Rmd",
814
+ "sha256": "08fb0dff70cd9e0da0bfbc3946552a4158dc29621f0d4c5ce28da96558e97c9b",
815
+ "language": "R",
816
+ "lines": 101,
817
+ "truncated": false,
818
+ "block": 4,
819
+ "row": 496
820
+ },
821
+ {
822
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/helpers/file_sorting__r_scripts_24420cbb.R",
823
+ "sha256": "bac8394f8e8f9d9046d28877dd9f146846f56ae31a2c7f18abe6097738638e7f",
824
+ "language": "R",
825
+ "lines": 70,
826
+ "truncated": false,
827
+ "block": 4,
828
+ "row": 456
829
+ },
830
+ {
831
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/helpers/file_sorting__r_scripts_41d6a5fd.R",
832
+ "sha256": "894565f56a2b918fdad018c18aee02883083f47ec955f99f5c2f5f0a8369c523",
833
+ "language": "R",
834
+ "lines": 66,
835
+ "truncated": false,
836
+ "block": 4,
837
+ "row": 448
838
+ },
839
+ {
840
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/helpers/parac1_file_sorting.Rmd",
841
+ "sha256": "4db976c739a1a85e1e4e49fb7901c7962f74da7da4af73425b6a1560074700f3",
842
+ "language": "R",
843
+ "lines": 74,
844
+ "truncated": false,
845
+ "block": 4,
846
+ "row": 386
847
+ },
848
+ {
849
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/templates/edfig11df_eb3_length_under_ck666.Rmd",
850
+ "sha256": "24a6b2170fbb57d3aa11c71c26372c3218379b826c539743704e1a079ed4878f",
851
+ "language": "R",
852
+ "lines": 454,
853
+ "truncated": false,
854
+ "block": 4,
855
+ "row": 1069
856
+ },
857
+ {
858
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/templates/fig03n_parac1_precursor.Rmd",
859
+ "sha256": "99beada8d5701d9c3c65aaa3ba019be0441b44ca7bdad4a22d3abf8dfef531a4",
860
+ "language": "R",
861
+ "lines": 315,
862
+ "truncated": false,
863
+ "block": 4,
864
+ "row": 1030
865
+ },
866
+ {
867
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/templates/fig04m_line_profile_coloc.Rmd",
868
+ "sha256": "fd2388b7dd62268ab780545503364e78b1e19cc2a6a6e2444a3ba73a1c245b24",
869
+ "language": "R",
870
+ "lines": 477,
871
+ "truncated": false,
872
+ "block": 4,
873
+ "row": 1075
874
+ },
875
+ {
876
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/templates/fig04o_lyn_live_neurite_xcorr.Rmd",
877
+ "sha256": "664a2794d10462704cfd3d431e3be550d0e9a8038cbdc23ce7559de2052cb1cb",
878
+ "language": "R",
879
+ "lines": 875,
880
+ "truncated": false,
881
+ "block": 4,
882
+ "row": 1151
883
+ },
884
+ {
885
+ "path": "Custom_scripts_Arp3_neuronal_polarization_2026.zip/templates/pooled_replicate_ccf.Rmd",
886
+ "sha256": "e6e9a5fc0e7fed65faef8f363714413d3f5126128eb458653e9e931deab2fbdd",
887
+ "language": "R",
888
+ "lines": 1819,
889
+ "truncated": false,
890
+ "block": 4,
891
+ "row": 1225
892
+ },
893
+ {
894
+ "path": "IJ_NeuriteGrowthScript.zip/LICENSE",
895
+ "sha256": "230184f60bae2feaf244f10a8bac053c8ff33a183bcc365b4d8b876d2b7f4809",
896
+ "language": "License",
897
+ "lines": 674,
898
+ "truncated": false,
899
+ "block": 3,
900
+ "row": 8173
901
+ },
902
+ {
903
+ "path": "IJ_NeuriteGrowthScript.zip/NeuriteKymoAnalyzer.py",
904
+ "sha256": "1847b76775732a2b19325a841934cad32b81e9d84c1c2f9f350bfdeddcda798b",
905
+ "language": "Python",
906
+ "lines": 1049,
907
+ "truncated": false,
908
+ "block": 3,
909
+ "row": 27890
910
+ },
911
+ {
912
+ "path": "IJ_NeuriteGrowthScript.zip/NeuriteKymoGeneration.py",
913
+ "sha256": "bbc9d20652144a6c684feb59b1b55550e388213f21dae1bd2d3ad3c1c8e640be",
914
+ "language": "Python",
915
+ "lines": 461,
916
+ "truncated": false,
917
+ "block": 3,
918
+ "row": 26737
919
+ },
920
+ {
921
+ "path": "IJ_NeuriteGrowthScript.zip/README.md",
922
+ "sha256": "f98943a8f11b0d014147974b40b98a243efd775a3bb8625311c257bf1aa0d117",
923
+ "language": "Text",
924
+ "lines": 21,
925
+ "truncated": false,
926
+ "block": 4,
927
+ "row": 2326
928
+ }
929
+ ]
930
+ }
manifests/0b/github.com__dawnfinzi__spacestream.json ADDED
@@ -0,0 +1,660 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/dawnfinzi/spacestream",
4
+ "url": "https://github.com/dawnfinzi/spacestream",
5
+ "host": "github.com",
6
+ "commit": "d85997e327886f119441cc6a8355584373878d29",
7
+ "license": "Apache-2.0",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "c71d239df91726fc519c6eb72d318ec65820627232b2f796219e87dcf35d0ab4",
14
+ "language": "License",
15
+ "lines": 201,
16
+ "truncated": false,
17
+ "block": 1,
18
+ "row": 2216
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "aede3e345bfb8bfe6440169111f317cd80ae6c5dc23a3ea081926b19f40e7db2",
23
+ "language": "Text",
24
+ "lines": 45,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2528
28
+ },
29
+ {
30
+ "path": "matlab/F03_B.m",
31
+ "sha256": "aef9f6d9b6169d5d24d59badcfd07260aa1b157f3a531d268b6c04afc0bcce2b",
32
+ "language": "MATLAB",
33
+ "lines": 231,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 16065
37
+ },
38
+ {
39
+ "path": "matlab/F03_C.m",
40
+ "sha256": "830c03e671e29f25a9ec3170318d67c1e7e68a79981bd53ddd7e0f46ea44915d",
41
+ "language": "MATLAB",
42
+ "lines": 223,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 16026
46
+ },
47
+ {
48
+ "path": "matlab/F04_A.m",
49
+ "sha256": "8c20da63c91534e883a614d799c8be93ac11c46fe9f465950873e46ba2105661",
50
+ "language": "MATLAB",
51
+ "lines": 278,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 16434
55
+ },
56
+ {
57
+ "path": "matlab/F04_B.m",
58
+ "sha256": "fd0797cc6b0f76530cb49820fb00226dfe5781895471d54ae0e14c9eaed804b0",
59
+ "language": "MATLAB",
60
+ "lines": 275,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 16422
64
+ },
65
+ {
66
+ "path": "matlab/create_distance_matrix.m",
67
+ "sha256": "c8f45a5303a4453bb1278677110b350064f7304cc6fd07c136b331165b74ecb2",
68
+ "language": "MATLAB",
69
+ "lines": 78,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 13245
73
+ },
74
+ {
75
+ "path": "matlab/prepare_betas.m",
76
+ "sha256": "fe326b441e3a771b3fc41a5e4f87304e80b81c630dc87ee61662f6804e6fca0c",
77
+ "language": "MATLAB",
78
+ "lines": 131,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 15035
82
+ },
83
+ {
84
+ "path": "matlab/read_main_text_source_table.m",
85
+ "sha256": "e611fe7fb407e1801d1d51da39a19d0f3498956ad2aac47c5bf38d15501ed4f2",
86
+ "language": "MATLAB",
87
+ "lines": 12,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 8914
91
+ },
92
+ {
93
+ "path": "matlab/transform_selectivity_to_fsaverage.m",
94
+ "sha256": "f591b5baae74609109c47224efa3fd4c44e9625b3e2490802a069827b3227597",
95
+ "language": "MATLAB",
96
+ "lines": 25,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 10129
100
+ },
101
+ {
102
+ "path": "matlab/verify_distance_matrix.m",
103
+ "sha256": "a9714286225c5c53e9a39fb830b0693ff1c7cdcda83ab75304d8a705ffbc7f72",
104
+ "language": "MATLAB",
105
+ "lines": 44,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 11825
109
+ },
110
+ {
111
+ "path": "notebooks/F01_A.ipynb",
112
+ "sha256": "55833befe060e474efe07637b1200581499e6b4e479f75dd8e742b1e4bd7540a",
113
+ "language": "Jupyter",
114
+ "lines": 152,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 7307
118
+ },
119
+ {
120
+ "path": "notebooks/F01_B.ipynb",
121
+ "sha256": "85a0d276844d949cfb616d13f8f8dbbbbb7edbe3aee54d99a1ecb6dc15cf9cab",
122
+ "language": "Jupyter",
123
+ "lines": 254,
124
+ "truncated": false,
125
+ "block": 3,
126
+ "row": 7474
127
+ },
128
+ {
129
+ "path": "notebooks/F03_B_processing.ipynb",
130
+ "sha256": "e5140623c8209bab97fd1de650d629a15c61cb1d2fc6c3b27c18c03edb1b03f1",
131
+ "language": "Jupyter",
132
+ "lines": 219,
133
+ "truncated": false,
134
+ "block": 3,
135
+ "row": 7454
136
+ },
137
+ {
138
+ "path": "notebooks/F03_C_processing.ipynb",
139
+ "sha256": "9e156799eccc8d301e71d4ccb91590292f16e3c96d2ac19268d23bf89deff133",
140
+ "language": "Jupyter",
141
+ "lines": 320,
142
+ "truncated": false,
143
+ "block": 3,
144
+ "row": 7606
145
+ },
146
+ {
147
+ "path": "notebooks/F04_A_processing.ipynb",
148
+ "sha256": "04c7f6b68154bf666b75d74119f82e2c7956804d242b3c3da1b337c55f8e0025",
149
+ "language": "Jupyter",
150
+ "lines": 194,
151
+ "truncated": false,
152
+ "block": 3,
153
+ "row": 7358
154
+ },
155
+ {
156
+ "path": "notebooks/F04_B_processing.ipynb",
157
+ "sha256": "55e8946e7eddc0ca8b71548e2dbf56de5e6f3e6ac9a2ce72e8b5084ccbbfb98b",
158
+ "language": "Jupyter",
159
+ "lines": 173,
160
+ "truncated": false,
161
+ "block": 3,
162
+ "row": 7355
163
+ },
164
+ {
165
+ "path": "notebooks/F05_B.ipynb",
166
+ "sha256": "e3316f9c40ffcf3e8f93de3576fa0d59cc548ec4d2d538ff80bd0aabba70ab39",
167
+ "language": "Jupyter",
168
+ "lines": 408,
169
+ "truncated": false,
170
+ "block": 3,
171
+ "row": 7635
172
+ },
173
+ {
174
+ "path": "notebooks/F05_C.ipynb",
175
+ "sha256": "150b5469d6273d6597f6da25f7ea3c67d21a73602a38521c64c0d6049bcfcd3b",
176
+ "language": "Jupyter",
177
+ "lines": 302,
178
+ "truncated": false,
179
+ "block": 3,
180
+ "row": 7531
181
+ },
182
+ {
183
+ "path": "notebooks/F06_A_B.ipynb",
184
+ "sha256": "2379ae89d146a83c8204092806ef9ad46b382b7abc3bf7c3c30cee1679a21e36",
185
+ "language": "Jupyter",
186
+ "lines": 307,
187
+ "truncated": false,
188
+ "block": 3,
189
+ "row": 7483
190
+ },
191
+ {
192
+ "path": "notebooks/F06_C.ipynb",
193
+ "sha256": "f8f1a1796d10f4db1e69c6652b77a1cdcf9a9216cd3c2399a6fe5d7511c422a8",
194
+ "language": "Jupyter",
195
+ "lines": 354,
196
+ "truncated": false,
197
+ "block": 3,
198
+ "row": 7594
199
+ },
200
+ {
201
+ "path": "notebooks/F06_D.ipynb",
202
+ "sha256": "228b0394cc87061eff0b83a951e3bce5a190b54d7663a4753013f7e083a3d617",
203
+ "language": "Jupyter",
204
+ "lines": 191,
205
+ "truncated": false,
206
+ "block": 3,
207
+ "row": 7321
208
+ },
209
+ {
210
+ "path": "notebooks/demo_plot_combined_source_data.ipynb",
211
+ "sha256": "61ce0b58e887445237d296ce32f87ea99ce0f4df0f0410ed731e8574ee3a9d9e",
212
+ "language": "Jupyter",
213
+ "lines": 991,
214
+ "truncated": false,
215
+ "block": 3,
216
+ "row": 7845
217
+ },
218
+ {
219
+ "path": "scripts/TDANN_optimal_thirds.py",
220
+ "sha256": "665024500778fd53e3b3ae7718c8892d55044db03b477900cdc5a0edfb4d3de9",
221
+ "language": "Python",
222
+ "lines": 157,
223
+ "truncated": false,
224
+ "block": 3,
225
+ "row": 23548
226
+ },
227
+ {
228
+ "path": "scripts/calc_effective_dimensionality.py",
229
+ "sha256": "8ed329e717bc0927cdcf94bd551a3660695f46856793496161021d145598051f",
230
+ "language": "Python",
231
+ "lines": 146,
232
+ "truncated": false,
233
+ "block": 3,
234
+ "row": 22978
235
+ },
236
+ {
237
+ "path": "scripts/calc_smoothness.py",
238
+ "sha256": "a0f7c5e7a25d1140caf9bd280156eb9ab820674733f828567183f2dcdf3f1dcb",
239
+ "language": "Python",
240
+ "lines": 304,
241
+ "truncated": false,
242
+ "block": 3,
243
+ "row": 25525
244
+ },
245
+ {
246
+ "path": "scripts/cka_mb18_overlap.py",
247
+ "sha256": "56bfebb8c4e533df28ffaf369610b690becdb0448ddbde9913d164a39ee9c679",
248
+ "language": "Python",
249
+ "lines": 224,
250
+ "truncated": false,
251
+ "block": 3,
252
+ "row": 23991
253
+ },
254
+ {
255
+ "path": "scripts/cka_tdann_spatial_weight.py",
256
+ "sha256": "d8ce150d6af1dd8cec5e1be570f4461cee287b2325a39d925926f716bd551af3",
257
+ "language": "Python",
258
+ "lines": 309,
259
+ "truncated": false,
260
+ "block": 3,
261
+ "row": 25555
262
+ },
263
+ {
264
+ "path": "scripts/eval_robustness.py",
265
+ "sha256": "3e4e9c94209ae5e4641c2d488c4e2b9d58792a4e7daf97a9a287c62b68b7e674",
266
+ "language": "Python",
267
+ "lines": 258,
268
+ "truncated": false,
269
+ "block": 3,
270
+ "row": 24513
271
+ },
272
+ {
273
+ "path": "scripts/fitting_one_to_one_unit2voxel.py",
274
+ "sha256": "3c81da121424e4effb0c9c1df9d55d2d4dda87f33c3b744627b12b5bf348f906",
275
+ "language": "Python",
276
+ "lines": 705,
277
+ "truncated": false,
278
+ "block": 3,
279
+ "row": 27291
280
+ },
281
+ {
282
+ "path": "scripts/fitting_one_to_one_voxel2voxel.py",
283
+ "sha256": "207d680581d174f13e1cce02b18cf7001394292d7ec30562fdddaa799bbb95fb",
284
+ "language": "Python",
285
+ "lines": 347,
286
+ "truncated": false,
287
+ "block": 3,
288
+ "row": 25777
289
+ },
290
+ {
291
+ "path": "scripts/fitting_regression_brain2brain_by_area.py",
292
+ "sha256": "f512b38dc7e7300ae83022808aab5e9673eda36ddcb9d09fd8709d5b105ca0f0",
293
+ "language": "Python",
294
+ "lines": 246,
295
+ "truncated": false,
296
+ "block": 3,
297
+ "row": 24476
298
+ },
299
+ {
300
+ "path": "scripts/fitting_regression_model2brain_by_layer.py",
301
+ "sha256": "9626db07d73b35661846e1d8d7eae1deec7ffaeae3374ae8417ca06c42afddfe",
302
+ "language": "Python",
303
+ "lines": 221,
304
+ "truncated": false,
305
+ "block": 3,
306
+ "row": 23702
307
+ },
308
+ {
309
+ "path": "scripts/functional_swap.py",
310
+ "sha256": "d6e56b0ebae499b29e99bd42c23dfb30ae38810b106ea0061d0f8f4353921d9a",
311
+ "language": "Python",
312
+ "lines": 368,
313
+ "truncated": false,
314
+ "block": 3,
315
+ "row": 25658
316
+ },
317
+ {
318
+ "path": "scripts/linear_eval.py",
319
+ "sha256": "06c8446e69bb2986644e23d946c952730a1357e8bdcb9f79975c95945e017bfc",
320
+ "language": "Python",
321
+ "lines": 381,
322
+ "truncated": false,
323
+ "block": 3,
324
+ "row": 25944
325
+ },
326
+ {
327
+ "path": "scripts/test_overall_transfer.py",
328
+ "sha256": "d86b7aeecaca2ae9a79871ecfa33af7a04251eb3e8c2a3168533905e6c2677da",
329
+ "language": "Python",
330
+ "lines": 127,
331
+ "truncated": false,
332
+ "block": 3,
333
+ "row": 21622
334
+ },
335
+ {
336
+ "path": "scripts/test_transfer_by_stream.py",
337
+ "sha256": "de84694832b0662c0d4e02e4fa92c41f8a20351c2b3dcee926f0f593644ee727",
338
+ "language": "Python",
339
+ "lines": 135,
340
+ "truncated": false,
341
+ "block": 3,
342
+ "row": 21844
343
+ },
344
+ {
345
+ "path": "setup.py",
346
+ "sha256": "73cd5672064472496da808014c5c54849de5db37ae9c3b330e2b766894b2f008",
347
+ "language": "Python",
348
+ "lines": 36,
349
+ "truncated": false,
350
+ "block": 3,
351
+ "row": 18914
352
+ },
353
+ {
354
+ "path": "spacestream/analyses/base_fitter.py",
355
+ "sha256": "c6b7f892b5059be15df126c68cbac37aea21226ff3db047e8d66a0b01ee454d5",
356
+ "language": "Python",
357
+ "lines": 249,
358
+ "truncated": false,
359
+ "block": 3,
360
+ "row": 24733
361
+ },
362
+ {
363
+ "path": "spacestream/analyses/effective_dimensionality.py",
364
+ "sha256": "b8c5e5055bb3db56156be0202be1bba32dc71498dc1cc2e5c8624fdc2b40be34",
365
+ "language": "Python",
366
+ "lines": 15,
367
+ "truncated": false,
368
+ "block": 3,
369
+ "row": 18193
370
+ },
371
+ {
372
+ "path": "spacestream/analyses/hvm_fitter.py",
373
+ "sha256": "56f247aa302173d0d5e071ac49ce65cd711bdd3118af98fa79c432e130f848cf",
374
+ "language": "Python",
375
+ "lines": 271,
376
+ "truncated": false,
377
+ "block": 3,
378
+ "row": 25567
379
+ },
380
+ {
381
+ "path": "spacestream/analyses/smoothness.py",
382
+ "sha256": "3ac0952292d835ebd356011143ab4916c5160af13e182eefeb327361ff28df1b",
383
+ "language": "Python",
384
+ "lines": 74,
385
+ "truncated": false,
386
+ "block": 3,
387
+ "row": 21125
388
+ },
389
+ {
390
+ "path": "spacestream/core/constants.py",
391
+ "sha256": "51985b3ba4f438a9afb431dc0b43c678695c18df4872f74dff19202ec5253fbb",
392
+ "language": "Python",
393
+ "lines": 167,
394
+ "truncated": false,
395
+ "block": 3,
396
+ "row": 22725
397
+ },
398
+ {
399
+ "path": "spacestream/core/feature_extractor.py",
400
+ "sha256": "62c3eb076efabfa1f5b14959a435f9bf2f39d344c29c2119d8e8db5b382b5d91",
401
+ "language": "Python",
402
+ "lines": 232,
403
+ "truncated": false,
404
+ "block": 3,
405
+ "row": 24607
406
+ },
407
+ {
408
+ "path": "spacestream/core/feature_saver.py",
409
+ "sha256": "4e1dfbf092aaf57a3f5205aaf82f1fe5967a0f85fda9683daccd6155a8c8af9a",
410
+ "language": "Python",
411
+ "lines": 76,
412
+ "truncated": false,
413
+ "block": 3,
414
+ "row": 20149
415
+ },
416
+ {
417
+ "path": "spacestream/core/fit.py",
418
+ "sha256": "0c020524284e26cb15ee7ea485649cbfc8ff4b1dca2908c30854a064028b6f33",
419
+ "language": "Python",
420
+ "lines": 175,
421
+ "truncated": false,
422
+ "block": 3,
423
+ "row": 23420
424
+ },
425
+ {
426
+ "path": "spacestream/core/losses.py",
427
+ "sha256": "e51941730c62444e97379319150b093c9b7f4945444de66a4dec09a7571713d2",
428
+ "language": "Python",
429
+ "lines": 122,
430
+ "truncated": false,
431
+ "block": 3,
432
+ "row": 21976
433
+ },
434
+ {
435
+ "path": "spacestream/core/paths.py",
436
+ "sha256": "35acb495239bd9cd12404c97ee9e6b279661e21485d71c3fb9bbf38260c48189",
437
+ "language": "Python",
438
+ "lines": 21,
439
+ "truncated": false,
440
+ "block": 3,
441
+ "row": 18896
442
+ },
443
+ {
444
+ "path": "spacestream/core/positions.py",
445
+ "sha256": "8aec12562d29ce9324ea45f539137e7e4c05d408484c1d0c7e752939272864ad",
446
+ "language": "Python",
447
+ "lines": 159,
448
+ "truncated": false,
449
+ "block": 3,
450
+ "row": 23244
451
+ },
452
+ {
453
+ "path": "spacestream/core/swapopt.py",
454
+ "sha256": "93f05a77f7bdb7899450231a2031c13dbcc416d53ad1b0a5a220701f563539ba",
455
+ "language": "Python",
456
+ "lines": 320,
457
+ "truncated": false,
458
+ "block": 3,
459
+ "row": 25532
460
+ },
461
+ {
462
+ "path": "spacestream/datasets/hvm.py",
463
+ "sha256": "8d06dcbb0a98b98948a987746cbadccb866e2852e90eb78adc1f80785c819f7a",
464
+ "language": "Python",
465
+ "lines": 115,
466
+ "truncated": false,
467
+ "block": 3,
468
+ "row": 21626
469
+ },
470
+ {
471
+ "path": "spacestream/datasets/imagenet.py",
472
+ "sha256": "4d91c3c40510ca890f4945954b25e9de7c4fc0fe751e0873c6880441c3dae4b9",
473
+ "language": "Python",
474
+ "lines": 162,
475
+ "truncated": false,
476
+ "block": 3,
477
+ "row": 22996
478
+ },
479
+ {
480
+ "path": "spacestream/datasets/nsd.py",
481
+ "sha256": "6346da1ff33c41a64956ae290cab1f68f995efe34448065467d9f296f249cf94",
482
+ "language": "Python",
483
+ "lines": 210,
484
+ "truncated": false,
485
+ "block": 3,
486
+ "row": 24153
487
+ },
488
+ {
489
+ "path": "spacestream/datasets/sine_gratings.py",
490
+ "sha256": "6bfe3bdd47198f755340f054c20d2c1039d4568246882b7ee39dfa1b9ea92c45",
491
+ "language": "Python",
492
+ "lines": 365,
493
+ "truncated": false,
494
+ "block": 3,
495
+ "row": 25939
496
+ },
497
+ {
498
+ "path": "spacestream/models/__init__.py",
499
+ "sha256": "96a9f93d860a13f84f171a8d8ce8bd903d6b550cfc2cae379d4a17e692a8b8bf",
500
+ "language": "Python",
501
+ "lines": 4,
502
+ "truncated": false,
503
+ "block": 3,
504
+ "row": 17546
505
+ },
506
+ {
507
+ "path": "spacestream/models/fast_resnet3d.py",
508
+ "sha256": "0b03c299122823d95b59ce9d925bde5b03da617e790a9337437a443ffa620fd4",
509
+ "language": "Python",
510
+ "lines": 107,
511
+ "truncated": false,
512
+ "block": 3,
513
+ "row": 21123
514
+ },
515
+ {
516
+ "path": "spacestream/models/resnet.py",
517
+ "sha256": "2443998d68a6db696b7e37e6c85f9c9f46a0e79d5db305a79899249242c69a16",
518
+ "language": "Python",
519
+ "lines": 340,
520
+ "truncated": false,
521
+ "block": 3,
522
+ "row": 25492
523
+ },
524
+ {
525
+ "path": "spacestream/models/resnet3d.py",
526
+ "sha256": "2610246275d89a53c894ae2bb8ea4cb40712df82f51c8a746bbead12cb2cce7d",
527
+ "language": "Python",
528
+ "lines": 228,
529
+ "truncated": false,
530
+ "block": 3,
531
+ "row": 23927
532
+ },
533
+ {
534
+ "path": "spacestream/models/slow_fast.py",
535
+ "sha256": "552202af17b4af36d30dfd6a0216a503d88a83def7f27f6c0599698714e82711",
536
+ "language": "Python",
537
+ "lines": 116,
538
+ "truncated": false,
539
+ "block": 3,
540
+ "row": 21582
541
+ },
542
+ {
543
+ "path": "spacestream/models/slow_resnet3d.py",
544
+ "sha256": "c053675d616faeba7c0839601f3551744b2b66b0e059fd981c2fede576a86624",
545
+ "language": "Python",
546
+ "lines": 56,
547
+ "truncated": false,
548
+ "block": 3,
549
+ "row": 19366
550
+ },
551
+ {
552
+ "path": "spacestream/models/spatial_resnet.py",
553
+ "sha256": "7cafc8b24cfeaa1ef8bf9df1582a0a9ca8dc723688e2fac98c5c7157f36dc95e",
554
+ "language": "Python",
555
+ "lines": 64,
556
+ "truncated": false,
557
+ "block": 3,
558
+ "row": 20599
559
+ },
560
+ {
561
+ "path": "spacestream/utils/array_utils.py",
562
+ "sha256": "b41b27f51e02c8ccd70006c60b225de7a0e17a5b6651936f9de46c435756e617",
563
+ "language": "Python",
564
+ "lines": 106,
565
+ "truncated": false,
566
+ "block": 3,
567
+ "row": 21226
568
+ },
569
+ {
570
+ "path": "spacestream/utils/dataloader_utils.py",
571
+ "sha256": "f2d31568730120335a4393b9d94d402f48de5b5ee665c9cc24e15951ea1bad79",
572
+ "language": "Python",
573
+ "lines": 20,
574
+ "truncated": false,
575
+ "block": 3,
576
+ "row": 18389
577
+ },
578
+ {
579
+ "path": "spacestream/utils/general_utils.py",
580
+ "sha256": "f28ac4c7329ba472aecd8044ed4cfbfb4c20a192ce595a364aa8ba6d8983f139",
581
+ "language": "Python",
582
+ "lines": 95,
583
+ "truncated": false,
584
+ "block": 3,
585
+ "row": 20876
586
+ },
587
+ {
588
+ "path": "spacestream/utils/get_utils.py",
589
+ "sha256": "1c2be13ee4b66d8c340c76ec9e7de82b591c9456d15e6c72fa245d682bf1de5f",
590
+ "language": "Python",
591
+ "lines": 436,
592
+ "truncated": false,
593
+ "block": 3,
594
+ "row": 26681
595
+ },
596
+ {
597
+ "path": "spacestream/utils/mapping_utils.py",
598
+ "sha256": "05361d4fd4571bdbc387f9fd4c1fa3ec7486dfee368b2e272c424fdb84578d6b",
599
+ "language": "Python",
600
+ "lines": 328,
601
+ "truncated": false,
602
+ "block": 3,
603
+ "row": 25958
604
+ },
605
+ {
606
+ "path": "spacestream/utils/memory_utils.py",
607
+ "sha256": "bb08a8d95550f18d6ee0251d390cb5ed1dbd90c9e3bf5f46f9ac3a56789ca96d",
608
+ "language": "Python",
609
+ "lines": 60,
610
+ "truncated": false,
611
+ "block": 3,
612
+ "row": 20098
613
+ },
614
+ {
615
+ "path": "spacestream/utils/metric_utils.py",
616
+ "sha256": "817696908c5913317309a61097f3bb9570e8d9edf66e86488afc53221e979e21",
617
+ "language": "Python",
618
+ "lines": 140,
619
+ "truncated": false,
620
+ "block": 3,
621
+ "row": 22770
622
+ },
623
+ {
624
+ "path": "spacestream/utils/plot_utils.py",
625
+ "sha256": "81991e31dfb94fd8865960589c36cd1104f4eb63c0a44e539fd7f2d1c1a918a6",
626
+ "language": "Python",
627
+ "lines": 65,
628
+ "truncated": false,
629
+ "block": 3,
630
+ "row": 20189
631
+ },
632
+ {
633
+ "path": "spacestream/utils/regression_utils.py",
634
+ "sha256": "2dc9eb5b591d88a84e748a76457d64d1f83f37e3e19ff310625b45d322533250",
635
+ "language": "Python",
636
+ "lines": 203,
637
+ "truncated": false,
638
+ "block": 3,
639
+ "row": 24004
640
+ },
641
+ {
642
+ "path": "spacestream/utils/slowfast_utils.py",
643
+ "sha256": "9c489c67ff733b1a9f09c7a2ec484fb17151e243810f34df0e8c09cacc51e11f",
644
+ "language": "Python",
645
+ "lines": 74,
646
+ "truncated": false,
647
+ "block": 3,
648
+ "row": 20506
649
+ },
650
+ {
651
+ "path": "spacestream/utils/swapopt_utils.py",
652
+ "sha256": "1c64117678841fd9a7181906480bd0cecf9018b713a044a39a1e84d32d4f296d",
653
+ "language": "Python",
654
+ "lines": 142,
655
+ "truncated": false,
656
+ "block": 3,
657
+ "row": 22756
658
+ }
659
+ ]
660
+ }
manifests/0b/github.com__piercelab__tcrmodel2.json ADDED
@@ -0,0 +1,867 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/piercelab/tcrmodel2",
4
+ "url": "https://github.com/piercelab/tcrmodel2",
5
+ "host": "github.com",
6
+ "commit": "90536deaf766fe169f51679ce9456f3b165be5c9",
7
+ "license": "Apache-2.0",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "c71d239df91726fc519c6eb72d318ec65820627232b2f796219e87dcf35d0ab4",
14
+ "language": "License",
15
+ "lines": 201,
16
+ "truncated": false,
17
+ "block": 1,
18
+ "row": 2216
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "4e6ebca086fe79aee992ff53151d4a605d53e874e844a9038bc983f175c6d1c7",
23
+ "language": "Text",
24
+ "lines": 195,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2679
28
+ },
29
+ {
30
+ "path": "alphafold/__init__.py",
31
+ "sha256": "81d285f77e444308aaf387bf06ecbbf7ccca4461d62db3e9ad9fe462393e5d82",
32
+ "language": "Python",
33
+ "lines": 14,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 18569
37
+ },
38
+ {
39
+ "path": "alphafold/common/__init__.py",
40
+ "sha256": "144c001f817a11c018cb618354e7fb67e52cd76d01b74667b02fc0657a5874e7",
41
+ "language": "Python",
42
+ "lines": 14,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 18556
46
+ },
47
+ {
48
+ "path": "alphafold/common/confidence.py",
49
+ "sha256": "f2bbcae52103e5e4b0534f152696c1ab236b2564636d16b6822f3dffb439db1b",
50
+ "language": "Python",
51
+ "lines": 168,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 23601
55
+ },
56
+ {
57
+ "path": "alphafold/common/protein.py",
58
+ "sha256": "7c54f8a337ebb0a5a3765f77179b7d86c71ec89d9153272320cd9384b1c66916",
59
+ "language": "Python",
60
+ "lines": 278,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 25326
64
+ },
65
+ {
66
+ "path": "alphafold/common/protein_test.py",
67
+ "sha256": "bdee53a00b176562e69ce5ede58f4c4f7ac9804177a1ecf86af26a3b0903dc77",
68
+ "language": "Python",
69
+ "lines": 114,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 22651
73
+ },
74
+ {
75
+ "path": "alphafold/common/residue_constants.py",
76
+ "sha256": "918cb2720fe681dcc432b072117e79d38f3a486c131133a2053d295f9ebcab91",
77
+ "language": "Python",
78
+ "lines": 897,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 27737
82
+ },
83
+ {
84
+ "path": "alphafold/common/residue_constants_test.py",
85
+ "sha256": "4bbf7bb02ee3d8b4555fea852a6867d26c9d825dbe26e90ce12bcdf3388a6fca",
86
+ "language": "Python",
87
+ "lines": 190,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 25063
91
+ },
92
+ {
93
+ "path": "alphafold/data/__init__.py",
94
+ "sha256": "9fbad6d49a22e5687eba7f57058bbbbe75f6248997ca51f83cceb6071db65b1d",
95
+ "language": "Python",
96
+ "lines": 14,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 18535
100
+ },
101
+ {
102
+ "path": "alphafold/data/custom_templates.py",
103
+ "sha256": "4a8b4f464d4bb0f21cb3f69d20ef99e5fa84accf401d68222c176d2b57ceb05f",
104
+ "language": "Python",
105
+ "lines": 228,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 25115
109
+ },
110
+ {
111
+ "path": "alphafold/data/feature_processing.py",
112
+ "sha256": "9969c151ecfcfa4eb814b46e5f63a91870fef2a283d59b7bd25ad3fb4173e62a",
113
+ "language": "Python",
114
+ "lines": 228,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 24799
118
+ },
119
+ {
120
+ "path": "alphafold/data/mmcif_parsing.py",
121
+ "sha256": "82c945e75d731c8fce6d1063d88e643056f0c50979cf497f9ef45acef73e5198",
122
+ "language": "Python",
123
+ "lines": 386,
124
+ "truncated": false,
125
+ "block": 3,
126
+ "row": 26319
127
+ },
128
+ {
129
+ "path": "alphafold/data/msa_identifiers.py",
130
+ "sha256": "764d0267cbf37ca6b5f6c9f257c4f96c592df51636c0aef5d64478780daee7d8",
131
+ "language": "Python",
132
+ "lines": 90,
133
+ "truncated": false,
134
+ "block": 3,
135
+ "row": 21215
136
+ },
137
+ {
138
+ "path": "alphafold/data/msa_pairing.py",
139
+ "sha256": "4aa570a7d2153d1cf7530872d63089b65d49a1a4b5d18017ae48424dddc6f72c",
140
+ "language": "Python",
141
+ "lines": 461,
142
+ "truncated": false,
143
+ "block": 3,
144
+ "row": 26745
145
+ },
146
+ {
147
+ "path": "alphafold/data/parsers.py",
148
+ "sha256": "8ff1130f6ee83bb5965591fe56b0024765ea6ed6b00265cef3f76aeb2e43f781",
149
+ "language": "Python",
150
+ "lines": 637,
151
+ "truncated": false,
152
+ "block": 3,
153
+ "row": 27215
154
+ },
155
+ {
156
+ "path": "alphafold/data/pipeline.py",
157
+ "sha256": "885c6e97f2dc6943bff9b79e612d099505b314d7a6550a1896f4d85781adf948",
158
+ "language": "Python",
159
+ "lines": 271,
160
+ "truncated": false,
161
+ "block": 3,
162
+ "row": 25820
163
+ },
164
+ {
165
+ "path": "alphafold/data/pipeline_custom_templates.py",
166
+ "sha256": "3116d57c22bae9528a598a1fdfd20f4f93fdeb2abd4d2f067fccde6c821102df",
167
+ "language": "Python",
168
+ "lines": 443,
169
+ "truncated": false,
170
+ "block": 3,
171
+ "row": 26999
172
+ },
173
+ {
174
+ "path": "alphafold/data/pipeline_multimer.py",
175
+ "sha256": "7ba05cc2d7a966d5102ad66fe1efd61dff0a3bd52dcb9a9e1cb073f14157d816",
176
+ "language": "Python",
177
+ "lines": 296,
178
+ "truncated": false,
179
+ "block": 3,
180
+ "row": 25812
181
+ },
182
+ {
183
+ "path": "alphafold/data/pipeline_multimer_custom_templates.py",
184
+ "sha256": "a5ee6a47f8ec9cefc158f46ad0898fe19673e7277f318e48bfe29a1de42dd6a7",
185
+ "language": "Python",
186
+ "lines": 378,
187
+ "truncated": false,
188
+ "block": 3,
189
+ "row": 26492
190
+ },
191
+ {
192
+ "path": "alphafold/data/templates.py",
193
+ "sha256": "43569ae1868bb45f083c20d87cd443b1d0e865ea61f2c8677050a75996f61842",
194
+ "language": "Python",
195
+ "lines": 1010,
196
+ "truncated": false,
197
+ "block": 3,
198
+ "row": 27845
199
+ },
200
+ {
201
+ "path": "alphafold/data/tools/__init__.py",
202
+ "sha256": "99b6dc388add0ed76fba35e40cf36a64f17e88f5b830dd7eaee48853c92f4c31",
203
+ "language": "Python",
204
+ "lines": 14,
205
+ "truncated": false,
206
+ "block": 3,
207
+ "row": 18544
208
+ },
209
+ {
210
+ "path": "alphafold/data/tools/hhblits.py",
211
+ "sha256": "d1d4caed52fe9fe061d015ef3c2b29521b716894b07e28dac3c7d27e6d42c7fe",
212
+ "language": "Python",
213
+ "lines": 155,
214
+ "truncated": false,
215
+ "block": 3,
216
+ "row": 23293
217
+ },
218
+ {
219
+ "path": "alphafold/data/tools/hhsearch.py",
220
+ "sha256": "716235ef6382b1647355bebfdce125e3574262b42fd2ac5a0f3c71b0c211ab3e",
221
+ "language": "Python",
222
+ "lines": 107,
223
+ "truncated": false,
224
+ "block": 3,
225
+ "row": 21814
226
+ },
227
+ {
228
+ "path": "alphafold/data/tools/hmmbuild.py",
229
+ "sha256": "2e72d4e5e41eb58aee141f4e007b33b1ed5c4c1ad2c7cda1e9d175ca1a56efc3",
230
+ "language": "Python",
231
+ "lines": 138,
232
+ "truncated": false,
233
+ "block": 3,
234
+ "row": 22635
235
+ },
236
+ {
237
+ "path": "alphafold/data/tools/hmmsearch.py",
238
+ "sha256": "5f5504b40b95a87f059346d1da0131980e1abd5e576338fb673f400b6d8151c5",
239
+ "language": "Python",
240
+ "lines": 131,
241
+ "truncated": false,
242
+ "block": 3,
243
+ "row": 22624
244
+ },
245
+ {
246
+ "path": "alphafold/data/tools/jackhmmer.py",
247
+ "sha256": "5d5fcffa2cf28fc42bf50dff556c2d540858b1a8c811ecd980e38dce9c759f8c",
248
+ "language": "Python",
249
+ "lines": 221,
250
+ "truncated": false,
251
+ "block": 3,
252
+ "row": 24718
253
+ },
254
+ {
255
+ "path": "alphafold/data/tools/kalign.py",
256
+ "sha256": "62b03ea317bfe63f33812a3cfed44f9cc3271a233022e6549055437fa8f9caa9",
257
+ "language": "Python",
258
+ "lines": 104,
259
+ "truncated": false,
260
+ "block": 3,
261
+ "row": 21639
262
+ },
263
+ {
264
+ "path": "alphafold/data/tools/utils.py",
265
+ "sha256": "e64ec392a2be1c706afee0eee41cfbe39c2b7fa1dad864c364fbe3be3689cfdc",
266
+ "language": "Python",
267
+ "lines": 40,
268
+ "truncated": false,
269
+ "block": 3,
270
+ "row": 19245
271
+ },
272
+ {
273
+ "path": "alphafold/model/__init__.py",
274
+ "sha256": "a237ba59c7c0a012e927739e8b3e984b283f696af466dddab2d920c3aac087be",
275
+ "language": "Python",
276
+ "lines": 14,
277
+ "truncated": false,
278
+ "block": 3,
279
+ "row": 18510
280
+ },
281
+ {
282
+ "path": "alphafold/model/all_atom.py",
283
+ "sha256": "ec1a2df861a872e6319c714c92cd82d1e7954054062699176ce2f0416d8d03c9",
284
+ "language": "Python",
285
+ "lines": 1141,
286
+ "truncated": false,
287
+ "block": 3,
288
+ "row": 27930
289
+ },
290
+ {
291
+ "path": "alphafold/model/all_atom_multimer.py",
292
+ "sha256": "657e22c3ee914e0e573c390d8d6ffbf14a763968e739b1756047841ca58e6ec4",
293
+ "language": "Python",
294
+ "lines": 968,
295
+ "truncated": false,
296
+ "block": 3,
297
+ "row": 27832
298
+ },
299
+ {
300
+ "path": "alphafold/model/all_atom_test.py",
301
+ "sha256": "972917f797fc47d4b8dbf6e921b951e18aa05e0685c327ec6f31b802065c3880",
302
+ "language": "Python",
303
+ "lines": 135,
304
+ "truncated": false,
305
+ "block": 3,
306
+ "row": 22718
307
+ },
308
+ {
309
+ "path": "alphafold/model/common_modules.py",
310
+ "sha256": "bd4ed661d9dcd67b3f0bbbc96c641142daa793364dac08e9bb320d3c86c87eec",
311
+ "language": "Python",
312
+ "lines": 191,
313
+ "truncated": false,
314
+ "block": 3,
315
+ "row": 23549
316
+ },
317
+ {
318
+ "path": "alphafold/model/config.py",
319
+ "sha256": "7b53395e6e936f8f62f5ffa9e88fcb089f9ef96c156835cfbb49b5d2f94f1534",
320
+ "language": "Python",
321
+ "lines": 699,
322
+ "truncated": false,
323
+ "block": 3,
324
+ "row": 27455
325
+ },
326
+ {
327
+ "path": "alphafold/model/data.py",
328
+ "sha256": "893b1f013be9f1dbcaf84d0ea9e73268d6a0356b6f8523f818761632630c2673",
329
+ "language": "Python",
330
+ "lines": 33,
331
+ "truncated": false,
332
+ "block": 3,
333
+ "row": 19102
334
+ },
335
+ {
336
+ "path": "alphafold/model/features.py",
337
+ "sha256": "5e37237d357c38d42e5ea273a966ee39d8d58cf4f28424c6fd62eed76ffe8def",
338
+ "language": "Python",
339
+ "lines": 104,
340
+ "truncated": false,
341
+ "block": 3,
342
+ "row": 21896
343
+ },
344
+ {
345
+ "path": "alphafold/model/folding.py",
346
+ "sha256": "71bafd2f98676b9f231a73d0d4b42d7e93969d1d25611d7a69fb742832318ff7",
347
+ "language": "Python",
348
+ "lines": 1009,
349
+ "truncated": false,
350
+ "block": 3,
351
+ "row": 27778
352
+ },
353
+ {
354
+ "path": "alphafold/model/folding_multimer.py",
355
+ "sha256": "12b59ff5ab31cd95b0e817bc8701339f2f13da647a51595d43f2dd956248d5b3",
356
+ "language": "Python",
357
+ "lines": 1162,
358
+ "truncated": false,
359
+ "block": 3,
360
+ "row": 27881
361
+ },
362
+ {
363
+ "path": "alphafold/model/geometry/__init__.py",
364
+ "sha256": "7958376e4a4c32c8a973ce2fa94d68fbe93e4e6e0d626d78bccfc0242a75de41",
365
+ "language": "Python",
366
+ "lines": 31,
367
+ "truncated": false,
368
+ "block": 3,
369
+ "row": 19181
370
+ },
371
+ {
372
+ "path": "alphafold/model/geometry/rigid_matrix_vector.py",
373
+ "sha256": "e485a90e6af521938c9f7aa307dd78bafaadff78249b654c21299ba297a67fc0",
374
+ "language": "Python",
375
+ "lines": 106,
376
+ "truncated": false,
377
+ "block": 3,
378
+ "row": 22318
379
+ },
380
+ {
381
+ "path": "alphafold/model/geometry/rotation_matrix.py",
382
+ "sha256": "8b7130fd7d720e78576712a24747ddf99072f378b3709699a4d1200b46da1bf5",
383
+ "language": "Python",
384
+ "lines": 157,
385
+ "truncated": false,
386
+ "block": 3,
387
+ "row": 23432
388
+ },
389
+ {
390
+ "path": "alphafold/model/geometry/struct_of_array.py",
391
+ "sha256": "4e7c144fcbbcf5d795545b5ec4db346f61e2f89a6f53ddaa585e8c5162342ec7",
392
+ "language": "Python",
393
+ "lines": 220,
394
+ "truncated": false,
395
+ "block": 3,
396
+ "row": 24428
397
+ },
398
+ {
399
+ "path": "alphafold/model/geometry/test_utils.py",
400
+ "sha256": "244503b7528e57e5a5b4ff77f7e6e9510eb045d79f5343d3f788921b838a65af",
401
+ "language": "Python",
402
+ "lines": 98,
403
+ "truncated": false,
404
+ "block": 3,
405
+ "row": 22340
406
+ },
407
+ {
408
+ "path": "alphafold/model/geometry/utils.py",
409
+ "sha256": "5a804893aa0edc2b3e1daad50fc5ea693c4f44f2496f2d67073f4c0ebf15d293",
410
+ "language": "Python",
411
+ "lines": 23,
412
+ "truncated": false,
413
+ "block": 3,
414
+ "row": 18814
415
+ },
416
+ {
417
+ "path": "alphafold/model/geometry/vector.py",
418
+ "sha256": "d48c2f013a4792262604960434cb9a5b2cd773127ace9b9b87782b6e2b4955a6",
419
+ "language": "Python",
420
+ "lines": 217,
421
+ "truncated": false,
422
+ "block": 3,
423
+ "row": 24016
424
+ },
425
+ {
426
+ "path": "alphafold/model/layer_stack.py",
427
+ "sha256": "0fd8863656fa6c9b069569343eed823977cfcc87b5a3f8e12ae8e54a2451c4db",
428
+ "language": "Python",
429
+ "lines": 274,
430
+ "truncated": false,
431
+ "block": 3,
432
+ "row": 25025
433
+ },
434
+ {
435
+ "path": "alphafold/model/layer_stack_test.py",
436
+ "sha256": "b60da4d16300f4116c8e4027ae079f7b2fad2d0955a814d1323379b4f3a6bb2e",
437
+ "language": "Python",
438
+ "lines": 335,
439
+ "truncated": false,
440
+ "block": 3,
441
+ "row": 25441
442
+ },
443
+ {
444
+ "path": "alphafold/model/lddt.py",
445
+ "sha256": "22ebd462ad0493489fb0813fbb5392c4b26cca8807598c8ca12cf10e2ffa991d",
446
+ "language": "Python",
447
+ "lines": 88,
448
+ "truncated": false,
449
+ "block": 3,
450
+ "row": 21737
451
+ },
452
+ {
453
+ "path": "alphafold/model/lddt_test.py",
454
+ "sha256": "f1540d875ff7aae4d8430b6a7b17b300ccf72d731e0c259517a8b8ced5b08ab0",
455
+ "language": "Python",
456
+ "lines": 79,
457
+ "truncated": false,
458
+ "block": 3,
459
+ "row": 20609
460
+ },
461
+ {
462
+ "path": "alphafold/model/mapping.py",
463
+ "sha256": "9bb2bc5a3e412876bab62603387f7e51eda938808b9cfb3b92fd1180a3bc279e",
464
+ "language": "Python",
465
+ "lines": 223,
466
+ "truncated": false,
467
+ "block": 3,
468
+ "row": 24527
469
+ },
470
+ {
471
+ "path": "alphafold/model/model.py",
472
+ "sha256": "6f1254d558ebf19a062a6357845aeaf74809577c9ef88f6d07301624bbb6fdb0",
473
+ "language": "Python",
474
+ "lines": 192,
475
+ "truncated": false,
476
+ "block": 3,
477
+ "row": 24204
478
+ },
479
+ {
480
+ "path": "alphafold/model/modules.py",
481
+ "sha256": "dfad79e4f3c68db8b03bbca61a1e922f0d1f81ee0d9d3431ce8b01436098451d",
482
+ "language": "Python",
483
+ "lines": 2193,
484
+ "truncated": false,
485
+ "block": 4,
486
+ "row": 50
487
+ },
488
+ {
489
+ "path": "alphafold/model/modules_multimer.py",
490
+ "sha256": "b4cf8dff99d4461454602be64367f455ffb60355e53a1f3504845c1502428727",
491
+ "language": "Python",
492
+ "lines": 1178,
493
+ "truncated": false,
494
+ "block": 3,
495
+ "row": 27875
496
+ },
497
+ {
498
+ "path": "alphafold/model/prng.py",
499
+ "sha256": "09e62b8b2c24a2aa41704c0b474bfa45cc1b5a9121bf9d883232278de25f2a33",
500
+ "language": "Python",
501
+ "lines": 69,
502
+ "truncated": false,
503
+ "block": 3,
504
+ "row": 20143
505
+ },
506
+ {
507
+ "path": "alphafold/model/prng_test.py",
508
+ "sha256": "364ce654af07329c224f8316f444eb79f63cba6fd5a0cb42f7b992d7a37bbde6",
509
+ "language": "Python",
510
+ "lines": 46,
511
+ "truncated": false,
512
+ "block": 3,
513
+ "row": 19282
514
+ },
515
+ {
516
+ "path": "alphafold/model/quat_affine.py",
517
+ "sha256": "dfc1d3e3df0e1966ed361f4dbaf9fc59fd525a8458bb7c4187c9c70d168ef749",
518
+ "language": "Python",
519
+ "lines": 459,
520
+ "truncated": false,
521
+ "block": 3,
522
+ "row": 26768
523
+ },
524
+ {
525
+ "path": "alphafold/model/quat_affine_test.py",
526
+ "sha256": "73702f5f680a96a64507edb91ba9b6f9908f0348574727717fde46dc9015dd40",
527
+ "language": "Python",
528
+ "lines": 150,
529
+ "truncated": false,
530
+ "block": 3,
531
+ "row": 22973
532
+ },
533
+ {
534
+ "path": "alphafold/model/r3.py",
535
+ "sha256": "706df39f3f0c411bc2d7d422e2963305fb8d3e2d4d44b02ac50af99296df1cf8",
536
+ "language": "Python",
537
+ "lines": 320,
538
+ "truncated": false,
539
+ "block": 3,
540
+ "row": 25615
541
+ },
542
+ {
543
+ "path": "alphafold/model/tf/__init__.py",
544
+ "sha256": "7ee47be79cc30b61cf7111de0d29f6fa5e15737c741145502e998ff7b657ba05",
545
+ "language": "Python",
546
+ "lines": 14,
547
+ "truncated": false,
548
+ "block": 3,
549
+ "row": 18534
550
+ },
551
+ {
552
+ "path": "alphafold/model/tf/data_transforms.py",
553
+ "sha256": "e5518928e0595b0c85275221ce44018351672cbccf78d887e420ed104a1f97cd",
554
+ "language": "Python",
555
+ "lines": 625,
556
+ "truncated": false,
557
+ "block": 3,
558
+ "row": 27159
559
+ },
560
+ {
561
+ "path": "alphafold/model/tf/input_pipeline.py",
562
+ "sha256": "8e0a024f02f1e155bc207ce757ae8528331d601a39bfc28175f869fb6bd84c57",
563
+ "language": "Python",
564
+ "lines": 166,
565
+ "truncated": false,
566
+ "block": 3,
567
+ "row": 23203
568
+ },
569
+ {
570
+ "path": "alphafold/model/tf/protein_features.py",
571
+ "sha256": "d10a8d7e38394744cfc9123ff872dd12a879c292866fefa989434797013cce3e",
572
+ "language": "Python",
573
+ "lines": 129,
574
+ "truncated": false,
575
+ "block": 3,
576
+ "row": 22991
577
+ },
578
+ {
579
+ "path": "alphafold/model/tf/protein_features_test.py",
580
+ "sha256": "4a93652817daafc8bbda99a33fae9214ebfa8b3fed97aab3217c286f5922f773",
581
+ "language": "Python",
582
+ "lines": 54,
583
+ "truncated": false,
584
+ "block": 3,
585
+ "row": 19965
586
+ },
587
+ {
588
+ "path": "alphafold/model/tf/proteins_dataset.py",
589
+ "sha256": "8c9c2ef93e3ce23dd510c394090e0f5534dc8359cf7914a4825a226930d8a918",
590
+ "language": "Python",
591
+ "lines": 166,
592
+ "truncated": false,
593
+ "block": 3,
594
+ "row": 23755
595
+ },
596
+ {
597
+ "path": "alphafold/model/tf/shape_helpers.py",
598
+ "sha256": "0bdb468834e3f022d362c08d79f6f2a8f472120b0b660d3cd619d97721a84de1",
599
+ "language": "Python",
600
+ "lines": 47,
601
+ "truncated": false,
602
+ "block": 3,
603
+ "row": 19463
604
+ },
605
+ {
606
+ "path": "alphafold/model/tf/shape_helpers_test.py",
607
+ "sha256": "2abbbc95655b59a98d343a0f01b4b167c6d38b17323c13b0b0b73fcd9bf9ac6d",
608
+ "language": "Python",
609
+ "lines": 42,
610
+ "truncated": false,
611
+ "block": 3,
612
+ "row": 19353
613
+ },
614
+ {
615
+ "path": "alphafold/model/tf/shape_placeholders.py",
616
+ "sha256": "91457589ca3a16036ecd51b9674f8c3933492841be81f02eb9ddcfb206df1c87",
617
+ "language": "Python",
618
+ "lines": 20,
619
+ "truncated": false,
620
+ "block": 3,
621
+ "row": 18759
622
+ },
623
+ {
624
+ "path": "alphafold/model/tf/utils.py",
625
+ "sha256": "cbee68e094dd27c7cd5f1baf79daa4883af7a50a9ba2f6d190e183281804909a",
626
+ "language": "Python",
627
+ "lines": 47,
628
+ "truncated": false,
629
+ "block": 3,
630
+ "row": 19308
631
+ },
632
+ {
633
+ "path": "alphafold/model/utils.py",
634
+ "sha256": "edf6ffdeb9984684a8702eae41d4e6f19a65aaf5a8ae61408208ab6d6da3f4a8",
635
+ "language": "Python",
636
+ "lines": 153,
637
+ "truncated": false,
638
+ "block": 3,
639
+ "row": 22732
640
+ },
641
+ {
642
+ "path": "alphafold/notebooks/__init__.py",
643
+ "sha256": "3a0f9738a3587ec7d758ec64eb227dc913d26341f381e805b409ef9043443a9d",
644
+ "language": "Python",
645
+ "lines": 14,
646
+ "truncated": false,
647
+ "block": 3,
648
+ "row": 18522
649
+ },
650
+ {
651
+ "path": "alphafold/notebooks/notebook_utils.py",
652
+ "sha256": "1f0d09d1ade99d8528a8bd0a857c8a7a3728ad46f7a309b75396181d142d6d92",
653
+ "language": "Python",
654
+ "lines": 168,
655
+ "truncated": false,
656
+ "block": 3,
657
+ "row": 23938
658
+ },
659
+ {
660
+ "path": "alphafold/notebooks/notebook_utils_test.py",
661
+ "sha256": "73a4d5de382427fc19bcf0a81560cf2803a64a17f50582a016ca0cd30627ba86",
662
+ "language": "Python",
663
+ "lines": 196,
664
+ "truncated": false,
665
+ "block": 3,
666
+ "row": 25006
667
+ },
668
+ {
669
+ "path": "alphafold/relax/__init__.py",
670
+ "sha256": "0b52f881c1ab7a485ad2fc581d2c42c486c54f6b5ec00a46b7f3ceed0e786e3b",
671
+ "language": "Python",
672
+ "lines": 14,
673
+ "truncated": false,
674
+ "block": 3,
675
+ "row": 18511
676
+ },
677
+ {
678
+ "path": "alphafold/relax/amber_minimize.py",
679
+ "sha256": "0e45ebc99661d565b6784db3d17f493cfee2a2d40f6aaeebd182459e512adda5",
680
+ "language": "Python",
681
+ "lines": 505,
682
+ "truncated": false,
683
+ "block": 3,
684
+ "row": 26970
685
+ },
686
+ {
687
+ "path": "alphafold/relax/amber_minimize_test.py",
688
+ "sha256": "2bf127a782e6d6ea6059ddb043a7626f14aa967e441b3e84feb23bbfdde044b7",
689
+ "language": "Python",
690
+ "lines": 133,
691
+ "truncated": false,
692
+ "block": 3,
693
+ "row": 22479
694
+ },
695
+ {
696
+ "path": "alphafold/relax/cleanup.py",
697
+ "sha256": "7739a3f0a24061579c5f9720d60163d7b67b09a246c802e217340e2f22a5c9fd",
698
+ "language": "Python",
699
+ "lines": 127,
700
+ "truncated": false,
701
+ "block": 3,
702
+ "row": 22823
703
+ },
704
+ {
705
+ "path": "alphafold/relax/cleanup_test.py",
706
+ "sha256": "f6a6a1e2469e2f1e132abe7230ae9118bc1367f5c1bc64dda5ea4ee7174dd829",
707
+ "language": "Python",
708
+ "lines": 137,
709
+ "truncated": false,
710
+ "block": 3,
711
+ "row": 23671
712
+ },
713
+ {
714
+ "path": "alphafold/relax/relax.py",
715
+ "sha256": "7b4c453dcb170a6e842f66a5f5e6e2bcc4151958a24e1d2329fecf1a6a15f87a",
716
+ "language": "Python",
717
+ "lines": 84,
718
+ "truncated": false,
719
+ "block": 3,
720
+ "row": 21549
721
+ },
722
+ {
723
+ "path": "alphafold/relax/relax_test.py",
724
+ "sha256": "cf652c16e7dd8ef13f63b620acc8597daf5caffa52cf19ce669cff8b08307706",
725
+ "language": "Python",
726
+ "lines": 89,
727
+ "truncated": false,
728
+ "block": 3,
729
+ "row": 22020
730
+ },
731
+ {
732
+ "path": "alphafold/relax/utils.py",
733
+ "sha256": "07cd0d6f460fcee1857d7011eb5024458ece1742828b4cf8f27f6c9541465b57",
734
+ "language": "Python",
735
+ "lines": 69,
736
+ "truncated": false,
737
+ "block": 3,
738
+ "row": 20739
739
+ },
740
+ {
741
+ "path": "alphafold/relax/utils_test.py",
742
+ "sha256": "ac521509807ce0fec8ca61bb1dcca2a5ce993bfef7bf9da14bfc6bd0527acf5a",
743
+ "language": "Python",
744
+ "lines": 55,
745
+ "truncated": false,
746
+ "block": 3,
747
+ "row": 20162
748
+ },
749
+ {
750
+ "path": "run_alphafold_tcrmodel2.3.py",
751
+ "sha256": "3d55bc365c6308b26363befaaefa86704a0328e0d1aca77a15b2df3264252a37",
752
+ "language": "Python",
753
+ "lines": 712,
754
+ "truncated": false,
755
+ "block": 3,
756
+ "row": 27585
757
+ },
758
+ {
759
+ "path": "run_tcrmodel2.py",
760
+ "sha256": "13b3c3177ab1c7e38d59bb93e41aa22781094cd64b4596ec1d27acaa3eb49dc2",
761
+ "language": "Python",
762
+ "lines": 407,
763
+ "truncated": false,
764
+ "block": 3,
765
+ "row": 26717
766
+ },
767
+ {
768
+ "path": "run_tcrmodel2_ub_pmhc.py",
769
+ "sha256": "ab1e9aa9ae3216fddaa269e68e82a71098ccbe8eb0fa31171e74809368e2769a",
770
+ "language": "Python",
771
+ "lines": 385,
772
+ "truncated": false,
773
+ "block": 3,
774
+ "row": 26379
775
+ },
776
+ {
777
+ "path": "run_tcrmodel2_ub_tcr.py",
778
+ "sha256": "cfa0fcb14701299ab2cefbac3f49b31fe190ffcdd852ff8c92553b01ccbc6d4d",
779
+ "language": "Python",
780
+ "lines": 206,
781
+ "truncated": false,
782
+ "block": 3,
783
+ "row": 24464
784
+ },
785
+ {
786
+ "path": "scripts/grab_chains.pl",
787
+ "sha256": "885113e9c997273ab53d25b63ef6ca3d815b00992856b75a4cb108d80f3d9430",
788
+ "language": "Perl",
789
+ "lines": 40,
790
+ "truncated": false,
791
+ "block": 3,
792
+ "row": 17314
793
+ },
794
+ {
795
+ "path": "scripts/parse_cdr_confidence_from_json.py",
796
+ "sha256": "04b5320b034ca9cc8993ea8a473bd078c6b038d0d055c17a70502907e95d8841",
797
+ "language": "Python",
798
+ "lines": 32,
799
+ "truncated": false,
800
+ "block": 3,
801
+ "row": 19079
802
+ },
803
+ {
804
+ "path": "scripts/parse_tcr_seq.py",
805
+ "sha256": "628c063affadc3b22890ad2db42dde72d519eb073f143c5243e518dcff4a3cd9",
806
+ "language": "Python",
807
+ "lines": 57,
808
+ "truncated": false,
809
+ "block": 3,
810
+ "row": 19938
811
+ },
812
+ {
813
+ "path": "scripts/parse_tcr_seq_from_json.py",
814
+ "sha256": "6e1c78ce8d498cc9798cefa7656ec799096d97a2187f94f29f25ca515d0be89c",
815
+ "language": "Python",
816
+ "lines": 90,
817
+ "truncated": false,
818
+ "block": 3,
819
+ "row": 20583
820
+ },
821
+ {
822
+ "path": "scripts/pdb_utils.py",
823
+ "sha256": "c2e3705991c04a8c57f608138760d3df72c3dd6b24593784aebaf90224ac278f",
824
+ "language": "Python",
825
+ "lines": 116,
826
+ "truncated": false,
827
+ "block": 3,
828
+ "row": 21743
829
+ },
830
+ {
831
+ "path": "scripts/pmhc_templates.py",
832
+ "sha256": "184c933fae56fd12c9d076487b88ea2f6bfe7750170d65c500eb34d3227cd187",
833
+ "language": "Python",
834
+ "lines": 272,
835
+ "truncated": false,
836
+ "block": 3,
837
+ "row": 25475
838
+ },
839
+ {
840
+ "path": "scripts/seq_utils.py",
841
+ "sha256": "5dff9160918c840e167ebf02df87a96e63f03587af470ef161eb42959476e11c",
842
+ "language": "Python",
843
+ "lines": 63,
844
+ "truncated": false,
845
+ "block": 3,
846
+ "row": 19826
847
+ },
848
+ {
849
+ "path": "scripts/tcr_utils.py",
850
+ "sha256": "23c0090d9adbec50fdbd067dc745ca08d26f4986530c0b1724457aa2b30581b6",
851
+ "language": "Python",
852
+ "lines": 106,
853
+ "truncated": false,
854
+ "block": 3,
855
+ "row": 22605
856
+ },
857
+ {
858
+ "path": "singularity/run_tcrmodel2_singularity.sh",
859
+ "sha256": "affb3ab0b493967fd6f7130d15345cac614b60a439d536763291134cf8e33f76",
860
+ "language": "Shell",
861
+ "lines": 23,
862
+ "truncated": false,
863
+ "block": 4,
864
+ "row": 1708
865
+ }
866
+ ]
867
+ }
manifests/0b/github.com__tomori233__monkeynovelty.json ADDED
@@ -0,0 +1,660 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/tomori233/monkeynovelty",
4
+ "url": "https://github.com/TOMORI233/MonkeyNovelty",
5
+ "host": "github.com",
6
+ "commit": "baedc138695e4909c007508a777e419ae5ef629d",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "4c68588d99c0ff9277765d0ed78edf25c7b6cd990166e98ff0756278c8fb9e18",
14
+ "language": "License",
15
+ "lines": 21,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 7958
19
+ },
20
+ {
21
+ "path": "Main.m",
22
+ "sha256": "567689c27d66f0fc0036ca4851efd42c16ded8e602f6c01bd4f418cbd3a98c01",
23
+ "language": "MATLAB",
24
+ "lines": 99,
25
+ "truncated": false,
26
+ "block": 3,
27
+ "row": 12406
28
+ },
29
+ {
30
+ "path": "README.md",
31
+ "sha256": "63259f841e5b0c5c2c5407e11f6dca2e3cf9229e0d5783c7c911502f851d8323",
32
+ "language": "Text",
33
+ "lines": 295,
34
+ "truncated": false,
35
+ "block": 4,
36
+ "row": 2645
37
+ },
38
+ {
39
+ "path": "Step1_Preprocess_Export_Active.m",
40
+ "sha256": "645697d2226560ac9a771e86f3ed99687ca1b3d6819aef2c5b17e93844b2c93f",
41
+ "language": "MATLAB",
42
+ "lines": 268,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 16412
46
+ },
47
+ {
48
+ "path": "Step1_Preprocess_Export_ActiveExt.m",
49
+ "sha256": "06e2266b65b65ad3f9fa3b288c55d1e3a651200e7ed14d3c2f8ae9a4ef57c071",
50
+ "language": "MATLAB",
51
+ "lines": 182,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 15758
55
+ },
56
+ {
57
+ "path": "Step1_Preprocess_Export_Passive.m",
58
+ "sha256": "f2f22f14538b44f2cc725227d5d3b5d5357f8e412210a91dc8917bcdf9def030",
59
+ "language": "MATLAB",
60
+ "lines": 118,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 14941
64
+ },
65
+ {
66
+ "path": "Step2_Preprocess_ExcludeBadChannels.m",
67
+ "sha256": "b8c89c8426dd46808f62139592bc656508a109b80517e358d3785fd61d79cff2",
68
+ "language": "MATLAB",
69
+ "lines": 22,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 9739
73
+ },
74
+ {
75
+ "path": "Step2_Preprocess_Granger.m",
76
+ "sha256": "9d0644aab88632d785a2dca7a06e016ddce04502114aae846457d7ea00e1de3e",
77
+ "language": "MATLAB",
78
+ "lines": 119,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 14988
82
+ },
83
+ {
84
+ "path": "Step2_Preprocess_Rereference.m",
85
+ "sha256": "21d36375dd3ccc00f9cdb12b9e742807ccdd99695125f27411691bd9ea100fba",
86
+ "language": "MATLAB",
87
+ "lines": 74,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 13259
91
+ },
92
+ {
93
+ "path": "Step3_GenCWT_Baseline.m",
94
+ "sha256": "f61c700ad7f69e32eacdaa74e5d3b23f6391cd81b57a69a605dc3f1544228a0d",
95
+ "language": "MATLAB",
96
+ "lines": 51,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 12217
100
+ },
101
+ {
102
+ "path": "Step3_GenCWT_BaselineExt.m",
103
+ "sha256": "f52de0fcd83ea7cb80fb263a28157c8d29c72859601bf7de7533fdd485abfb7c",
104
+ "language": "MATLAB",
105
+ "lines": 50,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 12068
109
+ },
110
+ {
111
+ "path": "Step3_GenCWT_PE.m",
112
+ "sha256": "cbbb185874b48da06492bc77a330d377408d1a809097ace32f72095c35c2adaa",
113
+ "language": "MATLAB",
114
+ "lines": 51,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 12206
118
+ },
119
+ {
120
+ "path": "Step3_GenCWT_Prediction.m",
121
+ "sha256": "a284d488714a003f209cb910d1851b6f02b4f4d8870c7b116873451e870f0309",
122
+ "language": "MATLAB",
123
+ "lines": 60,
124
+ "truncated": false,
125
+ "block": 3,
126
+ "row": 12717
127
+ },
128
+ {
129
+ "path": "Step3_GenCWT_PredictionExt.m",
130
+ "sha256": "465f5a3bb55f0e0a7ef18b20ba647e9d924b2073c6735a94272f35d589e66504",
131
+ "language": "MATLAB",
132
+ "lines": 59,
133
+ "truncated": false,
134
+ "block": 3,
135
+ "row": 12614
136
+ },
137
+ {
138
+ "path": "Step4_GenGranger_Baseline.m",
139
+ "sha256": "b75111021031825348f9add55afa7b8418be78a923bc7033b610d91cf9f68bca",
140
+ "language": "MATLAB",
141
+ "lines": 84,
142
+ "truncated": false,
143
+ "block": 3,
144
+ "row": 13676
145
+ },
146
+ {
147
+ "path": "Step4_GenGranger_BaselineExt.m",
148
+ "sha256": "4a08a4a24684a7dd058b1de455453dd5f77a85f8db4528cef9ee45988f109c03",
149
+ "language": "MATLAB",
150
+ "lines": 84,
151
+ "truncated": false,
152
+ "block": 3,
153
+ "row": 13702
154
+ },
155
+ {
156
+ "path": "Step4_GenGranger_PE.m",
157
+ "sha256": "3135393294396b38f106412f1997e3e1d2bc8581865a240553e1c61b0aaeee23",
158
+ "language": "MATLAB",
159
+ "lines": 95,
160
+ "truncated": false,
161
+ "block": 3,
162
+ "row": 14108
163
+ },
164
+ {
165
+ "path": "Step4_GenGranger_Prediction.m",
166
+ "sha256": "f4ac0fbecefa40c6366f680e31fae147bf92f4c875b84438c992a15f4f0c9f99",
167
+ "language": "MATLAB",
168
+ "lines": 80,
169
+ "truncated": false,
170
+ "block": 3,
171
+ "row": 13331
172
+ },
173
+ {
174
+ "path": "Step4_GenGranger_PredictionExt.m",
175
+ "sha256": "a22e09100d5ab5b5c9e8213ccd1a15dcad31f431d569bfefc2a42c14a873e24b",
176
+ "language": "MATLAB",
177
+ "lines": 80,
178
+ "truncated": false,
179
+ "block": 3,
180
+ "row": 13341
181
+ },
182
+ {
183
+ "path": "Step5_AssignFreqBands.m",
184
+ "sha256": "ea45411fbb0ae25bdf11423eb54609ba6648ee0cb879534c3a4700756c72c98d",
185
+ "language": "MATLAB",
186
+ "lines": 56,
187
+ "truncated": false,
188
+ "block": 3,
189
+ "row": 11821
190
+ },
191
+ {
192
+ "path": "Step5_MinusBaseGranger_PE.m",
193
+ "sha256": "7d167f46a809a0981a336663cc879552661f5fc6a8404fed72174f8b511eafcf",
194
+ "language": "MATLAB",
195
+ "lines": 68,
196
+ "truncated": false,
197
+ "block": 3,
198
+ "row": 12547
199
+ },
200
+ {
201
+ "path": "Step5_MinusBaseGranger_Prediction.m",
202
+ "sha256": "3c1dd2c371183a6066334ce390f4b85d8dfada3cb917e10425ffca92c2087ecf",
203
+ "language": "MATLAB",
204
+ "lines": 77,
205
+ "truncated": false,
206
+ "block": 3,
207
+ "row": 13292
208
+ },
209
+ {
210
+ "path": "Step5_MinusBaseGranger_PredictionExt.m",
211
+ "sha256": "94da9b85e26b732d2025a8798daf0b7b3a08f501f4e2f57018a6876155e3a176",
212
+ "language": "MATLAB",
213
+ "lines": 76,
214
+ "truncated": false,
215
+ "block": 3,
216
+ "row": 13253
217
+ },
218
+ {
219
+ "path": "Step6_AverageGranger_PE.m",
220
+ "sha256": "08957f9c7d0906b81961de8f7d45554f55db005aed9d98c95e3e5e762046e11b",
221
+ "language": "MATLAB",
222
+ "lines": 40,
223
+ "truncated": false,
224
+ "block": 3,
225
+ "row": 11463
226
+ },
227
+ {
228
+ "path": "Step6_AverageGranger_Prediction.m",
229
+ "sha256": "e3e17c7a554641371afdbed1ecba8fd1800ccf5814c8999daca4ced92974c00a",
230
+ "language": "MATLAB",
231
+ "lines": 40,
232
+ "truncated": false,
233
+ "block": 3,
234
+ "row": 11475
235
+ },
236
+ {
237
+ "path": "Step7_DiffGrangerPTAvg_PE.m",
238
+ "sha256": "97326382ecdf370574191d839a81752aeeed894f3ffe19870564e7a23114d120",
239
+ "language": "MATLAB",
240
+ "lines": 543,
241
+ "truncated": false,
242
+ "block": 3,
243
+ "row": 16571
244
+ },
245
+ {
246
+ "path": "Step7_DiffGrangerPT_PE.m",
247
+ "sha256": "e5b51cdc1e66867934a3bef84db40aa8d9203d0189dcf0ba68bbcda72371edde",
248
+ "language": "MATLAB",
249
+ "lines": 282,
250
+ "truncated": false,
251
+ "block": 3,
252
+ "row": 16028
253
+ },
254
+ {
255
+ "path": "Step7_DiffGrangerStat_PE.m",
256
+ "sha256": "27b9d3c3bd564e955cb8c581a7ed5a6df6b0abe28034c12e3391f53a071b4206",
257
+ "language": "MATLAB",
258
+ "lines": 128,
259
+ "truncated": false,
260
+ "block": 3,
261
+ "row": 15015
262
+ },
263
+ {
264
+ "path": "Step8_1_F1A.m",
265
+ "sha256": "91215cfdc51e9d9cef28065e8ed311563cf48a7607c1e671e54cbaab6b3087ea",
266
+ "language": "MATLAB",
267
+ "lines": 47,
268
+ "truncated": false,
269
+ "block": 3,
270
+ "row": 10668
271
+ },
272
+ {
273
+ "path": "Step8_1_F1C.m",
274
+ "sha256": "88a9bd0f7f2a7702ca130a101f4ac7645e9358010808bb2da1d076bc45d259d4",
275
+ "language": "MATLAB",
276
+ "lines": 142,
277
+ "truncated": false,
278
+ "block": 3,
279
+ "row": 14785
280
+ },
281
+ {
282
+ "path": "Step8_1_SF2.m",
283
+ "sha256": "9662a4ecf4781d40f3ba058f3d59cfdb750a5c39400454f61a0d4e91de5efbcd",
284
+ "language": "MATLAB",
285
+ "lines": 262,
286
+ "truncated": false,
287
+ "block": 3,
288
+ "row": 15853
289
+ },
290
+ {
291
+ "path": "Step8_2_F2.m",
292
+ "sha256": "cb2d713e169dd398e7191f2dc481dda6745cc4acab6a414bf8c9f67fce7c9755",
293
+ "language": "MATLAB",
294
+ "lines": 1055,
295
+ "truncated": false,
296
+ "block": 3,
297
+ "row": 17159
298
+ },
299
+ {
300
+ "path": "Step8_2_SF3.m",
301
+ "sha256": "e5c4963bbf3be47a9a17d00038a8d4b431020f87df809c9e4ee71264db932225",
302
+ "language": "MATLAB",
303
+ "lines": 784,
304
+ "truncated": false,
305
+ "block": 3,
306
+ "row": 17106
307
+ },
308
+ {
309
+ "path": "Step8_3_F3_SF4.m",
310
+ "sha256": "db8108e52aee661396e81989826ca35b050a4a074165fa314ac53bb1c32dbfec",
311
+ "language": "MATLAB",
312
+ "lines": 516,
313
+ "truncated": false,
314
+ "block": 3,
315
+ "row": 16797
316
+ },
317
+ {
318
+ "path": "Step8_3_SF5.m",
319
+ "sha256": "fc665dc1ede16e5caab0472854d92cc50a4cfc11f173ef9cbb6ea25d1ef24347",
320
+ "language": "MATLAB",
321
+ "lines": 556,
322
+ "truncated": false,
323
+ "block": 3,
324
+ "row": 16856
325
+ },
326
+ {
327
+ "path": "Step8_4_F4.m",
328
+ "sha256": "c27fe450008064d05a368ed4bb5578bf269b89759f02c3e1a89d1a096f8d12b9",
329
+ "language": "MATLAB",
330
+ "lines": 515,
331
+ "truncated": false,
332
+ "block": 3,
333
+ "row": 16831
334
+ },
335
+ {
336
+ "path": "Step8_4_SF6.m",
337
+ "sha256": "c10a4ed644f9ede042eb105c3e6df917591ca530f214281196d98bc4d549aa47",
338
+ "language": "MATLAB",
339
+ "lines": 251,
340
+ "truncated": false,
341
+ "block": 3,
342
+ "row": 15878
343
+ },
344
+ {
345
+ "path": "Step8_4_SF7.m",
346
+ "sha256": "7cc824c755dffc66ca71f56c62edcdab5d0fd1444686a028dd81ae7bbe9474ba",
347
+ "language": "MATLAB",
348
+ "lines": 281,
349
+ "truncated": false,
350
+ "block": 3,
351
+ "row": 16124
352
+ },
353
+ {
354
+ "path": "Step8_5_F5.m",
355
+ "sha256": "c828ce62ba4493d23a4c9f697a5b2df8a246aca2062488bd2e6020691912eddc",
356
+ "language": "MATLAB",
357
+ "lines": 678,
358
+ "truncated": false,
359
+ "block": 3,
360
+ "row": 17005
361
+ },
362
+ {
363
+ "path": "Step8_5_SF8.m",
364
+ "sha256": "f485a4d5c52704b29f90814d48635a9feb6a28e8864d773d2dfa66434b4f434a",
365
+ "language": "MATLAB",
366
+ "lines": 500,
367
+ "truncated": false,
368
+ "block": 3,
369
+ "row": 16818
370
+ },
371
+ {
372
+ "path": "Step8_5_SF9.m",
373
+ "sha256": "2d6410ba615444a18a261cbce83a3fbfd7f9d752161fce7b4cb4a8dd6db3e5ec",
374
+ "language": "MATLAB",
375
+ "lines": 180,
376
+ "truncated": false,
377
+ "block": 3,
378
+ "row": 15552
379
+ },
380
+ {
381
+ "path": "Step8_6_F6.m",
382
+ "sha256": "826315beebba4e355738df78e8c9e2fbce7371a36a3b571b12b5f7e70b7c1f50",
383
+ "language": "MATLAB",
384
+ "lines": 1193,
385
+ "truncated": false,
386
+ "block": 3,
387
+ "row": 17177
388
+ },
389
+ {
390
+ "path": "Step8_7_SF10.m",
391
+ "sha256": "8b0ce4e014814c7e714f7576937b6b9c48502dc1b94a629a40100f05532f7568",
392
+ "language": "MATLAB",
393
+ "lines": 501,
394
+ "truncated": false,
395
+ "block": 3,
396
+ "row": 16802
397
+ },
398
+ {
399
+ "path": "Step8_8_SF11.m",
400
+ "sha256": "ce3cf7232286b2f40d68d09745fcbd0de07895d96c73826932859d6fa3e3f74e",
401
+ "language": "MATLAB",
402
+ "lines": 289,
403
+ "truncated": false,
404
+ "block": 3,
405
+ "row": 16093
406
+ },
407
+ {
408
+ "path": "Step9_1_RF1.m",
409
+ "sha256": "2f8a6e3d1689ad685b3105d03f23d3f2b28ff7356359e196c5604c1b96b1c474",
410
+ "language": "MATLAB",
411
+ "lines": 93,
412
+ "truncated": false,
413
+ "block": 3,
414
+ "row": 13584
415
+ },
416
+ {
417
+ "path": "private/loadCwtMultiChannelCrop_.m",
418
+ "sha256": "e798bf49447e578690a41eae7f6040cab6b9621eec9d3d94c16e8a7a37adb46d",
419
+ "language": "MATLAB",
420
+ "lines": 35,
421
+ "truncated": false,
422
+ "block": 3,
423
+ "row": 9864
424
+ },
425
+ {
426
+ "path": "private/loadCwtOneChannelCrop_.m",
427
+ "sha256": "8eae4d332e50a04ebde5519c8791152db108a557344a66192533e4c166eed423",
428
+ "language": "MATLAB",
429
+ "lines": 20,
430
+ "truncated": false,
431
+ "block": 3,
432
+ "row": 8932
433
+ },
434
+ {
435
+ "path": "private/plotConfig.m",
436
+ "sha256": "1c764aed2d986753d4a7e637aa7fbb9dba7e244f9a52290a6a27a28c93b28543",
437
+ "language": "MATLAB",
438
+ "lines": 48,
439
+ "truncated": false,
440
+ "block": 3,
441
+ "row": 11619
442
+ },
443
+ {
444
+ "path": "private/section_coherence_subplotImpl.m",
445
+ "sha256": "e99349e7b4eb5466d9f21fcacd616b6dde62f823d58a4f6ce19c3bc36fbbbb35",
446
+ "language": "MATLAB",
447
+ "lines": 95,
448
+ "truncated": false,
449
+ "block": 3,
450
+ "row": 13922
451
+ },
452
+ {
453
+ "path": "private/section_granger_categorization.m",
454
+ "sha256": "095f2b3849bccce43354be874d44bfac99fe1a06b9c737b2efe69c74ccd96207",
455
+ "language": "MATLAB",
456
+ "lines": 41,
457
+ "truncated": false,
458
+ "block": 3,
459
+ "row": 12608
460
+ },
461
+ {
462
+ "path": "private/section_granger_subplot.m",
463
+ "sha256": "f7c8d5d52b8948d4a67f54ff9841ff3c6987a480d8fce5889c9fa560997d1e26",
464
+ "language": "MATLAB",
465
+ "lines": 24,
466
+ "truncated": false,
467
+ "block": 3,
468
+ "row": 8785
469
+ },
470
+ {
471
+ "path": "private/section_granger_subplotImpl.m",
472
+ "sha256": "74e2bb5690106c0a935250222a3446e9bd195150f6532b2f1a923798c1bcba6c",
473
+ "language": "MATLAB",
474
+ "lines": 72,
475
+ "truncated": false,
476
+ "block": 3,
477
+ "row": 13320
478
+ },
479
+ {
480
+ "path": "private/section_granger_subplotImpl_population.m",
481
+ "sha256": "34aed8bddb7b3c8e473ce6c6d22554a15f9c759bdef61cf84e335ebce556cb63",
482
+ "language": "MATLAB",
483
+ "lines": 77,
484
+ "truncated": false,
485
+ "block": 3,
486
+ "row": 13812
487
+ },
488
+ {
489
+ "path": "private/section_granger_subplot_population.m",
490
+ "sha256": "0190f866aea7da5429f9c76fee0b9e7340e8cf62d3a5edeac7146807c3ebc144",
491
+ "language": "MATLAB",
492
+ "lines": 24,
493
+ "truncated": false,
494
+ "block": 3,
495
+ "row": 8864
496
+ },
497
+ {
498
+ "path": "private/section_granger_tuning_population.m",
499
+ "sha256": "ce0415d96a1c51f1eb15db8b0f004bfc762b2d8d4e1b03983bae736e5946018c",
500
+ "language": "MATLAB",
501
+ "lines": 32,
502
+ "truncated": false,
503
+ "block": 3,
504
+ "row": 10609
505
+ },
506
+ {
507
+ "path": "utils/batch_Plot_Granger.m",
508
+ "sha256": "578a4b296e4ad3c8418107e24cb5552bd063d9d703a0236f7679736b0029e272",
509
+ "language": "MATLAB",
510
+ "lines": 30,
511
+ "truncated": false,
512
+ "block": 3,
513
+ "row": 10338
514
+ },
515
+ {
516
+ "path": "utils/calSlope.m",
517
+ "sha256": "53e8b6547b9020120dbcf9ded2ae35078f9c2746389a0184260ae74312b82c4e",
518
+ "language": "MATLAB",
519
+ "lines": 22,
520
+ "truncated": false,
521
+ "block": 3,
522
+ "row": 9383
523
+ },
524
+ {
525
+ "path": "utils/computeDevRatio.m",
526
+ "sha256": "ee2290e95b43ea5a31cd525ac0e33e785c7918e1bf2662871e29b228810b7a81",
527
+ "language": "MATLAB",
528
+ "lines": 8,
529
+ "truncated": false,
530
+ "block": 3,
531
+ "row": 8504
532
+ },
533
+ {
534
+ "path": "utils/hideAxesExceptBox.m",
535
+ "sha256": "763ef469c0e8e98ced930af54d41bc1159f038643c7bd2d7980ad0b9ade3a957",
536
+ "language": "MATLAB",
537
+ "lines": 25,
538
+ "truncated": false,
539
+ "block": 3,
540
+ "row": 9068
541
+ },
542
+ {
543
+ "path": "utils/layout/JPG2PNG_No_BG.m",
544
+ "sha256": "8003c6b91295cf98f13b32f0747d03213ac72cf1d4cad8c6e71f199ba68b6cec",
545
+ "language": "MATLAB",
546
+ "lines": 8,
547
+ "truncated": false,
548
+ "block": 3,
549
+ "row": 8638
550
+ },
551
+ {
552
+ "path": "utils/layout/setLayout.m",
553
+ "sha256": "689ceac54e845b02d89d9dbf20a4685e53d360b82c99e16c0d1892dea91c15ac",
554
+ "language": "MATLAB",
555
+ "lines": 39,
556
+ "truncated": false,
557
+ "block": 3,
558
+ "row": 10894
559
+ },
560
+ {
561
+ "path": "utils/makeChannelCmb_.m",
562
+ "sha256": "f40eeb039bceb695f6e948a80cdedd28a608bbe1e2cfab2ac352b451067f830d",
563
+ "language": "MATLAB",
564
+ "lines": 19,
565
+ "truncated": false,
566
+ "block": 3,
567
+ "row": 9080
568
+ },
569
+ {
570
+ "path": "utils/makeUnionIndex_.m",
571
+ "sha256": "5481ce1f9671ccb82350da8103d80b6545d5308b3573fbc7bc6f7d188952cfd5",
572
+ "language": "MATLAB",
573
+ "lines": 27,
574
+ "truncated": false,
575
+ "block": 3,
576
+ "row": 9102
577
+ },
578
+ {
579
+ "path": "utils/matIndex.m",
580
+ "sha256": "ce369039e386110abda4279f8d85419a8122af8f17b2145bcf1c54aa1d23699f",
581
+ "language": "MATLAB",
582
+ "lines": 25,
583
+ "truncated": false,
584
+ "block": 3,
585
+ "row": 8758
586
+ },
587
+ {
588
+ "path": "utils/mu_combine_granger_pt_days.m",
589
+ "sha256": "553a923a255e8818d6cb23eb1badcfb9f7a712309e6aa616d9455722944ecb69",
590
+ "language": "MATLAB",
591
+ "lines": 110,
592
+ "truncated": false,
593
+ "block": 3,
594
+ "row": 13013
595
+ },
596
+ {
597
+ "path": "utils/mu_combine_granger_pt_ratios.m",
598
+ "sha256": "8a4e7cd392e5535da8e860a860a936a49c2cb52b35119b1a1add5ffbbbc570df",
599
+ "language": "MATLAB",
600
+ "lines": 263,
601
+ "truncated": false,
602
+ "block": 3,
603
+ "row": 15399
604
+ },
605
+ {
606
+ "path": "utils/plotLayout.m",
607
+ "sha256": "4f37e0271810ccc46fbbeefe598730b18ec9aa21b92f69ad883aa70a7ed202f8",
608
+ "language": "MATLAB",
609
+ "lines": 90,
610
+ "truncated": false,
611
+ "block": 3,
612
+ "row": 13329
613
+ },
614
+ {
615
+ "path": "utils/plotPE_TFRBandStats.m",
616
+ "sha256": "f8e1d5f6459ed005a23dffbd8e40c5cb2611c7027e7bbafe7a5740b7a554fe6b",
617
+ "language": "MATLAB",
618
+ "lines": 263,
619
+ "truncated": false,
620
+ "block": 3,
621
+ "row": 15421
622
+ },
623
+ {
624
+ "path": "utils/prunePTResult_.m",
625
+ "sha256": "e248dbb28778b1464b5260cf7713e942f7f4eb3b423142d239cf9d1904ba0935",
626
+ "language": "MATLAB",
627
+ "lines": 30,
628
+ "truncated": false,
629
+ "block": 3,
630
+ "row": 9768
631
+ },
632
+ {
633
+ "path": "utils/rms.m",
634
+ "sha256": "d3113b3c8afa341d5aa72eec8e6decea847bb721ac8b2b34bf09f61b6834249b",
635
+ "language": "MATLAB",
636
+ "lines": 45,
637
+ "truncated": false,
638
+ "block": 3,
639
+ "row": 10587
640
+ },
641
+ {
642
+ "path": "utils/sortCwtPathByChannel_.m",
643
+ "sha256": "2865b75e5873ed651ecfe04b88dbb4e32207126889b73f2c717d8887e363563d",
644
+ "language": "MATLAB",
645
+ "lines": 24,
646
+ "truncated": false,
647
+ "block": 3,
648
+ "row": 8942
649
+ },
650
+ {
651
+ "path": "utils/summarizeSlopeReduction.m",
652
+ "sha256": "1513228c5d5ac24fce0551f663bb78bcf6cf2da19529e78cc9e35b1b8c5b5eec",
653
+ "language": "MATLAB",
654
+ "lines": 114,
655
+ "truncated": false,
656
+ "block": 3,
657
+ "row": 14626
658
+ }
659
+ ]
660
+ }
manifests/0c/github.com__abdulhamidbatayhi123__kan-ftir-food-adulteration.json ADDED
@@ -0,0 +1,516 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/abdulhamidbatayhi123/kan-ftir-food-adulteration",
4
+ "url": "https://github.com/abdulhamidbatayhi123/kan-ftir-food-adulteration",
5
+ "host": "github.com",
6
+ "commit": "29292678fa02a2c719017538eb07297a3087510d",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "6e44524cdcb355c669438a99190604380799fcac65b223fe1662f607b2548115",
14
+ "language": "License",
15
+ "lines": 21,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 8081
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "8a6843a4681a5c389ae5f18aa4d48a86e33d63c132fc3ba65def1ab47485a1e8",
23
+ "language": "Text",
24
+ "lines": 111,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2578
28
+ },
29
+ {
30
+ "path": "build_revised_manuscript.py",
31
+ "sha256": "e2abd39014e40519a512d91fa41c8025347e3e69959d03b14a8ef6836010b0e4",
32
+ "language": "Python",
33
+ "lines": 908,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 28027
37
+ },
38
+ {
39
+ "path": "kanfood/__init__.py",
40
+ "sha256": "5f781fd0d7ddbf58cd64f1228743185f38fb71c468d62c7adecdc071adc771a5",
41
+ "language": "Python",
42
+ "lines": 1,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 17446
46
+ },
47
+ {
48
+ "path": "kanfood/_paths.py",
49
+ "sha256": "fc7a52e16583d8b76754160afaacaf1b5d8b29d4cac252f8e6cad28ebf486254",
50
+ "language": "Python",
51
+ "lines": 35,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 19397
55
+ },
56
+ {
57
+ "path": "kanfood/bands.py",
58
+ "sha256": "b66c7ee705d060ec34c1960b5ed57d1e4819cbe19257013cc5cdfccca3a00bb6",
59
+ "language": "Python",
60
+ "lines": 21,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 19015
64
+ },
65
+ {
66
+ "path": "kanfood/data.py",
67
+ "sha256": "569a52699a8c0974bdbbd4dabc4063bb491ec023b797474a26e0797b333785e5",
68
+ "language": "Python",
69
+ "lines": 127,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 23348
73
+ },
74
+ {
75
+ "path": "kanfood/features.py",
76
+ "sha256": "ad0f29e051548c7b4b60d83cff1255b8f4f5e7105e4c0d9d370854c1e5193011",
77
+ "language": "Python",
78
+ "lines": 53,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 20325
82
+ },
83
+ {
84
+ "path": "kanfood/fetch_mango.py",
85
+ "sha256": "5be692dda34fa12df52c2f2250459a8c25580edf6743a90dd9929b787427f41c",
86
+ "language": "Python",
87
+ "lines": 35,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 19340
91
+ },
92
+ {
93
+ "path": "kanfood/figures.py",
94
+ "sha256": "44c665736bbc2afb1f7d85326b43ab5e3ad560a11ebfe9f15b301fe2cabf51eb",
95
+ "language": "Python",
96
+ "lines": 30,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 19036
100
+ },
101
+ {
102
+ "path": "kanfood/interpret.py",
103
+ "sha256": "aecc2079edf9249fb33d458832a0e9a9954f78319f9f3095dff0735edceb38ac",
104
+ "language": "Python",
105
+ "lines": 219,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 25116
109
+ },
110
+ {
111
+ "path": "kanfood/interpret_mango.py",
112
+ "sha256": "6fa0278a897884be17f217191d8434d55a620274ac900b66ce1af7879cc1147e",
113
+ "language": "Python",
114
+ "lines": 171,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 24137
118
+ },
119
+ {
120
+ "path": "kanfood/metrics.py",
121
+ "sha256": "44816b4cd2807349ea6cc46422db4be22e1a9cf0c35c768e1ce073d4194adbc5",
122
+ "language": "Python",
123
+ "lines": 107,
124
+ "truncated": false,
125
+ "block": 3,
126
+ "row": 22434
127
+ },
128
+ {
129
+ "path": "kanfood/models.py",
130
+ "sha256": "ded9971904a3d98143de16f78bde7851253f1beb1388e5544dab9b0a0ce90153",
131
+ "language": "Python",
132
+ "lines": 255,
133
+ "truncated": false,
134
+ "block": 3,
135
+ "row": 25127
136
+ },
137
+ {
138
+ "path": "kanfood/phase2_robust.py",
139
+ "sha256": "18e92ca44de44234707eb00cc54afecd42549efd84c786ac2c0a78c6157ff3a0",
140
+ "language": "Python",
141
+ "lines": 224,
142
+ "truncated": false,
143
+ "block": 3,
144
+ "row": 25187
145
+ },
146
+ {
147
+ "path": "kanfood/phase3_transfer.py",
148
+ "sha256": "e982fe5bf5f9f26deb49e9693c6f80933d74b1bdfa665ba55ce41675011ebc65",
149
+ "language": "Python",
150
+ "lines": 134,
151
+ "truncated": false,
152
+ "block": 3,
153
+ "row": 23375
154
+ },
155
+ {
156
+ "path": "kanfood/preprocess.py",
157
+ "sha256": "a55e3aa73390054fb13231d38ff8ccd19293ace8a9a8a831993866ba10c1b8cf",
158
+ "language": "Python",
159
+ "lines": 57,
160
+ "truncated": false,
161
+ "block": 3,
162
+ "row": 19818
163
+ },
164
+ {
165
+ "path": "kanfood/report.py",
166
+ "sha256": "0cd10d05960e94e700070da39d00522d1bb8f85af536ba48cd3447e8578a8605",
167
+ "language": "Python",
168
+ "lines": 241,
169
+ "truncated": false,
170
+ "block": 3,
171
+ "row": 25464
172
+ },
173
+ {
174
+ "path": "kanfood/report_mango.py",
175
+ "sha256": "8949b6c7e2642afff66f4ce229f92e85cdb3a64d8a8ff3f9717e48157b25da9d",
176
+ "language": "Python",
177
+ "lines": 144,
178
+ "truncated": false,
179
+ "block": 3,
180
+ "row": 23618
181
+ },
182
+ {
183
+ "path": "kanfood/run_experiment.py",
184
+ "sha256": "60c37e66c4701ac2f4d491305c2c5b716b25be1d909d01c00b48137ccbf68061",
185
+ "language": "Python",
186
+ "lines": 199,
187
+ "truncated": false,
188
+ "block": 3,
189
+ "row": 25423
190
+ },
191
+ {
192
+ "path": "kanfood/run_mango.py",
193
+ "sha256": "623988e6122a758c2dca8524803523578da11b3be4da6506e2e9c35f078df465",
194
+ "language": "Python",
195
+ "lines": 181,
196
+ "truncated": false,
197
+ "block": 3,
198
+ "row": 25281
199
+ },
200
+ {
201
+ "path": "kanfood/split.py",
202
+ "sha256": "b6b11a64b672f27f0c19dbc69bc83fd073c5269a5bd8949b06b2f40fac301a89",
203
+ "language": "Python",
204
+ "lines": 16,
205
+ "truncated": false,
206
+ "block": 3,
207
+ "row": 18733
208
+ },
209
+ {
210
+ "path": "kanfood/tune.py",
211
+ "sha256": "cf30967dd7f998f0b7ae4e08ff012a64a64dd4d2d0aad9a26fd3761f0d9a5f01",
212
+ "language": "Python",
213
+ "lines": 52,
214
+ "truncated": false,
215
+ "block": 3,
216
+ "row": 21459
217
+ },
218
+ {
219
+ "path": "kanfood/validate.py",
220
+ "sha256": "3ef9096cd3de12d22c1d5e96b4d01020889a403e46568dc18cfa1a1185e2b39c",
221
+ "language": "Python",
222
+ "lines": 47,
223
+ "truncated": false,
224
+ "block": 3,
225
+ "row": 20793
226
+ },
227
+ {
228
+ "path": "paper2/__init__.py",
229
+ "sha256": "dd948322d90863586e0ab49d81430f603babc12b6079dd8adf2b0fc07aea1734",
230
+ "language": "Python",
231
+ "lines": 2,
232
+ "truncated": false,
233
+ "block": 3,
234
+ "row": 17637
235
+ },
236
+ {
237
+ "path": "paper2/advantages.py",
238
+ "sha256": "b478a1b3d3ecb10c6af990086ed6facd66da2b5d3990831f1aacee1528cf6e94",
239
+ "language": "Python",
240
+ "lines": 91,
241
+ "truncated": false,
242
+ "block": 3,
243
+ "row": 22038
244
+ },
245
+ {
246
+ "path": "paper2/bands_paper2.py",
247
+ "sha256": "f0d088967c12e0b9bb0ad787695914b9efbc2b43dafbc161f4078e80f4b589aa",
248
+ "language": "Python",
249
+ "lines": 29,
250
+ "truncated": false,
251
+ "block": 3,
252
+ "row": 19562
253
+ },
254
+ {
255
+ "path": "paper2/detect.py",
256
+ "sha256": "de7ba584be4efad69b1a4a742d926c018ff8584a9a3f8d3002af48a6100b0f70",
257
+ "language": "Python",
258
+ "lines": 25,
259
+ "truncated": false,
260
+ "block": 3,
261
+ "row": 19364
262
+ },
263
+ {
264
+ "path": "paper2/detection_lod_figs.py",
265
+ "sha256": "f4e6fd81e21e794abf8b4301c2277bf3b4c7ece2329f4a53af9984c0066e400e",
266
+ "language": "Python",
267
+ "lines": 91,
268
+ "truncated": false,
269
+ "block": 3,
270
+ "row": 22143
271
+ },
272
+ {
273
+ "path": "paper2/figstyle.py",
274
+ "sha256": "28d97601946f5a40e5fbcff242806298cf899b3fd51a07300924cd087ec5a4b9",
275
+ "language": "Python",
276
+ "lines": 26,
277
+ "truncated": false,
278
+ "block": 3,
279
+ "row": 19042
280
+ },
281
+ {
282
+ "path": "paper2/figures2.py",
283
+ "sha256": "e4d52c800309ad69303eece8a0936cfe6535d78a848ec94a1247c86046aae8f7",
284
+ "language": "Python",
285
+ "lines": 54,
286
+ "truncated": false,
287
+ "block": 3,
288
+ "row": 20170
289
+ },
290
+ {
291
+ "path": "paper2/interpret_food.py",
292
+ "sha256": "baabd26e38a353cb9a863a074082d1c4f182edc1029588ba0875a8e7a2464212",
293
+ "language": "Python",
294
+ "lines": 208,
295
+ "truncated": false,
296
+ "block": 3,
297
+ "row": 24797
298
+ },
299
+ {
300
+ "path": "paper2/loaders.py",
301
+ "sha256": "97fdcfc369a39e79f27e4ddb9dda042347f7bc1a50e083159668a5637ccac6bd",
302
+ "language": "Python",
303
+ "lines": 79,
304
+ "truncated": false,
305
+ "block": 3,
306
+ "row": 22017
307
+ },
308
+ {
309
+ "path": "paper2/parsers.py",
310
+ "sha256": "301d2a168ee979b1efa69fc3c6981d3c43ebbc83b1ca69c96f871c1b85f7f287",
311
+ "language": "Python",
312
+ "lines": 43,
313
+ "truncated": false,
314
+ "block": 3,
315
+ "row": 20165
316
+ },
317
+ {
318
+ "path": "paper2/preprocess_select.py",
319
+ "sha256": "2b9634779efff5869630178f0f5cbbb0a85ec63c733f9d221a46b749daa2a95d",
320
+ "language": "Python",
321
+ "lines": 25,
322
+ "truncated": false,
323
+ "block": 3,
324
+ "row": 19358
325
+ },
326
+ {
327
+ "path": "paper2/robustness.py",
328
+ "sha256": "442616e7ce0a58b8213c871d2c0e0364cd25e151596af106e5cc72e8e6ec8a22",
329
+ "language": "Python",
330
+ "lines": 91,
331
+ "truncated": false,
332
+ "block": 3,
333
+ "row": 22428
334
+ },
335
+ {
336
+ "path": "paper2/run_food.py",
337
+ "sha256": "d0e9852acd89253e9baa0d2bdc9b27f86001ece9603e3fb57cac710aee9356f0",
338
+ "language": "Python",
339
+ "lines": 186,
340
+ "truncated": false,
341
+ "block": 3,
342
+ "row": 25397
343
+ },
344
+ {
345
+ "path": "paper2/sanity.py",
346
+ "sha256": "6e78a618ffdae7b20f5a645bf0aef818d324c899b8efea0f9745c37f95e06bdf",
347
+ "language": "Python",
348
+ "lines": 47,
349
+ "truncated": false,
350
+ "block": 3,
351
+ "row": 20224
352
+ },
353
+ {
354
+ "path": "paper2/shap_compare.py",
355
+ "sha256": "dd148415c27e4ceb0ce032be29342f3e294058173032c3bf38f6d698529ce8e0",
356
+ "language": "Python",
357
+ "lines": 129,
358
+ "truncated": false,
359
+ "block": 3,
360
+ "row": 23117
361
+ },
362
+ {
363
+ "path": "paper2/synthesis.py",
364
+ "sha256": "290824621fe5c1668c881e0a3bdf31c4612ddf04db19ac52b82e677e0f76fe15",
365
+ "language": "Python",
366
+ "lines": 103,
367
+ "truncated": false,
368
+ "block": 3,
369
+ "row": 22686
370
+ },
371
+ {
372
+ "path": "paper2/tests/test_bands.py",
373
+ "sha256": "4cf7adad6f7610d697941e70376acf99f58b1e18ae29f180ea41c3f0f4206760",
374
+ "language": "Python",
375
+ "lines": 19,
376
+ "truncated": false,
377
+ "block": 3,
378
+ "row": 18452
379
+ },
380
+ {
381
+ "path": "paper2/tests/test_detect.py",
382
+ "sha256": "dff5ed3dc2e3eaf06f788192a8e5f4f8f7ebc88ca158b960425d4928daeb09b5",
383
+ "language": "Python",
384
+ "lines": 8,
385
+ "truncated": false,
386
+ "block": 3,
387
+ "row": 17747
388
+ },
389
+ {
390
+ "path": "paper2/tests/test_figures2.py",
391
+ "sha256": "391939efa9550c8bb6dc7fca6568fe9b4fa731c7cfbfd0e3e21f6b814af03a21",
392
+ "language": "Python",
393
+ "lines": 25,
394
+ "truncated": false,
395
+ "block": 3,
396
+ "row": 18719
397
+ },
398
+ {
399
+ "path": "paper2/tests/test_loaders.py",
400
+ "sha256": "2f6c0104a38255075ade89301ad3a424decea608c11335457a88d22aa01a5b95",
401
+ "language": "Python",
402
+ "lines": 74,
403
+ "truncated": false,
404
+ "block": 3,
405
+ "row": 21240
406
+ },
407
+ {
408
+ "path": "paper2/tests/test_parsers.py",
409
+ "sha256": "1c155824fdfc357376e20ef51afb4e6c8282ba478322290e898a514505ce4b5c",
410
+ "language": "Python",
411
+ "lines": 23,
412
+ "truncated": false,
413
+ "block": 3,
414
+ "row": 18981
415
+ },
416
+ {
417
+ "path": "paper2/tests/test_preprocess_select.py",
418
+ "sha256": "8d7389266302fbb9d3953396f9ee9ffaf1dcc3a87f2d67d0bab98c903484a134",
419
+ "language": "Python",
420
+ "lines": 14,
421
+ "truncated": false,
422
+ "block": 3,
423
+ "row": 18351
424
+ },
425
+ {
426
+ "path": "paper2/tests/test_smoke.py",
427
+ "sha256": "73aaee9d7f3469e1058dc288b66ab7009edc77b8ef55001e5e71ab2e3fd0827b",
428
+ "language": "Python",
429
+ "lines": 12,
430
+ "truncated": false,
431
+ "block": 3,
432
+ "row": 18185
433
+ },
434
+ {
435
+ "path": "paper2/tests/test_validate2.py",
436
+ "sha256": "5d19c9a2c464a6e1dd58a0d62bca86f6ad4965408e3d80877add5013987682ec",
437
+ "language": "Python",
438
+ "lines": 12,
439
+ "truncated": false,
440
+ "block": 3,
441
+ "row": 18430
442
+ },
443
+ {
444
+ "path": "paper2/validate2.py",
445
+ "sha256": "16477a9352c22ab30762c190c34d89eb06704ecdc3621a83cbf6c8adca32035f",
446
+ "language": "Python",
447
+ "lines": 20,
448
+ "truncated": false,
449
+ "block": 3,
450
+ "row": 19056
451
+ },
452
+ {
453
+ "path": "paper2_figs_diagrams.py",
454
+ "sha256": "8713ab931fcb422d7c05aca292653b910e564014fb0fad32df4e631a9966f21a",
455
+ "language": "Python",
456
+ "lines": 210,
457
+ "truncated": false,
458
+ "block": 3,
459
+ "row": 25398
460
+ },
461
+ {
462
+ "path": "paper2_figs_results.py",
463
+ "sha256": "4cd776f4f913e53750bf5eec68841dc61c4c871a245734598b552a2828156d66",
464
+ "language": "Python",
465
+ "lines": 290,
466
+ "truncated": false,
467
+ "block": 3,
468
+ "row": 26446
469
+ },
470
+ {
471
+ "path": "paper2_p59_sensitivity.py",
472
+ "sha256": "2a1c1daaf1ba435a9c4aadc2464a9219bd387786f8292f9d269f77da589a9b7b",
473
+ "language": "Python",
474
+ "lines": 51,
475
+ "truncated": false,
476
+ "block": 3,
477
+ "row": 20984
478
+ },
479
+ {
480
+ "path": "paper2_rerun_ablation.py",
481
+ "sha256": "2ed0345a719756a81500803ac42885603ac63558799f541d5191a9f705be791f",
482
+ "language": "Python",
483
+ "lines": 147,
484
+ "truncated": false,
485
+ "block": 3,
486
+ "row": 24221
487
+ },
488
+ {
489
+ "path": "paper2_rerun_lobo.py",
490
+ "sha256": "94bf1f54f7c77641ead3dcedaef049fb9cf5efcea26efe14ec6bcb64d7de9a36",
491
+ "language": "Python",
492
+ "lines": 72,
493
+ "truncated": false,
494
+ "block": 3,
495
+ "row": 21821
496
+ },
497
+ {
498
+ "path": "paper2_rerun_lod_ci.py",
499
+ "sha256": "c6fbac1f92995d2c558f6a01d1ae1d93c4e1febbcdfc7211fbf76b527e4d2df9",
500
+ "language": "Python",
501
+ "lines": 39,
502
+ "truncated": false,
503
+ "block": 3,
504
+ "row": 20014
505
+ },
506
+ {
507
+ "path": "paper2_rerun_stability.py",
508
+ "sha256": "e73e1850577c3e000424228de86c8ab7ce614c8e0223e067b2ff886fdb488f3e",
509
+ "language": "Python",
510
+ "lines": 182,
511
+ "truncated": false,
512
+ "block": 3,
513
+ "row": 24881
514
+ }
515
+ ]
516
+ }
manifests/0c/github.com__dahuilangda__mirror-peptidizer.json ADDED
@@ -0,0 +1,372 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/dahuilangda/mirror-peptidizer",
4
+ "url": "https://github.com/dahuilangda/Mirror-Peptidizer",
5
+ "host": "github.com",
6
+ "commit": "a517c8fb6711649284116135c2fe2c7e1719870b",
7
+ "license": "Apache-2.0",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "22a7ae47da760f8fbf95318f1d57302a7044429e260ae0963fa07b66a997c3f4",
14
+ "language": "License",
15
+ "lines": 202,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 8145
19
+ },
20
+ {
21
+ "path": "ProteinMPNN/colab_notebooks/quickdemo.ipynb",
22
+ "sha256": "0f9d3fccb81150c4b94aa6474bebfa7f5536876cf35c262bb1996b3f469c2d9b",
23
+ "language": "Jupyter",
24
+ "lines": 253,
25
+ "truncated": false,
26
+ "block": 3,
27
+ "row": 7634
28
+ },
29
+ {
30
+ "path": "ProteinMPNN/vanilla_proteinmpnn/examples/submit_example_1.sh",
31
+ "sha256": "75d5209d318365fdbc3a572ef8a1129d0c813b9f1be2e270463fec7cd422b0d1",
32
+ "language": "Shell",
33
+ "lines": 27,
34
+ "truncated": false,
35
+ "block": 4,
36
+ "row": 1634
37
+ },
38
+ {
39
+ "path": "ProteinMPNN/vanilla_proteinmpnn/examples/submit_example_2.sh",
40
+ "sha256": "bcab55cd40c6db61b44a041870c51966230f862d35e06423e9a3257b26f89502",
41
+ "language": "Shell",
42
+ "lines": 32,
43
+ "truncated": false,
44
+ "block": 4,
45
+ "row": 1733
46
+ },
47
+ {
48
+ "path": "ProteinMPNN/vanilla_proteinmpnn/examples/submit_example_3.sh",
49
+ "sha256": "3083efb8b757f8612d556be736386546a7bf2cc223c544f21551b5e4a2a271f0",
50
+ "language": "Shell",
51
+ "lines": 26,
52
+ "truncated": false,
53
+ "block": 4,
54
+ "row": 1588
55
+ },
56
+ {
57
+ "path": "ProteinMPNN/vanilla_proteinmpnn/examples/submit_example_4.sh",
58
+ "sha256": "85bbac99a5ec5878e1f32f8b7fbd5be96e164edce530fc686d7a81dadfaff8ad",
59
+ "language": "Shell",
60
+ "lines": 39,
61
+ "truncated": false,
62
+ "block": 4,
63
+ "row": 1872
64
+ },
65
+ {
66
+ "path": "ProteinMPNN/vanilla_proteinmpnn/examples/submit_example_5.sh",
67
+ "sha256": "9a8d969233dba1519b41ce37ccaf8f5d3a50a75789af2e5c51cfa132e3aa3e0a",
68
+ "language": "Shell",
69
+ "lines": 43,
70
+ "truncated": false,
71
+ "block": 4,
72
+ "row": 1935
73
+ },
74
+ {
75
+ "path": "ProteinMPNN/vanilla_proteinmpnn/examples/submit_example_6.sh",
76
+ "sha256": "f7947cef8ae71e513567d00125562ec32b2c1c5bba62e77d27f33cb33d686b38",
77
+ "language": "Shell",
78
+ "lines": 33,
79
+ "truncated": false,
80
+ "block": 4,
81
+ "row": 1736
82
+ },
83
+ {
84
+ "path": "ProteinMPNN/vanilla_proteinmpnn/examples/submit_example_7.sh",
85
+ "sha256": "af93db0763ac47c428f8c1b4c42752196ec098190eaec6e0deadb859260e293b",
86
+ "language": "Shell",
87
+ "lines": 40,
88
+ "truncated": false,
89
+ "block": 4,
90
+ "row": 1815
91
+ },
92
+ {
93
+ "path": "ProteinMPNN/vanilla_proteinmpnn/helper_scripts/assign_fixed_chains.py",
94
+ "sha256": "3402950dae8e65fa1800f1211ead9db9ede56aa0d599c186994262a30fc1ba81",
95
+ "language": "Python",
96
+ "lines": 39,
97
+ "truncated": false,
98
+ "block": 1,
99
+ "row": 6023
100
+ },
101
+ {
102
+ "path": "ProteinMPNN/vanilla_proteinmpnn/helper_scripts/make_bias_AA.py",
103
+ "sha256": "c74b570c104b9e58722361cdd681e96408d9af0d1ea05a78b73672a71cb25754",
104
+ "language": "Python",
105
+ "lines": 27,
106
+ "truncated": false,
107
+ "block": 1,
108
+ "row": 5597
109
+ },
110
+ {
111
+ "path": "ProteinMPNN/vanilla_proteinmpnn/helper_scripts/make_bias_per_res_dict.py",
112
+ "sha256": "7af21ab1a59c0a2f1dc044a1f9b609a57bdddb06714a00640b1dd0c527e748a5",
113
+ "language": "Python",
114
+ "lines": 53,
115
+ "truncated": false,
116
+ "block": 1,
117
+ "row": 6235
118
+ },
119
+ {
120
+ "path": "ProteinMPNN/vanilla_proteinmpnn/helper_scripts/make_fixed_positions_dict.py",
121
+ "sha256": "0bb962f416fe4cce6ebfefc23e0a18ed8ce348213bc2356ccd9b81e9c84ad821",
122
+ "language": "Python",
123
+ "lines": 42,
124
+ "truncated": false,
125
+ "block": 3,
126
+ "row": 19877
127
+ },
128
+ {
129
+ "path": "ProteinMPNN/vanilla_proteinmpnn/helper_scripts/make_pos_neg_tied_positions_dict.py",
130
+ "sha256": "97736a00601ae54433fc074950b79ee661901c2fd8dc3d542ce2f5023811370c",
131
+ "language": "Python",
132
+ "lines": 73,
133
+ "truncated": false,
134
+ "block": 1,
135
+ "row": 7727
136
+ },
137
+ {
138
+ "path": "ProteinMPNN/vanilla_proteinmpnn/helper_scripts/make_tied_positions_dict.py",
139
+ "sha256": "3d9b3cece5d61faf7cdacac49d33fc8a16cc5e54f103b76218c8ce5b1b6b4e0f",
140
+ "language": "Python",
141
+ "lines": 61,
142
+ "truncated": false,
143
+ "block": 1,
144
+ "row": 7405
145
+ },
146
+ {
147
+ "path": "ProteinMPNN/vanilla_proteinmpnn/helper_scripts/other_tools/make_omit_AA.py",
148
+ "sha256": "a84eb412c6d916befb0aa7190915408ea43185ad0c822aff3123ad48c35a2616",
149
+ "language": "Python",
150
+ "lines": 39,
151
+ "truncated": false,
152
+ "block": 1,
153
+ "row": 6398
154
+ },
155
+ {
156
+ "path": "ProteinMPNN/vanilla_proteinmpnn/helper_scripts/other_tools/make_pssm_dict.py",
157
+ "sha256": "3e1cd315602c0221f303ea95a12b44527a2b5de181ce085ec66397c92ebc2ae5",
158
+ "language": "Python",
159
+ "lines": 64,
160
+ "truncated": false,
161
+ "block": 1,
162
+ "row": 6405
163
+ },
164
+ {
165
+ "path": "ProteinMPNN/vanilla_proteinmpnn/helper_scripts/parse_multiple_chains.py",
166
+ "sha256": "93159c5f8d2c91a87d14e77b85d2e5f4b027e837294197e39d305cf388de042e",
167
+ "language": "Python",
168
+ "lines": 155,
169
+ "truncated": false,
170
+ "block": 3,
171
+ "row": 23377
172
+ },
173
+ {
174
+ "path": "ProteinMPNN/vanilla_proteinmpnn/helper_scripts/parse_multiple_chains.sh",
175
+ "sha256": "dea7c51f307a9547e78fcca147ff3c6a71efa7c1b312aa2317dcb6c69b6f3a10",
176
+ "language": "Shell",
177
+ "lines": 7,
178
+ "truncated": false,
179
+ "block": 1,
180
+ "row": 11140
181
+ },
182
+ {
183
+ "path": "ProteinMPNN/vanilla_proteinmpnn/protein_mpnn_run.py",
184
+ "sha256": "2b97844ce23a65cef0294c26aa2d899308873dcfa9a53e1a23c75dbb80783b11",
185
+ "language": "Python",
186
+ "lines": 361,
187
+ "truncated": false,
188
+ "block": 3,
189
+ "row": 27208
190
+ },
191
+ {
192
+ "path": "ProteinMPNN/vanilla_proteinmpnn/protein_mpnn_utils.py",
193
+ "sha256": "f71b73729ff9d0c46c6797930646e2f8a226eef27a59cd7792ed86b193bc6ea9",
194
+ "language": "Python",
195
+ "lines": 1119,
196
+ "truncated": false,
197
+ "block": 3,
198
+ "row": 27986
199
+ },
200
+ {
201
+ "path": "README.md",
202
+ "sha256": "d1a219b7f680c538c8bd024d0797303e778e6d692c14063a9909344bd3d96b4d",
203
+ "language": "Text",
204
+ "lines": 474,
205
+ "truncated": false,
206
+ "block": 4,
207
+ "row": 2733
208
+ },
209
+ {
210
+ "path": "bo/__init__.py",
211
+ "sha256": "6eb390711a2dfc1849571f66b4a446dda97a19c07390fffa10d32b041fbc52d1",
212
+ "language": "Python",
213
+ "lines": 20,
214
+ "truncated": false,
215
+ "block": 3,
216
+ "row": 18725
217
+ },
218
+ {
219
+ "path": "bo/acquisition.py",
220
+ "sha256": "3a95d671e6ed0fd2ad1681b1e71b6fb61a1311bd20e2c38ed31f582ca5fa7fe5",
221
+ "language": "Python",
222
+ "lines": 56,
223
+ "truncated": false,
224
+ "block": 3,
225
+ "row": 19849
226
+ },
227
+ {
228
+ "path": "bo/encoders.py",
229
+ "sha256": "144b299a115edb3e3fb6ea18d226d86e6841f79ce4254ee861dac53c5a337d72",
230
+ "language": "Python",
231
+ "lines": 265,
232
+ "truncated": false,
233
+ "block": 3,
234
+ "row": 25091
235
+ },
236
+ {
237
+ "path": "bo/explorers.py",
238
+ "sha256": "5d087541548b0e05e1f670b6df4bf2afc76b36732e4f777718adb8a90de614af",
239
+ "language": "Python",
240
+ "lines": 1401,
241
+ "truncated": false,
242
+ "block": 3,
243
+ "row": 28009
244
+ },
245
+ {
246
+ "path": "bo/landscape.py",
247
+ "sha256": "3ae95a98af050435dd7e3bfbe9f867b149a4500d4921ac60a556820899daede4",
248
+ "language": "Python",
249
+ "lines": 80,
250
+ "truncated": false,
251
+ "block": 3,
252
+ "row": 21048
253
+ },
254
+ {
255
+ "path": "bo/models.py",
256
+ "sha256": "5365b564b0f1d164a3595a208cd5aba5a6e2e8db3eca81b00c38456c41ea656e",
257
+ "language": "Python",
258
+ "lines": 165,
259
+ "truncated": false,
260
+ "block": 3,
261
+ "row": 24027
262
+ },
263
+ {
264
+ "path": "bo/run_bo.py",
265
+ "sha256": "7752409325798387684a6a58f0c9ead1c467b1529d0cdd35f6eef032ac6ad123",
266
+ "language": "Python",
267
+ "lines": 357,
268
+ "truncated": false,
269
+ "block": 3,
270
+ "row": 26285
271
+ },
272
+ {
273
+ "path": "bo/scoring.py",
274
+ "sha256": "b44bed735d834f5f13e6a6dace8d0a9d135e95546d4e0f1cb82a463571bbd8d9",
275
+ "language": "Python",
276
+ "lines": 501,
277
+ "truncated": false,
278
+ "block": 3,
279
+ "row": 26825
280
+ },
281
+ {
282
+ "path": "docs/scripts/mirror_axis_equivalence.py",
283
+ "sha256": "ff6095804943b8a3fd6c1bb9520f5d2b5f46e9d0673fabcd9fe30ff40d99aa62",
284
+ "language": "Python",
285
+ "lines": 287,
286
+ "truncated": false,
287
+ "block": 3,
288
+ "row": 25834
289
+ },
290
+ {
291
+ "path": "docs/scripts/plot_phi_psi_mirror_qc.py",
292
+ "sha256": "d66e53273a4ecb1161e48efbf6b4ca8ca4e37e8df4d3d5dd41d1bded4a00acb0",
293
+ "language": "Python",
294
+ "lines": 611,
295
+ "truncated": false,
296
+ "block": 3,
297
+ "row": 27032
298
+ },
299
+ {
300
+ "path": "docs/scripts/run_recovery.py",
301
+ "sha256": "0786df4bc9f433fdfe9a804d67bfb73493d04e803555827aaf18570b139d086c",
302
+ "language": "Python",
303
+ "lines": 681,
304
+ "truncated": false,
305
+ "block": 3,
306
+ "row": 27696
307
+ },
308
+ {
309
+ "path": "examples/ex1_l_peptide_design.ipynb",
310
+ "sha256": "7c582fe3418b7d99eb6e33cd8e43417b643d94834a6401cae575417bccc3727b",
311
+ "language": "Jupyter",
312
+ "lines": 68,
313
+ "truncated": false,
314
+ "block": 3,
315
+ "row": 7107
316
+ },
317
+ {
318
+ "path": "examples/ex2_d_peptide_design.ipynb",
319
+ "sha256": "f1a691871029b421f9eb386c114eb0cb932f28de54f8f9fef34e78b43978ff41",
320
+ "language": "Jupyter",
321
+ "lines": 72,
322
+ "truncated": false,
323
+ "block": 3,
324
+ "row": 7134
325
+ },
326
+ {
327
+ "path": "run_design.py",
328
+ "sha256": "91a1e2b9de301cdd97c6d4a52c36d919e104bc9595c20e03155722ce23e1f5c1",
329
+ "language": "Python",
330
+ "lines": 680,
331
+ "truncated": false,
332
+ "block": 3,
333
+ "row": 27623
334
+ },
335
+ {
336
+ "path": "utils/chroma_sample.py",
337
+ "sha256": "c99c9758a2e3c7f8985f7da4f7c22527c7aee853c96ea0c91e9c79e2e5a8e9fd",
338
+ "language": "Python",
339
+ "lines": 127,
340
+ "truncated": false,
341
+ "block": 3,
342
+ "row": 22568
343
+ },
344
+ {
345
+ "path": "utils/pdb_processing.py",
346
+ "sha256": "e26902b77c9c768c37c82b14ac550cf2ac8eb77b874158cb906c3c2dd5ab91e3",
347
+ "language": "Python",
348
+ "lines": 226,
349
+ "truncated": false,
350
+ "block": 3,
351
+ "row": 24265
352
+ },
353
+ {
354
+ "path": "utils/pose_filtering.py",
355
+ "sha256": "de82b3e4adabfe8dbdfd4e2228c0f5407551d1e67894a8288838e0fa02646ba4",
356
+ "language": "Python",
357
+ "lines": 183,
358
+ "truncated": false,
359
+ "block": 3,
360
+ "row": 23640
361
+ },
362
+ {
363
+ "path": "utils/protein_mpnn.py",
364
+ "sha256": "e69ddc3a4da2ad9d9570a485ef335b2d6b15e8a870c6ac025fbd2a72ac3a7fea",
365
+ "language": "Python",
366
+ "lines": 399,
367
+ "truncated": false,
368
+ "block": 3,
369
+ "row": 26568
370
+ }
371
+ ]
372
+ }
manifests/0c/github.com__nsblab__braineigenmodes.json ADDED
@@ -0,0 +1,2658 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/nsblab/braineigenmodes",
4
+ "url": "https://github.com/NSBLab/BrainEigenmodes",
5
+ "host": "github.com",
6
+ "commit": "986543aad2b921e9f51e4a26bec41f147ddf166f",
7
+ "license": "Apache-2.0",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "c71d239df91726fc519c6eb72d318ec65820627232b2f796219e87dcf35d0ab4",
14
+ "language": "License",
15
+ "lines": 201,
16
+ "truncated": false,
17
+ "block": 1,
18
+ "row": 2216
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "cb7db8790aa005c3524cf823a9dea3e6ae4412979cf447de27042f547ce905d3",
23
+ "language": "Text",
24
+ "lines": 76,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2566
28
+ },
29
+ {
30
+ "path": "demo_connectome_eigenmode_calculation.m",
31
+ "sha256": "29d80ee069ef03b0e5f4f9d393df0ffa2302ff94034c7599ed748ae2dbf8a292",
32
+ "language": "MATLAB",
33
+ "lines": 214,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 16014
37
+ },
38
+ {
39
+ "path": "demo_eigenmode_analysis.m",
40
+ "sha256": "44aa4cff512e16521a337d6a174e44f674dfb50c3543413cdf9c8777ca5e0993",
41
+ "language": "MATLAB",
42
+ "lines": 269,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 16363
46
+ },
47
+ {
48
+ "path": "demo_eigenmode_calculation.sh",
49
+ "sha256": "ac9b7f0025d7f411d4ac0ff13f37c749868e104ffc84a099c1bcb79872b93f68",
50
+ "language": "Shell",
51
+ "lines": 105,
52
+ "truncated": false,
53
+ "block": 4,
54
+ "row": 2185
55
+ },
56
+ {
57
+ "path": "demo_eigenmode_visualization.m",
58
+ "sha256": "87549caafe371591d6efc7aaac0fbb88feb5c525cd9061a4eb5f7c325cf216d0",
59
+ "language": "MATLAB",
60
+ "lines": 143,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 15357
64
+ },
65
+ {
66
+ "path": "demo_wave_model_simulation.m",
67
+ "sha256": "10474955f2eee9b29557d6afc5527710f67f7251a7b44d58e1b59beb10bc0e43",
68
+ "language": "MATLAB",
69
+ "lines": 223,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 16039
73
+ },
74
+ {
75
+ "path": "functions_matlab/bluewhitered.m",
76
+ "sha256": "d26f6ce040173722e274bad95579cc2219e279b330bc7dabd2bc1ccc52778d4b",
77
+ "language": "MATLAB",
78
+ "lines": 101,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 13197
82
+ },
83
+ {
84
+ "path": "functions_matlab/calc_LaplacianMatrix.m",
85
+ "sha256": "bcf59dc719b8e6ac3afea900c7c99cf2468810a7916b99f4a9143b9296bb4af1",
86
+ "language": "MATLAB",
87
+ "lines": 22,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 8863
91
+ },
92
+ {
93
+ "path": "functions_matlab/calc_eigendecomposition.m",
94
+ "sha256": "9846596c705011ffd587230f8ccaab5644a6ada2a06ea4f027005e4e99dd804a",
95
+ "language": "MATLAB",
96
+ "lines": 43,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 10563
100
+ },
101
+ {
102
+ "path": "functions_matlab/calc_lag_projection.m",
103
+ "sha256": "0b3dc9c7ddebfcfa9ea358a038d7c0b6146968dad5424e4baa7da8d994cb70e7",
104
+ "language": "MATLAB",
105
+ "lines": 174,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 15023
109
+ },
110
+ {
111
+ "path": "functions_matlab/calc_network_eigenmode.m",
112
+ "sha256": "0f294d9b846df4b140b1880279b82b344efbcc6f87aa6ac1bb415be12ee32643",
113
+ "language": "MATLAB",
114
+ "lines": 33,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 10016
118
+ },
119
+ {
120
+ "path": "functions_matlab/calc_normalize_timeseries.m",
121
+ "sha256": "0cca084add0850b0a545fe2025280673d22de91765739c74a96d471681777e51",
122
+ "language": "MATLAB",
123
+ "lines": 18,
124
+ "truncated": false,
125
+ "block": 3,
126
+ "row": 9054
127
+ },
128
+ {
129
+ "path": "functions_matlab/calc_parcellate.m",
130
+ "sha256": "fda9a7ba1a9f2e652a3bfb8933735745f5c82d1bccb764f38b00db087fabe60b",
131
+ "language": "MATLAB",
132
+ "lines": 31,
133
+ "truncated": false,
134
+ "block": 3,
135
+ "row": 9571
136
+ },
137
+ {
138
+ "path": "functions_matlab/calc_power_spectrum.m",
139
+ "sha256": "3f934c04544cb413eb01d341ddfd160d985c0c456d925af4eb668f968cfe64c9",
140
+ "language": "MATLAB",
141
+ "lines": 22,
142
+ "truncated": false,
143
+ "block": 3,
144
+ "row": 9223
145
+ },
146
+ {
147
+ "path": "functions_matlab/calc_surface_connectivity.m",
148
+ "sha256": "acc9fee4a8bab7b73893154af0dc05e82095166458c72be5da4cb61d51812fb8",
149
+ "language": "MATLAB",
150
+ "lines": 44,
151
+ "truncated": false,
152
+ "block": 3,
153
+ "row": 10850
154
+ },
155
+ {
156
+ "path": "functions_matlab/calc_triu_ind.m",
157
+ "sha256": "4d2d2d3acaddbf77bf4b5eb35921addedb56c64d3ee8a2e72e4be868c73bf480",
158
+ "language": "MATLAB",
159
+ "lines": 17,
160
+ "truncated": false,
161
+ "block": 3,
162
+ "row": 8606
163
+ },
164
+ {
165
+ "path": "functions_matlab/cbrewer/cbrewer/cbrewer/cbrewer.m",
166
+ "sha256": "cb17c32da6d884885118a9f67c88a7cca4e5ad2f74e50d0e04e27a5aa564c664",
167
+ "language": "MATLAB",
168
+ "lines": 128,
169
+ "truncated": false,
170
+ "block": 3,
171
+ "row": 14710
172
+ },
173
+ {
174
+ "path": "functions_matlab/cbrewer/cbrewer/cbrewer/change_jet.m",
175
+ "sha256": "c44166f6a26fe29b78c3c73d5f13a72d7c5503cf473d92aed08db7594f50c5f5",
176
+ "language": "MATLAB",
177
+ "lines": 64,
178
+ "truncated": false,
179
+ "block": 3,
180
+ "row": 11916
181
+ },
182
+ {
183
+ "path": "functions_matlab/cbrewer/cbrewer/cbrewer/interpolate_cbrewer.m",
184
+ "sha256": "8c4463904c9ca678734fb6da9877923eb674b749f1edc5017009416bae40c43c",
185
+ "language": "MATLAB",
186
+ "lines": 36,
187
+ "truncated": false,
188
+ "block": 3,
189
+ "row": 10581
190
+ },
191
+ {
192
+ "path": "functions_matlab/cbrewer/cbrewer/cbrewer/plot_brewer_cmap.m",
193
+ "sha256": "0edcc4e076a449779c9bde806345fb113c8d45171b9986ac841021349966be24",
194
+ "language": "MATLAB",
195
+ "lines": 50,
196
+ "truncated": false,
197
+ "block": 3,
198
+ "row": 11646
199
+ },
200
+ {
201
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/Contents.m",
202
+ "sha256": "6bddb57836c06ce629fdaf5433b309d5994a95b2ad3ae8bb299058d20bb97b76",
203
+ "language": "MATLAB",
204
+ "lines": 50,
205
+ "truncated": false,
206
+ "block": 3,
207
+ "row": 11858
208
+ },
209
+ {
210
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/add.m",
211
+ "sha256": "c426da21e8b4e0eba6595f0cd6116fbe6a90484485af4fafb68da29e117ec313",
212
+ "language": "MATLAB",
213
+ "lines": 90,
214
+ "truncated": false,
215
+ "block": 3,
216
+ "row": 13684
217
+ },
218
+ {
219
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/attributes.m",
220
+ "sha256": "a853c431aa16a134139f37f0cf886e4c2d1c1bf040962507b479993143c19645",
221
+ "language": "MATLAB",
222
+ "lines": 111,
223
+ "truncated": false,
224
+ "block": 3,
225
+ "row": 14173
226
+ },
227
+ {
228
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/branch.m",
229
+ "sha256": "204110264dbeba268f37793e3a2753cfd312aca83ccb850113bc27760a138848",
230
+ "language": "MATLAB",
231
+ "lines": 49,
232
+ "truncated": false,
233
+ "block": 3,
234
+ "row": 11162
235
+ },
236
+ {
237
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/char.m",
238
+ "sha256": "d8dc66b1e232f40c367e9291008dbccbb2f4899709298787f4873cbf992991e0",
239
+ "language": "MATLAB",
240
+ "lines": 14,
241
+ "truncated": false,
242
+ "block": 3,
243
+ "row": 8749
244
+ },
245
+ {
246
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/children.m",
247
+ "sha256": "badd94e8350bd491225ccafbe70e52c0d358370e20fdb413cced54a29b591d88",
248
+ "language": "MATLAB",
249
+ "lines": 26,
250
+ "truncated": false,
251
+ "block": 3,
252
+ "row": 9243
253
+ },
254
+ {
255
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/convert.m",
256
+ "sha256": "88da3773e561d39715e23df86923baba31f9d9ddef05179cc01c7336da057b75",
257
+ "language": "MATLAB",
258
+ "lines": 129,
259
+ "truncated": false,
260
+ "block": 3,
261
+ "row": 14476
262
+ },
263
+ {
264
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/copy.m",
265
+ "sha256": "6a3ba2eafec57e75d5cc8c7570aa770712e75a31484a4e34f50afa28429a98ec",
266
+ "language": "MATLAB",
267
+ "lines": 44,
268
+ "truncated": false,
269
+ "block": 3,
270
+ "row": 10924
271
+ },
272
+ {
273
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/delete.m",
274
+ "sha256": "01bbb3c9eb382d82c36ad489f9f758211f98fe0b56ba4ce12e35cf15cc77ac54",
275
+ "language": "MATLAB",
276
+ "lines": 31,
277
+ "truncated": false,
278
+ "block": 3,
279
+ "row": 9932
280
+ },
281
+ {
282
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/display.m",
283
+ "sha256": "637392e47ce6d0ed5cd52dedb0d075405770fe0848a77df09fb46e219ec3c1ac",
284
+ "language": "MATLAB",
285
+ "lines": 19,
286
+ "truncated": false,
287
+ "block": 3,
288
+ "row": 8787
289
+ },
290
+ {
291
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/editor.m",
292
+ "sha256": "f33b276b5061ef68337fbb8c60bf0c1227db2bfab3d23fedba76e3c332a3f351",
293
+ "language": "MATLAB",
294
+ "lines": 396,
295
+ "truncated": false,
296
+ "block": 3,
297
+ "row": 16424
298
+ },
299
+ {
300
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/find.m",
301
+ "sha256": "32350dca7b715a02831eba134280c91d7b416659d0d005b6a00be464874a4fad",
302
+ "language": "MATLAB",
303
+ "lines": 165,
304
+ "truncated": false,
305
+ "block": 3,
306
+ "row": 15003
307
+ },
308
+ {
309
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/flush.m",
310
+ "sha256": "9c0b92aa0e986312e061663d4bcd5e372e28788ea9a9751dae52eb8e21d64b94",
311
+ "language": "MATLAB",
312
+ "lines": 37,
313
+ "truncated": false,
314
+ "block": 3,
315
+ "row": 10438
316
+ },
317
+ {
318
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/get.m",
319
+ "sha256": "03ef9eff603b9c53243e51f47e6d59fd3db2fed30d3b6d959d081b41193e212a",
320
+ "language": "MATLAB",
321
+ "lines": 37,
322
+ "truncated": false,
323
+ "block": 3,
324
+ "row": 10024
325
+ },
326
+ {
327
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/getfilename.m",
328
+ "sha256": "a5e1d99c345cdaeabe8a6e7efd618af154ca399ad3d59c0cd6d532be01210832",
329
+ "language": "MATLAB",
330
+ "lines": 14,
331
+ "truncated": false,
332
+ "block": 3,
333
+ "row": 8602
334
+ },
335
+ {
336
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/isfield.m",
337
+ "sha256": "628541f023f6178f4d5b7d1ce5e2916a1a858da9fb3f43da9cfb407fb24650d6",
338
+ "language": "MATLAB",
339
+ "lines": 20,
340
+ "truncated": false,
341
+ "block": 3,
342
+ "row": 8886
343
+ },
344
+ {
345
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/length.m",
346
+ "sha256": "479328559ea297e8ca0e56554b894d1aa0907627fe5b2982093df63fa8164339",
347
+ "language": "MATLAB",
348
+ "lines": 31,
349
+ "truncated": false,
350
+ "block": 3,
351
+ "row": 9597
352
+ },
353
+ {
354
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/move.m",
355
+ "sha256": "dbf20e1430e04ab8c05b250c1d4a69046ea35e568ecf0ec7f57fd9dbd2997c63",
356
+ "language": "MATLAB",
357
+ "lines": 16,
358
+ "truncated": false,
359
+ "block": 3,
360
+ "row": 8981
361
+ },
362
+ {
363
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/parent.m",
364
+ "sha256": "3e5db448eae8a66edf6f06edd42e334d7a6a0cfa7b9542728a079b778973c85d",
365
+ "language": "MATLAB",
366
+ "lines": 14,
367
+ "truncated": false,
368
+ "block": 3,
369
+ "row": 8579
370
+ },
371
+ {
372
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/private/compile_mex.sh",
373
+ "sha256": "716a0d66b7aa40e122d32da91a0fc6a01cc276050d51cc905f4f50652ce3cd6f",
374
+ "language": "Shell",
375
+ "lines": 41,
376
+ "truncated": false,
377
+ "block": 4,
378
+ "row": 1626
379
+ },
380
+ {
381
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/private/struct2xml.m",
382
+ "sha256": "964637525958bc5b46b119ab375cad3fceba59ccbef9eee90529d5a52927da7e",
383
+ "language": "MATLAB",
384
+ "lines": 91,
385
+ "truncated": false,
386
+ "block": 3,
387
+ "row": 13122
388
+ },
389
+ {
390
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/private/xml_findstr.c",
391
+ "sha256": "c4c5e9a86bad061e8b7f98f2a2e857f098b8ac4f200ebe0dadf1b07c7524f779",
392
+ "language": "C",
393
+ "lines": 111,
394
+ "truncated": false,
395
+ "block": 3,
396
+ "row": 93
397
+ },
398
+ {
399
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/private/xml_findstr.m",
400
+ "sha256": "4e34be8ed51e9c6681f3b65df0eba62b442d41e05566471bc7b5cd46d59ef439",
401
+ "language": "MATLAB",
402
+ "lines": 30,
403
+ "truncated": false,
404
+ "block": 3,
405
+ "row": 10348
406
+ },
407
+ {
408
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/private/xml_parser.m",
409
+ "sha256": "b7c7ff82b66e15ed0702d907adff605a3db4b98c7d99921b0063d6aa57663ced",
410
+ "language": "MATLAB",
411
+ "lines": 411,
412
+ "truncated": false,
413
+ "block": 3,
414
+ "row": 16656
415
+ },
416
+ {
417
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/root.m",
418
+ "sha256": "b99b96a7ab6814e83df20be37e7dc04b6b6b69e29ed1e804009a20fab38568ab",
419
+ "language": "MATLAB",
420
+ "lines": 31,
421
+ "truncated": false,
422
+ "block": 3,
423
+ "row": 9976
424
+ },
425
+ {
426
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/save.m",
427
+ "sha256": "dcf34080a9cb449560370e6fd6dcf8e00b40189b81d1fcea4992d04732f46c0d",
428
+ "language": "MATLAB",
429
+ "lines": 129,
430
+ "truncated": false,
431
+ "block": 3,
432
+ "row": 14694
433
+ },
434
+ {
435
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/save_string.m",
436
+ "sha256": "9d4e036597fec45031de1edc9eee088eac41f063fa037beb80aafa286d198caa",
437
+ "language": "MATLAB",
438
+ "lines": 100,
439
+ "truncated": false,
440
+ "block": 3,
441
+ "row": 14234
442
+ },
443
+ {
444
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/set.m",
445
+ "sha256": "ed74dfda48b5b264ac50436892a469604e39ce520f228ec57cfccf9718f504bb",
446
+ "language": "MATLAB",
447
+ "lines": 21,
448
+ "truncated": false,
449
+ "block": 3,
450
+ "row": 9370
451
+ },
452
+ {
453
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/setfilename.m",
454
+ "sha256": "952ae6f12b7c0a57cf712c110a8ca620eb0ad0320cf6db30acdca5c5a8b77a4e",
455
+ "language": "MATLAB",
456
+ "lines": 13,
457
+ "truncated": false,
458
+ "block": 3,
459
+ "row": 8527
460
+ },
461
+ {
462
+ "path": "functions_matlab/cifti-matlab-master/@xmltree/xmltree.m",
463
+ "sha256": "86d0be3e701c1c29c55423f21301c8df067fd851a3b079f723caef69e643f3f8",
464
+ "language": "MATLAB",
465
+ "lines": 62,
466
+ "truncated": false,
467
+ "block": 3,
468
+ "row": 11882
469
+ },
470
+ {
471
+ "path": "functions_matlab/cifti-matlab-master/cifti_diminfo_dense_get_structures.m",
472
+ "sha256": "5bf6003ba311dc63843571525c803243f6f266fe3e72ac3bcfa3a0bc432fcb94",
473
+ "language": "MATLAB",
474
+ "lines": 21,
475
+ "truncated": false,
476
+ "block": 3,
477
+ "row": 9917
478
+ },
479
+ {
480
+ "path": "functions_matlab/cifti-matlab-master/cifti_diminfo_dense_get_surface_info.m",
481
+ "sha256": "67a4d1a429a50ad77497b55393167ecb89cf2ea938a55ced35ceaa40ea7abf24",
482
+ "language": "MATLAB",
483
+ "lines": 21,
484
+ "truncated": false,
485
+ "block": 3,
486
+ "row": 10574
487
+ },
488
+ {
489
+ "path": "functions_matlab/cifti-matlab-master/cifti_diminfo_dense_get_volume_all_info.m",
490
+ "sha256": "7360b1cb8b99926e740d1c2a3a061d2d788b62b630e7f473766fdc2d27eb47cc",
491
+ "language": "MATLAB",
492
+ "lines": 52,
493
+ "truncated": false,
494
+ "block": 3,
495
+ "row": 13056
496
+ },
497
+ {
498
+ "path": "functions_matlab/cifti-matlab-master/cifti_diminfo_dense_get_volume_structure_info.m",
499
+ "sha256": "5bd95abcccb0de49754525d5cf7745cceeebe4826e8659962cb68be37edacf50",
500
+ "language": "MATLAB",
501
+ "lines": 44,
502
+ "truncated": false,
503
+ "block": 3,
504
+ "row": 12871
505
+ },
506
+ {
507
+ "path": "functions_matlab/cifti-matlab-master/cifti_diminfo_make_scalars.m",
508
+ "sha256": "174a7a27708c4962c36e197860aceb6fff0f6ae597f047e2288935dbb5dca26d",
509
+ "language": "MATLAB",
510
+ "lines": 47,
511
+ "truncated": false,
512
+ "block": 3,
513
+ "row": 11912
514
+ },
515
+ {
516
+ "path": "functions_matlab/cifti-matlab-master/cifti_diminfo_make_series.m",
517
+ "sha256": "c93a0b98ab916e7c504dc7d2d9be98cb88bd25428113789a5d4e35ead03f913a",
518
+ "language": "MATLAB",
519
+ "lines": 30,
520
+ "truncated": false,
521
+ "block": 3,
522
+ "row": 10011
523
+ },
524
+ {
525
+ "path": "functions_matlab/cifti-matlab-master/cifti_metadata_get.m",
526
+ "sha256": "95f3268b5615e4935fdbd8792ca9e2177fedf1c94a10e8fee22f91941f9b1aac",
527
+ "language": "MATLAB",
528
+ "lines": 14,
529
+ "truncated": false,
530
+ "block": 3,
531
+ "row": 8913
532
+ },
533
+ {
534
+ "path": "functions_matlab/cifti-matlab-master/cifti_metadata_remove.m",
535
+ "sha256": "09632b8d7d093c4fbc1d0d4fd189c19b42febabe45a7decb5cbeedd5f5fa9463",
536
+ "language": "MATLAB",
537
+ "lines": 14,
538
+ "truncated": false,
539
+ "block": 3,
540
+ "row": 8868
541
+ },
542
+ {
543
+ "path": "functions_matlab/cifti-matlab-master/cifti_metadata_set.m",
544
+ "sha256": "9e16a65e13eef525b2477ee1e4d5b3542ff5d1d8d67341a05d1855cc67c1b480",
545
+ "language": "MATLAB",
546
+ "lines": 19,
547
+ "truncated": false,
548
+ "block": 3,
549
+ "row": 9354
550
+ },
551
+ {
552
+ "path": "functions_matlab/cifti-matlab-master/cifti_read.m",
553
+ "sha256": "850defed1f316ec15f535f297fc24e8361940509475ae710be89392d3b8d3003",
554
+ "language": "MATLAB",
555
+ "lines": 160,
556
+ "truncated": false,
557
+ "block": 3,
558
+ "row": 15703
559
+ },
560
+ {
561
+ "path": "functions_matlab/cifti-matlab-master/cifti_struct_create_from_template.m",
562
+ "sha256": "515489e8b2d08889c83024cf00260a596ff0461ae38224751b5995244d401222",
563
+ "language": "MATLAB",
564
+ "lines": 110,
565
+ "truncated": false,
566
+ "block": 3,
567
+ "row": 14718
568
+ },
569
+ {
570
+ "path": "functions_matlab/cifti-matlab-master/cifti_struct_create_sdseries.m",
571
+ "sha256": "83ea7a325041852c7a5f2f306deb7699d1513b4865ff359abbe4fea5da0d21f1",
572
+ "language": "MATLAB",
573
+ "lines": 25,
574
+ "truncated": false,
575
+ "block": 3,
576
+ "row": 10483
577
+ },
578
+ {
579
+ "path": "functions_matlab/cifti-matlab-master/cifti_struct_dense_extract_surface_data.m",
580
+ "sha256": "64edfb4e238a78267efa23933bc29217a0ecfec9dd3d4e1cb2016d934bdc3344",
581
+ "language": "MATLAB",
582
+ "lines": 40,
583
+ "truncated": false,
584
+ "block": 3,
585
+ "row": 11780
586
+ },
587
+ {
588
+ "path": "functions_matlab/cifti-matlab-master/cifti_struct_dense_extract_volume_all_data.m",
589
+ "sha256": "a1f7388c28af80668bc51aea14ad3313df67f682c9e8ebbcf3c163dab823f481",
590
+ "language": "MATLAB",
591
+ "lines": 59,
592
+ "truncated": false,
593
+ "block": 3,
594
+ "row": 12761
595
+ },
596
+ {
597
+ "path": "functions_matlab/cifti-matlab-master/cifti_struct_dense_extract_volume_structure_data.m",
598
+ "sha256": "f8bc3da3ff65ea25b3b612fb8c87369adbc6a1b0190d26c889be79073dad8e8f",
599
+ "language": "MATLAB",
600
+ "lines": 59,
601
+ "truncated": false,
602
+ "block": 3,
603
+ "row": 12822
604
+ },
605
+ {
606
+ "path": "functions_matlab/cifti-matlab-master/cifti_struct_dense_replace_surface_data.m",
607
+ "sha256": "55c628c76b48ce0e6a623fe4274592cd1988fe99ed28598fe0d29d38910e739c",
608
+ "language": "MATLAB",
609
+ "lines": 46,
610
+ "truncated": false,
611
+ "block": 3,
612
+ "row": 12112
613
+ },
614
+ {
615
+ "path": "functions_matlab/cifti-matlab-master/cifti_struct_dense_replace_volume_all_data.m",
616
+ "sha256": "49db9de9ded6ee4b057e20a6f7d46ed04b72a399cbed6f824ce79c3372ad779e",
617
+ "language": "MATLAB",
618
+ "lines": 64,
619
+ "truncated": false,
620
+ "block": 3,
621
+ "row": 12889
622
+ },
623
+ {
624
+ "path": "functions_matlab/cifti-matlab-master/cifti_struct_dense_replace_volume_structure_data.m",
625
+ "sha256": "8d21c19be14b2f0c2f557e26b4ddcf7ff95cc9d3ce17216380f883d3fd0505cd",
626
+ "language": "MATLAB",
627
+ "lines": 64,
628
+ "truncated": false,
629
+ "block": 3,
630
+ "row": 12968
631
+ },
632
+ {
633
+ "path": "functions_matlab/cifti-matlab-master/cifti_vox2ind.m",
634
+ "sha256": "0afe478aaf392582b2e71782e60bce62db3f3b057a80cc3c258eef1f016a7afb",
635
+ "language": "MATLAB",
636
+ "lines": 17,
637
+ "truncated": false,
638
+ "block": 3,
639
+ "row": 9600
640
+ },
641
+ {
642
+ "path": "functions_matlab/cifti-matlab-master/cifti_write.m",
643
+ "sha256": "fd4ddf4d95fe170b4886c24026d87cc788fe6dd9de486193172822327be722ad",
644
+ "language": "MATLAB",
645
+ "lines": 206,
646
+ "truncated": false,
647
+ "block": 3,
648
+ "row": 16319
649
+ },
650
+ {
651
+ "path": "functions_matlab/cifti-matlab-master/cifti_write_from_template.m",
652
+ "sha256": "94c2ea4f5c9e1ea84dca8d5f491f2ac1bcf8bdb5303eb115acbb467e528e348d",
653
+ "language": "MATLAB",
654
+ "lines": 38,
655
+ "truncated": false,
656
+ "block": 3,
657
+ "row": 12588
658
+ },
659
+ {
660
+ "path": "functions_matlab/cifti-matlab-master/cifti_write_sdseries.m",
661
+ "sha256": "8827bc755bb021be263407915b73cf616637f28f4a4f02fb739480c38323df11",
662
+ "language": "MATLAB",
663
+ "lines": 18,
664
+ "truncated": false,
665
+ "block": 3,
666
+ "row": 10497
667
+ },
668
+ {
669
+ "path": "functions_matlab/cifti-matlab-master/ciftiopen.m",
670
+ "sha256": "eb30972aa773310579cc8eed101dbe3a63dd94f1d95b113851a0638f841241d1",
671
+ "language": "MATLAB",
672
+ "lines": 11,
673
+ "truncated": false,
674
+ "block": 3,
675
+ "row": 9065
676
+ },
677
+ {
678
+ "path": "functions_matlab/cifti-matlab-master/ciftisave.m",
679
+ "sha256": "d43f9f4119b4a6f98861bf8edc56e6cfaabd345fafe9910992a78b3feecd7753",
680
+ "language": "MATLAB",
681
+ "lines": 22,
682
+ "truncated": false,
683
+ "block": 3,
684
+ "row": 9822
685
+ },
686
+ {
687
+ "path": "functions_matlab/cifti-matlab-master/ciftisavereset.m",
688
+ "sha256": "0e1b5a4d848e99144b122c72b23cf4e7477808458b0a4e5984a19738ad212bc8",
689
+ "language": "MATLAB",
690
+ "lines": 28,
691
+ "truncated": false,
692
+ "block": 3,
693
+ "row": 11462
694
+ },
695
+ {
696
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@gifti/Contents.m",
697
+ "sha256": "7e21d592f5eaa077572ebf5cc1156d05711399ae8405997ebe20c5ad8cb00bc1",
698
+ "language": "MATLAB",
699
+ "lines": 39,
700
+ "truncated": false,
701
+ "block": 3,
702
+ "row": 11385
703
+ },
704
+ {
705
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@gifti/display.m",
706
+ "sha256": "7448693504121606736ae4c679df9a79e48f35125ce16abd94c4d5dc4234694c",
707
+ "language": "MATLAB",
708
+ "lines": 25,
709
+ "truncated": false,
710
+ "block": 3,
711
+ "row": 9396
712
+ },
713
+ {
714
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@gifti/export.m",
715
+ "sha256": "1e1c66340c5efc857113f3ebc8a7e7879b4aa99457a6afc7c479429330b23dbe",
716
+ "language": "MATLAB",
717
+ "lines": 53,
718
+ "truncated": false,
719
+ "block": 3,
720
+ "row": 11739
721
+ },
722
+ {
723
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@gifti/fieldnames.m",
724
+ "sha256": "979fef23e1b8136181d177e9240a01a05a8a69fb229be027a4926786e3bf6aca",
725
+ "language": "MATLAB",
726
+ "lines": 16,
727
+ "truncated": false,
728
+ "block": 3,
729
+ "row": 9106
730
+ },
731
+ {
732
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@gifti/gifti.m",
733
+ "sha256": "a7e30cdc9679849a409f9b09b2636d32c483a948c012e17cdd0ec054fe26b1c2",
734
+ "language": "MATLAB",
735
+ "lines": 111,
736
+ "truncated": false,
737
+ "block": 3,
738
+ "row": 14048
739
+ },
740
+ {
741
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@gifti/isfield.m",
742
+ "sha256": "4e67933a24c1355e53f9bd08fad5d18c0c4e1ce4087d83a2a250984b7def3968",
743
+ "language": "MATLAB",
744
+ "lines": 13,
745
+ "truncated": false,
746
+ "block": 3,
747
+ "row": 8849
748
+ },
749
+ {
750
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@gifti/plot.m",
751
+ "sha256": "daca35a35f9bbda93ab7de0b7ec236b1527ea6b7041a27d6922e0e8da03b0f3d",
752
+ "language": "MATLAB",
753
+ "lines": 67,
754
+ "truncated": false,
755
+ "block": 3,
756
+ "row": 11076
757
+ },
758
+ {
759
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@gifti/private/base64decode.m",
760
+ "sha256": "775bd8667cb258c8088a09bfbc45f2a11800c578d5c5afcbac7cd19a7a66d2ac",
761
+ "language": "MATLAB",
762
+ "lines": 81,
763
+ "truncated": false,
764
+ "block": 3,
765
+ "row": 13315
766
+ },
767
+ {
768
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@gifti/private/base64encode.m",
769
+ "sha256": "abea870acd7d06ffce225456ea2b4111c409412d7921e6cf6c0a57366a3ac24c",
770
+ "language": "MATLAB",
771
+ "lines": 157,
772
+ "truncated": false,
773
+ "block": 3,
774
+ "row": 14859
775
+ },
776
+ {
777
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@gifti/private/getdict.m",
778
+ "sha256": "e83600bdc8fc11167417aabf8394cba4a6ba76aa6af5bb3aadb21473dd15b269",
779
+ "language": "MATLAB",
780
+ "lines": 26,
781
+ "truncated": false,
782
+ "block": 3,
783
+ "row": 9539
784
+ },
785
+ {
786
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@gifti/private/isintent.m",
787
+ "sha256": "00197b7f1d15e94dd0f3b6fb836c18226bf2be2e8e9562454e289b66195b6d91",
788
+ "language": "MATLAB",
789
+ "lines": 116,
790
+ "truncated": false,
791
+ "block": 3,
792
+ "row": 12990
793
+ },
794
+ {
795
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@gifti/private/miniz.c",
796
+ "sha256": "02b13ea8204812839d04d4bccb83f4c6662e47943892752ca32901fd28032f3b",
797
+ "language": "C",
798
+ "lines": 4214,
799
+ "truncated": true,
800
+ "block": 3,
801
+ "row": 341
802
+ },
803
+ {
804
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@gifti/private/mvtk_write.m",
805
+ "sha256": "55b57dbba1aa7e9894dd5b13ed8c21f21cf9661fae5308fffb07d1226fbd850b",
806
+ "language": "MATLAB",
807
+ "lines": 564,
808
+ "truncated": false,
809
+ "block": 3,
810
+ "row": 16800
811
+ },
812
+ {
813
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@gifti/private/read_freesurfer_file.m",
814
+ "sha256": "d5ee7fcbcc0e61a54305106e62e919a49c7e14c436ce9f6efd667dca706ed0e7",
815
+ "language": "MATLAB",
816
+ "lines": 25,
817
+ "truncated": false,
818
+ "block": 3,
819
+ "row": 9728
820
+ },
821
+ {
822
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@gifti/private/read_gifti_file_standalone.m",
823
+ "sha256": "bda4156d4a8647aafc2da32cf1846356a517cb3172cdad8b9df1336dc38c8a17",
824
+ "language": "MATLAB",
825
+ "lines": 236,
826
+ "truncated": false,
827
+ "block": 3,
828
+ "row": 15788
829
+ },
830
+ {
831
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@gifti/private/xml_parser.m",
832
+ "sha256": "9e4567af8a929f57945722f7fe81ee4603193c36350fc6631dec9ebde1157e59",
833
+ "language": "MATLAB",
834
+ "lines": 429,
835
+ "truncated": false,
836
+ "block": 3,
837
+ "row": 16717
838
+ },
839
+ {
840
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@gifti/private/zstream.c",
841
+ "sha256": "83c0f42e27b13cfa85d49c420db7e0c3e4f066d4fd5d2ec52f8410f94f2eebd4",
842
+ "language": "C",
843
+ "lines": 77,
844
+ "truncated": false,
845
+ "block": 3,
846
+ "row": 46
847
+ },
848
+ {
849
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@gifti/private/zstream.m",
850
+ "sha256": "88bef8f8a88da6865d230d51a8d510668e9bace60990640c61c832aaf27d5274",
851
+ "language": "MATLAB",
852
+ "lines": 49,
853
+ "truncated": false,
854
+ "block": 3,
855
+ "row": 11600
856
+ },
857
+ {
858
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@gifti/save.m",
859
+ "sha256": "f329781cc90eb10bdd33eb9503649e42e719b2adc9d931cf41a33fdb46012ad7",
860
+ "language": "MATLAB",
861
+ "lines": 253,
862
+ "truncated": false,
863
+ "block": 3,
864
+ "row": 16101
865
+ },
866
+ {
867
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@gifti/saveas.m",
868
+ "sha256": "dfd02efc2f6a5808819b2ba67ed0df8e86254caaea653199e1a52afb84419b17",
869
+ "language": "MATLAB",
870
+ "lines": 365,
871
+ "truncated": false,
872
+ "block": 3,
873
+ "row": 16507
874
+ },
875
+ {
876
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@gifti/struct.m",
877
+ "sha256": "c9b96ba679e37a1d0b24cbc58c26a8e593a4a3deaddf7b0fc8791a02b8878058",
878
+ "language": "MATLAB",
879
+ "lines": 18,
880
+ "truncated": false,
881
+ "block": 3,
882
+ "row": 9226
883
+ },
884
+ {
885
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@gifti/subsasgn.m",
886
+ "sha256": "0094be4de8d5057012631f314bee8c4100f63f482ca545db49fa74a8147b24e9",
887
+ "language": "MATLAB",
888
+ "lines": 139,
889
+ "truncated": false,
890
+ "block": 3,
891
+ "row": 15219
892
+ },
893
+ {
894
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@gifti/subsref.m",
895
+ "sha256": "2e60d0f063b7c39b059534674852149bff08aef075637e9798ebe677551bff5e",
896
+ "language": "MATLAB",
897
+ "lines": 60,
898
+ "truncated": false,
899
+ "block": 3,
900
+ "row": 12101
901
+ },
902
+ {
903
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/Contents.m",
904
+ "sha256": "26b54a3d8304b4711912123f7f95ae3dd16d9295c1818a489e4f005faf9d46f4",
905
+ "language": "MATLAB",
906
+ "lines": 54,
907
+ "truncated": false,
908
+ "block": 3,
909
+ "row": 11826
910
+ },
911
+ {
912
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/add.m",
913
+ "sha256": "04a105c7ffb981ce322544c7dfa48c15ca9710fcc9586982b9a0ce164df5d5a3",
914
+ "language": "MATLAB",
915
+ "lines": 94,
916
+ "truncated": false,
917
+ "block": 3,
918
+ "row": 13909
919
+ },
920
+ {
921
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/attributes.m",
922
+ "sha256": "54c7e3b35d628a5ae648d6b3b1342fa39c943504998897daff4ba158e702507b",
923
+ "language": "MATLAB",
924
+ "lines": 117,
925
+ "truncated": false,
926
+ "block": 3,
927
+ "row": 14374
928
+ },
929
+ {
930
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/branch.m",
931
+ "sha256": "59c70f99fecfad24f73ea577d3106e8ef65523c3fc5457a8fcee2279c71e30be",
932
+ "language": "MATLAB",
933
+ "lines": 55,
934
+ "truncated": false,
935
+ "block": 3,
936
+ "row": 11700
937
+ },
938
+ {
939
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/char.m",
940
+ "sha256": "a49f05150d70208f5e5f08e675ada6f44eda0a597b32ecb5b7272d2436bfbd43",
941
+ "language": "MATLAB",
942
+ "lines": 18,
943
+ "truncated": false,
944
+ "block": 3,
945
+ "row": 9342
946
+ },
947
+ {
948
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/children.m",
949
+ "sha256": "25a86df55eaa17f34511380dc7e9562ef5b9ac6fccaf6e5f150c6d4aee986b2e",
950
+ "language": "MATLAB",
951
+ "lines": 31,
952
+ "truncated": false,
953
+ "block": 3,
954
+ "row": 9908
955
+ },
956
+ {
957
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/convert.m",
958
+ "sha256": "3c9cca0e6ea2354d9b683583fbab9cc04b84c2af072e753c521d5cf92e1ae102",
959
+ "language": "MATLAB",
960
+ "lines": 149,
961
+ "truncated": false,
962
+ "block": 3,
963
+ "row": 15068
964
+ },
965
+ {
966
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/copy.m",
967
+ "sha256": "2aa06511422792f9e8dce718f7f3fb792d50766dc38a30a1cda6d03aad249845",
968
+ "language": "MATLAB",
969
+ "lines": 50,
970
+ "truncated": false,
971
+ "block": 3,
972
+ "row": 11458
973
+ },
974
+ {
975
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/delete.m",
976
+ "sha256": "710190ad0672ff834475955c26383cdf19162acb1aea571c9985b20c437102e8",
977
+ "language": "MATLAB",
978
+ "lines": 36,
979
+ "truncated": false,
980
+ "block": 3,
981
+ "row": 10570
982
+ },
983
+ {
984
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/display.m",
985
+ "sha256": "05524df0c48d00db7d9878056ae9fd6ac43e92c2a37f3b4175cf819fa7bf610b",
986
+ "language": "MATLAB",
987
+ "lines": 22,
988
+ "truncated": false,
989
+ "block": 3,
990
+ "row": 9352
991
+ },
992
+ {
993
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/editor.m",
994
+ "sha256": "38ff5ecca84dbdc2f8175803bd10a05f056963087c9bd9313373bf071d3e43d9",
995
+ "language": "MATLAB",
996
+ "lines": 401,
997
+ "truncated": false,
998
+ "block": 3,
999
+ "row": 16433
1000
+ },
1001
+ {
1002
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/find.m",
1003
+ "sha256": "2334babbcc939d81053d6ace0a77352ad467bd5389418ea379af52d680eab3c3",
1004
+ "language": "MATLAB",
1005
+ "lines": 174,
1006
+ "truncated": false,
1007
+ "block": 3,
1008
+ "row": 15178
1009
+ },
1010
+ {
1011
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/flush.m",
1012
+ "sha256": "ce8800a19f7e56774921305335c7f24c6a0e96386ad171ab4aa3b9b03a4dce57",
1013
+ "language": "MATLAB",
1014
+ "lines": 43,
1015
+ "truncated": false,
1016
+ "block": 3,
1017
+ "row": 11056
1018
+ },
1019
+ {
1020
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/get.m",
1021
+ "sha256": "dcc77a37ffb7be64b356187758a25c469bb5f9a3791a6f9411d3f1b304bfe12b",
1022
+ "language": "MATLAB",
1023
+ "lines": 43,
1024
+ "truncated": false,
1025
+ "block": 3,
1026
+ "row": 10655
1027
+ },
1028
+ {
1029
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/getfilename.m",
1030
+ "sha256": "53534e3d3c221d2eef63bbe57b6701261c78547f58a2599a6a6c98340974c115",
1031
+ "language": "MATLAB",
1032
+ "lines": 17,
1033
+ "truncated": false,
1034
+ "block": 3,
1035
+ "row": 9175
1036
+ },
1037
+ {
1038
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/isfield.m",
1039
+ "sha256": "6cfcaf508fd2e6925bd09d11542820b2b9e4272f97a24809fe1ceff5d679fe42",
1040
+ "language": "MATLAB",
1041
+ "lines": 26,
1042
+ "truncated": false,
1043
+ "block": 3,
1044
+ "row": 9562
1045
+ },
1046
+ {
1047
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/length.m",
1048
+ "sha256": "06ea73968fc2505db34bb38636cc8849b81dffd1b5dcd6e226b03d1fa4516ef3",
1049
+ "language": "MATLAB",
1050
+ "lines": 37,
1051
+ "truncated": false,
1052
+ "block": 3,
1053
+ "row": 10260
1054
+ },
1055
+ {
1056
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/move.m",
1057
+ "sha256": "83cf6e5f447fcb463313b06de38387eb20ed5230b2e571cb75de7d0f718575cd",
1058
+ "language": "MATLAB",
1059
+ "lines": 22,
1060
+ "truncated": false,
1061
+ "block": 3,
1062
+ "row": 9653
1063
+ },
1064
+ {
1065
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/parent.m",
1066
+ "sha256": "87f7fdb70ad2976aafc5c3a733e6ef1b3cb36cc6fb57b08c78c860d524c13cfd",
1067
+ "language": "MATLAB",
1068
+ "lines": 17,
1069
+ "truncated": false,
1070
+ "block": 3,
1071
+ "row": 9135
1072
+ },
1073
+ {
1074
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/private/compile_mex.sh",
1075
+ "sha256": "bc54b0847b2c2d5ddebd6ce5849834aaaa208d4dac8bbda0f64cac307c3120ec",
1076
+ "language": "Shell",
1077
+ "lines": 41,
1078
+ "truncated": false,
1079
+ "block": 4,
1080
+ "row": 1627
1081
+ },
1082
+ {
1083
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/private/xml_findstr.c",
1084
+ "sha256": "37a54bc453a7aea80e0e409db004804c4fdd59bc8d42ce99df7ed7974f2d0e27",
1085
+ "language": "C",
1086
+ "lines": 110,
1087
+ "truncated": false,
1088
+ "block": 3,
1089
+ "row": 95
1090
+ },
1091
+ {
1092
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/private/xml_findstr.m",
1093
+ "sha256": "10c60ccd76431b7ea66ec22e9b452f2b3f8621682d38f48181dc9941c670d7ad",
1094
+ "language": "MATLAB",
1095
+ "lines": 54,
1096
+ "truncated": false,
1097
+ "block": 3,
1098
+ "row": 11933
1099
+ },
1100
+ {
1101
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/private/xml_parser.m",
1102
+ "sha256": "6764850a75f5265cea4ab25fbc1ec705a93c666f928ccbf96960081aed92b77c",
1103
+ "language": "MATLAB",
1104
+ "lines": 421,
1105
+ "truncated": false,
1106
+ "block": 3,
1107
+ "row": 16700
1108
+ },
1109
+ {
1110
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/root.m",
1111
+ "sha256": "ea03ea23278757a73c359a67f7a762e5c4b0e348f969749b436aa19a673a4c7a",
1112
+ "language": "MATLAB",
1113
+ "lines": 36,
1114
+ "truncated": false,
1115
+ "block": 3,
1116
+ "row": 10566
1117
+ },
1118
+ {
1119
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/save.m",
1120
+ "sha256": "34ba92a01a99d33c41b2d3381dedbd618a5a02ebfaaca17e8b0172ea8db104ab",
1121
+ "language": "MATLAB",
1122
+ "lines": 135,
1123
+ "truncated": false,
1124
+ "block": 3,
1125
+ "row": 14827
1126
+ },
1127
+ {
1128
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/set.m",
1129
+ "sha256": "8c6f137d61f97f00d4e9648e16ec0a7de605776a573c8910613bac4522a79743",
1130
+ "language": "MATLAB",
1131
+ "lines": 27,
1132
+ "truncated": false,
1133
+ "block": 3,
1134
+ "row": 10037
1135
+ },
1136
+ {
1137
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/setfilename.m",
1138
+ "sha256": "a2607e36e04171056d4dfd9e02c55a19a5979ed373a94c6726bfc14810e9d27e",
1139
+ "language": "MATLAB",
1140
+ "lines": 16,
1141
+ "truncated": false,
1142
+ "block": 3,
1143
+ "row": 9105
1144
+ },
1145
+ {
1146
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/@xmltree/xmltree.m",
1147
+ "sha256": "b0b7c78e0024edc8f90dd54e6476421732f80e8dafae3b497651f89692e06f34",
1148
+ "language": "MATLAB",
1149
+ "lines": 61,
1150
+ "truncated": false,
1151
+ "block": 3,
1152
+ "row": 12618
1153
+ },
1154
+ {
1155
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/ft_read_cifti.m",
1156
+ "sha256": "cbff4fe5964a9820b2765818f6ec9fbad5e7e9b5e7150690f35b96b6909df7ba",
1157
+ "language": "MATLAB",
1158
+ "lines": 1016,
1159
+ "truncated": false,
1160
+ "block": 3,
1161
+ "row": 17135
1162
+ },
1163
+ {
1164
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/ft_write_cifti.m",
1165
+ "sha256": "95f3706eb1e1a19799676477a6acee71a26da0f13411b7363ad7eb20fced2d7c",
1166
+ "language": "MATLAB",
1167
+ "lines": 849,
1168
+ "truncated": false,
1169
+ "block": 3,
1170
+ "row": 17078
1171
+ },
1172
+ {
1173
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/package.sh",
1174
+ "sha256": "b45c63e6cf04818da243737bf1b2854fa53fc4a08a5db28a82237027912b3804",
1175
+ "language": "Shell",
1176
+ "lines": 126,
1177
+ "truncated": false,
1178
+ "block": 4,
1179
+ "row": 2220
1180
+ },
1181
+ {
1182
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/copyfields.m",
1183
+ "sha256": "261be14a5b8ea3586ebafe231ef717b2ef4f23dcd267ec4f2911c7fce03ef3d1",
1184
+ "language": "MATLAB",
1185
+ "lines": 52,
1186
+ "truncated": false,
1187
+ "block": 3,
1188
+ "row": 11455
1189
+ },
1190
+ {
1191
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/fetch_url.m",
1192
+ "sha256": "4c632e8216cf6659d21df68e8182878ca883e6d2de9e09bc6f877fb9679ce839",
1193
+ "language": "MATLAB",
1194
+ "lines": 49,
1195
+ "truncated": false,
1196
+ "block": 3,
1197
+ "row": 11830
1198
+ },
1199
+ {
1200
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/filetype_check_extension.m",
1201
+ "sha256": "21c9d17a208204a1957d22782ca4d077dc802b227b88d038593045e78ed4a412",
1202
+ "language": "MATLAB",
1203
+ "lines": 62,
1204
+ "truncated": false,
1205
+ "block": 3,
1206
+ "row": 12218
1207
+ },
1208
+ {
1209
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/filetype_check_header.m",
1210
+ "sha256": "c5fa853c8bb4bf6df1b369ebb4f5d7256b1bc2adc8e1988709e8b072364a0e9d",
1211
+ "language": "MATLAB",
1212
+ "lines": 99,
1213
+ "truncated": false,
1214
+ "block": 3,
1215
+ "row": 13362
1216
+ },
1217
+ {
1218
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/filetype_check_uri.m",
1219
+ "sha256": "e06fa2e5dda67063a2c6d7869b77de5585773d8b6f8279f0ea67fc4c29361ac7",
1220
+ "language": "MATLAB",
1221
+ "lines": 263,
1222
+ "truncated": false,
1223
+ "block": 3,
1224
+ "row": 16013
1225
+ },
1226
+ {
1227
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/find_outermost_boundary.m",
1228
+ "sha256": "d5b3f5123d48d702139501638e4b141e9ad81129776386bff98ef52f5d562fd5",
1229
+ "language": "MATLAB",
1230
+ "lines": 52,
1231
+ "truncated": false,
1232
+ "block": 3,
1233
+ "row": 11768
1234
+ },
1235
+ {
1236
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/fixname.m",
1237
+ "sha256": "899b32c5c7aff18815c377cccb0825029ac7ce740ccf642e28506c2cdd1e16ed",
1238
+ "language": "MATLAB",
1239
+ "lines": 51,
1240
+ "truncated": false,
1241
+ "block": 3,
1242
+ "row": 12064
1243
+ },
1244
+ {
1245
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/fixpos.m",
1246
+ "sha256": "3ef456aa9fe8223b9ba752bee67c815dadf1240a04eab3984fd40f672daaff20",
1247
+ "language": "MATLAB",
1248
+ "lines": 76,
1249
+ "truncated": false,
1250
+ "block": 3,
1251
+ "row": 12002
1252
+ },
1253
+ {
1254
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/ft_convert_units.m",
1255
+ "sha256": "f40be3617d5fdfa1bd47ce5d532aa5a9d35d3a0cd11846ec79ddc28936ca5670",
1256
+ "language": "MATLAB",
1257
+ "lines": 267,
1258
+ "truncated": false,
1259
+ "block": 3,
1260
+ "row": 16133
1261
+ },
1262
+ {
1263
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/ft_datatype.m",
1264
+ "sha256": "ae2d830188260d9b7a259587a812c51e582e666abf3d28faa82d1efcfa05d3ba",
1265
+ "language": "MATLAB",
1266
+ "lines": 292,
1267
+ "truncated": false,
1268
+ "block": 3,
1269
+ "row": 16170
1270
+ },
1271
+ {
1272
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/ft_datatype_sens.m",
1273
+ "sha256": "87aaecf901995369ce7bad190443f3fd45fc8eac96668e8c6cf00bba0ed69741",
1274
+ "language": "MATLAB",
1275
+ "lines": 454,
1276
+ "truncated": false,
1277
+ "block": 3,
1278
+ "row": 16887
1279
+ },
1280
+ {
1281
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/ft_estimate_units.m",
1282
+ "sha256": "1c06dbcc93c34e0f549255f784ad1d66d0ecc9d0330e3a4a65e586e8d097fab3",
1283
+ "language": "MATLAB",
1284
+ "lines": 59,
1285
+ "truncated": false,
1286
+ "block": 3,
1287
+ "row": 12105
1288
+ },
1289
+ {
1290
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/ft_filetype.m",
1291
+ "sha256": "b03e015758b8d7a1fdb3a24a50796257100f3e4072f32410f4c98a0e53654d97",
1292
+ "language": "MATLAB",
1293
+ "lines": 1431,
1294
+ "truncated": false,
1295
+ "block": 3,
1296
+ "row": 17225
1297
+ },
1298
+ {
1299
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/ft_getopt.m",
1300
+ "sha256": "7d71f501fe405d79a9060696bb95f65fa9bda82fd5433aecaff63f6f32a1eb45",
1301
+ "language": "MATLAB",
1302
+ "lines": 106,
1303
+ "truncated": false,
1304
+ "block": 3,
1305
+ "row": 13723
1306
+ },
1307
+ {
1308
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/ft_hastoolbox.m",
1309
+ "sha256": "ffd50aa9a1a34b27815c7b75d924a42111783ac7a3f2dd8c74aa972c49434633",
1310
+ "language": "MATLAB",
1311
+ "lines": 561,
1312
+ "truncated": false,
1313
+ "block": 3,
1314
+ "row": 17018
1315
+ },
1316
+ {
1317
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/ft_read_header.m",
1318
+ "sha256": "fc6a374462895b39816edfb12ec79a6eae57ab21a3f5c1623e843c4e605485ea",
1319
+ "language": "MATLAB",
1320
+ "lines": 2352,
1321
+ "truncated": false,
1322
+ "block": 3,
1323
+ "row": 17249
1324
+ },
1325
+ {
1326
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/ft_read_headshape.m",
1327
+ "sha256": "7b613852cc0fa9b01a946c3f10fb329cbf0d093b51f3970e799a4505db67549a",
1328
+ "language": "MATLAB",
1329
+ "lines": 1010,
1330
+ "truncated": false,
1331
+ "block": 3,
1332
+ "row": 17114
1333
+ },
1334
+ {
1335
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/ft_read_mri.m",
1336
+ "sha256": "6d07e646176df4befb95c170efa22d5766d3fae900e5b88458652dfe38527115",
1337
+ "language": "MATLAB",
1338
+ "lines": 474,
1339
+ "truncated": false,
1340
+ "block": 3,
1341
+ "row": 16685
1342
+ },
1343
+ {
1344
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/ft_read_sens.m",
1345
+ "sha256": "77f10a3918598cfeeb0a8f7c0e0dcfc6f28df01666baa0cd2f6e05f893602628",
1346
+ "language": "MATLAB",
1347
+ "lines": 378,
1348
+ "truncated": false,
1349
+ "block": 3,
1350
+ "row": 16602
1351
+ },
1352
+ {
1353
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/ft_read_vol.m",
1354
+ "sha256": "2e5aca268a3cbc1faae56a40ecec3027d8e7a508a359dd43f0cd22738fd2c1f5",
1355
+ "language": "MATLAB",
1356
+ "lines": 71,
1357
+ "truncated": false,
1358
+ "block": 3,
1359
+ "row": 12511
1360
+ },
1361
+ {
1362
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/ft_scalingfactor.m",
1363
+ "sha256": "0422c80cfd683b898763ecbfcd91818f061d66a497523890eab2117df4c70508",
1364
+ "language": "MATLAB",
1365
+ "lines": 256,
1366
+ "truncated": false,
1367
+ "block": 3,
1368
+ "row": 16016
1369
+ },
1370
+ {
1371
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/ft_senstype.m",
1372
+ "sha256": "d28b78d73f481bd3f61d80d3cf98bf0dc471d6c876d7b93669ccf8ce6d591a43",
1373
+ "language": "MATLAB",
1374
+ "lines": 457,
1375
+ "truncated": false,
1376
+ "block": 3,
1377
+ "row": 16780
1378
+ },
1379
+ {
1380
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/ft_struct2double.m",
1381
+ "sha256": "c77e6d3cfc1fec4ee0b5885e5cdd5c46c86ab1b5aaacd43787f62027e5f4d437",
1382
+ "language": "MATLAB",
1383
+ "lines": 87,
1384
+ "truncated": false,
1385
+ "block": 3,
1386
+ "row": 13125
1387
+ },
1388
+ {
1389
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/ft_voltype.m",
1390
+ "sha256": "2c765a2c60f362714cc0e78ef370621cd8bad50c7017f47027dbfe1e38610f78",
1391
+ "language": "MATLAB",
1392
+ "lines": 138,
1393
+ "truncated": false,
1394
+ "block": 3,
1395
+ "row": 15081
1396
+ },
1397
+ {
1398
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/ft_warning.m",
1399
+ "sha256": "4aac20c92a8c8958cf46ca32d5ca40beceb7ad5f5f6e6d2ddfe37683f0064358",
1400
+ "language": "MATLAB",
1401
+ "lines": 257,
1402
+ "truncated": false,
1403
+ "block": 3,
1404
+ "row": 15741
1405
+ },
1406
+ {
1407
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/ft_warp_apply.m",
1408
+ "sha256": "6073fde5ff132c65bc5f28f4f7635436728c6c6a2a1bf876fa9cd111f34e97ce",
1409
+ "language": "MATLAB",
1410
+ "lines": 203,
1411
+ "truncated": false,
1412
+ "block": 3,
1413
+ "row": 16537
1414
+ },
1415
+ {
1416
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/ft_write_headshape.m",
1417
+ "sha256": "44c0bd61541a2d5d5a1364b2141eff38672ffcebb6d65c50f7a8b34a2bc3d79f",
1418
+ "language": "MATLAB",
1419
+ "lines": 237,
1420
+ "truncated": false,
1421
+ "block": 3,
1422
+ "row": 15691
1423
+ },
1424
+ {
1425
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/getdimord.m",
1426
+ "sha256": "9857494bef7584787071a19b787c9642acbfde8608d8b71ac5fed78c49d07695",
1427
+ "language": "MATLAB",
1428
+ "lines": 611,
1429
+ "truncated": false,
1430
+ "block": 3,
1431
+ "row": 16864
1432
+ },
1433
+ {
1434
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/getdimsiz.m",
1435
+ "sha256": "10b7c80839d936492bf3e7fb37aceb196ead10cfb698258243511ea0c35aa5ff",
1436
+ "language": "MATLAB",
1437
+ "lines": 70,
1438
+ "truncated": false,
1439
+ "block": 3,
1440
+ "row": 12442
1441
+ },
1442
+ {
1443
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/hasyokogawa.m",
1444
+ "sha256": "8bfe122592f8ebbde2f171af40f1f7a000bd7dc7472503dc439dbd74e91a39b3",
1445
+ "language": "MATLAB",
1446
+ "lines": 104,
1447
+ "truncated": false,
1448
+ "block": 3,
1449
+ "row": 14138
1450
+ },
1451
+ {
1452
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/individual2sn.m",
1453
+ "sha256": "bd8f696690b7e01fe20a2d0086f397e64ded5b28b36d39fa5ab8f863fd2f1fc6",
1454
+ "language": "MATLAB",
1455
+ "lines": 145,
1456
+ "truncated": false,
1457
+ "block": 3,
1458
+ "row": 14739
1459
+ },
1460
+ {
1461
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/inflate_file.m",
1462
+ "sha256": "19be9811fa90ae9886ba92ad373535f48b1a588ef1f58591b801103d23e847d5",
1463
+ "language": "MATLAB",
1464
+ "lines": 84,
1465
+ "truncated": false,
1466
+ "block": 3,
1467
+ "row": 13178
1468
+ },
1469
+ {
1470
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/istrue.m",
1471
+ "sha256": "ad034ef84a70a5572485f40b4baa167bb64bdd1174f6be7c54302f1ced3785ed",
1472
+ "language": "MATLAB",
1473
+ "lines": 42,
1474
+ "truncated": false,
1475
+ "block": 3,
1476
+ "row": 10929
1477
+ },
1478
+ {
1479
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/keepfields.m",
1480
+ "sha256": "1d4a344a8494592f146f830c2baec638055ab5546ee872adaedf006c033d8bb4",
1481
+ "language": "MATLAB",
1482
+ "lines": 44,
1483
+ "truncated": false,
1484
+ "block": 3,
1485
+ "row": 10877
1486
+ },
1487
+ {
1488
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/ndgrid.m",
1489
+ "sha256": "c2c65469160faff9225ea5c176cd3b674c92e421d03158fd1b2a24966c35215d",
1490
+ "language": "MATLAB",
1491
+ "lines": 123,
1492
+ "truncated": false,
1493
+ "block": 3,
1494
+ "row": 14360
1495
+ },
1496
+ {
1497
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/pos2transform.m",
1498
+ "sha256": "2d1b81baf6f9711852f557c0dcaa0a067e8f100ec621808394ae5995054af397",
1499
+ "language": "MATLAB",
1500
+ "lines": 34,
1501
+ "truncated": false,
1502
+ "block": 3,
1503
+ "row": 9690
1504
+ },
1505
+ {
1506
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/read_asa.m",
1507
+ "sha256": "841b700bf7d192b5b824c7d67b1a1964bc3451ebba24ee0d4a150eb53f26b4fc",
1508
+ "language": "MATLAB",
1509
+ "lines": 168,
1510
+ "truncated": false,
1511
+ "block": 3,
1512
+ "row": 14046
1513
+ },
1514
+ {
1515
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/read_besa_sfp.m",
1516
+ "sha256": "4546a24f5f494bc2e1086b39cbddf7c7d41d076cebe1dc0b06a66d1cef55676d",
1517
+ "language": "MATLAB",
1518
+ "lines": 40,
1519
+ "truncated": false,
1520
+ "block": 3,
1521
+ "row": 10119
1522
+ },
1523
+ {
1524
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/read_bti_hs.m",
1525
+ "sha256": "577c3789e2d554aecbe1d773475471014db92329430a3f4891d6e98afc3020e1",
1526
+ "language": "MATLAB",
1527
+ "lines": 56,
1528
+ "truncated": false,
1529
+ "block": 3,
1530
+ "row": 11660
1531
+ },
1532
+ {
1533
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/read_bv_srf.m",
1534
+ "sha256": "bd401a81147ce51a5ad02d7c3bcfe26e8f5c51d2e6bc1521f02ac97d43688a41",
1535
+ "language": "MATLAB",
1536
+ "lines": 107,
1537
+ "truncated": false,
1538
+ "block": 3,
1539
+ "row": 15120
1540
+ },
1541
+ {
1542
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/read_caret_spec.m",
1543
+ "sha256": "ad1c43710d6633d01e7755b24dfafa41746c802f5142bfa349b23ec199fa383e",
1544
+ "language": "MATLAB",
1545
+ "lines": 110,
1546
+ "truncated": false,
1547
+ "block": 3,
1548
+ "row": 12973
1549
+ },
1550
+ {
1551
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/read_ctf_hc.m",
1552
+ "sha256": "a219aed71dc8b9fc391fdbe0002d2974bcfdd971955e4f85c5ebb7a1ffc3948c",
1553
+ "language": "MATLAB",
1554
+ "lines": 190,
1555
+ "truncated": false,
1556
+ "block": 3,
1557
+ "row": 15859
1558
+ },
1559
+ {
1560
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/read_ctf_pos.m",
1561
+ "sha256": "102e6e843b440337f8c265699fff46bfade46c30dcf2355e8286e8ded40ffede",
1562
+ "language": "MATLAB",
1563
+ "lines": 72,
1564
+ "truncated": false,
1565
+ "block": 3,
1566
+ "row": 11681
1567
+ },
1568
+ {
1569
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/read_ctf_shape.m",
1570
+ "sha256": "2491b0a3895ab3fbe525db6841ffccd277e5cf9d409e737fdfd9f69a9240e736",
1571
+ "language": "MATLAB",
1572
+ "lines": 41,
1573
+ "truncated": false,
1574
+ "block": 3,
1575
+ "row": 11004
1576
+ },
1577
+ {
1578
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/read_neuromag_hc.m",
1579
+ "sha256": "c628bbbeeb246b148fc02091b400f3075db10e3213c21ce982e07f8163abfb2e",
1580
+ "language": "MATLAB",
1581
+ "lines": 165,
1582
+ "truncated": false,
1583
+ "block": 3,
1584
+ "row": 15107
1585
+ },
1586
+ {
1587
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/read_nifti2_hdr.m",
1588
+ "sha256": "17abb7496498d29c2b176de8a0478ccaf72785bd7714e6d0dce3f25e1152b37d",
1589
+ "language": "MATLAB",
1590
+ "lines": 110,
1591
+ "truncated": false,
1592
+ "block": 3,
1593
+ "row": 14986
1594
+ },
1595
+ {
1596
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/read_off.m",
1597
+ "sha256": "a80804b280086e85027a6b2109da113f3ce67d2ad4fcb921a0816ec2ad9b3be5",
1598
+ "language": "MATLAB",
1599
+ "lines": 57,
1600
+ "truncated": false,
1601
+ "block": 3,
1602
+ "row": 11289
1603
+ },
1604
+ {
1605
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/read_ply.m",
1606
+ "sha256": "1e7072be5094f062b3a3bf15c0ef185873da1355e40bed7b5a246001c1b37341",
1607
+ "language": "MATLAB",
1608
+ "lines": 211,
1609
+ "truncated": false,
1610
+ "block": 3,
1611
+ "row": 15201
1612
+ },
1613
+ {
1614
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/read_polhemus_fil.m",
1615
+ "sha256": "ac41e41664777d8a4c7489d9914cffe6402a2222c31942e67749e1a332d01cc3",
1616
+ "language": "MATLAB",
1617
+ "lines": 101,
1618
+ "truncated": false,
1619
+ "block": 3,
1620
+ "row": 13598
1621
+ },
1622
+ {
1623
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/read_stl.m",
1624
+ "sha256": "13657461e105b55bcacb4356d6592ab0fce2d93c115fc36549b978bbf0f72c1c",
1625
+ "language": "MATLAB",
1626
+ "lines": 136,
1627
+ "truncated": false,
1628
+ "block": 3,
1629
+ "row": 14488
1630
+ },
1631
+ {
1632
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/read_vtk.m",
1633
+ "sha256": "daef80fffa3dd21b5b14ca522595e31faabcd476905c114eb86c67801e82017f",
1634
+ "language": "MATLAB",
1635
+ "lines": 48,
1636
+ "truncated": false,
1637
+ "block": 3,
1638
+ "row": 9863
1639
+ },
1640
+ {
1641
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/read_yokogawa_header.m",
1642
+ "sha256": "be391fbc4337dc59fd24f61355d9b663fc21c896d180cb5620499dec817f4f61",
1643
+ "language": "MATLAB",
1644
+ "lines": 223,
1645
+ "truncated": false,
1646
+ "block": 3,
1647
+ "row": 15844
1648
+ },
1649
+ {
1650
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/read_yokogawa_header_new.m",
1651
+ "sha256": "895e6abc2f59df70a76e50abc36c25b1858593f26a189d3c75f8bf2554af9e02",
1652
+ "language": "MATLAB",
1653
+ "lines": 232,
1654
+ "truncated": false,
1655
+ "block": 3,
1656
+ "row": 15983
1657
+ },
1658
+ {
1659
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/refine.m",
1660
+ "sha256": "05bfcf54aed01fa5e89884333426a9428c57e39fb48228d04bed105f0777aa0a",
1661
+ "language": "MATLAB",
1662
+ "lines": 186,
1663
+ "truncated": false,
1664
+ "block": 3,
1665
+ "row": 15378
1666
+ },
1667
+ {
1668
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/removefields.m",
1669
+ "sha256": "3894cb6af17eda30189b62d21ea6c7f6a7e54823fb20537aa75467c2d879efe2",
1670
+ "language": "MATLAB",
1671
+ "lines": 44,
1672
+ "truncated": false,
1673
+ "block": 3,
1674
+ "row": 10893
1675
+ },
1676
+ {
1677
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/renamefields.m",
1678
+ "sha256": "da0a7db4bf65573380395a02420719db6f0c47cc29e2de1d4da50fb139126de4",
1679
+ "language": "MATLAB",
1680
+ "lines": 56,
1681
+ "truncated": false,
1682
+ "block": 3,
1683
+ "row": 11503
1684
+ },
1685
+ {
1686
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/sn2individual.m",
1687
+ "sha256": "0d37763fbf6df8ad53d48070d6280a28ef86ef00ab21d4b5423aeaecfac3bc96",
1688
+ "language": "MATLAB",
1689
+ "lines": 64,
1690
+ "truncated": false,
1691
+ "block": 3,
1692
+ "row": 12550
1693
+ },
1694
+ {
1695
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/surf_to_tetgen.m",
1696
+ "sha256": "68c03f5d4880093e5d2c447298c7ee5c19605b48a7a8a8e86130b2dcedddfe1e",
1697
+ "language": "MATLAB",
1698
+ "lines": 65,
1699
+ "truncated": false,
1700
+ "block": 3,
1701
+ "row": 11817
1702
+ },
1703
+ {
1704
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/tokenize.m",
1705
+ "sha256": "3bb4360dee94ce2ac87b9bdfd45380c59076a0e96a68e8d34fde0fd442158d63",
1706
+ "language": "MATLAB",
1707
+ "lines": 83,
1708
+ "truncated": false,
1709
+ "block": 3,
1710
+ "row": 12784
1711
+ },
1712
+ {
1713
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/write_nifti2_hdr.m",
1714
+ "sha256": "c4860f0000c0d26ad5cf2694a28a84e95a2bc9fa8d6ae8e26a91f664268892c9",
1715
+ "language": "MATLAB",
1716
+ "lines": 82,
1717
+ "truncated": false,
1718
+ "block": 3,
1719
+ "row": 14258
1720
+ },
1721
+ {
1722
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/write_off.m",
1723
+ "sha256": "a862eb4ac9219b74ea10626b98da73f89005222a987f8c44e7bd4c987a5bcdef",
1724
+ "language": "MATLAB",
1725
+ "lines": 58,
1726
+ "truncated": false,
1727
+ "block": 3,
1728
+ "row": 11626
1729
+ },
1730
+ {
1731
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/write_ply.m",
1732
+ "sha256": "abff123e89524ea528ebe3e1e167d70abb775919135aa7fb60ee29914878c82f",
1733
+ "language": "MATLAB",
1734
+ "lines": 120,
1735
+ "truncated": false,
1736
+ "block": 3,
1737
+ "row": 13250
1738
+ },
1739
+ {
1740
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/write_stl.m",
1741
+ "sha256": "d358afc0c7cb840e1d3db15f00621a1c5dce2b4f72fcba0dfe313166b8c3967c",
1742
+ "language": "MATLAB",
1743
+ "lines": 60,
1744
+ "truncated": false,
1745
+ "block": 3,
1746
+ "row": 12001
1747
+ },
1748
+ {
1749
+ "path": "functions_matlab/cifti-matlab-master/ft_cifti/private/write_vtk.m",
1750
+ "sha256": "654a3cdc632aae15136e6b3482d39052b3d16863eba77a39bf5d4bb38bf47f4b",
1751
+ "language": "MATLAB",
1752
+ "lines": 54,
1753
+ "truncated": false,
1754
+ "block": 3,
1755
+ "row": 10875
1756
+ },
1757
+ {
1758
+ "path": "functions_matlab/cifti-matlab-master/private/child_match.m",
1759
+ "sha256": "e6ddf94a46d6ef3237789073e219298f4de78bb128632af13d435ba3909d6449",
1760
+ "language": "MATLAB",
1761
+ "lines": 15,
1762
+ "truncated": false,
1763
+ "block": 3,
1764
+ "row": 9097
1765
+ },
1766
+ {
1767
+ "path": "functions_matlab/cifti-matlab-master/private/cifti_diminfo_length.m",
1768
+ "sha256": "8955c0dfb5e1d24c9b2bcb4f863ed0b28a42a57a3d647f4a833d7ca073b0328f",
1769
+ "language": "MATLAB",
1770
+ "lines": 19,
1771
+ "truncated": false,
1772
+ "block": 3,
1773
+ "row": 9648
1774
+ },
1775
+ {
1776
+ "path": "functions_matlab/cifti-matlab-master/private/cifti_parse_xml.m",
1777
+ "sha256": "e8036bfdea1fd7df2b9827ac072b2491c0484909398dbfb7d74992a473e211ad",
1778
+ "language": "MATLAB",
1779
+ "lines": 603,
1780
+ "truncated": false,
1781
+ "block": 3,
1782
+ "row": 17040
1783
+ },
1784
+ {
1785
+ "path": "functions_matlab/cifti-matlab-master/private/cifti_write_xml.m",
1786
+ "sha256": "42d37ec37a3c06aad6cf1e275952c20a28970ceafcd967b964289f8789b216c8",
1787
+ "language": "MATLAB",
1788
+ "lines": 309,
1789
+ "truncated": false,
1790
+ "block": 3,
1791
+ "row": 16756
1792
+ },
1793
+ {
1794
+ "path": "functions_matlab/cifti-matlab-master/private/fread_excepting.m",
1795
+ "sha256": "70caddea6c597bb3be4e9066cc23223d439db0ca89f5be5bb4cbdd3edf2f1721",
1796
+ "language": "MATLAB",
1797
+ "lines": 6,
1798
+ "truncated": false,
1799
+ "block": 3,
1800
+ "row": 8368
1801
+ },
1802
+ {
1803
+ "path": "functions_matlab/cifti-matlab-master/private/fwrite_excepting.m",
1804
+ "sha256": "f7cc6ecb5a728501581732764b199d5a6194c66e1a0a1bba0a094be59909bb68",
1805
+ "language": "MATLAB",
1806
+ "lines": 6,
1807
+ "truncated": false,
1808
+ "block": 3,
1809
+ "row": 8303
1810
+ },
1811
+ {
1812
+ "path": "functions_matlab/cifti-matlab-master/private/make_nifti2_hdr.m",
1813
+ "sha256": "fa2307e16fe926be29dc4a96a51ec070d03d342fc741dcf218313728b5860eb8",
1814
+ "language": "MATLAB",
1815
+ "lines": 41,
1816
+ "truncated": false,
1817
+ "block": 3,
1818
+ "row": 11201
1819
+ },
1820
+ {
1821
+ "path": "functions_matlab/cifti-matlab-master/private/my_system.m",
1822
+ "sha256": "d41c699e9ad5711779b19e437899ec56383ab0b7f349d4ef59955f98777f5977",
1823
+ "language": "MATLAB",
1824
+ "lines": 25,
1825
+ "truncated": false,
1826
+ "block": 3,
1827
+ "row": 9367
1828
+ },
1829
+ {
1830
+ "path": "functions_matlab/cifti-matlab-master/private/myargparse.m",
1831
+ "sha256": "01518709658490353cdc4bb22ac5d33cf3c3e9686f574309757336b7438a2b22",
1832
+ "language": "MATLAB",
1833
+ "lines": 20,
1834
+ "truncated": false,
1835
+ "block": 3,
1836
+ "row": 9437
1837
+ },
1838
+ {
1839
+ "path": "functions_matlab/cifti-matlab-master/private/myattrs.m",
1840
+ "sha256": "6f04e4977ee9a9d025089eb67188aed5c60515103081b8ea6afb0fee212d84fc",
1841
+ "language": "MATLAB",
1842
+ "lines": 10,
1843
+ "truncated": false,
1844
+ "block": 3,
1845
+ "row": 8478
1846
+ },
1847
+ {
1848
+ "path": "functions_matlab/cifti-matlab-master/private/mydelete.m",
1849
+ "sha256": "4fe2da31ffb38e9dfefd27e7fcf262ab23dc3e93ca9b7ad2188f80ffaa6bbfb5",
1850
+ "language": "MATLAB",
1851
+ "lines": 9,
1852
+ "truncated": false,
1853
+ "block": 3,
1854
+ "row": 8598
1855
+ },
1856
+ {
1857
+ "path": "functions_matlab/cifti-matlab-master/private/myendswith.m",
1858
+ "sha256": "ea4a8454e7e61c03a9e11956983f87ed719031c22218b1c8ca8951d6c5463253",
1859
+ "language": "MATLAB",
1860
+ "lines": 8,
1861
+ "truncated": false,
1862
+ "block": 3,
1863
+ "row": 8455
1864
+ },
1865
+ {
1866
+ "path": "functions_matlab/cifti-matlab-master/private/mygettext.m",
1867
+ "sha256": "c9dea89ce435ffbb1321bc4193b3daac2c9c80dc67f8ebe42f1dd2349bd0829d",
1868
+ "language": "MATLAB",
1869
+ "lines": 14,
1870
+ "truncated": false,
1871
+ "block": 3,
1872
+ "row": 8742
1873
+ },
1874
+ {
1875
+ "path": "functions_matlab/cifti-matlab-master/private/read_nifti2_hdr.m",
1876
+ "sha256": "46842b53c2e4a44fd13ddf5d4182ecba5f17e957f7a2aa1fc27a77487c9e9920",
1877
+ "language": "MATLAB",
1878
+ "lines": 182,
1879
+ "truncated": false,
1880
+ "block": 3,
1881
+ "row": 16188
1882
+ },
1883
+ {
1884
+ "path": "functions_matlab/cifti-matlab-master/private/sanity_check_cdata.m",
1885
+ "sha256": "aca722d0f1a29ba8352084be069746b7f80c951cfb2aa8ae8e002bfbc30fbe17",
1886
+ "language": "MATLAB",
1887
+ "lines": 27,
1888
+ "truncated": false,
1889
+ "block": 3,
1890
+ "row": 10315
1891
+ },
1892
+ {
1893
+ "path": "functions_matlab/cifti-matlab-master/private/str2vec.m",
1894
+ "sha256": "53a823f1d39b8394ab3d5d3b86923950f005d80c0006eb58a40974af51ccc020",
1895
+ "language": "MATLAB",
1896
+ "lines": 9,
1897
+ "truncated": false,
1898
+ "block": 3,
1899
+ "row": 9428
1900
+ },
1901
+ {
1902
+ "path": "functions_matlab/cifti-matlab-master/private/write_nifti2_hdr.m",
1903
+ "sha256": "c139d88610ba8ec3057f6f0b23fbb93b99a8f13dc467bf7ba9cb374e16e46bb5",
1904
+ "language": "MATLAB",
1905
+ "lines": 95,
1906
+ "truncated": false,
1907
+ "block": 3,
1908
+ "row": 14867
1909
+ },
1910
+ {
1911
+ "path": "functions_matlab/construct_SH_basis.m",
1912
+ "sha256": "1808fbc849fded0163b2c0bf68324d49301d9f593b30d29afff61951b4da6f63",
1913
+ "language": "MATLAB",
1914
+ "lines": 87,
1915
+ "truncated": false,
1916
+ "block": 3,
1917
+ "row": 13514
1918
+ },
1919
+ {
1920
+ "path": "functions_matlab/coord2freq_1D.m",
1921
+ "sha256": "38a2962f077cce917c0c5b86d0363a26c6ecc75b6e4c5e124f3239a4db33a27a",
1922
+ "language": "MATLAB",
1923
+ "lines": 34,
1924
+ "truncated": false,
1925
+ "block": 3,
1926
+ "row": 10302
1927
+ },
1928
+ {
1929
+ "path": "functions_matlab/corr_col.m",
1930
+ "sha256": "7279d4a8b385c3a66997737a8498228a97d4be80fcbd42e00bd7a251663e34ef",
1931
+ "language": "MATLAB",
1932
+ "lines": 53,
1933
+ "truncated": false,
1934
+ "block": 3,
1935
+ "row": 11243
1936
+ },
1937
+ {
1938
+ "path": "functions_matlab/ctfft.m",
1939
+ "sha256": "5fd9969bfa68f76a9ff6b0e7ba8a5c9ad6f1f9a1b07c442b07196cb3bd4a77e6",
1940
+ "language": "MATLAB",
1941
+ "lines": 26,
1942
+ "truncated": false,
1943
+ "block": 3,
1944
+ "row": 9230
1945
+ },
1946
+ {
1947
+ "path": "functions_matlab/draw_surface_bluewhitered.m",
1948
+ "sha256": "cf1af0fa9c53064869c83533f50e2fb2a146bbedf736f374d61d380d5a692e0b",
1949
+ "language": "MATLAB",
1950
+ "lines": 82,
1951
+ "truncated": false,
1952
+ "block": 3,
1953
+ "row": 13196
1954
+ },
1955
+ {
1956
+ "path": "functions_matlab/draw_surface_bluewhitered_dull.m",
1957
+ "sha256": "503a4c86500a053ae4dbfbf3bc6346f379041b5930a5779603df4ab0c353920e",
1958
+ "language": "MATLAB",
1959
+ "lines": 88,
1960
+ "truncated": false,
1961
+ "block": 3,
1962
+ "row": 13288
1963
+ },
1964
+ {
1965
+ "path": "functions_matlab/draw_surface_bluewhitered_gallery.m",
1966
+ "sha256": "129ae07aff893d30032e38a679a689e110bf1fbb40cb24c6241c7d632431e0b1",
1967
+ "language": "MATLAB",
1968
+ "lines": 94,
1969
+ "truncated": false,
1970
+ "block": 3,
1971
+ "row": 13878
1972
+ },
1973
+ {
1974
+ "path": "functions_matlab/draw_surface_bluewhitered_gallery_dull.m",
1975
+ "sha256": "4bfcbdba528a9275b72fdcb62c683f09a0734ca54702ce2964e11cd33ee32555",
1976
+ "language": "MATLAB",
1977
+ "lines": 100,
1978
+ "truncated": false,
1979
+ "block": 3,
1980
+ "row": 13969
1981
+ },
1982
+ {
1983
+ "path": "functions_matlab/draw_surface_parcellated_data_dull.m",
1984
+ "sha256": "b085345b5600a2be89826ee75dd7ac88754d683f02491e631df69d3c32fc8fd4",
1985
+ "language": "MATLAB",
1986
+ "lines": 178,
1987
+ "truncated": false,
1988
+ "block": 3,
1989
+ "row": 15012
1990
+ },
1991
+ {
1992
+ "path": "functions_matlab/draw_surface_parcellation_dull.m",
1993
+ "sha256": "1681acce6f5ba302061052920ada4fedbf69746d4e8419acde51dff76c0ad5ce",
1994
+ "language": "MATLAB",
1995
+ "lines": 165,
1996
+ "truncated": false,
1997
+ "block": 3,
1998
+ "row": 14759
1999
+ },
2000
+ {
2001
+ "path": "functions_matlab/draw_volume_bluewhitered.m",
2002
+ "sha256": "cc427b29ff4a04751dac058072507d08c9db5300e249455cc4eebd0164865260",
2003
+ "language": "MATLAB",
2004
+ "lines": 55,
2005
+ "truncated": false,
2006
+ "block": 3,
2007
+ "row": 11689
2008
+ },
2009
+ {
2010
+ "path": "functions_matlab/draw_volume_bluewhitered_gallery.m",
2011
+ "sha256": "b7a5669d2ca1a9092fd009d73da200ee7b69edc64ed8cb2fb87f02db1cc6925f",
2012
+ "language": "MATLAB",
2013
+ "lines": 63,
2014
+ "truncated": false,
2015
+ "block": 3,
2016
+ "row": 12273
2017
+ },
2018
+ {
2019
+ "path": "functions_matlab/extract_pvalue_text.m",
2020
+ "sha256": "7b3e2fcbf55ddb9813cf8dc546cb3894c9a5755f600b9600b7893a002307c8af",
2021
+ "language": "MATLAB",
2022
+ "lines": 26,
2023
+ "truncated": false,
2024
+ "block": 3,
2025
+ "row": 9473
2026
+ },
2027
+ {
2028
+ "path": "functions_matlab/freq2coord_1D.m",
2029
+ "sha256": "ce0f1f17fa08cc5187da372da5d886f64203d120dd1539806123fd06143cf932",
2030
+ "language": "MATLAB",
2031
+ "lines": 34,
2032
+ "truncated": false,
2033
+ "block": 3,
2034
+ "row": 10345
2035
+ },
2036
+ {
2037
+ "path": "functions_matlab/get_HCP_task_contrasts.m",
2038
+ "sha256": "0d1fbbad653a88cf15ddd0d529a3b2499618275b6408a25c6b7553021dd32392",
2039
+ "language": "MATLAB",
2040
+ "lines": 73,
2041
+ "truncated": false,
2042
+ "block": 3,
2043
+ "row": 12394
2044
+ },
2045
+ {
2046
+ "path": "functions_matlab/gifti-master/@gifti/Contents.m",
2047
+ "sha256": "04ca98ccdbc0d24b732d14fa0fe1ca093bbb68c937bb7842447bcd6ba86c410b",
2048
+ "language": "MATLAB",
2049
+ "lines": 42,
2050
+ "truncated": false,
2051
+ "block": 3,
2052
+ "row": 11596
2053
+ },
2054
+ {
2055
+ "path": "functions_matlab/gifti-master/@gifti/display.m",
2056
+ "sha256": "7448693504121606736ae4c679df9a79e48f35125ce16abd94c4d5dc4234694c",
2057
+ "language": "MATLAB",
2058
+ "lines": 25,
2059
+ "truncated": false,
2060
+ "block": 3,
2061
+ "row": 9396
2062
+ },
2063
+ {
2064
+ "path": "functions_matlab/gifti-master/@gifti/export.m",
2065
+ "sha256": "fab7e2c830f6ebaa92b00171cf133efe9c731ac61631399b2733d57a65ff7a41",
2066
+ "language": "MATLAB",
2067
+ "lines": 58,
2068
+ "truncated": false,
2069
+ "block": 3,
2070
+ "row": 11800
2071
+ },
2072
+ {
2073
+ "path": "functions_matlab/gifti-master/@gifti/fieldnames.m",
2074
+ "sha256": "979fef23e1b8136181d177e9240a01a05a8a69fb229be027a4926786e3bf6aca",
2075
+ "language": "MATLAB",
2076
+ "lines": 16,
2077
+ "truncated": false,
2078
+ "block": 3,
2079
+ "row": 9106
2080
+ },
2081
+ {
2082
+ "path": "functions_matlab/gifti-master/@gifti/gifti.m",
2083
+ "sha256": "d12d60f903bdd746b5fa498eebef4e744687a2046a003fbd9f131ae14d960d89",
2084
+ "language": "MATLAB",
2085
+ "lines": 148,
2086
+ "truncated": false,
2087
+ "block": 3,
2088
+ "row": 15018
2089
+ },
2090
+ {
2091
+ "path": "functions_matlab/gifti-master/@gifti/isfield.m",
2092
+ "sha256": "4e67933a24c1355e53f9bd08fad5d18c0c4e1ce4087d83a2a250984b7def3968",
2093
+ "language": "MATLAB",
2094
+ "lines": 13,
2095
+ "truncated": false,
2096
+ "block": 3,
2097
+ "row": 8849
2098
+ },
2099
+ {
2100
+ "path": "functions_matlab/gifti-master/@gifti/plot.m",
2101
+ "sha256": "27d73e2f1245e3e1cce18ef178878a154b2d59076d03281267cb1763c990740b",
2102
+ "language": "MATLAB",
2103
+ "lines": 68,
2104
+ "truncated": false,
2105
+ "block": 3,
2106
+ "row": 11192
2107
+ },
2108
+ {
2109
+ "path": "functions_matlab/gifti-master/@gifti/private/base64.c",
2110
+ "sha256": "b918eebc7f36bacb658eb4fc17dfc6d2b639a888601351c3b5a13f63dbe7b640",
2111
+ "language": "C",
2112
+ "lines": 136,
2113
+ "truncated": false,
2114
+ "block": 3,
2115
+ "row": 118
2116
+ },
2117
+ {
2118
+ "path": "functions_matlab/gifti-master/@gifti/private/base64.m",
2119
+ "sha256": "d3d8b22e75146bf5c0286c9a3ba8b275f9b3720530196d87a9b3a00faafd94b3",
2120
+ "language": "MATLAB",
2121
+ "lines": 30,
2122
+ "truncated": false,
2123
+ "block": 3,
2124
+ "row": 10015
2125
+ },
2126
+ {
2127
+ "path": "functions_matlab/gifti-master/@gifti/private/base64decode.m",
2128
+ "sha256": "775bd8667cb258c8088a09bfbc45f2a11800c578d5c5afcbac7cd19a7a66d2ac",
2129
+ "language": "MATLAB",
2130
+ "lines": 81,
2131
+ "truncated": false,
2132
+ "block": 3,
2133
+ "row": 13315
2134
+ },
2135
+ {
2136
+ "path": "functions_matlab/gifti-master/@gifti/private/base64encode.m",
2137
+ "sha256": "abea870acd7d06ffce225456ea2b4111c409412d7921e6cf6c0a57366a3ac24c",
2138
+ "language": "MATLAB",
2139
+ "lines": 157,
2140
+ "truncated": false,
2141
+ "block": 3,
2142
+ "row": 14859
2143
+ },
2144
+ {
2145
+ "path": "functions_matlab/gifti-master/@gifti/private/freesurfer_read.m",
2146
+ "sha256": "22b6c294f150a8ebceea9df6f9be2379a0727aa263d74695f7de363cb8018f67",
2147
+ "language": "MATLAB",
2148
+ "lines": 189,
2149
+ "truncated": false,
2150
+ "block": 3,
2151
+ "row": 15191
2152
+ },
2153
+ {
2154
+ "path": "functions_matlab/gifti-master/@gifti/private/getdict.m",
2155
+ "sha256": "ebd609a096cffac658bee9fc1943efcc6f085974c3c7f44be60edad7bffe39c2",
2156
+ "language": "MATLAB",
2157
+ "lines": 30,
2158
+ "truncated": false,
2159
+ "block": 3,
2160
+ "row": 10089
2161
+ },
2162
+ {
2163
+ "path": "functions_matlab/gifti-master/@gifti/private/gifti_read.m",
2164
+ "sha256": "7769d5498afefa646d3c8fdf21e7e6cb347db763bddd9913e1b8d1704c929c94",
2165
+ "language": "MATLAB",
2166
+ "lines": 249,
2167
+ "truncated": false,
2168
+ "block": 3,
2169
+ "row": 15900
2170
+ },
2171
+ {
2172
+ "path": "functions_matlab/gifti-master/@gifti/private/isintent.m",
2173
+ "sha256": "00197b7f1d15e94dd0f3b6fb836c18226bf2be2e8e9562454e289b66195b6d91",
2174
+ "language": "MATLAB",
2175
+ "lines": 116,
2176
+ "truncated": false,
2177
+ "block": 3,
2178
+ "row": 12990
2179
+ },
2180
+ {
2181
+ "path": "functions_matlab/gifti-master/@gifti/private/miniz.c",
2182
+ "sha256": "96a750851ee707644a34c24d7879fdd66086bd16c58b0bfdaa03b2ec16a1b8e8",
2183
+ "language": "C",
2184
+ "lines": 4327,
2185
+ "truncated": true,
2186
+ "block": 3,
2187
+ "row": 346
2188
+ },
2189
+ {
2190
+ "path": "functions_matlab/gifti-master/@gifti/private/mvtk_read.m",
2191
+ "sha256": "12d66621e63f38fa3d73fc19e8026d14eb6ae81296128ea64b3c2a340d7ef7e5",
2192
+ "language": "MATLAB",
2193
+ "lines": 168,
2194
+ "truncated": false,
2195
+ "block": 3,
2196
+ "row": 15042
2197
+ },
2198
+ {
2199
+ "path": "functions_matlab/gifti-master/@gifti/private/mvtk_write.m",
2200
+ "sha256": "20c27710e8293d095d94b7506eadae8e59380f929bce2093ef264df5ef7686d3",
2201
+ "language": "MATLAB",
2202
+ "lines": 569,
2203
+ "truncated": false,
2204
+ "block": 3,
2205
+ "row": 16804
2206
+ },
2207
+ {
2208
+ "path": "functions_matlab/gifti-master/@gifti/private/mz3_read.m",
2209
+ "sha256": "54b5ce68d9ba8eca559b04ebd77a2b2174d48bef7932554337fc586e044a265a",
2210
+ "language": "MATLAB",
2211
+ "lines": 114,
2212
+ "truncated": false,
2213
+ "block": 3,
2214
+ "row": 13765
2215
+ },
2216
+ {
2217
+ "path": "functions_matlab/gifti-master/@gifti/private/mz3_write.m",
2218
+ "sha256": "8da38436058027d00a6c508ade298c295794e300460a3be73c2127ba1f9cc4c7",
2219
+ "language": "MATLAB",
2220
+ "lines": 72,
2221
+ "truncated": false,
2222
+ "block": 3,
2223
+ "row": 12194
2224
+ },
2225
+ {
2226
+ "path": "functions_matlab/gifti-master/@gifti/private/obj_read.m",
2227
+ "sha256": "99c494201eab3acf5f3e276dc2dad8fd5caf1ce12181265bb6b1a0c6a82603f4",
2228
+ "language": "MATLAB",
2229
+ "lines": 85,
2230
+ "truncated": false,
2231
+ "block": 3,
2232
+ "row": 13244
2233
+ },
2234
+ {
2235
+ "path": "functions_matlab/gifti-master/@gifti/private/off_read.m",
2236
+ "sha256": "f5b491eb933c84748b181c478ebf022a09ce522f8fc8cf43731cd670c6db4404",
2237
+ "language": "MATLAB",
2238
+ "lines": 40,
2239
+ "truncated": false,
2240
+ "block": 3,
2241
+ "row": 10078
2242
+ },
2243
+ {
2244
+ "path": "functions_matlab/gifti-master/@gifti/private/ply_read.m",
2245
+ "sha256": "a5a3c47c498a6e14499eb8b9c524518d241b3aed412a55d803af59937a724724",
2246
+ "language": "MATLAB",
2247
+ "lines": 55,
2248
+ "truncated": false,
2249
+ "block": 3,
2250
+ "row": 10973
2251
+ },
2252
+ {
2253
+ "path": "functions_matlab/gifti-master/@gifti/private/stl_read.m",
2254
+ "sha256": "4d7c33399c04db803be583783dc0cd20696de9e4f7603dfa6d13a673e8473a17",
2255
+ "language": "MATLAB",
2256
+ "lines": 83,
2257
+ "truncated": false,
2258
+ "block": 3,
2259
+ "row": 12519
2260
+ },
2261
+ {
2262
+ "path": "functions_matlab/gifti-master/@gifti/private/xml_parser.c",
2263
+ "sha256": "5eb70f799d791f4d4afe23b0d4f47c11b72db0d03e7f5bf044556ffc93a98e33",
2264
+ "language": "C",
2265
+ "lines": 223,
2266
+ "truncated": false,
2267
+ "block": 3,
2268
+ "row": 186
2269
+ },
2270
+ {
2271
+ "path": "functions_matlab/gifti-master/@gifti/private/xml_parser.m",
2272
+ "sha256": "4bcfc9228e88f300fef3f049076f93ed18263e13107687296a93a91b1585c939",
2273
+ "language": "MATLAB",
2274
+ "lines": 37,
2275
+ "truncated": false,
2276
+ "block": 3,
2277
+ "row": 11065
2278
+ },
2279
+ {
2280
+ "path": "functions_matlab/gifti-master/@gifti/private/yxml.c",
2281
+ "sha256": "a557bf0a7d502622ac697f09da9bcf052fecb50469a32c5d98d595b5ab1d90d1",
2282
+ "language": "C",
2283
+ "lines": 1063,
2284
+ "truncated": false,
2285
+ "block": 3,
2286
+ "row": 298
2287
+ },
2288
+ {
2289
+ "path": "functions_matlab/gifti-master/@gifti/private/yxml.h",
2290
+ "sha256": "58a948636dbfb0bf51e2b44c8fd69d98d28abee6134f5b91d49db6651e07123e",
2291
+ "language": "C/C++",
2292
+ "lines": 167,
2293
+ "truncated": false,
2294
+ "block": 3,
2295
+ "row": 4161
2296
+ },
2297
+ {
2298
+ "path": "functions_matlab/gifti-master/@gifti/private/zstream.c",
2299
+ "sha256": "6ad6d576120bf9591a7955245211693ba5d98d5d8041e6b11446a85bb0d0ff8f",
2300
+ "language": "C",
2301
+ "lines": 87,
2302
+ "truncated": false,
2303
+ "block": 3,
2304
+ "row": 60
2305
+ },
2306
+ {
2307
+ "path": "functions_matlab/gifti-master/@gifti/private/zstream.m",
2308
+ "sha256": "0d83950227b9900b6e646566a3b63500ad68f7150ba441f98905928c93500dcb",
2309
+ "language": "MATLAB",
2310
+ "lines": 53,
2311
+ "truncated": false,
2312
+ "block": 3,
2313
+ "row": 12027
2314
+ },
2315
+ {
2316
+ "path": "functions_matlab/gifti-master/@gifti/save.m",
2317
+ "sha256": "f329781cc90eb10bdd33eb9503649e42e719b2adc9d931cf41a33fdb46012ad7",
2318
+ "language": "MATLAB",
2319
+ "lines": 253,
2320
+ "truncated": false,
2321
+ "block": 3,
2322
+ "row": 16101
2323
+ },
2324
+ {
2325
+ "path": "functions_matlab/gifti-master/@gifti/saveas.m",
2326
+ "sha256": "4f83569cb27638d59219cd6e612dc0753d5f24b46413a9dd04ff65db03047c11",
2327
+ "language": "MATLAB",
2328
+ "lines": 555,
2329
+ "truncated": false,
2330
+ "block": 3,
2331
+ "row": 16859
2332
+ },
2333
+ {
2334
+ "path": "functions_matlab/gifti-master/@gifti/struct.m",
2335
+ "sha256": "c9b96ba679e37a1d0b24cbc58c26a8e593a4a3deaddf7b0fc8791a02b8878058",
2336
+ "language": "MATLAB",
2337
+ "lines": 18,
2338
+ "truncated": false,
2339
+ "block": 3,
2340
+ "row": 9226
2341
+ },
2342
+ {
2343
+ "path": "functions_matlab/gifti-master/@gifti/subsasgn.m",
2344
+ "sha256": "16ab0c87792dc831a4405d5e8f80f6998aa6c65d409755c13d71d68959ca20a1",
2345
+ "language": "MATLAB",
2346
+ "lines": 146,
2347
+ "truncated": false,
2348
+ "block": 3,
2349
+ "row": 15329
2350
+ },
2351
+ {
2352
+ "path": "functions_matlab/gifti-master/@gifti/subsref.m",
2353
+ "sha256": "ecf5d87e88f21fa7bfcbe451c78486381b77515bcbc1acd3f57613e437e7bfb5",
2354
+ "language": "MATLAB",
2355
+ "lines": 60,
2356
+ "truncated": false,
2357
+ "block": 3,
2358
+ "row": 12117
2359
+ },
2360
+ {
2361
+ "path": "functions_matlab/gifti-master/tests/gifti_runtests.m",
2362
+ "sha256": "9bf95c75d8b2bc2af8d998396e87890a3cabc5d2bb99ffb28409751b49583bb9",
2363
+ "language": "MATLAB",
2364
+ "lines": 32,
2365
+ "truncated": false,
2366
+ "block": 3,
2367
+ "row": 10064
2368
+ },
2369
+ {
2370
+ "path": "functions_matlab/gifti-master/tests/test_gifti.m",
2371
+ "sha256": "7bc96a6acc807ee54e6ff6bbf8b078bd80afda59e31986866ae2be5b88c74125",
2372
+ "language": "MATLAB",
2373
+ "lines": 25,
2374
+ "truncated": false,
2375
+ "block": 3,
2376
+ "row": 8937
2377
+ },
2378
+ {
2379
+ "path": "functions_matlab/loadParameters_balloon_func.m",
2380
+ "sha256": "61cfe975ee9b9bd2d2f0313551edf78dab4dec8b48267cc40006d55f94cc81a3",
2381
+ "language": "MATLAB",
2382
+ "lines": 65,
2383
+ "truncated": false,
2384
+ "block": 3,
2385
+ "row": 12720
2386
+ },
2387
+ {
2388
+ "path": "functions_matlab/loadParameters_wave_func.m",
2389
+ "sha256": "a3e4068e371d57d466eaaebeab196a86f0cc2ab1b128ab86da9c94cb9978412d",
2390
+ "language": "MATLAB",
2391
+ "lines": 45,
2392
+ "truncated": false,
2393
+ "block": 3,
2394
+ "row": 11697
2395
+ },
2396
+ {
2397
+ "path": "functions_matlab/model_BOLD_balloon.m",
2398
+ "sha256": "5ec05eaf18110c4e62838e2ee6941962ef498a2c28e33ff1dcacd1367d356c73",
2399
+ "language": "MATLAB",
2400
+ "lines": 211,
2401
+ "truncated": false,
2402
+ "block": 3,
2403
+ "row": 15389
2404
+ },
2405
+ {
2406
+ "path": "functions_matlab/model_neural_waves.m",
2407
+ "sha256": "96c226b0b2120a77dc4e027c73bcb37893fe555404972ed079c24220c049ef0b",
2408
+ "language": "MATLAB",
2409
+ "lines": 143,
2410
+ "truncated": false,
2411
+ "block": 3,
2412
+ "row": 14497
2413
+ },
2414
+ {
2415
+ "path": "functions_matlab/plotSurfaceROIBoundary-master_v2/ExampleSurfacePlotFunction.m",
2416
+ "sha256": "7ca332a491efcdfa430ae4ef1b9c1c89dcf822e900cf317a07c17f2fe1402de6",
2417
+ "language": "MATLAB",
2418
+ "lines": 65,
2419
+ "truncated": false,
2420
+ "block": 3,
2421
+ "row": 12258
2422
+ },
2423
+ {
2424
+ "path": "functions_matlab/plotSurfaceROIBoundary-master_v2/demo_ExampleSurfacePlotFunction.m",
2425
+ "sha256": "7c9cbe012ce8ec0180e5700dd0da2205dc4e5c73a6c24585e968921b2f921b01",
2426
+ "language": "MATLAB",
2427
+ "lines": 182,
2428
+ "truncated": false,
2429
+ "block": 3,
2430
+ "row": 14586
2431
+ },
2432
+ {
2433
+ "path": "functions_matlab/plotSurfaceROIBoundary-master_v2/demo_plotSurfaceROIBoundary.m",
2434
+ "sha256": "868dd023edea488c5d1128eb9a103a4bc2ea1ce366b3c9b60151a36494d9c096",
2435
+ "language": "MATLAB",
2436
+ "lines": 141,
2437
+ "truncated": false,
2438
+ "block": 3,
2439
+ "row": 14124
2440
+ },
2441
+ {
2442
+ "path": "functions_matlab/plotSurfaceROIBoundary-master_v2/findROIboundaries.m",
2443
+ "sha256": "026cf674524614bb8a1be89ad930b54e819efd827d3e0246f6e8832ee36a074f",
2444
+ "language": "MATLAB",
2445
+ "lines": 936,
2446
+ "truncated": false,
2447
+ "block": 3,
2448
+ "row": 17136
2449
+ },
2450
+ {
2451
+ "path": "functions_matlab/plotSurfaceROIBoundary-master_v2/graphComponents.m",
2452
+ "sha256": "070ea955b18c67ab99657dd674e6712ad67ce47f32424e2193744952d62fbf49",
2453
+ "language": "MATLAB",
2454
+ "lines": 62,
2455
+ "truncated": false,
2456
+ "block": 3,
2457
+ "row": 12365
2458
+ },
2459
+ {
2460
+ "path": "functions_matlab/plotSurfaceROIBoundary-master_v2/makeFaceVertexCData.m",
2461
+ "sha256": "f66d576d9dddd87c17bb26203b6ca9dbc4b268bee1b765bc686fb0d34a2097e7",
2462
+ "language": "MATLAB",
2463
+ "lines": 237,
2464
+ "truncated": false,
2465
+ "block": 3,
2466
+ "row": 15679
2467
+ },
2468
+ {
2469
+ "path": "functions_matlab/plotSurfaceROIBoundary-master_v2/makeFaceVertexCData_old.m",
2470
+ "sha256": "e3063513bcfb6d80b57f1c2190e92bf6f3ce6eafde7ebc41ef82515eab498b93",
2471
+ "language": "MATLAB",
2472
+ "lines": 306,
2473
+ "truncated": false,
2474
+ "block": 3,
2475
+ "row": 16237
2476
+ },
2477
+ {
2478
+ "path": "functions_matlab/plotSurfaceROIBoundary-master_v2/plotSurfaceROIBoundary.m",
2479
+ "sha256": "3e503613fe6a40dbab01e884ff0d97164fa4456d86d7c45bf71986b3094e195b",
2480
+ "language": "MATLAB",
2481
+ "lines": 177,
2482
+ "truncated": false,
2483
+ "block": 3,
2484
+ "row": 15482
2485
+ },
2486
+ {
2487
+ "path": "functions_matlab/plotSurfaceROIBoundary-master_v2/read_annotation.m",
2488
+ "sha256": "af8460aaf146ba4f9d4366c5ffc2dc8a13c241d6e8d723942497489751d063fa",
2489
+ "language": "MATLAB",
2490
+ "lines": 183,
2491
+ "truncated": false,
2492
+ "block": 3,
2493
+ "row": 15425
2494
+ },
2495
+ {
2496
+ "path": "functions_matlab/plotSurfaceROIBoundary-master_v2/turbo.m",
2497
+ "sha256": "b3db30ba88f411073bb692e85a73adf90ad3e0604273a67e09b60cccd5765aa1",
2498
+ "language": "MATLAB",
2499
+ "lines": 274,
2500
+ "truncated": false,
2501
+ "block": 3,
2502
+ "row": 15935
2503
+ },
2504
+ {
2505
+ "path": "functions_matlab/process_volume_gradients_eigenmodes.m",
2506
+ "sha256": "c5438901126930ef102d81acd029ded8b284016f7a36e73678dda2ce841bfec0",
2507
+ "language": "MATLAB",
2508
+ "lines": 133,
2509
+ "truncated": false,
2510
+ "block": 3,
2511
+ "row": 14934
2512
+ },
2513
+ {
2514
+ "path": "functions_matlab/read_vtk.m",
2515
+ "sha256": "043bd5f7c541c19de2ded9946656a4e5d6551a2c1515a26fffcd6047f5fbfff5",
2516
+ "language": "MATLAB",
2517
+ "lines": 90,
2518
+ "truncated": false,
2519
+ "block": 3,
2520
+ "row": 11585
2521
+ },
2522
+ {
2523
+ "path": "functions_matlab/rotate_parcellation-master/Matlab/centroid_extraction_sphere.m",
2524
+ "sha256": "214c881af016de201b957b5e580aba3947945ce27146175e97f8e4b30b6a1388",
2525
+ "language": "MATLAB",
2526
+ "lines": 33,
2527
+ "truncated": false,
2528
+ "block": 1,
2529
+ "row": 3112
2530
+ },
2531
+ {
2532
+ "path": "functions_matlab/rotate_parcellation-master/Matlab/perm_sphere_p.m",
2533
+ "sha256": "cd8b2b3ae78d065bf1b8cefaac7ad5bc2c15a522e80a60068b5b69f89914081b",
2534
+ "language": "MATLAB",
2535
+ "lines": 93,
2536
+ "truncated": false,
2537
+ "block": 1,
2538
+ "row": 3459
2539
+ },
2540
+ {
2541
+ "path": "functions_matlab/rotate_parcellation-master/Matlab/rotate_parcellation.m",
2542
+ "sha256": "4709378b7df9f99d27243a20b4a570b2368df8bcbd6a001333e2d9482ed0afe9",
2543
+ "language": "MATLAB",
2544
+ "lines": 167,
2545
+ "truncated": false,
2546
+ "block": 3,
2547
+ "row": 15866
2548
+ },
2549
+ {
2550
+ "path": "functions_matlab/rotate_parcellation-master/R/perm.sphere.p.R",
2551
+ "sha256": "86598ec11e3b40af3cba172e3e15a42e3381c06b4ad4bfc7fa4fef0a4658850f",
2552
+ "language": "R",
2553
+ "lines": 52,
2554
+ "truncated": false,
2555
+ "block": 1,
2556
+ "row": 10090
2557
+ },
2558
+ {
2559
+ "path": "functions_matlab/rotate_parcellation-master/R/rotate.parcellation.R",
2560
+ "sha256": "436799892904a75482505320a88b7fc514e77c398dcfea4c6c35e1922db009ec",
2561
+ "language": "R",
2562
+ "lines": 185,
2563
+ "truncated": false,
2564
+ "block": 4,
2565
+ "row": 867
2566
+ },
2567
+ {
2568
+ "path": "functions_matlab/threshold_edges_proportional.m",
2569
+ "sha256": "41f323438d20d1353ff960dc425fa56ec9ad8278a08cc0659ae3112d28d39618",
2570
+ "language": "MATLAB",
2571
+ "lines": 49,
2572
+ "truncated": false,
2573
+ "block": 3,
2574
+ "row": 11767
2575
+ },
2576
+ {
2577
+ "path": "functions_matlab/turbo.m",
2578
+ "sha256": "7702be6b997f014a819f80da10469895194823df4109be723b3e1c17cbffdbcf",
2579
+ "language": "MATLAB",
2580
+ "lines": 287,
2581
+ "truncated": false,
2582
+ "block": 3,
2583
+ "row": 15794
2584
+ },
2585
+ {
2586
+ "path": "functions_matlab/video_surface_activity.m",
2587
+ "sha256": "afd3a3ef2e966f9cef3455784c1bd04e3722c6901412f855e9f2876bb5db106a",
2588
+ "language": "MATLAB",
2589
+ "lines": 227,
2590
+ "truncated": false,
2591
+ "block": 3,
2592
+ "row": 15910
2593
+ },
2594
+ {
2595
+ "path": "generate_paper_figures_extended_Nature.m",
2596
+ "sha256": "f3129b6848217a04aa88e7289164b418c38bf01e720f1e1082931b3e63214aa5",
2597
+ "language": "MATLAB",
2598
+ "lines": 1491,
2599
+ "truncated": false,
2600
+ "block": 3,
2601
+ "row": 17227
2602
+ },
2603
+ {
2604
+ "path": "generate_paper_figures_main_Nature.m",
2605
+ "sha256": "b47fabc6906c7c4118832e53f8452d925e820230a2121f8090e85a3d4922395e",
2606
+ "language": "MATLAB",
2607
+ "lines": 1866,
2608
+ "truncated": false,
2609
+ "block": 3,
2610
+ "row": 17256
2611
+ },
2612
+ {
2613
+ "path": "generate_paper_figures_main_bioRxiv.m",
2614
+ "sha256": "b2c4584dd4436d2535dcd7128fc3604ca9d9f9f85bd31e02b2a49f132ecb17b5",
2615
+ "language": "MATLAB",
2616
+ "lines": 1864,
2617
+ "truncated": false,
2618
+ "block": 3,
2619
+ "row": 17255
2620
+ },
2621
+ {
2622
+ "path": "generate_paper_figures_supp_Nature.m",
2623
+ "sha256": "f1905c961284a23e6e29a3691c318592aeb4b9422db564f08193eb30fb555994",
2624
+ "language": "MATLAB",
2625
+ "lines": 1020,
2626
+ "truncated": false,
2627
+ "block": 3,
2628
+ "row": 17167
2629
+ },
2630
+ {
2631
+ "path": "generate_paper_figures_supp_bioRxiv.m",
2632
+ "sha256": "6436f655b15b5681c058a472ab8a15672c79aaae35a044987371eb3a66ed5175",
2633
+ "language": "MATLAB",
2634
+ "lines": 2306,
2635
+ "truncated": false,
2636
+ "block": 3,
2637
+ "row": 17258
2638
+ },
2639
+ {
2640
+ "path": "surface_eigenmodes.py",
2641
+ "sha256": "765e53cd7806446235f7042638ce548c9e7e87a63ce3982d06f5d09dc25084ca",
2642
+ "language": "Python",
2643
+ "lines": 246,
2644
+ "truncated": false,
2645
+ "block": 3,
2646
+ "row": 25516
2647
+ },
2648
+ {
2649
+ "path": "volume_eigenmodes.py",
2650
+ "sha256": "81fefd10cb56fc93a2d2f7aebd1f6ea38d4ede14c877e5001627cb4777c0a76a",
2651
+ "language": "Python",
2652
+ "lines": 376,
2653
+ "truncated": false,
2654
+ "block": 3,
2655
+ "row": 26481
2656
+ }
2657
+ ]
2658
+ }
manifests/0c/github.com__piskvorky__gensim-data.json ADDED
@@ -0,0 +1,48 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/piskvorky/gensim-data",
4
+ "url": "https://github.com/piskvorky/gensim-data",
5
+ "host": "github.com",
6
+ "commit": "bd93f51f7536dbf84f194cd8a81c0644b7b95b41",
7
+ "license": "LGPL-2.1",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "dc626520dcd53a22f727af3ee42c770e56c97a64fe3adb063799d8ab032fe551",
14
+ "language": "License",
15
+ "lines": 502,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 8163
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "f8b1ae4c1c379455fb1f70284a174083d0ec89f5073180d79acbf59a08473f9d",
23
+ "language": "Text",
24
+ "lines": 150,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2716
28
+ },
29
+ {
30
+ "path": "_test_all.py",
31
+ "sha256": "396b4ba912f63c30cf51ebcd040835d49a74bff9f69cfc11bd69f1c6c94ff11f",
32
+ "language": "Python",
33
+ "lines": 58,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 19860
37
+ },
38
+ {
39
+ "path": "generate_table.py",
40
+ "sha256": "486ec3a8d3ee5aa9e9082055ec75664f058c95d67c23e6abb58afe6d5d7f1d03",
41
+ "language": "Python",
42
+ "lines": 60,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 20987
46
+ }
47
+ ]
48
+ }
manifests/0c/zenodo__20314327.json ADDED
@@ -0,0 +1,975 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "zenodo:20314327",
4
+ "url": "https://doi.org/10.5281/zenodo.20314327",
5
+ "host": "zenodo.org",
6
+ "commit": "",
7
+ "license": "GPL-3.0",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "All Code and Data to Generate Plots and Stats/Vetere_2026_AllPlotsAndStats.Rmd",
13
+ "sha256": "a046ff32c4318eac519cc616b922d8f3f62729ee6442d816689cf350df58f1ae",
14
+ "language": "R",
15
+ "lines": 4284,
16
+ "truncated": false,
17
+ "block": 4,
18
+ "row": 1246
19
+ },
20
+ {
21
+ "path": "Ephys_Preprocessing/EphysPreprocessing_Pipeline.m",
22
+ "sha256": "8fdceea4ad6b2cfca45f12e1f3949b2b5271a9e75a0b72c9e3230fa594ede3eb",
23
+ "language": "MATLAB",
24
+ "lines": 133,
25
+ "truncated": false,
26
+ "block": 3,
27
+ "row": 14693
28
+ },
29
+ {
30
+ "path": "Ephys_Preprocessing/find_bad_ch_batch.m",
31
+ "sha256": "d11ea787aeda04d9d1d445097cac6bb559d28088515feecafd332b1715b8aaa5",
32
+ "language": "MATLAB",
33
+ "lines": 139,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 15124
37
+ },
38
+ {
39
+ "path": "Ephys_Preprocessing/functions/BackgroundSubtraction.m",
40
+ "sha256": "48697c92c15d887fa14516bd60721dce19a56dfe33fc49d50fc7c77de9f7594a",
41
+ "language": "MATLAB",
42
+ "lines": 83,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 12636
46
+ },
47
+ {
48
+ "path": "Ephys_Preprocessing/functions/DownsampleRecordingTo1000Hz.m",
49
+ "sha256": "b9748e85f398c02bbb8dec9a7ab252b15dba38df17b075834788f4d66c6c96be",
50
+ "language": "MATLAB",
51
+ "lines": 31,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 10010
55
+ },
56
+ {
57
+ "path": "Ephys_Preprocessing/functions/FilterOnly_P_notch.m",
58
+ "sha256": "904d63a69eb9efd70a839933d273359c49d6bd7b3f66683418b162b97a3bb73c",
59
+ "language": "MATLAB",
60
+ "lines": 61,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 12167
64
+ },
65
+ {
66
+ "path": "Ephys_Preprocessing/functions/PlotBehavior.m",
67
+ "sha256": "3049682b51cec4ca74a2c5af512c4776b61f385cd0487cc553ea58c35d32f29b",
68
+ "language": "MATLAB",
69
+ "lines": 189,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 15175
73
+ },
74
+ {
75
+ "path": "Ephys_Preprocessing/functions/Plotting_for_Channel_Localization/CoherenceMatByAnimal.m",
76
+ "sha256": "db66ca51ff6d74b54515cac58ce76802f72590fcbd44f76448f922125b01a7dd",
77
+ "language": "MATLAB",
78
+ "lines": 91,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 13941
82
+ },
83
+ {
84
+ "path": "Ephys_Preprocessing/functions/Plotting_for_Channel_Localization/CoherenceMatByAnimalPlot.m",
85
+ "sha256": "408f2c2f2a51a5d1ea61a422eaae870fb9cd3e1193a1f06542ce3c848813fe85",
86
+ "language": "MATLAB",
87
+ "lines": 177,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 15096
91
+ },
92
+ {
93
+ "path": "Ephys_Preprocessing/functions/Plotting_for_Channel_Localization/LFPphasedev_running.m",
94
+ "sha256": "a435b7f0402b2b1d4610be1cc072372deebecb36fc3c3db3d714dc9fdec73c22",
95
+ "language": "MATLAB",
96
+ "lines": 125,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 13798
100
+ },
101
+ {
102
+ "path": "Ephys_Preprocessing/functions/Plotting_for_Channel_Localization/PlotChannelsToGetLayers.m",
103
+ "sha256": "12a837564ae3d9149969889721eae3ba63ef7c5149af4512ca910b939e83f4b6",
104
+ "language": "MATLAB",
105
+ "lines": 83,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 12173
109
+ },
110
+ {
111
+ "path": "Ephys_Preprocessing/functions/Plotting_for_Channel_Localization/PowerByChannel.m",
112
+ "sha256": "cf5973b742e57b356bd8f2606516591b2bea040c88e2766526042a8270a2aa93",
113
+ "language": "MATLAB",
114
+ "lines": 498,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 16670
118
+ },
119
+ {
120
+ "path": "Ephys_Preprocessing/functions/Plotting_for_Channel_Localization/VRstatearraysNEW.m",
121
+ "sha256": "a1620b253172f16ce4f2fb70ace065c44572e59824d9c46736399b454314072e",
122
+ "language": "MATLAB",
123
+ "lines": 103,
124
+ "truncated": false,
125
+ "block": 3,
126
+ "row": 13661
127
+ },
128
+ {
129
+ "path": "Ephys_Preprocessing/functions/Plotting_for_Channel_Localization/extractLFP2_restricttime_notch.m",
130
+ "sha256": "aa5a41a31a20fce1af6a6c22c20d2db5e7c421a8a6165ddb795223d526a5d2e9",
131
+ "language": "MATLAB",
132
+ "lines": 68,
133
+ "truncated": false,
134
+ "block": 3,
135
+ "row": 11904
136
+ },
137
+ {
138
+ "path": "Ephys_Preprocessing/functions/Plotting_for_Channel_Localization/getruntimes.m",
139
+ "sha256": "64923f210580eefc4f00724628aa915d7f0a2a47a9ac418f16a293bbd2228f0a",
140
+ "language": "MATLAB",
141
+ "lines": 43,
142
+ "truncated": false,
143
+ "block": 3,
144
+ "row": 10957
145
+ },
146
+ {
147
+ "path": "Ephys_Preprocessing/functions/Plotting_for_Channel_Localization/plotcoherence.m",
148
+ "sha256": "711c410bb766e261d9c78f89d21fc6051f920c0122bb8032e3fe92f50212c929",
149
+ "language": "MATLAB",
150
+ "lines": 68,
151
+ "truncated": false,
152
+ "block": 3,
153
+ "row": 11393
154
+ },
155
+ {
156
+ "path": "Ephys_Preprocessing/functions/Plotting_for_Channel_Localization/plotlayers.m",
157
+ "sha256": "42173998cde8c4fdafea0ecd509bd69469257e42a77764de3aeb3fb4fb3bb524",
158
+ "language": "MATLAB",
159
+ "lines": 95,
160
+ "truncated": false,
161
+ "block": 3,
162
+ "row": 12983
163
+ },
164
+ {
165
+ "path": "Ephys_Preprocessing/functions/SaveEachChannel.m",
166
+ "sha256": "23cf7eadaf0e1e8f37f08d5f1972a3337f47e106c2ab81321cba36dc2b689ea0",
167
+ "language": "MATLAB",
168
+ "lines": 92,
169
+ "truncated": false,
170
+ "block": 3,
171
+ "row": 12925
172
+ },
173
+ {
174
+ "path": "Ephys_Preprocessing/functions/clean60hznoise_LV.m",
175
+ "sha256": "c20bc28a208f34dfa5cae61ef17fdd92160b58718441bd1096237b79fe440d55",
176
+ "language": "MATLAB",
177
+ "lines": 86,
178
+ "truncated": false,
179
+ "block": 3,
180
+ "row": 13218
181
+ },
182
+ {
183
+ "path": "Ephys_Preprocessing/functions/read_Intan_RHD2000_file.m",
184
+ "sha256": "df75f3b0cfef09c5363b6155bbe9e1ff2df2c4ce8d52dee22c62bf62dcde922b",
185
+ "language": "MATLAB",
186
+ "lines": 632,
187
+ "truncated": false,
188
+ "block": 3,
189
+ "row": 16967
190
+ },
191
+ {
192
+ "path": "Ephys_Preprocessing/functions/read_Intan_RHD2000_file_noselect.m",
193
+ "sha256": "39befecead83c4dc23f0734501b8ed849d37dae99e8b536fca83b1237ae4a9f1",
194
+ "language": "MATLAB",
195
+ "lines": 634,
196
+ "truncated": false,
197
+ "block": 3,
198
+ "row": 16969
199
+ },
200
+ {
201
+ "path": "LFP_Analysis/Coherence/chronux/coherencyc.m",
202
+ "sha256": "a3c16749c91ffa2f5976fb3977089e64d58c2cb8de4f03552425485ddbb17417",
203
+ "language": "MATLAB",
204
+ "lines": 86,
205
+ "truncated": false,
206
+ "block": 3,
207
+ "row": 14674
208
+ },
209
+ {
210
+ "path": "LFP_Analysis/Coherence/chronux/coherencysegc.m",
211
+ "sha256": "dd4491fdd02d18f14ec8afb0d302c509e8aac9aff590f5bd4941687c12551c4f",
212
+ "language": "MATLAB",
213
+ "lines": 86,
214
+ "truncated": false,
215
+ "block": 3,
216
+ "row": 14794
217
+ },
218
+ {
219
+ "path": "LFP_Analysis/Coherence/coh_data_export_forR.m",
220
+ "sha256": "21a350ab7f6340402855bd6128f07c9297c85f7180fcc341c41d336cbb44d2e6",
221
+ "language": "MATLAB",
222
+ "lines": 241,
223
+ "truncated": false,
224
+ "block": 3,
225
+ "row": 16340
226
+ },
227
+ {
228
+ "path": "LFP_Analysis/Coherence/coherency_allregions_multi_drift.m",
229
+ "sha256": "c161f99b84bc6f40e11c734ddf5d2baeb6aaf3077a308d2a6c962b1ca2741a80",
230
+ "language": "MATLAB",
231
+ "lines": 491,
232
+ "truncated": false,
233
+ "block": 3,
234
+ "row": 16954
235
+ },
236
+ {
237
+ "path": "LFP_Analysis/Coherence/coherency_allregions_multi_drift_byspeed.m",
238
+ "sha256": "3669928a337920135f5a6c92bb95cffdf8db8bb87ed6d91b47ab3743183da51d",
239
+ "language": "MATLAB",
240
+ "lines": 497,
241
+ "truncated": false,
242
+ "block": 3,
243
+ "row": 16958
244
+ },
245
+ {
246
+ "path": "LFP_Analysis/Coherence/coherency_test_all_regions_multi_drift_bylyr_noweighting.m",
247
+ "sha256": "4211af1873369a862e577cf05364ff758753c6d92f2cf4eb41ca197dc2242002",
248
+ "language": "MATLAB",
249
+ "lines": 606,
250
+ "truncated": false,
251
+ "block": 3,
252
+ "row": 17039
253
+ },
254
+ {
255
+ "path": "LFP_Analysis/Current_Source_Density/CSD_bygroup.m",
256
+ "sha256": "9e64576d9d9c4ccdea5c96c318bb7270c44dfb822377b3218ccc9e131341e2a0",
257
+ "language": "MATLAB",
258
+ "lines": 1108,
259
+ "truncated": false,
260
+ "block": 3,
261
+ "row": 17165
262
+ },
263
+ {
264
+ "path": "LFP_Analysis/Current_Source_Density/bz_eventCSD_lv.m",
265
+ "sha256": "7aee96214b32e6a9f13c76087baa3f2831ff9d4ed7dfb859e58585cf6d7fdd14",
266
+ "language": "MATLAB",
267
+ "lines": 211,
268
+ "truncated": false,
269
+ "block": 3,
270
+ "row": 15781
271
+ },
272
+ {
273
+ "path": "LFP_Analysis/Current_Source_Density/bz_eventCSD_lv_by_speed.m",
274
+ "sha256": "facebeccecf25ba3d7a717c58ee6a5ada0d8d7e6c6d772924c25cb658534a1ae",
275
+ "language": "MATLAB",
276
+ "lines": 197,
277
+ "truncated": false,
278
+ "block": 3,
279
+ "row": 15603
280
+ },
281
+ {
282
+ "path": "LFP_Analysis/Current_Source_Density/bz_eventCSD_lv_forexamplefigs.m",
283
+ "sha256": "0f83d0561ac7c87f4fda217a7a3bd3e1bc1a66b21076d7bf7aec5d2cf2c0aefc",
284
+ "language": "MATLAB",
285
+ "lines": 207,
286
+ "truncated": false,
287
+ "block": 3,
288
+ "row": 15704
289
+ },
290
+ {
291
+ "path": "LFP_Analysis/Current_Source_Density/export_CSD.m",
292
+ "sha256": "74033b22cf5849f8eb348b0fc6173f0980b03bf1306d39019bce48d081a160c5",
293
+ "language": "MATLAB",
294
+ "lines": 96,
295
+ "truncated": false,
296
+ "block": 3,
297
+ "row": 14422
298
+ },
299
+ {
300
+ "path": "LFP_Analysis/Current_Source_Density/export_CSD_by_speed.m",
301
+ "sha256": "07854f2b4ab98dbe4d71db0ae4d0623e77f8eef9cb419fd18fd73cd45c4b6ca3",
302
+ "language": "MATLAB",
303
+ "lines": 121,
304
+ "truncated": false,
305
+ "block": 3,
306
+ "row": 14947
307
+ },
308
+ {
309
+ "path": "LFP_Analysis/Current_Source_Density/plot_CSD_bygroup_V2_by_speed.m",
310
+ "sha256": "0f9764b5f31862d2554a4a66790d0552597d9679abecf69da1d7cc3fb1fdc50c",
311
+ "language": "MATLAB",
312
+ "lines": 1108,
313
+ "truncated": false,
314
+ "block": 3,
315
+ "row": 17170
316
+ },
317
+ {
318
+ "path": "LFP_Analysis/Current_Source_Density/plot_CSD_examplefigs.m",
319
+ "sha256": "b7a8c172e9832782cca1086b9676a37996a9d7b1723a120ebe8c6d57094c2bb8",
320
+ "language": "MATLAB",
321
+ "lines": 41,
322
+ "truncated": false,
323
+ "block": 3,
324
+ "row": 11744
325
+ },
326
+ {
327
+ "path": "LFP_Analysis/Current_Source_Density/pre_CSD.m",
328
+ "sha256": "018126ae473b8e0feb64fcc15fb4476c4c257f59753bc3fc3e36439d54e743a2",
329
+ "language": "MATLAB",
330
+ "lines": 266,
331
+ "truncated": false,
332
+ "block": 3,
333
+ "row": 16129
334
+ },
335
+ {
336
+ "path": "LFP_Analysis/Current_Source_Density/pre_CSD_by_speed.m",
337
+ "sha256": "b2ce38656fd1b4a2f32728025a7e2ddc51c49fd509fa464a25a538be94b6841c",
338
+ "language": "MATLAB",
339
+ "lines": 250,
340
+ "truncated": false,
341
+ "block": 3,
342
+ "row": 16036
343
+ },
344
+ {
345
+ "path": "LFP_Analysis/Frequency/wavelet_PSD_LV_drift.m",
346
+ "sha256": "31d83d0a66acceac42b032e097fe4a1d9481412f100e62425fa326059736aeed",
347
+ "language": "MATLAB",
348
+ "lines": 401,
349
+ "truncated": false,
350
+ "block": 3,
351
+ "row": 16560
352
+ },
353
+ {
354
+ "path": "LFP_Analysis/LFP_Processing_Pipeline.m",
355
+ "sha256": "3d44cd6b25ef28fbe47d97aae29f8654d6ef4132422b0d8c9ae826c565532269",
356
+ "language": "MATLAB",
357
+ "lines": 113,
358
+ "truncated": false,
359
+ "block": 3,
360
+ "row": 15461
361
+ },
362
+ {
363
+ "path": "LFP_Analysis/Power/Power_by_layer_drift.m",
364
+ "sha256": "b848f0eb6c3b4201b2febcac98f41263090ad87584333e8582cbb7a6e1ee3bf7",
365
+ "language": "MATLAB",
366
+ "lines": 296,
367
+ "truncated": false,
368
+ "block": 3,
369
+ "row": 16630
370
+ },
371
+ {
372
+ "path": "LFP_Analysis/Power/Power_by_speed.m",
373
+ "sha256": "94659d338926c719570ba00314a1d56cc4b1e469312b4aea47f046cecfc0ceeb",
374
+ "language": "MATLAB",
375
+ "lines": 287,
376
+ "truncated": false,
377
+ "block": 3,
378
+ "row": 16321
379
+ },
380
+ {
381
+ "path": "LFP_Analysis/Visualizations/plotexample_LFPs.m",
382
+ "sha256": "6bf777c14e9868096692203f24cb6a83af290042085e8ccf5c897562c6a9005b",
383
+ "language": "MATLAB",
384
+ "lines": 175,
385
+ "truncated": false,
386
+ "block": 3,
387
+ "row": 14603
388
+ },
389
+ {
390
+ "path": "LFP_Analysis/Visualizations/plotexample_theta.m",
391
+ "sha256": "ed970e921ffa6aa5f1a4dfc06f1cf6147611a0f3732259767431dd1ef3e1ee9b",
392
+ "language": "MATLAB",
393
+ "lines": 161,
394
+ "truncated": false,
395
+ "block": 3,
396
+ "row": 14435
397
+ },
398
+ {
399
+ "path": "LICENSE",
400
+ "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986",
401
+ "language": "License",
402
+ "lines": 674,
403
+ "truncated": false,
404
+ "block": 1,
405
+ "row": 2235
406
+ },
407
+ {
408
+ "path": "Metadata_and_Helper_Functions/get_exp.m",
409
+ "sha256": "f24b537a3790b077e08cfcde87a19a708bf5eceb0e5be054641f42314b7e5e60",
410
+ "language": "MATLAB",
411
+ "lines": 73,
412
+ "truncated": false,
413
+ "block": 3,
414
+ "row": 14395
415
+ },
416
+ {
417
+ "path": "Metadata_and_Helper_Functions/get_time_windows_drift.m",
418
+ "sha256": "67966d0450c33b64eece5e12287093eb765513d2d3b7b8eb2fa088a960493e25",
419
+ "language": "MATLAB",
420
+ "lines": 45,
421
+ "truncated": false,
422
+ "block": 3,
423
+ "row": 11156
424
+ },
425
+ {
426
+ "path": "Metadata_and_Helper_Functions/getchannels_drift.m",
427
+ "sha256": "60202f8f58d5d966545f38d0fd407588a65b65e604d108ab352f7fa6b04c5f68",
428
+ "language": "MATLAB",
429
+ "lines": 108,
430
+ "truncated": false,
431
+ "block": 3,
432
+ "row": 13506
433
+ },
434
+ {
435
+ "path": "Metadata_and_Helper_Functions/getshankECHIP_LV.m",
436
+ "sha256": "7d3e63c714d59f723e385a3a350219e3b65e72209f20f43fc53798452569fdf3",
437
+ "language": "MATLAB",
438
+ "lines": 115,
439
+ "truncated": false,
440
+ "block": 3,
441
+ "row": 13105
442
+ },
443
+ {
444
+ "path": "Metadata_and_Helper_Functions/getshankECHIP_LV_multi.m",
445
+ "sha256": "52d1b60d5420109a7072450d559338ca6503d034fc6b53b6ac312a033aa15e56",
446
+ "language": "MATLAB",
447
+ "lines": 115,
448
+ "truncated": false,
449
+ "block": 3,
450
+ "row": 13312
451
+ },
452
+ {
453
+ "path": "Metadata_and_Helper_Functions/probe_256AN_bottom.m",
454
+ "sha256": "706be2b0ac22206fcab4e8b3bc9dc529d1a19d557bf76d3083c10d8807febc3c",
455
+ "language": "MATLAB",
456
+ "lines": 312,
457
+ "truncated": false,
458
+ "block": 3,
459
+ "row": 15105
460
+ },
461
+ {
462
+ "path": "Metadata_and_Helper_Functions/probe_256A_bottom.m",
463
+ "sha256": "f512d4d45644556e08279b46dbdc3b2ecdbcb5a8b0010d6246086466a7165ef0",
464
+ "language": "MATLAB",
465
+ "lines": 309,
466
+ "truncated": false,
467
+ "block": 3,
468
+ "row": 16768
469
+ },
470
+ {
471
+ "path": "Metadata_and_Helper_Functions/restrict_time_drift.m",
472
+ "sha256": "9196da108a9a28d5d4836726c5e1ba8311fff7f767da42f74153322d6a4d233e",
473
+ "language": "MATLAB",
474
+ "lines": 64,
475
+ "truncated": false,
476
+ "block": 3,
477
+ "row": 11608
478
+ },
479
+ {
480
+ "path": "README.md",
481
+ "sha256": "83d861e0de7e2f19f7e29d7b8a6dc1fae752bfa134b3b4bf7c112f7cd87e6dd5",
482
+ "language": "Text",
483
+ "lines": 7,
484
+ "truncated": false,
485
+ "block": 4,
486
+ "row": 2328
487
+ },
488
+ {
489
+ "path": "Single_Unit_Analysis/CircStat2012a/Contents.m",
490
+ "sha256": "567ce4cb64786157d6e8f8ee967bd8f3e304d522d95b2facd780d9741e52d86f",
491
+ "language": "MATLAB",
492
+ "lines": 63,
493
+ "truncated": false,
494
+ "block": 3,
495
+ "row": 12877
496
+ },
497
+ {
498
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_ang2rad.m",
499
+ "sha256": "a21b6b62ba189a3aacaf8d844a5b4f2c91aa3f0ef8e6ca5496dd145ae9cab287",
500
+ "language": "MATLAB",
501
+ "lines": 11,
502
+ "truncated": false,
503
+ "block": 3,
504
+ "row": 8489
505
+ },
506
+ {
507
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_axial.m",
508
+ "sha256": "db9492a2c1807c921332410e8100928ddc722a919cc225ced66d537d32907f8b",
509
+ "language": "MATLAB",
510
+ "lines": 29,
511
+ "truncated": false,
512
+ "block": 3,
513
+ "row": 9038
514
+ },
515
+ {
516
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_axialmean.m",
517
+ "sha256": "bf11031618c7bfafd81761a4b7361a91e9b4bc3b160901da32bfe45a90cfc4bf",
518
+ "language": "MATLAB",
519
+ "lines": 41,
520
+ "truncated": false,
521
+ "block": 3,
522
+ "row": 9934
523
+ },
524
+ {
525
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_clust.m",
526
+ "sha256": "5884df7c8f3f695db7f8b145d02936b3f156d85a509144c6f3a924e0d100bd33",
527
+ "language": "MATLAB",
528
+ "lines": 151,
529
+ "truncated": false,
530
+ "block": 3,
531
+ "row": 13641
532
+ },
533
+ {
534
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_cmtest.m",
535
+ "sha256": "075ecc8523f2fb50a281105b1f920868cb3999c6e9a3031bc8ce7bd980921bee",
536
+ "language": "MATLAB",
537
+ "lines": 90,
538
+ "truncated": false,
539
+ "block": 3,
540
+ "row": 12294
541
+ },
542
+ {
543
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_confmean.m",
544
+ "sha256": "ff5091271c636cc5f584f9e6f799f031eb93cdd6a24e68ee34cd2737d98c259a",
545
+ "language": "MATLAB",
546
+ "lines": 79,
547
+ "truncated": false,
548
+ "block": 3,
549
+ "row": 12243
550
+ },
551
+ {
552
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_corrcc.m",
553
+ "sha256": "75a24ec92bde89f956b7fd7626e5eae9387de13ba1e2e41fdc05d5d5bb9563a6",
554
+ "language": "MATLAB",
555
+ "lines": 53,
556
+ "truncated": false,
557
+ "block": 3,
558
+ "row": 11030
559
+ },
560
+ {
561
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_corrcl.m",
562
+ "sha256": "645048eb556f2b4f67142e3a443331173decfe5b376eb75ed1c35d016050a215",
563
+ "language": "MATLAB",
564
+ "lines": 50,
565
+ "truncated": false,
566
+ "block": 3,
567
+ "row": 10403
568
+ },
569
+ {
570
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_dist.m",
571
+ "sha256": "7f97ca8e18c265518d3588ffdd9dc2affda7977579702befffc389ae23722765",
572
+ "language": "MATLAB",
573
+ "lines": 28,
574
+ "truncated": false,
575
+ "block": 3,
576
+ "row": 9400
577
+ },
578
+ {
579
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_dist2.m",
580
+ "sha256": "7dd64059e0c0cf5ee15eab1670a9950b7f98cd01581849a3dac5aeb8e49728eb",
581
+ "language": "MATLAB",
582
+ "lines": 36,
583
+ "truncated": false,
584
+ "block": 3,
585
+ "row": 9505
586
+ },
587
+ {
588
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_hktest.m",
589
+ "sha256": "6567d33dffc2f4afa3b81445d8b01410c408447bc6cad05a3c12c1f7320e3610",
590
+ "language": "MATLAB",
591
+ "lines": 253,
592
+ "truncated": false,
593
+ "block": 3,
594
+ "row": 15414
595
+ },
596
+ {
597
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_kappa.m",
598
+ "sha256": "9ef0f39abafb5d272598ea5440053b245591ed2d5b0aa329cd7d4fd6a26611f0",
599
+ "language": "MATLAB",
600
+ "lines": 57,
601
+ "truncated": false,
602
+ "block": 3,
603
+ "row": 10617
604
+ },
605
+ {
606
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_ktest.m",
607
+ "sha256": "3c23f806373c31d25f3364f572214f8febe98b46fa35028153630442a3cbef1e",
608
+ "language": "MATLAB",
609
+ "lines": 59,
610
+ "truncated": false,
611
+ "block": 3,
612
+ "row": 10836
613
+ },
614
+ {
615
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_kuipertest.m",
616
+ "sha256": "38a4b6182794282de4573f81a85519ca58eb5033efdd12ba329f5771953ca713",
617
+ "language": "MATLAB",
618
+ "lines": 113,
619
+ "truncated": false,
620
+ "block": 3,
621
+ "row": 13421
622
+ },
623
+ {
624
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_kurtosis.m",
625
+ "sha256": "df6033e3f711037c7aa1da587380fb4e1f815f0389b73e8e42e2fbfa11bd39c9",
626
+ "language": "MATLAB",
627
+ "lines": 51,
628
+ "truncated": false,
629
+ "block": 3,
630
+ "row": 11088
631
+ },
632
+ {
633
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_mean.m",
634
+ "sha256": "4177d65a3dfe5a030e9d96d642ba3396d567fb59c52855ec08e860598dffe511",
635
+ "language": "MATLAB",
636
+ "lines": 56,
637
+ "truncated": false,
638
+ "block": 3,
639
+ "row": 11092
640
+ },
641
+ {
642
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_median.m",
643
+ "sha256": "41dc4a0c4c33efd11e71ae9b13c6c960576d0b0a7651c4e3c096584ed83a511d",
644
+ "language": "MATLAB",
645
+ "lines": 72,
646
+ "truncated": false,
647
+ "block": 3,
648
+ "row": 11032
649
+ },
650
+ {
651
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_medtest.m",
652
+ "sha256": "3c90926bf4de24ad52d890f4928945fa6d184272d5902e67d9f232088e462c71",
653
+ "language": "MATLAB",
654
+ "lines": 46,
655
+ "truncated": false,
656
+ "block": 3,
657
+ "row": 9965
658
+ },
659
+ {
660
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_moment.m",
661
+ "sha256": "1958c5bd090049edf1fd4974e687d66b46c3a0f3bf45a6ae5dc57577e21060f1",
662
+ "language": "MATLAB",
663
+ "lines": 69,
664
+ "truncated": false,
665
+ "block": 3,
666
+ "row": 11403
667
+ },
668
+ {
669
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_mtest.m",
670
+ "sha256": "1db09793c10399b9a027e39ccfd58f2e0993f9f392c091af8b8c4ee2360004d4",
671
+ "language": "MATLAB",
672
+ "lines": 69,
673
+ "truncated": false,
674
+ "block": 3,
675
+ "row": 11671
676
+ },
677
+ {
678
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_otest.m",
679
+ "sha256": "b1727091b84a3fa7a750df9a97aa6ca20aaac250deb36e5f2c92d234c58f870c",
680
+ "language": "MATLAB",
681
+ "lines": 81,
682
+ "truncated": false,
683
+ "block": 3,
684
+ "row": 11928
685
+ },
686
+ {
687
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_plot.m",
688
+ "sha256": "e07f18f13e3ad132d8797f0aaa6b3efe85ccc204b32ad8f5000af11f2ea5295b",
689
+ "language": "MATLAB",
690
+ "lines": 143,
691
+ "truncated": false,
692
+ "block": 3,
693
+ "row": 14074
694
+ },
695
+ {
696
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_r.m",
697
+ "sha256": "122c7dd0e9ef5865f88f81927bdbe3524e12f814a9f60b94bcb7bb7c09050bc5",
698
+ "language": "MATLAB",
699
+ "lines": 62,
700
+ "truncated": false,
701
+ "block": 3,
702
+ "row": 11618
703
+ },
704
+ {
705
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_rad2ang.m",
706
+ "sha256": "cbae827c24eb1791434e12b4aa4487a07d641a0b3b4a8678841448df3aa047f2",
707
+ "language": "MATLAB",
708
+ "lines": 11,
709
+ "truncated": false,
710
+ "block": 3,
711
+ "row": 8516
712
+ },
713
+ {
714
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_raotest.m",
715
+ "sha256": "93f325d814e19b3988ec4db4cc5f65bfda6efbb622c0599a7c925ca1b03b13de",
716
+ "language": "MATLAB",
717
+ "lines": 130,
718
+ "truncated": false,
719
+ "block": 3,
720
+ "row": 14276
721
+ },
722
+ {
723
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_rtest.m",
724
+ "sha256": "6984b1186a766b0cbca58069ecd652d078535f09785dff35b8f3a1a136872460",
725
+ "language": "MATLAB",
726
+ "lines": 75,
727
+ "truncated": false,
728
+ "block": 3,
729
+ "row": 11895
730
+ },
731
+ {
732
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_samplecdf.m",
733
+ "sha256": "7922b62a475e969a26b08ec7c2b8dccb2fac2f09564b541770bea830429c9fac",
734
+ "language": "MATLAB",
735
+ "lines": 74,
736
+ "truncated": false,
737
+ "block": 3,
738
+ "row": 11667
739
+ },
740
+ {
741
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_skewness.m",
742
+ "sha256": "424efdf64f121bc99ee5421952f3c717830cdbd6b819554f712b7db942777e46",
743
+ "language": "MATLAB",
744
+ "lines": 52,
745
+ "truncated": false,
746
+ "block": 3,
747
+ "row": 11079
748
+ },
749
+ {
750
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_stats.m",
751
+ "sha256": "8824024b9ed3aa3fb0f1168a2859ffb7f4f29f7e9125e50c4740a826f8a0a75b",
752
+ "language": "MATLAB",
753
+ "lines": 66,
754
+ "truncated": false,
755
+ "block": 3,
756
+ "row": 10939
757
+ },
758
+ {
759
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_std.m",
760
+ "sha256": "90a13816aa74cc1684039bd7412129d1fc826896deb304c6ae29e3e73cfea6d5",
761
+ "language": "MATLAB",
762
+ "lines": 57,
763
+ "truncated": false,
764
+ "block": 3,
765
+ "row": 11180
766
+ },
767
+ {
768
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_symtest.m",
769
+ "sha256": "801b0f3c00d5003df2e34203e3af5243702d45a843d16ac4861d12200f11684e",
770
+ "language": "MATLAB",
771
+ "lines": 40,
772
+ "truncated": false,
773
+ "block": 3,
774
+ "row": 9661
775
+ },
776
+ {
777
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_var.m",
778
+ "sha256": "fc3087db3cc26ff0a05d500d33112f7936bdf3d14428d911d09b7a24ae7321c6",
779
+ "language": "MATLAB",
780
+ "lines": 57,
781
+ "truncated": false,
782
+ "block": 3,
783
+ "row": 11355
784
+ },
785
+ {
786
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_vmpar.m",
787
+ "sha256": "20dab410e69f4426272a81ba62a044bd1f1cc365d77704e440eb8262b50cbec7",
788
+ "language": "MATLAB",
789
+ "lines": 38,
790
+ "truncated": false,
791
+ "block": 3,
792
+ "row": 9937
793
+ },
794
+ {
795
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_vmpdf.m",
796
+ "sha256": "5cbb5561ef04ec84b620dddc08f1befb82d5828a6e0461d632aed9865023c01d",
797
+ "language": "MATLAB",
798
+ "lines": 46,
799
+ "truncated": false,
800
+ "block": 3,
801
+ "row": 10662
802
+ },
803
+ {
804
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_vmrnd.m",
805
+ "sha256": "f2c02be90d6a2bf8c1d9a05f22c2227b941a6f0fd034cdc844d9ac7473465ae4",
806
+ "language": "MATLAB",
807
+ "lines": 87,
808
+ "truncated": false,
809
+ "block": 3,
810
+ "row": 11444
811
+ },
812
+ {
813
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_vtest.m",
814
+ "sha256": "050cf7ab1a224d296c5f2b57cd1f6c3e129f7a52fc6da9bd019817d88aa8595f",
815
+ "language": "MATLAB",
816
+ "lines": 77,
817
+ "truncated": false,
818
+ "block": 3,
819
+ "row": 12196
820
+ },
821
+ {
822
+ "path": "Single_Unit_Analysis/CircStat2012a/circ_wwtest.m",
823
+ "sha256": "38e63a3ae9629df6c485320024182672c0fa865c659fc973a693ef3512550ae8",
824
+ "language": "MATLAB",
825
+ "lines": 158,
826
+ "truncated": false,
827
+ "block": 3,
828
+ "row": 14622
829
+ },
830
+ {
831
+ "path": "Single_Unit_Analysis/CircStat2012a/examples/example1.m",
832
+ "sha256": "ca8b7f7259c8c233e43e6d61a127b2511a88f09430484cbf7b4552d5c1f8f005",
833
+ "language": "MATLAB",
834
+ "lines": 195,
835
+ "truncated": false,
836
+ "block": 3,
837
+ "row": 15089
838
+ },
839
+ {
840
+ "path": "Single_Unit_Analysis/CircStat2012a/examples/example2.m",
841
+ "sha256": "b2ce3caef5e1c8cd52462fb45ef65c2b4ae35fb6c3980c5c24295f5e150bc904",
842
+ "language": "MATLAB",
843
+ "lines": 156,
844
+ "truncated": false,
845
+ "block": 3,
846
+ "row": 13858
847
+ },
848
+ {
849
+ "path": "Single_Unit_Analysis/CircStat2012a/examples/formatSubplot.m",
850
+ "sha256": "92d14df7684442a5ab2d20fac7e569734906537148dbedcb2d6db0530392a879",
851
+ "language": "MATLAB",
852
+ "lines": 38,
853
+ "truncated": false,
854
+ "block": 3,
855
+ "row": 9412
856
+ },
857
+ {
858
+ "path": "Single_Unit_Analysis/CircStat2012a/examples/parseVarArgs.m",
859
+ "sha256": "1ca3e10d56bad1bdaa0d2443c85c39d10b184217b9564199867ef6110abffcc6",
860
+ "language": "MATLAB",
861
+ "lines": 39,
862
+ "truncated": false,
863
+ "block": 3,
864
+ "row": 10727
865
+ },
866
+ {
867
+ "path": "Single_Unit_Analysis/FilterSpikes_PAP_LV.m",
868
+ "sha256": "ff2e61a950d519da44c93773cb84d71ce29cfe098f4afea3c641b780f21c33b1",
869
+ "language": "MATLAB",
870
+ "lines": 90,
871
+ "truncated": false,
872
+ "block": 3,
873
+ "row": 13620
874
+ },
875
+ {
876
+ "path": "Single_Unit_Analysis/HIPP_SpikeProcessing_LV_all_2023_V3_Aonly.m",
877
+ "sha256": "3ada2989144c1cdec92d2437cf573d783011b24cf9141d95b2ea610bb0f16c90",
878
+ "language": "MATLAB",
879
+ "lines": 1397,
880
+ "truncated": false,
881
+ "block": 3,
882
+ "row": 17224
883
+ },
884
+ {
885
+ "path": "Single_Unit_Analysis/MEC_SpikeProcessing_LV_all_2023_V3_Aonly.m",
886
+ "sha256": "a77926ac2b2a152a8587b7d76ee80d1483c7a3a012fb28326c77cda5d5f248c0",
887
+ "language": "MATLAB",
888
+ "lines": 926,
889
+ "truncated": false,
890
+ "block": 3,
891
+ "row": 17150
892
+ },
893
+ {
894
+ "path": "Single_Unit_Analysis/Precession/afr_helperfunctions/CCG.m",
895
+ "sha256": "29bf9bc913ec1246fd5e0adb680a9e658397c3ab256ac8caae0b24fcb8dd6e3e",
896
+ "language": "MATLAB",
897
+ "lines": 174,
898
+ "truncated": false,
899
+ "block": 3,
900
+ "row": 14981
901
+ },
902
+ {
903
+ "path": "Single_Unit_Analysis/Precession/afr_helperfunctions/Smooth.m",
904
+ "sha256": "dbb423a4b3cfb8c7f05aca77e17ec6076a145413abd538a4c69e4d90b4a5b254",
905
+ "language": "MATLAB",
906
+ "lines": 292,
907
+ "truncated": false,
908
+ "block": 3,
909
+ "row": 16125
910
+ },
911
+ {
912
+ "path": "Single_Unit_Analysis/Precession/afr_helperfunctions/isdscalar.m",
913
+ "sha256": "cb64ed9035de59d72ee5ea7fe41abe5126746b71cab591486a4531eee2a0b29a",
914
+ "language": "MATLAB",
915
+ "lines": 57,
916
+ "truncated": false,
917
+ "block": 3,
918
+ "row": 11366
919
+ },
920
+ {
921
+ "path": "Single_Unit_Analysis/Precession/afr_helperfunctions/isdvector.m",
922
+ "sha256": "d8e2ba580717cd90cdf671c0fb3ac60000a722de7d4e34758f507a97b5b330dc",
923
+ "language": "MATLAB",
924
+ "lines": 72,
925
+ "truncated": false,
926
+ "block": 3,
927
+ "row": 12245
928
+ },
929
+ {
930
+ "path": "Single_Unit_Analysis/Precession/afr_helperfunctions/isiscalar.m",
931
+ "sha256": "f46362420452eb132891b146961d2e278aa9edf324a8cb38150559c91554ef9c",
932
+ "language": "MATLAB",
933
+ "lines": 61,
934
+ "truncated": false,
935
+ "block": 3,
936
+ "row": 11451
937
+ },
938
+ {
939
+ "path": "Single_Unit_Analysis/Precession/afr_helperfunctions/isstring_FMAT.m",
940
+ "sha256": "690e00143760c697932e446fbbdaa0d840fa3aa480f9c7ba0cb988b584d820d8",
941
+ "language": "MATLAB",
942
+ "lines": 42,
943
+ "truncated": false,
944
+ "block": 3,
945
+ "row": 10182
946
+ },
947
+ {
948
+ "path": "Single_Unit_Analysis/Precession/spk_freq.m",
949
+ "sha256": "f411536b96b78aad8e9866d552d8f39c1d061af18c5e73230dfc95ecfa6cc7b6",
950
+ "language": "MATLAB",
951
+ "lines": 337,
952
+ "truncated": false,
953
+ "block": 3,
954
+ "row": 16575
955
+ },
956
+ {
957
+ "path": "Single_Unit_Analysis/SingleUnitProcessing.m",
958
+ "sha256": "1df3a432f83754c4789b6b64b22e3381dc872f3cdc2de948f4819ff141d8fd48",
959
+ "language": "MATLAB",
960
+ "lines": 124,
961
+ "truncated": false,
962
+ "block": 3,
963
+ "row": 15457
964
+ },
965
+ {
966
+ "path": "Single_Unit_Analysis/phaselockunitLV.m",
967
+ "sha256": "4bd50e252dfbed7d5ffc1650500d39ac9734ce3af0823b550c8784cddddfadd6",
968
+ "language": "MATLAB",
969
+ "lines": 60,
970
+ "truncated": false,
971
+ "block": 3,
972
+ "row": 11658
973
+ }
974
+ ]
975
+ }
manifests/0e/github.com__astrogewgaw__powerlawnoise.jl.json ADDED
@@ -0,0 +1,48 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/astrogewgaw/powerlawnoise.jl",
4
+ "url": "https://github.com/astrogewgaw/PowerLawNoise.jl",
5
+ "host": "github.com",
6
+ "commit": "941947a2b834e53bdbab1e94c412912f32e85cf6",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "cc6b0de00316433a620824d0282bf1b4e547f1269852c1c20ba42b6c6b7f70f5",
14
+ "language": "License",
15
+ "lines": 21,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 8079
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "200db93218bafd6ac182fb98382f71198dd2998ebf1b0e725e13168d0d57c440",
23
+ "language": "Text",
24
+ "lines": 46,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2378
28
+ },
29
+ {
30
+ "path": "src/PowerLawNoise.jl",
31
+ "sha256": "c355eee3388470db5d3c4ffbf90eb22c358ba28ca3c80bf8d3c615eaef03aa25",
32
+ "language": "Julia",
33
+ "lines": 46,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 6991
37
+ },
38
+ {
39
+ "path": "test/runtests.jl",
40
+ "sha256": "a8bec47a513898ea9ccf72bb5fc0476a24253d18d01b5bc07503b5468d67a088",
41
+ "language": "Julia",
42
+ "lines": 13,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 6982
46
+ }
47
+ ]
48
+ }
manifests/0e/github.com__codyheadings__acmt.json ADDED
@@ -0,0 +1,138 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/codyheadings/acmt",
4
+ "url": "https://github.com/codyheadings/ACMT",
5
+ "host": "github.com",
6
+ "commit": "4767b41050200453eae3afed5644113fc72f9faf",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "4dcelltrack/analyzeByGroup.m",
13
+ "sha256": "716cb40d5e7d1dc41a0f6837734e137d40c75f125b018326c62354b66da852b9",
14
+ "language": "MATLAB",
15
+ "lines": 405,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 16535
19
+ },
20
+ {
21
+ "path": "4dcelltrack/cellDistances.m",
22
+ "sha256": "bff0d84ac4d45ef8419d1996489ea8cae77b8c2da50320049347c0c47afe017d",
23
+ "language": "MATLAB",
24
+ "lines": 129,
25
+ "truncated": false,
26
+ "block": 3,
27
+ "row": 14512
28
+ },
29
+ {
30
+ "path": "4dcelltrack/cellSpeeds.m",
31
+ "sha256": "65752ce5ed227c24da5ce2ac69e563ed7fa5fdfcd05d8d86e0ce7526c0a06cd5",
32
+ "language": "MATLAB",
33
+ "lines": 142,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 14667
37
+ },
38
+ {
39
+ "path": "4dcelltrack/collectTrackingData.m",
40
+ "sha256": "047d2deb5543812976e9512e67b9fbb3e28a123497a817d170ba0ea588cd89e9",
41
+ "language": "MATLAB",
42
+ "lines": 221,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 15659
46
+ },
47
+ {
48
+ "path": "4dcelltrack/compileResultsCSV.m",
49
+ "sha256": "1712f3a5b8a09c6c98577b2f86d182508ff30c78bec5d2b37ba4ef35b7d983e1",
50
+ "language": "MATLAB",
51
+ "lines": 178,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 15249
55
+ },
56
+ {
57
+ "path": "4dcelltrack/computeMSD.m",
58
+ "sha256": "a83e90926400e6ed9a6e59f8b58d5cb0df95e34801db339a1d5257daa5a0b9db",
59
+ "language": "MATLAB",
60
+ "lines": 104,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 13419
64
+ },
65
+ {
66
+ "path": "4dcelltrack/computeTrackingMetrics.m",
67
+ "sha256": "ec787d4d51749a3fb4dca9578c83f8a1013b646c1d00e71a8ff08fcb031579ed",
68
+ "language": "MATLAB",
69
+ "lines": 200,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 15577
73
+ },
74
+ {
75
+ "path": "4dcelltrack/computeTurningAngles.m",
76
+ "sha256": "3f23b15cdb0f83af24678ad5e00792422f9450e16663690bb2ee5db17df70270",
77
+ "language": "MATLAB",
78
+ "lines": 111,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 13422
82
+ },
83
+ {
84
+ "path": "4dcelltrack/filterDuplicateTracks.m",
85
+ "sha256": "24c85ef7fdc5e1ce6796c87cc0bade7ce2824a59e6f5bfd3b2aa80a7eb9186cd",
86
+ "language": "MATLAB",
87
+ "lines": 337,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 16307
91
+ },
92
+ {
93
+ "path": "4dcelltrack/plotRepresentativeGraphs.m",
94
+ "sha256": "57d93e628592672e8ad9fee3864e689d008ccd3890d65f896c2aeaeacaba2b78",
95
+ "language": "MATLAB",
96
+ "lines": 251,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 15743
100
+ },
101
+ {
102
+ "path": "4dcelltrack/preProcessND2.m",
103
+ "sha256": "232cfc1a0f93c7bcf08a8935f96632cde35b4612f80a6fa59843364413983d4b",
104
+ "language": "MATLAB",
105
+ "lines": 196,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 15007
109
+ },
110
+ {
111
+ "path": "4dcelltrack/segmentTracks.m",
112
+ "sha256": "0e1d762454dd379fb391cbdbce92d2625181aaaffe140da760fb82744c309eb6",
113
+ "language": "MATLAB",
114
+ "lines": 22,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 9409
118
+ },
119
+ {
120
+ "path": "LICENSE",
121
+ "sha256": "c468672304295c836aa6e7198185abeeac31beae1a6085e358981f49ab9460b3",
122
+ "language": "License",
123
+ "lines": 21,
124
+ "truncated": false,
125
+ "block": 3,
126
+ "row": 7993
127
+ },
128
+ {
129
+ "path": "README.md",
130
+ "sha256": "3686671ff77bbdba922ddc7619cb3fe92073f73285ec2246e18e6469160c5619",
131
+ "language": "Text",
132
+ "lines": 133,
133
+ "truncated": false,
134
+ "block": 4,
135
+ "row": 2571
136
+ }
137
+ ]
138
+ }
manifests/0e/github.com__han-yy__neuralmarkerpain.json ADDED
@@ -0,0 +1,444 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/han-yy/neuralmarkerpain",
4
+ "url": "https://github.com/han-yy/NeuralMarkerPain",
5
+ "host": "github.com",
6
+ "commit": "5036c1fbb5c940780e1e1d6f796724c91894e502",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "EEGfilter.m",
13
+ "sha256": "45fe24e0cb1c7540c3f95941bd6208560e8432a61e4ec5bf670ff47c52e7af81",
14
+ "language": "MATLAB",
15
+ "lines": 49,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 12121
19
+ },
20
+ {
21
+ "path": "FeatureExtra.m",
22
+ "sha256": "85885337f1ab549d64e533eded5ba999dc4b5233dfeb50d7a6c80d180633d761",
23
+ "language": "MATLAB",
24
+ "lines": 40,
25
+ "truncated": false,
26
+ "block": 3,
27
+ "row": 10812
28
+ },
29
+ {
30
+ "path": "FinalTestMix.m",
31
+ "sha256": "4edfe435908379cd934a8629fa1cb3d871973b3473ffc8879283a103d703cfa9",
32
+ "language": "MATLAB",
33
+ "lines": 90,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 13334
37
+ },
38
+ {
39
+ "path": "LICENSE",
40
+ "sha256": "82395c10876832effa932066d07790fa397b51fad7fd73893b3d12a08b93ed8a",
41
+ "language": "License",
42
+ "lines": 21,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 7962
46
+ },
47
+ {
48
+ "path": "Main.m",
49
+ "sha256": "021247fe4f140c1d4a64c8ad7e43fc444d5238a40ead715e8b6dc2c8bea164d3",
50
+ "language": "MATLAB",
51
+ "lines": 36,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 11683
55
+ },
56
+ {
57
+ "path": "MultiClassControl.m",
58
+ "sha256": "2c0e1dcda29a6176c6cc257e0e72f3eef160411ff397db951281cb7c59fbf3db",
59
+ "language": "MATLAB",
60
+ "lines": 117,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 14347
64
+ },
65
+ {
66
+ "path": "PlotAccuracy.m",
67
+ "sha256": "d5521bbf3fa5a014d55f87588c7989e988a6ea47c81af7253c089a2519809515",
68
+ "language": "MATLAB",
69
+ "lines": 32,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 11126
73
+ },
74
+ {
75
+ "path": "PlotPhaConAccuracy.m",
76
+ "sha256": "c4064699a512ec3608780be2bce264a5423a22a9731001bbfa210b1229214c8c",
77
+ "language": "MATLAB",
78
+ "lines": 48,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 11738
82
+ },
83
+ {
84
+ "path": "PlotTime.m",
85
+ "sha256": "23ef35282ba69a83752e9386841826a68694330b6ab46e9bcce7d0d792e01e8f",
86
+ "language": "MATLAB",
87
+ "lines": 30,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 10499
91
+ },
92
+ {
93
+ "path": "README.md",
94
+ "sha256": "8faf463478f3fcef6c70502d57bd3545fa0a42b30cca632a821b6b86f902854c",
95
+ "language": "Text",
96
+ "lines": 2,
97
+ "truncated": false,
98
+ "block": 4,
99
+ "row": 2290
100
+ },
101
+ {
102
+ "path": "binaryClass.m",
103
+ "sha256": "ecd2ccd76f49e4c492cbe0ee37986d10af544c5555106e2da1f2a10431fe8091",
104
+ "language": "MATLAB",
105
+ "lines": 113,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 14256
109
+ },
110
+ {
111
+ "path": "binaryClassCFC.m",
112
+ "sha256": "4d28d3e152f7aabd0ab656b73e506b68eae4833f1d411ddc2d5501d48ff8a94d",
113
+ "language": "MATLAB",
114
+ "lines": 95,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 13590
118
+ },
119
+ {
120
+ "path": "binaryClassTest.m",
121
+ "sha256": "970df4f66d1be3820fb657c7d442bf82f3c8947c9031359dd48fc145d1635fc0",
122
+ "language": "MATLAB",
123
+ "lines": 145,
124
+ "truncated": false,
125
+ "block": 3,
126
+ "row": 14803
127
+ },
128
+ {
129
+ "path": "binaryClassTestMix.m",
130
+ "sha256": "8fd2c5d9fa37f4338cc6c62f1fc8857160537b50696bdb4b60109b3099d6e2af",
131
+ "language": "MATLAB",
132
+ "lines": 164,
133
+ "truncated": false,
134
+ "block": 3,
135
+ "row": 15217
136
+ },
137
+ {
138
+ "path": "getBinaryClassifiers.m",
139
+ "sha256": "71129ca0cbaea16570e3ca82f9da69a6bb090486f71413e3e1f643845260923b",
140
+ "language": "MATLAB",
141
+ "lines": 11,
142
+ "truncated": false,
143
+ "block": 3,
144
+ "row": 8706
145
+ },
146
+ {
147
+ "path": "getBinaryClassifiersCFC.m",
148
+ "sha256": "cb62c06bef5b7f0a9b00ec1e760e5a2b3a358fe1542c094a9a622e5ac743ac97",
149
+ "language": "MATLAB",
150
+ "lines": 16,
151
+ "truncated": false,
152
+ "block": 3,
153
+ "row": 9050
154
+ },
155
+ {
156
+ "path": "getBinaryClassifiersTest.m",
157
+ "sha256": "aac59051365ef57717a407c0a4bb88c8341f9ffa6a5820074551d3dbe1881263",
158
+ "language": "MATLAB",
159
+ "lines": 11,
160
+ "truncated": false,
161
+ "block": 3,
162
+ "row": 8539
163
+ },
164
+ {
165
+ "path": "getBinaryClassifiersTestMix.m",
166
+ "sha256": "0b964a288164c5630b896910a35c16d49ef13068cf9d0a74553292689f8eda96",
167
+ "language": "MATLAB",
168
+ "lines": 13,
169
+ "truncated": false,
170
+ "block": 3,
171
+ "row": 8949
172
+ },
173
+ {
174
+ "path": "getBinaryClassifiersTestTime.m",
175
+ "sha256": "707581482ebf5efe5da504a35710ecf87bd1358a08fa9536d487775810250b50",
176
+ "language": "MATLAB",
177
+ "lines": 11,
178
+ "truncated": false,
179
+ "block": 3,
180
+ "row": 8752
181
+ },
182
+ {
183
+ "path": "getCOHCFC.m",
184
+ "sha256": "ac9fe5b48062013f9db711f6a99db54706effe5cd2aa42c7733832fd675379c1",
185
+ "language": "MATLAB",
186
+ "lines": 66,
187
+ "truncated": false,
188
+ "block": 3,
189
+ "row": 12896
190
+ },
191
+ {
192
+ "path": "getCOHCFCchannelTime.m",
193
+ "sha256": "6649874539df6fa5a08b32871b3992f60a357db64141fd01330581c7548d2024",
194
+ "language": "MATLAB",
195
+ "lines": 44,
196
+ "truncated": false,
197
+ "block": 3,
198
+ "row": 11011
199
+ },
200
+ {
201
+ "path": "getCOHchannelTime.m",
202
+ "sha256": "852c3f73e4e894e15f3fc92809006b376a3775f01fe0fee827646cebba9569b8",
203
+ "language": "MATLAB",
204
+ "lines": 38,
205
+ "truncated": false,
206
+ "block": 3,
207
+ "row": 10253
208
+ },
209
+ {
210
+ "path": "getConnMap.m",
211
+ "sha256": "d1a3170e674c4a08c15593a15ad7c005761008f15ef122098094d7ac6d650a52",
212
+ "language": "MATLAB",
213
+ "lines": 54,
214
+ "truncated": false,
215
+ "block": 3,
216
+ "row": 13058
217
+ },
218
+ {
219
+ "path": "getEEGmap.m",
220
+ "sha256": "e7893e63cb905f5e5bc824f8a9984b6194b6a27ea56520c08e9c394c6d22edd8",
221
+ "language": "MATLAB",
222
+ "lines": 59,
223
+ "truncated": false,
224
+ "block": 3,
225
+ "row": 11865
226
+ },
227
+ {
228
+ "path": "getEEGmapCFC.m",
229
+ "sha256": "c2b4f71a3f4ea3ef2383192ab01071b7df8c20c6a569864efe69a2fd34bc2262",
230
+ "language": "MATLAB",
231
+ "lines": 39,
232
+ "truncated": false,
233
+ "block": 3,
234
+ "row": 11472
235
+ },
236
+ {
237
+ "path": "getFeatureLabel.m",
238
+ "sha256": "21bc1e8c56a01e2f1c7cd4395a04b7d321a4f50d1d3ee95f2cb75e51e17a43e7",
239
+ "language": "MATLAB",
240
+ "lines": 202,
241
+ "truncated": false,
242
+ "block": 3,
243
+ "row": 15984
244
+ },
245
+ {
246
+ "path": "getISPCCFC.m",
247
+ "sha256": "8e4037456cc8260242bbe3ce0ac0f2a35d7cef2e4983f417388621991f93ad72",
248
+ "language": "MATLAB",
249
+ "lines": 63,
250
+ "truncated": false,
251
+ "block": 3,
252
+ "row": 12617
253
+ },
254
+ {
255
+ "path": "getISPCCFCchannelTime.m",
256
+ "sha256": "113a72bc01bc9a3ddae88c249b894d4038660ed69563409ca14b23a3674f35d1",
257
+ "language": "MATLAB",
258
+ "lines": 34,
259
+ "truncated": false,
260
+ "block": 3,
261
+ "row": 9903
262
+ },
263
+ {
264
+ "path": "getISPCchannelTime.m",
265
+ "sha256": "322ed97dc1cf3fc4e7ab559e584c8572b180f5ab743d469f48ddfd9092ea532a",
266
+ "language": "MATLAB",
267
+ "lines": 39,
268
+ "truncated": false,
269
+ "block": 3,
270
+ "row": 10107
271
+ },
272
+ {
273
+ "path": "getNumWeights.m",
274
+ "sha256": "964cf9122b5b7a26a63b1d1c77d54b4da51fa0209c1763937b837c84014c8549",
275
+ "language": "MATLAB",
276
+ "lines": 44,
277
+ "truncated": false,
278
+ "block": 3,
279
+ "row": 11206
280
+ },
281
+ {
282
+ "path": "innerCOHBinclass.m",
283
+ "sha256": "b7caded6db67e102a7006e138a67014643bef62d51cfaace7f7ab6fd168e10ba",
284
+ "language": "MATLAB",
285
+ "lines": 46,
286
+ "truncated": false,
287
+ "block": 3,
288
+ "row": 11439
289
+ },
290
+ {
291
+ "path": "innerISPCBinclass.m",
292
+ "sha256": "9fe4397ad07995c9f405a31f3c59bca2642af03f47bf8135d6b8b6e94391d1ec",
293
+ "language": "MATLAB",
294
+ "lines": 65,
295
+ "truncated": false,
296
+ "block": 3,
297
+ "row": 12709
298
+ },
299
+ {
300
+ "path": "interCFCBinclass.m",
301
+ "sha256": "1f0219b91af083cd17d0f533b6b4f5fe1683564690cbd56c73f4813873105274",
302
+ "language": "MATLAB",
303
+ "lines": 42,
304
+ "truncated": false,
305
+ "block": 3,
306
+ "row": 11007
307
+ },
308
+ {
309
+ "path": "interCOHBinclass.m",
310
+ "sha256": "caab12c7a03db9b266bff8eb788be2d6a659f391a5b8ecfc199417b7c8cfadba",
311
+ "language": "MATLAB",
312
+ "lines": 66,
313
+ "truncated": false,
314
+ "block": 3,
315
+ "row": 12788
316
+ },
317
+ {
318
+ "path": "interISPCBinclass.m",
319
+ "sha256": "059b74c00c1ce18e67c5fd1cf9149865f5c77d1f49e75c821e4a55e9ebae4866",
320
+ "language": "MATLAB",
321
+ "lines": 79,
322
+ "truncated": false,
323
+ "block": 3,
324
+ "row": 13378
325
+ },
326
+ {
327
+ "path": "multiClassCFC.m",
328
+ "sha256": "c453e3b0188724bd5a62d94578c1205f6be528ae35605ff165a603f4f0c85a9a",
329
+ "language": "MATLAB",
330
+ "lines": 94,
331
+ "truncated": false,
332
+ "block": 3,
333
+ "row": 13877
334
+ },
335
+ {
336
+ "path": "multiClassPar.m",
337
+ "sha256": "ab551dac78f6644a448da4cd01e79c2ec24c0aa9408e355a452c5385633219fd",
338
+ "language": "MATLAB",
339
+ "lines": 117,
340
+ "truncated": false,
341
+ "block": 3,
342
+ "row": 14747
343
+ },
344
+ {
345
+ "path": "plotAccuracyGroup.m",
346
+ "sha256": "a04d61b2ffc8a59eff1a24a458978eab590de59f9b57624d65362a9b9c9923c9",
347
+ "language": "MATLAB",
348
+ "lines": 46,
349
+ "truncated": false,
350
+ "block": 3,
351
+ "row": 11867
352
+ },
353
+ {
354
+ "path": "plotConnMap.m",
355
+ "sha256": "65ea11af45ed310b97820a667aecd29fab54da68632428e92d76bf46d3bb00bd",
356
+ "language": "MATLAB",
357
+ "lines": 35,
358
+ "truncated": false,
359
+ "block": 3,
360
+ "row": 11554
361
+ },
362
+ {
363
+ "path": "plotFeatureRatio.m",
364
+ "sha256": "eda4c25c780cf82ce5fd333d51140587f5ddb216d96334d7ed8e76f065f32b40",
365
+ "language": "MATLAB",
366
+ "lines": 64,
367
+ "truncated": false,
368
+ "block": 3,
369
+ "row": 12936
370
+ },
371
+ {
372
+ "path": "plotFinalConnMap.m",
373
+ "sha256": "bd6f60331eb7f6ec4cc22283a422e28da47cc72dc859622499d1981bf7b895a5",
374
+ "language": "MATLAB",
375
+ "lines": 87,
376
+ "truncated": false,
377
+ "block": 3,
378
+ "row": 14206
379
+ },
380
+ {
381
+ "path": "plotNodes.m",
382
+ "sha256": "832488287ff3818a5ec450c8eaad36ef6e2f130ffffd15a07f7fdb8f4b4dabdd",
383
+ "language": "MATLAB",
384
+ "lines": 16,
385
+ "truncated": false,
386
+ "block": 3,
387
+ "row": 9363
388
+ },
389
+ {
390
+ "path": "plotPhaConnCurve.m",
391
+ "sha256": "5375e07b7e44197d0e9415f273410541689abcd068081113c762558ca3e43cfc",
392
+ "language": "MATLAB",
393
+ "lines": 48,
394
+ "truncated": false,
395
+ "block": 3,
396
+ "row": 12458
397
+ },
398
+ {
399
+ "path": "plotPhaseConnMap.m",
400
+ "sha256": "458065d50f6a4bb4e324eb3acd8ea904e408f5b0175edf1c3edb5a3f5328e7a7",
401
+ "language": "MATLAB",
402
+ "lines": 125,
403
+ "truncated": false,
404
+ "block": 3,
405
+ "row": 14870
406
+ },
407
+ {
408
+ "path": "plotRunTime.m",
409
+ "sha256": "833bcb6e1fb298421290b6f31eb98564aa9fdf237ecf4958f4e9974e3e6ee586",
410
+ "language": "MATLAB",
411
+ "lines": 48,
412
+ "truncated": false,
413
+ "block": 3,
414
+ "row": 12340
415
+ },
416
+ {
417
+ "path": "plotTimeOnly.m",
418
+ "sha256": "77fa515a8e6bf06693fc13cc8c6032f62cbb35970d7614f17bc4a584394f6348",
419
+ "language": "MATLAB",
420
+ "lines": 44,
421
+ "truncated": false,
422
+ "block": 3,
423
+ "row": 12119
424
+ },
425
+ {
426
+ "path": "plotTopo.m",
427
+ "sha256": "6525cf718bec769f29d6b6f9260a46e876e3139ace0e6586aca38ac5768e5016",
428
+ "language": "MATLAB",
429
+ "lines": 92,
430
+ "truncated": false,
431
+ "block": 3,
432
+ "row": 13512
433
+ },
434
+ {
435
+ "path": "swapTest.m",
436
+ "sha256": "e6cc27ae97f74695daa86a057ceab3e108a41e2345131647f9cfc3e66cc4189d",
437
+ "language": "MATLAB",
438
+ "lines": 31,
439
+ "truncated": false,
440
+ "block": 3,
441
+ "row": 10208
442
+ }
443
+ ]
444
+ }
manifests/0f/github.com__husonlab__mulan-methyl.json ADDED
@@ -0,0 +1,66 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/husonlab/mulan-methyl",
4
+ "url": "https://github.com/husonlab/mulan-methyl",
5
+ "host": "github.com",
6
+ "commit": "638940ae264737086f7357360833fe696c79513d",
7
+ "license": "Apache-2.0",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "c71d239df91726fc519c6eb72d318ec65820627232b2f796219e87dcf35d0ab4",
14
+ "language": "License",
15
+ "lines": 201,
16
+ "truncated": false,
17
+ "block": 1,
18
+ "row": 2216
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "da8301ab9196b4bceb94988ffd0e62558eae469b73594d27d42f4b9442cf8ec4",
23
+ "language": "Text",
24
+ "lines": 117,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2582
28
+ },
29
+ {
30
+ "path": "code/data_processor.py",
31
+ "sha256": "b4666cc08cc72843201c3409110e6ecc53e9c596411d00389793ac5a04b97640",
32
+ "language": "Python",
33
+ "lines": 185,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 24624
37
+ },
38
+ {
39
+ "path": "code/main.py",
40
+ "sha256": "6717258ebdb09cc300b168e3b4589bc6d2c42a94c7fb1f470da56e5006adeaa0",
41
+ "language": "Python",
42
+ "lines": 61,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 22228
46
+ },
47
+ {
48
+ "path": "code/run_evaluate.py",
49
+ "sha256": "f9bab035f5b5c4f5536ef892b3d6732ae5ce1216b23131590636be91fc34e8b5",
50
+ "language": "Python",
51
+ "lines": 175,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 24749
55
+ },
56
+ {
57
+ "path": "code/run_finetune.py",
58
+ "sha256": "90e2cec385b746c7820242bb61db6d7a60a3b7c9c996643b25559da134eba38b",
59
+ "language": "Python",
60
+ "lines": 146,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 24029
64
+ }
65
+ ]
66
+ }
manifests/0f/github.com__superbianc__scmulan.json ADDED
@@ -0,0 +1,138 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/superbianc/scmulan",
4
+ "url": "https://github.com/SuperBianC/scMulan",
5
+ "host": "github.com",
6
+ "commit": "d64da5ed91fd3c730c4c975e898e5e5cc360d872",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "cf5d8a31ee80efe77ea9d760ca422f17e84b87403ffc2321df3876e1affbe2f5",
14
+ "language": "License",
15
+ "lines": 21,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 7994
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "622f51026d1f9cf37a3c96283718bb97f9e69fe3be53df83eca8493ae7cccfd7",
23
+ "language": "Text",
24
+ "lines": 39,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2373
28
+ },
29
+ {
30
+ "path": "Tutorial-cell_type_annotation.ipynb",
31
+ "sha256": "3897b3081caf3c7ac33ef11d6985a7b05fa0c9dbbb0a95a56edbcfb3422ba9e8",
32
+ "language": "Jupyter",
33
+ "lines": 111,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 7241
37
+ },
38
+ {
39
+ "path": "Tutorial-integration.ipynb",
40
+ "sha256": "f68cf193b6da4cfd366078fc1ac5f881575fca7129850f7ae4e6cd3d75c604e3",
41
+ "language": "Jupyter",
42
+ "lines": 107,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 7176
46
+ },
47
+ {
48
+ "path": "inference_cuda.py",
49
+ "sha256": "34b0413d06b1e9987497e0ab8e9370596222a3fa9f2df8f0ce34758f97a6c948",
50
+ "language": "Python",
51
+ "lines": 23,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 19084
55
+ },
56
+ {
57
+ "path": "inference_npu.py",
58
+ "sha256": "7e241731eb57146f0bf756fe7be43bb5baf77ea359158eb2fabe88d78aa80646",
59
+ "language": "Python",
60
+ "lines": 23,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 18997
64
+ },
65
+ {
66
+ "path": "scMulan/__init__.py",
67
+ "sha256": "5e9bfb537673c7d1492c211b16ad12b70b3a1fd257d18f6dd4402270b2a1149b",
68
+ "language": "Python",
69
+ "lines": 7,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 18161
73
+ },
74
+ {
75
+ "path": "scMulan/model/model.py",
76
+ "sha256": "18bf5f09c22036a0032dd046d30bdea5ca8306036b3b8919897a61d669206670",
77
+ "language": "Python",
78
+ "lines": 228,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 24704
82
+ },
83
+ {
84
+ "path": "scMulan/model/model_kvcache.py",
85
+ "sha256": "2b686a1bedf6180f3959f837e7cfc9ad2a13e1d44b23055f3d50f67a08dd17e3",
86
+ "language": "Python",
87
+ "lines": 253,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 25277
91
+ },
92
+ {
93
+ "path": "scMulan/reference/GeneSymbolUniform/pyGSUni.py",
94
+ "sha256": "634c3e512c4274ac29ce7c2ccf29e5a5603de1d4a7bffe51f3eb76fd70a993c5",
95
+ "language": "Python",
96
+ "lines": 313,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 26420
100
+ },
101
+ {
102
+ "path": "scMulan/scMulan.py",
103
+ "sha256": "a2302b46b3952d1a3772369874d4092d26753f35c6352d47cdf20f5bbc664d8b",
104
+ "language": "Python",
105
+ "lines": 315,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 26445
109
+ },
110
+ {
111
+ "path": "scMulan/scMulan_npu.py",
112
+ "sha256": "b66cb4bd68a759734abd0fe1c5a96bf58b221b8e3d68d6077d88b69cc8d1cf20",
113
+ "language": "Python",
114
+ "lines": 317,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 26431
118
+ },
119
+ {
120
+ "path": "scMulan/utils/hf_tokenizer.py",
121
+ "sha256": "cb51fa607a8d43f109cd733c050167db6d972695ffdf03444c62b6dd4a4cb22d",
122
+ "language": "Python",
123
+ "lines": 29,
124
+ "truncated": false,
125
+ "block": 3,
126
+ "row": 18760
127
+ },
128
+ {
129
+ "path": "scMulan/utils/utils.py",
130
+ "sha256": "e2399cafb08c221dafa02bc30ff7a4db4e258a16bc940aa1eba4b46db53c408d",
131
+ "language": "Python",
132
+ "lines": 79,
133
+ "truncated": false,
134
+ "block": 3,
135
+ "row": 22191
136
+ }
137
+ ]
138
+ }
manifests/0f/zenodo__21287687.json ADDED
@@ -0,0 +1,147 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "zenodo:21287687",
4
+ "url": "https://doi.org/10.5281/zenodo.21287687",
5
+ "host": "zenodo.org",
6
+ "commit": "",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "0fed32ae072c4566df51b33d433f2015a1e0eaa7621b305abba52b32d9c002a7",
14
+ "language": "License",
15
+ "lines": 21,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 8018
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "abe69d9f61e881e91e87c53786c7b6e10b84b46197b642b47f9be7fe4d58a4ad",
23
+ "language": "Text",
24
+ "lines": 108,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2593
28
+ },
29
+ {
30
+ "path": "analyze_ablation_stats.py",
31
+ "sha256": "9b39cc6e4968de563f065bd9ca0b3fba9065f5b8ed384ae636eca7ea0aa9ecfb",
32
+ "language": "Python",
33
+ "lines": 128,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 23268
37
+ },
38
+ {
39
+ "path": "analyze_mechanism.py",
40
+ "sha256": "75acf61854066bce21a1cc421e7e80a6fe77296dbe4bc2bf92d40486d4cd9032",
41
+ "language": "Python",
42
+ "lines": 112,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 22597
46
+ },
47
+ {
48
+ "path": "analyze_noise_metrics.py",
49
+ "sha256": "b2cb98b18f7aebceb1e73c0ea1fc78640d87f38c4d985c6995da592c79e1b1d4",
50
+ "language": "Python",
51
+ "lines": 160,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 23708
55
+ },
56
+ {
57
+ "path": "determine_orientations.py",
58
+ "sha256": "8105aeec4be1a99eb67e6c8969923a41d55ec43021ac3ed16bb8b160ad94a9e3",
59
+ "language": "Python",
60
+ "lines": 116,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 22856
64
+ },
65
+ {
66
+ "path": "generate_chaos_signals.py",
67
+ "sha256": "439fa45bf67ae5834115e4468bc90481c23da272ce40192a0d9cc37a2d9bf1c5",
68
+ "language": "Python",
69
+ "lines": 171,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 23255
73
+ },
74
+ {
75
+ "path": "generate_fig3_noise_robustness_data.py",
76
+ "sha256": "15b1350aa67f2f9daadc9ff3698802d3b99087fd855709fb1fc272b846c9ea7a",
77
+ "language": "Python",
78
+ "lines": 235,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 24796
82
+ },
83
+ {
84
+ "path": "generate_fig4_dropout_robustness_data.py",
85
+ "sha256": "fbea81b2e665eb84979723ba796c13455f7c987e34b014a582c4aa1f607daecf",
86
+ "language": "Python",
87
+ "lines": 319,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 26085
91
+ },
92
+ {
93
+ "path": "make_fig2.py",
94
+ "sha256": "d74c88489cf0e7b60aa13d776c09c4372d9b7dc5dd2a67d87b6ddff444d86224",
95
+ "language": "Python",
96
+ "lines": 223,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 23928
100
+ },
101
+ {
102
+ "path": "plot_dropout_robustness_from_saved.py",
103
+ "sha256": "27e55ed9d74b0f59269a805302549e8693955bb69f27b2ed3786b71465849e3c",
104
+ "language": "Python",
105
+ "lines": 197,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 23272
109
+ },
110
+ {
111
+ "path": "plot_fig3_noise_robustness.py",
112
+ "sha256": "467b13ba914c15871b5f4343585836145c49fbc2463547fdbe34e168536a8e69",
113
+ "language": "Python",
114
+ "lines": 186,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 23341
118
+ },
119
+ {
120
+ "path": "run_smoke_test.sh",
121
+ "sha256": "99eff56ea0c10c699caff7ea08eedec9f616ade5cb480c1a725d59d402204c09",
122
+ "language": "Shell",
123
+ "lines": 216,
124
+ "truncated": false,
125
+ "block": 4,
126
+ "row": 2195
127
+ },
128
+ {
129
+ "path": "select_accepted_models.py",
130
+ "sha256": "356ca508e660b62c7779d3d65cb712bbaa38b7dd4d55a05d16799db5ef7f0456",
131
+ "language": "Python",
132
+ "lines": 162,
133
+ "truncated": false,
134
+ "block": 3,
135
+ "row": 23790
136
+ },
137
+ {
138
+ "path": "train_and_save_models.py",
139
+ "sha256": "129cb8bdc1b6b74260d2edebfee3dcd396ff2f62627d0a26ac1d98dd7e38885a",
140
+ "language": "Python",
141
+ "lines": 576,
142
+ "truncated": false,
143
+ "block": 3,
144
+ "row": 27145
145
+ }
146
+ ]
147
+ }
manifests/0f/zenodo__21476369.json ADDED
@@ -0,0 +1,147 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "zenodo:21476369",
4
+ "url": "10.5281/zenodo.21476369",
5
+ "host": "zenodo.org",
6
+ "commit": "",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "6882797c8e52cd81534ab395f1f2dad434978581e445982fa80ae13eba90e74f",
14
+ "language": "License",
15
+ "lines": 21,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 8096
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "08bef13d8b5f138d27079495fe4e0cc33eb40e474794740cd963771d576b220b",
23
+ "language": "Text",
24
+ "lines": 86,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2505
28
+ },
29
+ {
30
+ "path": "scripts/demo.py",
31
+ "sha256": "1852ec97eec95469e1e8de0241ca07ed61cbb28613fe34e8e48d90a6b90d205e",
32
+ "language": "Python",
33
+ "lines": 50,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 20312
37
+ },
38
+ {
39
+ "path": "scripts/run_embedding_sim.py",
40
+ "sha256": "9bc80b89474758f95fef1eadc1ddac0a76b56a5ad49e9ba547d07a54f395332c",
41
+ "language": "Python",
42
+ "lines": 48,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 19774
46
+ },
47
+ {
48
+ "path": "scripts/run_neural_pattern_sim.py",
49
+ "sha256": "46bf84258fdb9f094fbc694dd77a43a75c3f7629f0a80c4b97cebd5c961003d4",
50
+ "language": "Python",
51
+ "lines": 108,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 22097
55
+ },
56
+ {
57
+ "path": "scripts/run_neurosynth.py",
58
+ "sha256": "46c64b73387689021d09a67969f3b6c06ddbdfea7f061db097bca97bbe97cf86",
59
+ "language": "Python",
60
+ "lines": 99,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 22251
64
+ },
65
+ {
66
+ "path": "src/patternsim/__init__.py",
67
+ "sha256": "44d64e211302deb89d61f5f989cf60cd64fcb601cdeaaf643f940cf03d4d9d48",
68
+ "language": "Python",
69
+ "lines": 16,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 18647
73
+ },
74
+ {
75
+ "path": "src/patternsim/config.py",
76
+ "sha256": "e9943eb7bae83d2a460b5c639b27caf0f3b94ec84d0d1123e60059d25c8f287e",
77
+ "language": "Python",
78
+ "lines": 117,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 22022
82
+ },
83
+ {
84
+ "path": "src/patternsim/data_access.py",
85
+ "sha256": "7119bfc90812deb35386e6130f85a7b5e4e47fe8a9f742991b9696e519df5c2c",
86
+ "language": "Python",
87
+ "lines": 176,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 23897
91
+ },
92
+ {
93
+ "path": "src/patternsim/embedding_similarity.py",
94
+ "sha256": "515d1c57d7226de4eb7fcb98ac77bc12b6909fd677dee4b534e072cf900c3c1b",
95
+ "language": "Python",
96
+ "lines": 64,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 20912
100
+ },
101
+ {
102
+ "path": "src/patternsim/io_hdf5.py",
103
+ "sha256": "c323c976a3c14a7bf1203bb6fb6ef77c83a3ff8d7e74a2721520ac00ad94ef36",
104
+ "language": "Python",
105
+ "lines": 81,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 21839
109
+ },
110
+ {
111
+ "path": "src/patternsim/neurosynth.py",
112
+ "sha256": "047ea6a6dbe91e3906997a0163e46b4e966e91e4984754ea359e5a48172d8b9b",
113
+ "language": "Python",
114
+ "lines": 59,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 20767
118
+ },
119
+ {
120
+ "path": "src/patternsim/pattern_similarity.py",
121
+ "sha256": "724424dd53d9f3d76aa695f93ddcf13d4598e21f097925f10ef73935ea82d623",
122
+ "language": "Python",
123
+ "lines": 354,
124
+ "truncated": false,
125
+ "block": 3,
126
+ "row": 26586
127
+ },
128
+ {
129
+ "path": "src/patternsim/stats.py",
130
+ "sha256": "8fd779d13ec0dbd8c1d94770603985dd16bf1bf0e999addfd143fe186b03228d",
131
+ "language": "Python",
132
+ "lines": 100,
133
+ "truncated": false,
134
+ "block": 3,
135
+ "row": 22306
136
+ },
137
+ {
138
+ "path": "tests/test_smoke.py",
139
+ "sha256": "07f90b1cc44e09fd4737d278c9897ac6136f0ddd15d152c502bf387555de7036",
140
+ "language": "Python",
141
+ "lines": 76,
142
+ "truncated": false,
143
+ "block": 3,
144
+ "row": 20964
145
+ }
146
+ ]
147
+ }
manifests/10/github.com__alexdobin__star.json ADDED
@@ -0,0 +1,2991 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/alexdobin/star",
4
+ "url": "https://github.com/alexdobin/STAR",
5
+ "host": "github.com",
6
+ "commit": "b1edc1208d91a53bf40ebae8669f71d50b994851",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "551e5bc4f91bf85b75c848aabba5acbcff4f4adf75e606cd17787038a155e69f",
14
+ "language": "License",
15
+ "lines": 21,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 8023
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "702eb50c9aa3e0ab3a8bcd251eca90ab8dd4cf3833d9bcdf25db218ce669e3e3",
23
+ "language": "Text",
24
+ "lines": 115,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2486
28
+ },
29
+ {
30
+ "path": "extras/scripts/extractSJfromGTF.sh",
31
+ "sha256": "356b312af0e585f87f6596f3771f70e3fdd707024d96feeccaffc72d08522086",
32
+ "language": "Shell",
33
+ "lines": 10,
34
+ "truncated": false,
35
+ "block": 4,
36
+ "row": 1393
37
+ },
38
+ {
39
+ "path": "extras/scripts/sjMotif.m",
40
+ "sha256": "4e1ea6d0c0c148099ad2b49b1d2d9e4e7564a94684e92873e9394294f7dd4ce1",
41
+ "language": "MATLAB",
42
+ "lines": 45,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 10158
46
+ },
47
+ {
48
+ "path": "source/AlignVsTranscript.h",
49
+ "sha256": "c3713f7dfff0f2e66c38170cdae17cdc8bad257f55b507f9d113dc1e22ba8148",
50
+ "language": "C/C++",
51
+ "lines": 9,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 3334
55
+ },
56
+ {
57
+ "path": "source/BAMbinSortByCoordinate.cpp",
58
+ "sha256": "c6db83dea84586227b9c33455f044a14bc4c071598bcfdb13f9d14ce55d257ff",
59
+ "language": "C++",
60
+ "lines": 81,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 2255
64
+ },
65
+ {
66
+ "path": "source/BAMbinSortByCoordinate.h",
67
+ "sha256": "f42323a77e39386c9e93da9818c274e2a8947c318aba19f39f677169a4fedc68",
68
+ "language": "C/C++",
69
+ "lines": 12,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 3382
73
+ },
74
+ {
75
+ "path": "source/BAMbinSortUnmapped.cpp",
76
+ "sha256": "ed4bf4e1866f89fb69f3293346da6e6a5eca685f48d7abbfeb091fdcf6476853",
77
+ "language": "C++",
78
+ "lines": 91,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 2345
82
+ },
83
+ {
84
+ "path": "source/BAMbinSortUnmapped.h",
85
+ "sha256": "e8be7aa723afb4fc7db0e2eab13b6e50732571457d510092d4b100069cdb5020",
86
+ "language": "C/C++",
87
+ "lines": 12,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 3370
91
+ },
92
+ {
93
+ "path": "source/BAMfunctions.cpp",
94
+ "sha256": "ca7faa893c749db90777b2e5c48ddb56bb91c5159483ba22c0cd36b5e295df92",
95
+ "language": "C++",
96
+ "lines": 194,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 2767
100
+ },
101
+ {
102
+ "path": "source/BAMfunctions.h",
103
+ "sha256": "24ae61be831accbec19b46a87e227821b8d704707d0df448025fce0de1e8ca88",
104
+ "language": "C/C++",
105
+ "lines": 79,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 3946
109
+ },
110
+ {
111
+ "path": "source/BAMoutput.cpp",
112
+ "sha256": "12b8e120b181964996f47177195bbe52a25cfdc605fa9614930a6a5cc9e00fcc",
113
+ "language": "C++",
114
+ "lines": 186,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 2791
118
+ },
119
+ {
120
+ "path": "source/BAMoutput.h",
121
+ "sha256": "0fc676c33b0748fcd216a1cf4152946d050e53497777b8c2f6de1c06778572e5",
122
+ "language": "C/C++",
123
+ "lines": 37,
124
+ "truncated": false,
125
+ "block": 3,
126
+ "row": 3571
127
+ },
128
+ {
129
+ "path": "source/Chain.cpp",
130
+ "sha256": "d48d64e7ba78d6d13382e0fdb93ab9641486251e77d56e3bf2cf5c67e8fc98ba",
131
+ "language": "C++",
132
+ "lines": 126,
133
+ "truncated": false,
134
+ "block": 3,
135
+ "row": 2520
136
+ },
137
+ {
138
+ "path": "source/Chain.h",
139
+ "sha256": "d7a2922315abc3ccf4cb5a4fc3ba3366238aad40838da04ce8dec3e9a5f86471",
140
+ "language": "C/C++",
141
+ "lines": 30,
142
+ "truncated": false,
143
+ "block": 3,
144
+ "row": 3440
145
+ },
146
+ {
147
+ "path": "source/ChimericAlign.cpp",
148
+ "sha256": "349be7139d8518b3864a6680e9d01662283dcc6b4d296903c49eb5d504c7650e",
149
+ "language": "C++",
150
+ "lines": 32,
151
+ "truncated": false,
152
+ "block": 3,
153
+ "row": 1492
154
+ },
155
+ {
156
+ "path": "source/ChimericAlign.h",
157
+ "sha256": "b55c719978db9c56d22f4183f61b9c581ae3fe51f9a7c84744e714871923be9c",
158
+ "language": "C/C++",
159
+ "lines": 41,
160
+ "truncated": false,
161
+ "block": 3,
162
+ "row": 3595
163
+ },
164
+ {
165
+ "path": "source/ChimericAlign_chimericBAMoutput.cpp",
166
+ "sha256": "076d74764691a18af95b53b9388a677be9b2b3acfb3ad9edfb06d2ffcf894f9a",
167
+ "language": "C++",
168
+ "lines": 105,
169
+ "truncated": false,
170
+ "block": 3,
171
+ "row": 2599
172
+ },
173
+ {
174
+ "path": "source/ChimericAlign_chimericJunctionOutput.cpp",
175
+ "sha256": "8fe67cefcd859e657f9d1f2881dfe5757cb7aa2c16f871fde19bbc8f581b6649",
176
+ "language": "C++",
177
+ "lines": 23,
178
+ "truncated": false,
179
+ "block": 3,
180
+ "row": 1686
181
+ },
182
+ {
183
+ "path": "source/ChimericAlign_chimericStitching.cpp",
184
+ "sha256": "7e004ab84473afa1d914fce54c4ee7b1a92e7ae6d5058f840d7c19af29978cd4",
185
+ "language": "C++",
186
+ "lines": 181,
187
+ "truncated": false,
188
+ "block": 3,
189
+ "row": 2742
190
+ },
191
+ {
192
+ "path": "source/ChimericDetection.cpp",
193
+ "sha256": "c9182a6284abc57f1b3755af8f4daf55479ca192810442f9c857bffcf797b5bd",
194
+ "language": "C++",
195
+ "lines": 6,
196
+ "truncated": false,
197
+ "block": 3,
198
+ "row": 702
199
+ },
200
+ {
201
+ "path": "source/ChimericDetection.h",
202
+ "sha256": "e25c2390ebd9b48102e51d4cf0f73062cdcd606b7c224e9986610524a0ba4352",
203
+ "language": "C/C++",
204
+ "lines": 29,
205
+ "truncated": false,
206
+ "block": 3,
207
+ "row": 3449
208
+ },
209
+ {
210
+ "path": "source/ChimericDetection_chimericDetectionMult.cpp",
211
+ "sha256": "6c7d9250fbb1b72b38c67ce16d3b4ea1f3f47ced34a8388e30f3daa601729985",
212
+ "language": "C++",
213
+ "lines": 138,
214
+ "truncated": false,
215
+ "block": 3,
216
+ "row": 2728
217
+ },
218
+ {
219
+ "path": "source/ChimericSegment.cpp",
220
+ "sha256": "04626d428b777f80ef6e38a1c4ec1ceaa85039f2916911f7c8b00c3a808cad74",
221
+ "language": "C++",
222
+ "lines": 32,
223
+ "truncated": false,
224
+ "block": 3,
225
+ "row": 1672
226
+ },
227
+ {
228
+ "path": "source/ChimericSegment.h",
229
+ "sha256": "bb086a8ab9621e859469bcf4b04f68ee8ca408e5949cda8f8e2fc7722fc2f6a1",
230
+ "language": "C/C++",
231
+ "lines": 23,
232
+ "truncated": false,
233
+ "block": 3,
234
+ "row": 3420
235
+ },
236
+ {
237
+ "path": "source/ChimericTranscript.h",
238
+ "sha256": "d010357e10b6c898d626af8ea95d3517d623390a3b996176405215c41f8ad0d6",
239
+ "language": "C/C++",
240
+ "lines": 19,
241
+ "truncated": false,
242
+ "block": 3,
243
+ "row": 3412
244
+ },
245
+ {
246
+ "path": "source/ClipCR4.cpp",
247
+ "sha256": "ff398e5cce959ee753e913c9497376151598ea2b788721d722bbab9552cf64a3",
248
+ "language": "C++",
249
+ "lines": 109,
250
+ "truncated": false,
251
+ "block": 3,
252
+ "row": 2070
253
+ },
254
+ {
255
+ "path": "source/ClipCR4.h",
256
+ "sha256": "ac05d9bd4b89046b83732e1ccc1706882f7e0a6a2b34b9857e2cbd42b51446ec",
257
+ "language": "C/C++",
258
+ "lines": 41,
259
+ "truncated": false,
260
+ "block": 3,
261
+ "row": 3458
262
+ },
263
+ {
264
+ "path": "source/ClipMate.h",
265
+ "sha256": "0c9b461e6b4e28931f3f871bc70bec540a68bc3aaa98181673d7a47cfa2dc95b",
266
+ "language": "C/C++",
267
+ "lines": 34,
268
+ "truncated": false,
269
+ "block": 3,
270
+ "row": 3456
271
+ },
272
+ {
273
+ "path": "source/ClipMate_clip.cpp",
274
+ "sha256": "5984fcab7743aebb2e1c3a79c650d61ab7477a6b824ef1b6d8132338f92912ae",
275
+ "language": "C++",
276
+ "lines": 78,
277
+ "truncated": false,
278
+ "block": 3,
279
+ "row": 1919
280
+ },
281
+ {
282
+ "path": "source/ClipMate_clipChunk.cpp",
283
+ "sha256": "f685a456665f8f3f6e6b56b149d11d76c00de9157352b7f60da8b8f3542046b4",
284
+ "language": "C++",
285
+ "lines": 62,
286
+ "truncated": false,
287
+ "block": 3,
288
+ "row": 1742
289
+ },
290
+ {
291
+ "path": "source/ClipMate_initialize.cpp",
292
+ "sha256": "55488425a7f78fd92ea5b366be8f9c0b4c5c533bc68b97163fca8ce7036a7e5e",
293
+ "language": "C++",
294
+ "lines": 32,
295
+ "truncated": false,
296
+ "block": 3,
297
+ "row": 1011
298
+ },
299
+ {
300
+ "path": "source/ErrorWarning.cpp",
301
+ "sha256": "e0931d14f98a1916abb99ec344fb50ffd68bd5a63a49855586a1b41f1d753a18",
302
+ "language": "C++",
303
+ "lines": 37,
304
+ "truncated": false,
305
+ "block": 3,
306
+ "row": 1402
307
+ },
308
+ {
309
+ "path": "source/ErrorWarning.h",
310
+ "sha256": "f2e927b958a4230c6fd85535203e2e711ff4d651c8060add98d58f85a8639671",
311
+ "language": "C/C++",
312
+ "lines": 9,
313
+ "truncated": false,
314
+ "block": 3,
315
+ "row": 3377
316
+ },
317
+ {
318
+ "path": "source/GTF.cpp",
319
+ "sha256": "9254afb2a2fa8ff3e751d9bfafd2b86f4d389ee8b6e647ad09416dd61962229c",
320
+ "language": "C++",
321
+ "lines": 171,
322
+ "truncated": false,
323
+ "block": 3,
324
+ "row": 2888
325
+ },
326
+ {
327
+ "path": "source/GTF.h",
328
+ "sha256": "4fb9ffd8118f9a97762d392cd5dd950dbdad6cd9888f06119febb4116a98224f",
329
+ "language": "C/C++",
330
+ "lines": 36,
331
+ "truncated": false,
332
+ "block": 3,
333
+ "row": 3475
334
+ },
335
+ {
336
+ "path": "source/GTF_superTranscript.cpp",
337
+ "sha256": "6553a3ebeda538df7327b91730c7d63b3477aecdd77d4e0f95c9d1b87a673f29",
338
+ "language": "C++",
339
+ "lines": 257,
340
+ "truncated": false,
341
+ "block": 3,
342
+ "row": 3064
343
+ },
344
+ {
345
+ "path": "source/GTF_transcriptGeneSJ.cpp",
346
+ "sha256": "dccd988d45418def20a8086fadb7b57a15b9a703e1ccc3586dc3642286c2c297",
347
+ "language": "C++",
348
+ "lines": 183,
349
+ "truncated": false,
350
+ "block": 3,
351
+ "row": 2918
352
+ },
353
+ {
354
+ "path": "source/Genome.cpp",
355
+ "sha256": "ee10043fa3c0053ad4e587fa5ffe2c6baf51e552613ce0a60182c84f1dac0126",
356
+ "language": "C++",
357
+ "lines": 234,
358
+ "truncated": false,
359
+ "block": 3,
360
+ "row": 2990
361
+ },
362
+ {
363
+ "path": "source/Genome.h",
364
+ "sha256": "9483ed26c8739a4c04cc85856257bb0142a6c66a95666e1b3e5333f3b5ee5112",
365
+ "language": "C/C++",
366
+ "lines": 107,
367
+ "truncated": false,
368
+ "block": 3,
369
+ "row": 4023
370
+ },
371
+ {
372
+ "path": "source/Genome_genomeGenerate.cpp",
373
+ "sha256": "3d8fe6cf3685e25cc76c3dcfba12ed68ff2b5946bab22ddedc7996a077ba2124",
374
+ "language": "C++",
375
+ "lines": 438,
376
+ "truncated": false,
377
+ "block": 3,
378
+ "row": 3176
379
+ },
380
+ {
381
+ "path": "source/Genome_genomeLoad.cpp",
382
+ "sha256": "f6a85ef14d13e814d3291ee86ce17599590fb778f65268bbe2eafdf37bc77542",
383
+ "language": "C++",
384
+ "lines": 521,
385
+ "truncated": false,
386
+ "block": 3,
387
+ "row": 3214
388
+ },
389
+ {
390
+ "path": "source/Genome_genomeOutLoad.cpp",
391
+ "sha256": "51d51a2a4f665b6ee6d9158cc9cc07fc21ef2ed075c67e87912909eedf6410d9",
392
+ "language": "C++",
393
+ "lines": 58,
394
+ "truncated": false,
395
+ "block": 3,
396
+ "row": 1851
397
+ },
398
+ {
399
+ "path": "source/Genome_insertSequences.cpp",
400
+ "sha256": "8a72b76d09291d81ca49fcc395ff193803bc4d6144c107e35e5a6a175ea08c7a",
401
+ "language": "C++",
402
+ "lines": 33,
403
+ "truncated": false,
404
+ "block": 3,
405
+ "row": 1386
406
+ },
407
+ {
408
+ "path": "source/Genome_transformGenome.cpp",
409
+ "sha256": "3b0807d1543e0a10cda68cfff9d19849e157048d4976191cd1e44b7efa96c12e",
410
+ "language": "C++",
411
+ "lines": 324,
412
+ "truncated": false,
413
+ "block": 3,
414
+ "row": 3087
415
+ },
416
+ {
417
+ "path": "source/GlobalVariables.cpp",
418
+ "sha256": "f4ccc14a0adadc10b2a124adde5244813c611bcc88210d2ed544c08e06fd6020",
419
+ "language": "C++",
420
+ "lines": 4,
421
+ "truncated": false,
422
+ "block": 3,
423
+ "row": 452
424
+ },
425
+ {
426
+ "path": "source/GlobalVariables.h",
427
+ "sha256": "15f402cde661a5cc115382d805f4c07e41640dfea1e54b8f692c97acae8e9ae9",
428
+ "language": "C/C++",
429
+ "lines": 9,
430
+ "truncated": false,
431
+ "block": 3,
432
+ "row": 3328
433
+ },
434
+ {
435
+ "path": "source/InOutStreams.cpp",
436
+ "sha256": "14d75d256e0ce9e350bdeff6d9d7162cd44626f7e3cbd116a060c270a149b453",
437
+ "language": "C++",
438
+ "lines": 44,
439
+ "truncated": false,
440
+ "block": 3,
441
+ "row": 1187
442
+ },
443
+ {
444
+ "path": "source/InOutStreams.h",
445
+ "sha256": "a152688ffce13341f3ef96901a21537c065d2d79de0e20b588ae0d670687eede",
446
+ "language": "C/C++",
447
+ "lines": 23,
448
+ "truncated": false,
449
+ "block": 3,
450
+ "row": 3419
451
+ },
452
+ {
453
+ "path": "source/IncludeDefine.h",
454
+ "sha256": "0a55688ea42ca47041f2e53011f311300be7891ac3b10bd9de7767bed62af956",
455
+ "language": "C/C++",
456
+ "lines": 255,
457
+ "truncated": false,
458
+ "block": 3,
459
+ "row": 4133
460
+ },
461
+ {
462
+ "path": "source/OutSJ.cpp",
463
+ "sha256": "1e0383cf8ec87833993796388329b7697af2043eca5324034c60b3efd2f8c6ff",
464
+ "language": "C++",
465
+ "lines": 123,
466
+ "truncated": false,
467
+ "block": 3,
468
+ "row": 2513
469
+ },
470
+ {
471
+ "path": "source/OutSJ.h",
472
+ "sha256": "c60630a0024845aef8cc778e18684e77195f90bc7ecc9c7918ce28c21b211099",
473
+ "language": "C/C++",
474
+ "lines": 59,
475
+ "truncated": false,
476
+ "block": 3,
477
+ "row": 3695
478
+ },
479
+ {
480
+ "path": "source/PackedArray.cpp",
481
+ "sha256": "f1aeb9cfa77754d75bfd69b3a0816bd1318a4088c480a5934520f9f85aaf2586",
482
+ "language": "C++",
483
+ "lines": 43,
484
+ "truncated": false,
485
+ "block": 3,
486
+ "row": 1239
487
+ },
488
+ {
489
+ "path": "source/PackedArray.h",
490
+ "sha256": "f876319310d0f3eb405dbd6dbc5c8e7793f360f07497dd46e52e80c7ce5ab77d",
491
+ "language": "C/C++",
492
+ "lines": 34,
493
+ "truncated": false,
494
+ "block": 3,
495
+ "row": 3453
496
+ },
497
+ {
498
+ "path": "source/ParameterInfo.h",
499
+ "sha256": "be3bcaf9d18188bf3e29eda47dba2d644f2af43b343bdab5651e2d6d85f15670",
500
+ "language": "C/C++",
501
+ "lines": 112,
502
+ "truncated": false,
503
+ "block": 3,
504
+ "row": 3943
505
+ },
506
+ {
507
+ "path": "source/Parameters.cpp",
508
+ "sha256": "f303bd6fb1d541924d9f501ffc5266b49f6bda48dfbf593b5ad0d139abd72ae1",
509
+ "language": "C++",
510
+ "lines": 1269,
511
+ "truncated": false,
512
+ "block": 3,
513
+ "row": 3286
514
+ },
515
+ {
516
+ "path": "source/Parameters.h",
517
+ "sha256": "0bb9b86c1159f5fe1f12c241fc5ca3dc7d7a36f67f5bc26cc4fbd9dfbd723387",
518
+ "language": "C/C++",
519
+ "lines": 374,
520
+ "truncated": false,
521
+ "block": 3,
522
+ "row": 4385
523
+ },
524
+ {
525
+ "path": "source/ParametersChimeric.h",
526
+ "sha256": "cd09b75ad62d3e892ecb314f746ec4c19b0706e9fd615f7d69bfc77f097a540b",
527
+ "language": "C/C++",
528
+ "lines": 41,
529
+ "truncated": false,
530
+ "block": 3,
531
+ "row": 3485
532
+ },
533
+ {
534
+ "path": "source/ParametersChimeric_initialize.cpp",
535
+ "sha256": "12d46f39ff22e1a1cc9d5ee169946b1bf433827494b9aef8edfaf36451d07c60",
536
+ "language": "C++",
537
+ "lines": 118,
538
+ "truncated": false,
539
+ "block": 3,
540
+ "row": 2579
541
+ },
542
+ {
543
+ "path": "source/ParametersClip.h",
544
+ "sha256": "4de79db0d8cda758a3cbbf7b8f9527297e55deb79d623565a0e5c521c5b21685",
545
+ "language": "C/C++",
546
+ "lines": 37,
547
+ "truncated": false,
548
+ "block": 3,
549
+ "row": 3430
550
+ },
551
+ {
552
+ "path": "source/ParametersClip_initialize.cpp",
553
+ "sha256": "ca59ff54a49da94444d41d4595f6fd33bb6433ca1613803c5f021a345d90c8e1",
554
+ "language": "C++",
555
+ "lines": 107,
556
+ "truncated": false,
557
+ "block": 3,
558
+ "row": 2609
559
+ },
560
+ {
561
+ "path": "source/ParametersGenome.cpp",
562
+ "sha256": "f7ae6d62627b976614c6e804846d9b3c7a89a442f8d73a5e591fee1a67194706",
563
+ "language": "C++",
564
+ "lines": 59,
565
+ "truncated": false,
566
+ "block": 3,
567
+ "row": 2052
568
+ },
569
+ {
570
+ "path": "source/ParametersGenome.h",
571
+ "sha256": "95c0de173c2a9e4a23002f456b060f349baf2f3a251fd659aa287a6393171ee0",
572
+ "language": "C/C++",
573
+ "lines": 63,
574
+ "truncated": false,
575
+ "block": 3,
576
+ "row": 3671
577
+ },
578
+ {
579
+ "path": "source/ParametersSolo.cpp",
580
+ "sha256": "a08f59600248dbc22a593ecf19ddab5429f6432d7da5d2b7750896d3390ef1c4",
581
+ "language": "C++",
582
+ "lines": 721,
583
+ "truncated": false,
584
+ "block": 3,
585
+ "row": 3255
586
+ },
587
+ {
588
+ "path": "source/ParametersSolo.h",
589
+ "sha256": "46558240ef417718dfbd9c2acc921ceacea9fcad9a36634ac1238794a25c53ba",
590
+ "language": "C/C++",
591
+ "lines": 220,
592
+ "truncated": false,
593
+ "block": 3,
594
+ "row": 4200
595
+ },
596
+ {
597
+ "path": "source/Parameters_closeReadsFiles.cpp",
598
+ "sha256": "9c476fdb88bf3c370eb9445c1c19632cac18a1dcce53a87ebc7b79357f10945d",
599
+ "language": "C++",
600
+ "lines": 12,
601
+ "truncated": false,
602
+ "block": 3,
603
+ "row": 716
604
+ },
605
+ {
606
+ "path": "source/Parameters_openReadsFiles.cpp",
607
+ "sha256": "9a868132fa48a3b9dda5e79a802abd8d6c80430b27c33e1531d26fcb1a7823cc",
608
+ "language": "C++",
609
+ "lines": 111,
610
+ "truncated": false,
611
+ "block": 3,
612
+ "row": 2552
613
+ },
614
+ {
615
+ "path": "source/Parameters_readFilesInit.cpp",
616
+ "sha256": "d9672c1b51c578a3c2f781917c06a5820a27ffb5df498509562a4544e8c37c46",
617
+ "language": "C++",
618
+ "lines": 167,
619
+ "truncated": false,
620
+ "block": 3,
621
+ "row": 2935
622
+ },
623
+ {
624
+ "path": "source/Parameters_readSAMheader.cpp",
625
+ "sha256": "36cb976f306358464e7b3a30099e29868656482143d2203b8f6775c9fed34eb4",
626
+ "language": "C++",
627
+ "lines": 44,
628
+ "truncated": false,
629
+ "block": 3,
630
+ "row": 1699
631
+ },
632
+ {
633
+ "path": "source/Parameters_samAttributes.cpp",
634
+ "sha256": "8d5f074755e0e5aacaa763d079020102a178f16d3bf78f2fa9cf347b040e6b9e",
635
+ "language": "C++",
636
+ "lines": 263,
637
+ "truncated": false,
638
+ "block": 3,
639
+ "row": 3063
640
+ },
641
+ {
642
+ "path": "source/Quantifications.cpp",
643
+ "sha256": "84563f355c50ba7b87f23812d905927ebec27f9c8d7714dd848114b7c116c88c",
644
+ "language": "C++",
645
+ "lines": 37,
646
+ "truncated": false,
647
+ "block": 3,
648
+ "row": 1250
649
+ },
650
+ {
651
+ "path": "source/Quantifications.h",
652
+ "sha256": "7d315502780691220bf3b9e86d544caeddd56a3ef0edf82072e144197f3faba6",
653
+ "language": "C/C++",
654
+ "lines": 22,
655
+ "truncated": false,
656
+ "block": 3,
657
+ "row": 3436
658
+ },
659
+ {
660
+ "path": "source/ReadAlign.cpp",
661
+ "sha256": "c222d7f923c57652abf3fa4cf734a86ffacd5453ccdb4fbfbcca9852d40c5b15",
662
+ "language": "C++",
663
+ "lines": 125,
664
+ "truncated": false,
665
+ "block": 3,
666
+ "row": 2458
667
+ },
668
+ {
669
+ "path": "source/ReadAlign.h",
670
+ "sha256": "a5edf0b7b9b880eec6ea1f610fbb8c07716a855649c36c36dd0327df8534f3c4",
671
+ "language": "C/C++",
672
+ "lines": 239,
673
+ "truncated": false,
674
+ "block": 3,
675
+ "row": 4309
676
+ },
677
+ {
678
+ "path": "source/ReadAlignChunk.cpp",
679
+ "sha256": "bce6c5cd11d3b3ddac00f21e3058945c0139c678bdf0b453ce24d55de2677537",
680
+ "language": "C++",
681
+ "lines": 170,
682
+ "truncated": false,
683
+ "block": 3,
684
+ "row": 2690
685
+ },
686
+ {
687
+ "path": "source/ReadAlignChunk.h",
688
+ "sha256": "8a8ec5563637e49d752f1725432fd556caba4083e1fd4bbb2f0566f457550eb5",
689
+ "language": "C/C++",
690
+ "lines": 49,
691
+ "truncated": false,
692
+ "block": 3,
693
+ "row": 3681
694
+ },
695
+ {
696
+ "path": "source/ReadAlignChunk_mapChunk.cpp",
697
+ "sha256": "e27e8ec505f05f073e16e606a04e0817e6432c60e94d04d4d3c30e6a09613b84",
698
+ "language": "C++",
699
+ "lines": 128,
700
+ "truncated": false,
701
+ "block": 3,
702
+ "row": 2772
703
+ },
704
+ {
705
+ "path": "source/ReadAlignChunk_processChunks.cpp",
706
+ "sha256": "250c1c61a2fb9be783e5627cb4b4d776e264d754cde2cf869e46d0a579744a3a",
707
+ "language": "C++",
708
+ "lines": 302,
709
+ "truncated": false,
710
+ "block": 3,
711
+ "row": 3171
712
+ },
713
+ {
714
+ "path": "source/ReadAlign_CIGAR.cpp",
715
+ "sha256": "d5bd49fb93f637bd36826f9ff4da1b88e63142f6ff25ac21dff2fe55416c821e",
716
+ "language": "C++",
717
+ "lines": 62,
718
+ "truncated": false,
719
+ "block": 3,
720
+ "row": 2045
721
+ },
722
+ {
723
+ "path": "source/ReadAlign_alignBAM.cpp",
724
+ "sha256": "164bc33ddca4d8cb5057d33b1050a4b1ee6af9eb62359308e296feea9d8cdfe8",
725
+ "language": "C++",
726
+ "lines": 614,
727
+ "truncated": false,
728
+ "block": 3,
729
+ "row": 3236
730
+ },
731
+ {
732
+ "path": "source/ReadAlign_assignAlignToWindow.cpp",
733
+ "sha256": "96a6a1ca0fa56b63e5eeb0d1f38311b52d748c0021c386aded65e087f51b1f07",
734
+ "language": "C++",
735
+ "lines": 130,
736
+ "truncated": false,
737
+ "block": 3,
738
+ "row": 2568
739
+ },
740
+ {
741
+ "path": "source/ReadAlign_calcCIGAR.cpp",
742
+ "sha256": "3e92b38834419af1c610d8907a0624e6301ed9c83afe22ef41ff3871502d899a",
743
+ "language": "C++",
744
+ "lines": 58,
745
+ "truncated": false,
746
+ "block": 3,
747
+ "row": 1889
748
+ },
749
+ {
750
+ "path": "source/ReadAlign_chimericDetection.cpp",
751
+ "sha256": "e83d7e5dd81150d123adeb09f7ad78839e5f2cdf9897e433faeeb4b4f3169238",
752
+ "language": "C++",
753
+ "lines": 57,
754
+ "truncated": false,
755
+ "block": 3,
756
+ "row": 1741
757
+ },
758
+ {
759
+ "path": "source/ReadAlign_chimericDetectionOld.cpp",
760
+ "sha256": "0aaf72c4c884633df0f4059fba250799fdbd3f2f174f9c9b53bf845c159308bd",
761
+ "language": "C++",
762
+ "lines": 312,
763
+ "truncated": false,
764
+ "block": 3,
765
+ "row": 3120
766
+ },
767
+ {
768
+ "path": "source/ReadAlign_chimericDetectionOldOutput.cpp",
769
+ "sha256": "02f91d3ed125fe6e9fa893b148e7cf71ecc33190e77b03d2144630c537767113",
770
+ "language": "C++",
771
+ "lines": 74,
772
+ "truncated": false,
773
+ "block": 3,
774
+ "row": 2289
775
+ },
776
+ {
777
+ "path": "source/ReadAlign_chimericDetectionPEmerged.cpp",
778
+ "sha256": "edb0549cffa248837a61fc68611b6a2755b6edd60c4edad9e1276ebbc1e89af2",
779
+ "language": "C++",
780
+ "lines": 39,
781
+ "truncated": false,
782
+ "block": 3,
783
+ "row": 1215
784
+ },
785
+ {
786
+ "path": "source/ReadAlign_createExtendWindowsWithAlign.cpp",
787
+ "sha256": "1e8e3813a066390427e12defc13004e5b678663ab16c048d097b9056b84a942d",
788
+ "language": "C++",
789
+ "lines": 85,
790
+ "truncated": false,
791
+ "block": 3,
792
+ "row": 2271
793
+ },
794
+ {
795
+ "path": "source/ReadAlign_mapOneRead.cpp",
796
+ "sha256": "28fccbe8df679125525a783b8e84352d5e4e3edc73fa33bc0c352a07683775aa",
797
+ "language": "C++",
798
+ "lines": 118,
799
+ "truncated": false,
800
+ "block": 3,
801
+ "row": 2560
802
+ },
803
+ {
804
+ "path": "source/ReadAlign_mapOneReadSpliceGraph.cpp",
805
+ "sha256": "228b0e5a64b44772f5ea62ebefcdbe7379211fc8ea0fbd2cc5f120379edcd5d5",
806
+ "language": "C++",
807
+ "lines": 40,
808
+ "truncated": false,
809
+ "block": 3,
810
+ "row": 1278
811
+ },
812
+ {
813
+ "path": "source/ReadAlign_mappedFilter.cpp",
814
+ "sha256": "27e695f0b752d5e36871a1f72a081c1420f749c1a4c05e282d907e7f8ccafaf9",
815
+ "language": "C++",
816
+ "lines": 21,
817
+ "truncated": false,
818
+ "block": 3,
819
+ "row": 1103
820
+ },
821
+ {
822
+ "path": "source/ReadAlign_maxMappableLength2strands.cpp",
823
+ "sha256": "cdff4d368b127cab3e9e3cdb3c09708940472d12f3c43fa271dbeb048f3ba6b6",
824
+ "language": "C++",
825
+ "lines": 115,
826
+ "truncated": false,
827
+ "block": 3,
828
+ "row": 2497
829
+ },
830
+ {
831
+ "path": "source/ReadAlign_multMapSelect.cpp",
832
+ "sha256": "d4379f1b91b4100649599e256e587ca3639da88ae96cc86aa2045b45b029e9b0",
833
+ "language": "C++",
834
+ "lines": 95,
835
+ "truncated": false,
836
+ "block": 3,
837
+ "row": 2336
838
+ },
839
+ {
840
+ "path": "source/ReadAlign_oneRead.cpp",
841
+ "sha256": "76aa9321c3cf63cc45acd8c16d0b841faec1b9b0aac3e78bbdea865867da9538",
842
+ "language": "C++",
843
+ "lines": 124,
844
+ "truncated": false,
845
+ "block": 3,
846
+ "row": 2439
847
+ },
848
+ {
849
+ "path": "source/ReadAlign_outputAlignments.cpp",
850
+ "sha256": "fa85b7106b2aa29d1de9d9d899078f701b8c18dbeb53456b8e8f1eb663e566c7",
851
+ "language": "C++",
852
+ "lines": 325,
853
+ "truncated": false,
854
+ "block": 3,
855
+ "row": 3161
856
+ },
857
+ {
858
+ "path": "source/ReadAlign_outputSpliceGraphSAM.cpp",
859
+ "sha256": "c0e9eec6a92039b9db44c46b8e5d6158fb4a2070e0a5788893d4ec6f8d273981",
860
+ "language": "C++",
861
+ "lines": 164,
862
+ "truncated": false,
863
+ "block": 3,
864
+ "row": 2638
865
+ },
866
+ {
867
+ "path": "source/ReadAlign_outputTranscriptCIGARp.cpp",
868
+ "sha256": "c3316d152ebac5993a544457f27945fb1f9e194f091c53360c703f2ca3f69f6a",
869
+ "language": "C++",
870
+ "lines": 65,
871
+ "truncated": false,
872
+ "block": 3,
873
+ "row": 2056
874
+ },
875
+ {
876
+ "path": "source/ReadAlign_outputTranscriptSAM.cpp",
877
+ "sha256": "b11673285edd158300b32ee77b20cea9890dcb4665a5c42e615113c4c35ae313",
878
+ "language": "C++",
879
+ "lines": 359,
880
+ "truncated": false,
881
+ "block": 3,
882
+ "row": 3130
883
+ },
884
+ {
885
+ "path": "source/ReadAlign_outputTranscriptSJ.cpp",
886
+ "sha256": "57a815139cf4a0bb6912ea55a6527bebac6066729eaf345f24f1da78e95291de",
887
+ "language": "C++",
888
+ "lines": 56,
889
+ "truncated": false,
890
+ "block": 3,
891
+ "row": 2191
892
+ },
893
+ {
894
+ "path": "source/ReadAlign_outputVariation.cpp",
895
+ "sha256": "fbebdef6f29f00e051babc9956af5cc0dc40582949d04b50c5b45950a40867fb",
896
+ "language": "C++",
897
+ "lines": 13,
898
+ "truncated": false,
899
+ "block": 3,
900
+ "row": 479
901
+ },
902
+ {
903
+ "path": "source/ReadAlign_peOverlapMergeMap.cpp",
904
+ "sha256": "c46fe04e47192bc2792565830378a130b0a412539c8b1d204cb7355286a74fd3",
905
+ "language": "C++",
906
+ "lines": 368,
907
+ "truncated": false,
908
+ "block": 3,
909
+ "row": 3095
910
+ },
911
+ {
912
+ "path": "source/ReadAlign_quantTranscriptome.cpp",
913
+ "sha256": "4b0816764956fb56db48d153c0f2c7176dd5aaec70ceb288fe950ea83570be65",
914
+ "language": "C++",
915
+ "lines": 91,
916
+ "truncated": false,
917
+ "block": 3,
918
+ "row": 2425
919
+ },
920
+ {
921
+ "path": "source/ReadAlign_stitchPieces.cpp",
922
+ "sha256": "c34b9fb0705be6ed2517c921e2513e508cc5b29d7f180d9f0c3534034e8de307",
923
+ "language": "C++",
924
+ "lines": 350,
925
+ "truncated": false,
926
+ "block": 3,
927
+ "row": 3117
928
+ },
929
+ {
930
+ "path": "source/ReadAlign_stitchWindowSeeds.cpp",
931
+ "sha256": "8cb44befc6b019ff71d91bded33db91e48229fe43e410e44dc7bc17f35d3d684",
932
+ "language": "C++",
933
+ "lines": 278,
934
+ "truncated": false,
935
+ "block": 3,
936
+ "row": 3074
937
+ },
938
+ {
939
+ "path": "source/ReadAlign_storeAligns.cpp",
940
+ "sha256": "6352dc72a86d2a07578caf5b7710052b6274366479b53671e810d9a33398a6d1",
941
+ "language": "C++",
942
+ "lines": 160,
943
+ "truncated": false,
944
+ "block": 3,
945
+ "row": 2641
946
+ },
947
+ {
948
+ "path": "source/ReadAlign_transformGenome.cpp",
949
+ "sha256": "e4b1a6007565ece2bb132a79473d935ef05d679aa8eed5f9521b63a8625c0c0a",
950
+ "language": "C++",
951
+ "lines": 74,
952
+ "truncated": false,
953
+ "block": 3,
954
+ "row": 2128
955
+ },
956
+ {
957
+ "path": "source/ReadAlign_waspMap.cpp",
958
+ "sha256": "506f94281348ebabaeb257e45746c0003dabd3273a5b0141164bf363b86dfbca",
959
+ "language": "C++",
960
+ "lines": 128,
961
+ "truncated": false,
962
+ "block": 3,
963
+ "row": 2353
964
+ },
965
+ {
966
+ "path": "source/ReadAnnotations.h",
967
+ "sha256": "86000759f930d4ae0a2b1ab1f87643398280f8ff1361b1bffef1d7d941a08603",
968
+ "language": "C/C++",
969
+ "lines": 47,
970
+ "truncated": false,
971
+ "block": 3,
972
+ "row": 3714
973
+ },
974
+ {
975
+ "path": "source/STAR.cpp",
976
+ "sha256": "e78db2798a32c3f275c1cca717579977224e25c9e0dadba9541f3d038b8683e6",
977
+ "language": "C++",
978
+ "lines": 313,
979
+ "truncated": false,
980
+ "block": 3,
981
+ "row": 3039
982
+ },
983
+ {
984
+ "path": "source/SequenceFuns.cpp",
985
+ "sha256": "9b0dcb17490feea51e96bbe9eac99943fda40fe04d703e1ac81343a46b59e143",
986
+ "language": "C++",
987
+ "lines": 445,
988
+ "truncated": false,
989
+ "block": 3,
990
+ "row": 3126
991
+ },
992
+ {
993
+ "path": "source/SequenceFuns.h",
994
+ "sha256": "66f975beb0e6c9d72ca57a2957fe3601e691859e097cae91188d6932a07ec677",
995
+ "language": "C/C++",
996
+ "lines": 32,
997
+ "truncated": false,
998
+ "block": 3,
999
+ "row": 3686
1000
+ },
1001
+ {
1002
+ "path": "source/SharedMemory.cpp",
1003
+ "sha256": "9d769797c1bd81edca8afbd6c884b1ce359017541141c243b2eab97cdc5de6eb",
1004
+ "language": "C++",
1005
+ "lines": 291,
1006
+ "truncated": false,
1007
+ "block": 3,
1008
+ "row": 2735
1009
+ },
1010
+ {
1011
+ "path": "source/SharedMemory.h",
1012
+ "sha256": "002d83da1cfb11bb859fcdb8306b1fb9f2c71359db8ffbad14e250de3fc3c5d8",
1013
+ "language": "C/C++",
1014
+ "lines": 182,
1015
+ "truncated": false,
1016
+ "block": 3,
1017
+ "row": 3974
1018
+ },
1019
+ {
1020
+ "path": "source/SimpleGoodTuring/sgt.h",
1021
+ "sha256": "2edda77c55ba4373fcce908ff0d53ad952a0ed7620d479371baa2db5edc73eee",
1022
+ "language": "C/C++",
1023
+ "lines": 300,
1024
+ "truncated": false,
1025
+ "block": 3,
1026
+ "row": 4353
1027
+ },
1028
+ {
1029
+ "path": "source/SjdbClass.h",
1030
+ "sha256": "7b7f188a241c8beeeb804e4ea44c722f966a9117cc24538ae5bf9c2a19ce98a6",
1031
+ "language": "C/C++",
1032
+ "lines": 17,
1033
+ "truncated": false,
1034
+ "block": 3,
1035
+ "row": 3358
1036
+ },
1037
+ {
1038
+ "path": "source/Solo.cpp",
1039
+ "sha256": "33f059b629c62b91d06f7c365e9cf7f9be917e6e08064b933b40fa171a430939",
1040
+ "language": "C++",
1041
+ "lines": 91,
1042
+ "truncated": false,
1043
+ "block": 3,
1044
+ "row": 2183
1045
+ },
1046
+ {
1047
+ "path": "source/Solo.h",
1048
+ "sha256": "311e77d3f576e63fe335ff1a200bd750e523c0ec86a0a97803a0aec9377b6e7d",
1049
+ "language": "C/C++",
1050
+ "lines": 30,
1051
+ "truncated": false,
1052
+ "block": 3,
1053
+ "row": 3423
1054
+ },
1055
+ {
1056
+ "path": "source/SoloBarcode.cpp",
1057
+ "sha256": "da84f5a70b9ae7665de854554dee7ddbf11889862d122acd25d6fe374c7cd667",
1058
+ "language": "C++",
1059
+ "lines": 152,
1060
+ "truncated": false,
1061
+ "block": 3,
1062
+ "row": 2722
1063
+ },
1064
+ {
1065
+ "path": "source/SoloBarcode.h",
1066
+ "sha256": "90fb66c769d23e8d4b66c581f7f5805f06574526171f465565141895ca4cdb25",
1067
+ "language": "C/C++",
1068
+ "lines": 38,
1069
+ "truncated": false,
1070
+ "block": 3,
1071
+ "row": 3596
1072
+ },
1073
+ {
1074
+ "path": "source/SoloBarcode_extractBarcode.cpp",
1075
+ "sha256": "a0553205134146a0081f4aaf1510a492ad21d012d60d74ae60cc5ed13563e137",
1076
+ "language": "C++",
1077
+ "lines": 34,
1078
+ "truncated": false,
1079
+ "block": 3,
1080
+ "row": 1257
1081
+ },
1082
+ {
1083
+ "path": "source/SoloCommon.h",
1084
+ "sha256": "93868869b5e66d8ab94e7aba97e2e5adcc01d09786025d1590e254e144405a6b",
1085
+ "language": "C/C++",
1086
+ "lines": 80,
1087
+ "truncated": false,
1088
+ "block": 3,
1089
+ "row": 3824
1090
+ },
1091
+ {
1092
+ "path": "source/SoloFeature.cpp",
1093
+ "sha256": "f3a7443a1fdb849d652048fba0e01b1f1bab634575874a9b427d3836083ac883",
1094
+ "language": "C++",
1095
+ "lines": 65,
1096
+ "truncated": false,
1097
+ "block": 3,
1098
+ "row": 1859
1099
+ },
1100
+ {
1101
+ "path": "source/SoloFeature.h",
1102
+ "sha256": "4185cb5055d5519c87cf5a68a7f65acc73ae3fa25d31dc428148f645ff4134c7",
1103
+ "language": "C/C++",
1104
+ "lines": 110,
1105
+ "truncated": false,
1106
+ "block": 3,
1107
+ "row": 4022
1108
+ },
1109
+ {
1110
+ "path": "source/SoloFeatureTypes.h",
1111
+ "sha256": "5f7d2bb2ea1eec942115271fa6ea5479740fecd2877672593aa9cbe739dd4efe",
1112
+ "language": "C/C++",
1113
+ "lines": 12,
1114
+ "truncated": false,
1115
+ "block": 3,
1116
+ "row": 3434
1117
+ },
1118
+ {
1119
+ "path": "source/SoloFeature_addBAMtags.cpp",
1120
+ "sha256": "a82e844594127424fdf29a20936906132e12e4624966784f998cca1746e81e12",
1121
+ "language": "C++",
1122
+ "lines": 26,
1123
+ "truncated": false,
1124
+ "block": 3,
1125
+ "row": 1039
1126
+ },
1127
+ {
1128
+ "path": "source/SoloFeature_cellFiltering.cpp",
1129
+ "sha256": "5134339f861572cee4c329004169babe803cda181fa2dad60f7c59be5b10a034",
1130
+ "language": "C++",
1131
+ "lines": 131,
1132
+ "truncated": false,
1133
+ "block": 3,
1134
+ "row": 2648
1135
+ },
1136
+ {
1137
+ "path": "source/SoloFeature_collapseUMI_Graph.cpp",
1138
+ "sha256": "b35965f41bd65fb8124876a595fb0a50277014ad11d65f035ad115477d7b3aac",
1139
+ "language": "C++",
1140
+ "lines": 172,
1141
+ "truncated": false,
1142
+ "block": 3,
1143
+ "row": 2793
1144
+ },
1145
+ {
1146
+ "path": "source/SoloFeature_collapseUMIall.cpp",
1147
+ "sha256": "d2cfbafa3bc933b55b3b2cb55860811c65a0b9863e2290958aae920bda6be295",
1148
+ "language": "C++",
1149
+ "lines": 658,
1150
+ "truncated": false,
1151
+ "block": 3,
1152
+ "row": 3238
1153
+ },
1154
+ {
1155
+ "path": "source/SoloFeature_countCBgeneUMI.cpp",
1156
+ "sha256": "ae124ffba531e2bcc56d5a9386916aed5a4b43ab29ec9a813936449bcc8dbacf",
1157
+ "language": "C++",
1158
+ "lines": 112,
1159
+ "truncated": false,
1160
+ "block": 3,
1161
+ "row": 2471
1162
+ },
1163
+ {
1164
+ "path": "source/SoloFeature_countSmartSeq.cpp",
1165
+ "sha256": "a23b5dbb34dd35cfc793831be1131fb4a43efba5d7db8821f05fe53a590cd383",
1166
+ "language": "C++",
1167
+ "lines": 159,
1168
+ "truncated": false,
1169
+ "block": 3,
1170
+ "row": 2701
1171
+ },
1172
+ {
1173
+ "path": "source/SoloFeature_countVelocyto.cpp",
1174
+ "sha256": "d99af8573a5f4d2eed3b1591dda48a426f021c2164335bc05ee0137c5a7c82f5",
1175
+ "language": "C++",
1176
+ "lines": 166,
1177
+ "truncated": false,
1178
+ "block": 3,
1179
+ "row": 2823
1180
+ },
1181
+ {
1182
+ "path": "source/SoloFeature_emptyDrops_CR.cpp",
1183
+ "sha256": "4dbbefadc28ff21cee5f6ab3c656d3001bfbf75c0585b140ed297fa73275570c",
1184
+ "language": "C++",
1185
+ "lines": 231,
1186
+ "truncated": false,
1187
+ "block": 3,
1188
+ "row": 3016
1189
+ },
1190
+ {
1191
+ "path": "source/SoloFeature_loadRawMatrix.cpp",
1192
+ "sha256": "d736d66ccb848f086e3b731b003538095345b1b2778627026efe7a86dc0c5d90",
1193
+ "language": "C++",
1194
+ "lines": 141,
1195
+ "truncated": false,
1196
+ "block": 3,
1197
+ "row": 2673
1198
+ },
1199
+ {
1200
+ "path": "source/SoloFeature_outputResults.cpp",
1201
+ "sha256": "1797225698f0ce551b70e3fc76914cf41aa1e59a721b14bc592a24708d5b0653",
1202
+ "language": "C++",
1203
+ "lines": 241,
1204
+ "truncated": false,
1205
+ "block": 3,
1206
+ "row": 3036
1207
+ },
1208
+ {
1209
+ "path": "source/SoloFeature_processRecords.cpp",
1210
+ "sha256": "56e8735464c69ecc23fb9368836766293693dc0ec32b152913d401660b604861",
1211
+ "language": "C++",
1212
+ "lines": 87,
1213
+ "truncated": false,
1214
+ "block": 3,
1215
+ "row": 2174
1216
+ },
1217
+ {
1218
+ "path": "source/SoloFeature_quantTranscript.cpp",
1219
+ "sha256": "993bf1445a2fb03a0181882c83d2e1cd6481c8c20f83b611e2453d6c53390df2",
1220
+ "language": "C++",
1221
+ "lines": 327,
1222
+ "truncated": false,
1223
+ "block": 3,
1224
+ "row": 3133
1225
+ },
1226
+ {
1227
+ "path": "source/SoloFeature_redistributeReadsByCB.cpp",
1228
+ "sha256": "b3b182331e601bef19b8d1ca116cf38c1924a7cdee05ba017027011952d1b821",
1229
+ "language": "C++",
1230
+ "lines": 80,
1231
+ "truncated": false,
1232
+ "block": 3,
1233
+ "row": 2066
1234
+ },
1235
+ {
1236
+ "path": "source/SoloFeature_statsOutput.cpp",
1237
+ "sha256": "46ddede74e503aaed0c5cbd5b3f053b8423f5a064bee5464b76ff655b5db10f5",
1238
+ "language": "C++",
1239
+ "lines": 123,
1240
+ "truncated": false,
1241
+ "block": 3,
1242
+ "row": 2631
1243
+ },
1244
+ {
1245
+ "path": "source/SoloFeature_sumThreads.cpp",
1246
+ "sha256": "d8e55e4434f192f6fd000f7241921729cc3088030a17ec61c923ecbac6a563db",
1247
+ "language": "C++",
1248
+ "lines": 101,
1249
+ "truncated": false,
1250
+ "block": 3,
1251
+ "row": 2320
1252
+ },
1253
+ {
1254
+ "path": "source/SoloFilteredCells.h",
1255
+ "sha256": "bc7e7d0a6cb2411b653c98b6e3694d3e31e95723c0fe0ea09d41eddb91a92c6a",
1256
+ "language": "C/C++",
1257
+ "lines": 33,
1258
+ "truncated": false,
1259
+ "block": 3,
1260
+ "row": 3499
1261
+ },
1262
+ {
1263
+ "path": "source/SoloRead.cpp",
1264
+ "sha256": "874a73ea609d25d58df320463332b70b6425756951b72d927e8f897f37594a47",
1265
+ "language": "C++",
1266
+ "lines": 22,
1267
+ "truncated": false,
1268
+ "block": 3,
1269
+ "row": 845
1270
+ },
1271
+ {
1272
+ "path": "source/SoloRead.h",
1273
+ "sha256": "9526d0b122400bd0358a66d1ecbd7c654b6d6070e8e203173f506a5ad0350d36",
1274
+ "language": "C/C++",
1275
+ "lines": 23,
1276
+ "truncated": false,
1277
+ "block": 3,
1278
+ "row": 3410
1279
+ },
1280
+ {
1281
+ "path": "source/SoloReadBarcode.cpp",
1282
+ "sha256": "3913a9b1420401758758990d757e5ac443bf6a748aba5b5f42f5b239db20fe34",
1283
+ "language": "C++",
1284
+ "lines": 51,
1285
+ "truncated": false,
1286
+ "block": 3,
1287
+ "row": 1389
1288
+ },
1289
+ {
1290
+ "path": "source/SoloReadBarcode.h",
1291
+ "sha256": "968775590bc37f3f73174a48d14a3a8289ae4801db47a1d24a7260a4b6b70825",
1292
+ "language": "C/C++",
1293
+ "lines": 46,
1294
+ "truncated": false,
1295
+ "block": 3,
1296
+ "row": 3667
1297
+ },
1298
+ {
1299
+ "path": "source/SoloReadBarcodeStats.h",
1300
+ "sha256": "d3e6302d6809b8858e78ec5a8ac7fd0d18e0c087f55c275d79ceb74061f2528f",
1301
+ "language": "C/C++",
1302
+ "lines": 27,
1303
+ "truncated": false,
1304
+ "block": 3,
1305
+ "row": 3479
1306
+ },
1307
+ {
1308
+ "path": "source/SoloReadBarcode_getCBandUMI.cpp",
1309
+ "sha256": "7fa473b91b86a1092b942eed68e6d408fe988a9005351a01e35b088bfa476508",
1310
+ "language": "C++",
1311
+ "lines": 429,
1312
+ "truncated": false,
1313
+ "block": 3,
1314
+ "row": 3178
1315
+ },
1316
+ {
1317
+ "path": "source/SoloReadFeature.cpp",
1318
+ "sha256": "8132da88c6fe520c1b11200fae2e857867ac0c00ea7acd4923b50d7a8a1db52c",
1319
+ "language": "C++",
1320
+ "lines": 63,
1321
+ "truncated": false,
1322
+ "block": 3,
1323
+ "row": 1770
1324
+ },
1325
+ {
1326
+ "path": "source/SoloReadFeature.h",
1327
+ "sha256": "90493c8290bcff5bd71e47d22b2b863fd62dad716f262c14b4462d146c8a0b9c",
1328
+ "language": "C/C++",
1329
+ "lines": 50,
1330
+ "truncated": false,
1331
+ "block": 3,
1332
+ "row": 3609
1333
+ },
1334
+ {
1335
+ "path": "source/SoloReadFeatureStats.h",
1336
+ "sha256": "de58cf487ec32ac3e5bfed8669ed590893e8b4425647a820d4ce3a58c6c6eea8",
1337
+ "language": "C/C++",
1338
+ "lines": 49,
1339
+ "truncated": false,
1340
+ "block": 3,
1341
+ "row": 3691
1342
+ },
1343
+ {
1344
+ "path": "source/SoloReadFeature_inputRecords.cpp",
1345
+ "sha256": "02005bd7e8c86ed9607847a908d0f6a5b5c70c99145c348b09d9aec35aba22e7",
1346
+ "language": "C++",
1347
+ "lines": 172,
1348
+ "truncated": false,
1349
+ "block": 3,
1350
+ "row": 2790
1351
+ },
1352
+ {
1353
+ "path": "source/SoloReadFeature_record.cpp",
1354
+ "sha256": "32d85312e9044fc10d3015bc7b478bc535eeb9bd779c904e3e9fbc58610c2f35",
1355
+ "language": "C++",
1356
+ "lines": 276,
1357
+ "truncated": false,
1358
+ "block": 3,
1359
+ "row": 3079
1360
+ },
1361
+ {
1362
+ "path": "source/SoloRead_record.cpp",
1363
+ "sha256": "a9c799e889d65a1fd926aab68bb418c920fbefbdbacfc35250c4e343e2c8b372",
1364
+ "language": "C++",
1365
+ "lines": 15,
1366
+ "truncated": false,
1367
+ "block": 3,
1368
+ "row": 751
1369
+ },
1370
+ {
1371
+ "path": "source/SpliceGraph.cpp",
1372
+ "sha256": "c96dac9d20cd090e66e8ea9c8c13989e6ce629eaf827c00194f81181ae3420b7",
1373
+ "language": "C++",
1374
+ "lines": 33,
1375
+ "truncated": false,
1376
+ "block": 3,
1377
+ "row": 1219
1378
+ },
1379
+ {
1380
+ "path": "source/SpliceGraph.h",
1381
+ "sha256": "ba0723cffbde74d492a5056e91685344d826204db2c31c245649f21eddbf61ef",
1382
+ "language": "C/C++",
1383
+ "lines": 58,
1384
+ "truncated": false,
1385
+ "block": 3,
1386
+ "row": 3715
1387
+ },
1388
+ {
1389
+ "path": "source/SpliceGraph_findSuperTr.cpp",
1390
+ "sha256": "ac4d2549cb32c321df610a08baf699929cda7a3bb912549ca270a2dee45bf4a5",
1391
+ "language": "C++",
1392
+ "lines": 186,
1393
+ "truncated": false,
1394
+ "block": 3,
1395
+ "row": 2864
1396
+ },
1397
+ {
1398
+ "path": "source/SpliceGraph_swScoreSpliced.cpp",
1399
+ "sha256": "d9c824fa6143ce22d53e281cda9fee1b813af98308060eb9387611242da1393a",
1400
+ "language": "C++",
1401
+ "lines": 249,
1402
+ "truncated": false,
1403
+ "block": 3,
1404
+ "row": 2963
1405
+ },
1406
+ {
1407
+ "path": "source/SpliceGraph_swTraceBack.cpp",
1408
+ "sha256": "a8b27ec4c182a7ea9d7501dd9ab8ede438216a64cc91475f778a639c155484ef",
1409
+ "language": "C++",
1410
+ "lines": 19,
1411
+ "truncated": false,
1412
+ "block": 3,
1413
+ "row": 833
1414
+ },
1415
+ {
1416
+ "path": "source/Stats.cpp",
1417
+ "sha256": "8120977869f2360d1486f3f5f3e52e6032f53ce255e569ac86026047fa12f92f",
1418
+ "language": "C++",
1419
+ "lines": 156,
1420
+ "truncated": false,
1421
+ "block": 3,
1422
+ "row": 2941
1423
+ },
1424
+ {
1425
+ "path": "source/Stats.h",
1426
+ "sha256": "ec5029ae0b7e7ca5798525b836b42ac93b7d3ef99d6f134a36fd6495c75ce16a",
1427
+ "language": "C/C++",
1428
+ "lines": 41,
1429
+ "truncated": false,
1430
+ "block": 3,
1431
+ "row": 3680
1432
+ },
1433
+ {
1434
+ "path": "source/SuffixArrayFuns.cpp",
1435
+ "sha256": "3e33a7568fb181fdad65fce125f818aa18634f5c33a8c44dca45a567ff3b31ff",
1436
+ "language": "C++",
1437
+ "lines": 410,
1438
+ "truncated": false,
1439
+ "block": 3,
1440
+ "row": 3068
1441
+ },
1442
+ {
1443
+ "path": "source/SuffixArrayFuns.h",
1444
+ "sha256": "f35e70b6359a919b9adccf3cb6f625a0ba6c8344098526fd637f4c84b58af710",
1445
+ "language": "C/C++",
1446
+ "lines": 18,
1447
+ "truncated": false,
1448
+ "block": 3,
1449
+ "row": 3483
1450
+ },
1451
+ {
1452
+ "path": "source/SuperTranscriptome.cpp",
1453
+ "sha256": "c38b97c33fe410d93b33d973f36b73b1b1dc0e78d1da2e2ff07b0435ee8cbe94",
1454
+ "language": "C++",
1455
+ "lines": 92,
1456
+ "truncated": false,
1457
+ "block": 3,
1458
+ "row": 2297
1459
+ },
1460
+ {
1461
+ "path": "source/SuperTranscriptome.h",
1462
+ "sha256": "4a04370dc22e9d26c1756412906221d8c1c99161669b2060dd4d9ae42ba8429a",
1463
+ "language": "C/C++",
1464
+ "lines": 42,
1465
+ "truncated": false,
1466
+ "block": 3,
1467
+ "row": 3565
1468
+ },
1469
+ {
1470
+ "path": "source/ThreadControl.cpp",
1471
+ "sha256": "36cca68786a85a7a336554d9dd6b78b3830de1f47dd6b88b559eb68b4288b3af",
1472
+ "language": "C++",
1473
+ "lines": 7,
1474
+ "truncated": false,
1475
+ "block": 3,
1476
+ "row": 475
1477
+ },
1478
+ {
1479
+ "path": "source/ThreadControl.h",
1480
+ "sha256": "966eb9cc9b166a598e4c0853ea8ec07b6cbb438e75d5582485fc2982593d29c6",
1481
+ "language": "C/C++",
1482
+ "lines": 29,
1483
+ "truncated": false,
1484
+ "block": 3,
1485
+ "row": 3437
1486
+ },
1487
+ {
1488
+ "path": "source/TimeFunctions.cpp",
1489
+ "sha256": "b00ba65f0831defa4a84ec8eff06af2d0d806af312354f6f8d1ef9b01daaf19c",
1490
+ "language": "C++",
1491
+ "lines": 20,
1492
+ "truncated": false,
1493
+ "block": 3,
1494
+ "row": 846
1495
+ },
1496
+ {
1497
+ "path": "source/TimeFunctions.h",
1498
+ "sha256": "fe4af9be5d3872145195d45b33ea44234b36123c34b723eef5094558fdbdad81",
1499
+ "language": "C/C++",
1500
+ "lines": 9,
1501
+ "truncated": false,
1502
+ "block": 3,
1503
+ "row": 3333
1504
+ },
1505
+ {
1506
+ "path": "source/Transcript.cpp",
1507
+ "sha256": "4fca46a05cf57ce222699e570c41f275a7d75a1d4bd4c9a34a6fa062cd90b9c8",
1508
+ "language": "C++",
1509
+ "lines": 59,
1510
+ "truncated": false,
1511
+ "block": 3,
1512
+ "row": 1575
1513
+ },
1514
+ {
1515
+ "path": "source/Transcript.h",
1516
+ "sha256": "a5e3c904966d1b3d23084a8543b6497d495bc767f77969772c7294fd71efbc86",
1517
+ "language": "C/C++",
1518
+ "lines": 83,
1519
+ "truncated": false,
1520
+ "block": 3,
1521
+ "row": 3907
1522
+ },
1523
+ {
1524
+ "path": "source/Transcript_alignScore.cpp",
1525
+ "sha256": "0188598f8fe151d39dfb0e28ae8c4d7776251fd312321adc483ba7bf24094e92",
1526
+ "language": "C++",
1527
+ "lines": 60,
1528
+ "truncated": false,
1529
+ "block": 3,
1530
+ "row": 1839
1531
+ },
1532
+ {
1533
+ "path": "source/Transcript_convertGenomeCigar.cpp",
1534
+ "sha256": "0f75b8de539502d8be1984badc5818454c6f021dbbb799f17da5ea4a3c4013f5",
1535
+ "language": "C++",
1536
+ "lines": 161,
1537
+ "truncated": false,
1538
+ "block": 3,
1539
+ "row": 2721
1540
+ },
1541
+ {
1542
+ "path": "source/Transcript_generateCigarP.cpp",
1543
+ "sha256": "bcd1d502a1c60a3abe74df0d860d667778b2af878f60d557965328ff532d3833",
1544
+ "language": "C++",
1545
+ "lines": 63,
1546
+ "truncated": false,
1547
+ "block": 3,
1548
+ "row": 1990
1549
+ },
1550
+ {
1551
+ "path": "source/Transcript_transformGenome.cpp",
1552
+ "sha256": "c4dbd9342ab970d9bc345f130fcfc11c839335931c40153b410ec6a2c46d9019",
1553
+ "language": "C++",
1554
+ "lines": 167,
1555
+ "truncated": false,
1556
+ "block": 3,
1557
+ "row": 2739
1558
+ },
1559
+ {
1560
+ "path": "source/Transcript_variationAdjust.cpp",
1561
+ "sha256": "c8d8869163604efedd36bf36b779e3fa3241def43982702e91a3e40fd9cefe41",
1562
+ "language": "C++",
1563
+ "lines": 74,
1564
+ "truncated": false,
1565
+ "block": 3,
1566
+ "row": 1884
1567
+ },
1568
+ {
1569
+ "path": "source/Transcript_variationOutput.cpp",
1570
+ "sha256": "69eb6a8b6a64a6837bb743ce3252fe580da5c2bf59d60937f12d0820cf53bf60",
1571
+ "language": "C++",
1572
+ "lines": 6,
1573
+ "truncated": false,
1574
+ "block": 3,
1575
+ "row": 449
1576
+ },
1577
+ {
1578
+ "path": "source/Transcriptome.cpp",
1579
+ "sha256": "ae4cc400fc192a39ea1e8e362649fb77d34d7a9eff91261254be3624258ac4db",
1580
+ "language": "C++",
1581
+ "lines": 190,
1582
+ "truncated": false,
1583
+ "block": 3,
1584
+ "row": 2789
1585
+ },
1586
+ {
1587
+ "path": "source/Transcriptome.h",
1588
+ "sha256": "eb91787a6c0f7869893fa0dd6d80f26c9c782af0cab238e2048183e8e2310173",
1589
+ "language": "C/C++",
1590
+ "lines": 63,
1591
+ "truncated": false,
1592
+ "block": 3,
1593
+ "row": 3854
1594
+ },
1595
+ {
1596
+ "path": "source/Transcriptome_alignExonOverlap.cpp",
1597
+ "sha256": "458c2118847938b4dc0c4e4bb4ace44575270c8f8e0f40cc77a025eceeac41cc",
1598
+ "language": "C++",
1599
+ "lines": 278,
1600
+ "truncated": false,
1601
+ "block": 3,
1602
+ "row": 3005
1603
+ },
1604
+ {
1605
+ "path": "source/Transcriptome_classifyAlign.cpp",
1606
+ "sha256": "447a9dfe2ccccffc48a90ced90198962756c077164321c5122548a6649be0bcb",
1607
+ "language": "C++",
1608
+ "lines": 267,
1609
+ "truncated": false,
1610
+ "block": 3,
1611
+ "row": 3076
1612
+ },
1613
+ {
1614
+ "path": "source/Transcriptome_geneCountsAddAlign.cpp",
1615
+ "sha256": "c5fdc5ac5a8d3bc55518093439a7fefa51c2c18eed013a08d61ea5a776a4dc9c",
1616
+ "language": "C++",
1617
+ "lines": 63,
1618
+ "truncated": false,
1619
+ "block": 3,
1620
+ "row": 2021
1621
+ },
1622
+ {
1623
+ "path": "source/Transcriptome_geneFullAlignOverlap.cpp",
1624
+ "sha256": "f14abf6f94645d69f10cafa1d9b27bfbe1ccd2f1f6f84b9a54324963ea4cadbc",
1625
+ "language": "C++",
1626
+ "lines": 56,
1627
+ "truncated": false,
1628
+ "block": 3,
1629
+ "row": 1895
1630
+ },
1631
+ {
1632
+ "path": "source/Transcriptome_geneFullAlignOverlap_ExonOverIntron.cpp",
1633
+ "sha256": "1d8412c4e189db492117a1a624718f87acebd7e2fb636d50d1f27fe409685565",
1634
+ "language": "C++",
1635
+ "lines": 43,
1636
+ "truncated": false,
1637
+ "block": 3,
1638
+ "row": 1716
1639
+ },
1640
+ {
1641
+ "path": "source/Transcriptome_quantAlign.cpp",
1642
+ "sha256": "0deb0526f49394d92d2be22857a7c7a0632129f066fdaadcc621343996570e5b",
1643
+ "language": "C++",
1644
+ "lines": 114,
1645
+ "truncated": false,
1646
+ "block": 3,
1647
+ "row": 2564
1648
+ },
1649
+ {
1650
+ "path": "source/Variation.cpp",
1651
+ "sha256": "90528f56ff60b117003e63d27bac3e485bd9d6f74e660a07264490da34e2fd7e",
1652
+ "language": "C++",
1653
+ "lines": 157,
1654
+ "truncated": false,
1655
+ "block": 3,
1656
+ "row": 2695
1657
+ },
1658
+ {
1659
+ "path": "source/Variation.h",
1660
+ "sha256": "15b097ed4b10486856e028e0fb5bc68483384d4cb0a22444c557d26d32ea7c0e",
1661
+ "language": "C/C++",
1662
+ "lines": 53,
1663
+ "truncated": false,
1664
+ "block": 3,
1665
+ "row": 3644
1666
+ },
1667
+ {
1668
+ "path": "source/bamRemoveDuplicates.cpp",
1669
+ "sha256": "f1556e188766a9d21c79bcca2ac9bb4db8c4f83aefec2c3ffcd324e4beefcf48",
1670
+ "language": "C++",
1671
+ "lines": 271,
1672
+ "truncated": false,
1673
+ "block": 3,
1674
+ "row": 3012
1675
+ },
1676
+ {
1677
+ "path": "source/bamRemoveDuplicates.h",
1678
+ "sha256": "59a3b90a6aa438a291353717112b741d68438bfe6dfbf7ece44585c433418f60",
1679
+ "language": "C/C++",
1680
+ "lines": 10,
1681
+ "truncated": false,
1682
+ "block": 3,
1683
+ "row": 3346
1684
+ },
1685
+ {
1686
+ "path": "source/bamSortByCoordinate.cpp",
1687
+ "sha256": "d9aa60ea1ae0034911a09f177f89e20d7aac32282e3ee72aed67f28107bcc359",
1688
+ "language": "C++",
1689
+ "lines": 97,
1690
+ "truncated": false,
1691
+ "block": 3,
1692
+ "row": 2487
1693
+ },
1694
+ {
1695
+ "path": "source/bamSortByCoordinate.h",
1696
+ "sha256": "cebc4ef31bd324ad24609958f8be3c77c9984ef3fabb65c3bf5cdd7b2bfa1721",
1697
+ "language": "C/C++",
1698
+ "lines": 11,
1699
+ "truncated": false,
1700
+ "block": 3,
1701
+ "row": 3356
1702
+ },
1703
+ {
1704
+ "path": "source/bam_cat.c",
1705
+ "sha256": "8ceb77529243c3c0738dd027630b94924756ac7b6d434d907edb7498fc509a2f",
1706
+ "language": "C",
1707
+ "lines": 143,
1708
+ "truncated": false,
1709
+ "block": 3,
1710
+ "row": 128
1711
+ },
1712
+ {
1713
+ "path": "source/bam_cat.h",
1714
+ "sha256": "d730a66e4059292b7fc2d00b4666facb3eb28637a89fef8754ba6189f7f2ebc7",
1715
+ "language": "C/C++",
1716
+ "lines": 8,
1717
+ "truncated": false,
1718
+ "block": 3,
1719
+ "row": 3329
1720
+ },
1721
+ {
1722
+ "path": "source/binarySearch2.cpp",
1723
+ "sha256": "f793e8bca4d26019727865c8145d1018839c34ce41a495787557bf7843217a50",
1724
+ "language": "C++",
1725
+ "lines": 43,
1726
+ "truncated": false,
1727
+ "block": 3,
1728
+ "row": 1122
1729
+ },
1730
+ {
1731
+ "path": "source/binarySearch2.h",
1732
+ "sha256": "1e6c025ec01771c966ee3773472a440e34e77dad07b5be9d542d05adea3a6af7",
1733
+ "language": "C/C++",
1734
+ "lines": 7,
1735
+ "truncated": false,
1736
+ "block": 3,
1737
+ "row": 3327
1738
+ },
1739
+ {
1740
+ "path": "source/blocksOverlap.cpp",
1741
+ "sha256": "cd232640757e849b419db19d127548375b48dfdb8330b31edda63e4e5b3cbdb1",
1742
+ "language": "C++",
1743
+ "lines": 41,
1744
+ "truncated": false,
1745
+ "block": 3,
1746
+ "row": 1427
1747
+ },
1748
+ {
1749
+ "path": "source/blocksOverlap.h",
1750
+ "sha256": "359b6936ed394acbb6b3439b3cc4bdc97c6ba58ce48f6c4c49541620bd0c8e19",
1751
+ "language": "C/C++",
1752
+ "lines": 10,
1753
+ "truncated": false,
1754
+ "block": 3,
1755
+ "row": 3332
1756
+ },
1757
+ {
1758
+ "path": "source/extendAlign.cpp",
1759
+ "sha256": "1aa080441241c4ceb59ed7893a2b7b020b47b85683e41ab18bc27a1df6d69213",
1760
+ "language": "C++",
1761
+ "lines": 93,
1762
+ "truncated": false,
1763
+ "block": 3,
1764
+ "row": 1952
1765
+ },
1766
+ {
1767
+ "path": "source/extendAlign.h",
1768
+ "sha256": "dd2e1f549c4cb00a4c482ecc812046b8839f97a14b44ceba19c5826b778c3368",
1769
+ "language": "C/C++",
1770
+ "lines": 6,
1771
+ "truncated": false,
1772
+ "block": 3,
1773
+ "row": 3355
1774
+ },
1775
+ {
1776
+ "path": "source/funCompareUintAndSuffixes.cpp",
1777
+ "sha256": "e0f8f2444d36f3e07405d1f64267030a9ab255c52c9dc5df4db9b10b124b53a4",
1778
+ "language": "C++",
1779
+ "lines": 40,
1780
+ "truncated": false,
1781
+ "block": 3,
1782
+ "row": 1431
1783
+ },
1784
+ {
1785
+ "path": "source/funCompareUintAndSuffixes.h",
1786
+ "sha256": "cf7548918f72949df43f894df79dbcb97c4169907cb5b4248637cfc84d48a420",
1787
+ "language": "C/C++",
1788
+ "lines": 11,
1789
+ "truncated": false,
1790
+ "block": 3,
1791
+ "row": 3357
1792
+ },
1793
+ {
1794
+ "path": "source/funCompareUintAndSuffixesMemcmp.cpp",
1795
+ "sha256": "2ba6cf2880e039e2da812adad6e44a4216ad791035f83650b03de91f08e0e28d",
1796
+ "language": "C++",
1797
+ "lines": 33,
1798
+ "truncated": false,
1799
+ "block": 3,
1800
+ "row": 1335
1801
+ },
1802
+ {
1803
+ "path": "source/funCompareUintAndSuffixesMemcmp.h",
1804
+ "sha256": "1dfffd61f5553d0c0d49589d0a6984b70855c5e23d654fd0ac7b6e33df04b6af",
1805
+ "language": "C/C++",
1806
+ "lines": 10,
1807
+ "truncated": false,
1808
+ "block": 3,
1809
+ "row": 3367
1810
+ },
1811
+ {
1812
+ "path": "source/funPrimaryAlignMark.cpp",
1813
+ "sha256": "19d23ed8a6eb88ef2bbe8b2160222b0e6f10dfcd4741657a424d7dc3c996f969",
1814
+ "language": "C++",
1815
+ "lines": 43,
1816
+ "truncated": false,
1817
+ "block": 3,
1818
+ "row": 1795
1819
+ },
1820
+ {
1821
+ "path": "source/funPrimaryAlignMark.h",
1822
+ "sha256": "fb971da7701cf692cb4ff72e0fc2db3d55cd9f38df218e1897e3946d4de608c9",
1823
+ "language": "C/C++",
1824
+ "lines": 5,
1825
+ "truncated": false,
1826
+ "block": 3,
1827
+ "row": 3354
1828
+ },
1829
+ {
1830
+ "path": "source/genomeGenerate.h",
1831
+ "sha256": "abbe731b99b1de32bce2a8b899ee384f008c71883f3b144d4d36131b463cacae",
1832
+ "language": "C/C++",
1833
+ "lines": 4,
1834
+ "truncated": false,
1835
+ "block": 3,
1836
+ "row": 3319
1837
+ },
1838
+ {
1839
+ "path": "source/genomeParametersWrite.cpp",
1840
+ "sha256": "58c6c41029ef72c46adec18e797272a8b4e9255c98b27c866af3852025b6ebda",
1841
+ "language": "C++",
1842
+ "lines": 45,
1843
+ "truncated": false,
1844
+ "block": 3,
1845
+ "row": 1818
1846
+ },
1847
+ {
1848
+ "path": "source/genomeParametersWrite.h",
1849
+ "sha256": "00b4452e9b7191c305f31aac6c458110e9277077e3804645745fd901ca63ab85",
1850
+ "language": "C/C++",
1851
+ "lines": 9,
1852
+ "truncated": false,
1853
+ "block": 3,
1854
+ "row": 3342
1855
+ },
1856
+ {
1857
+ "path": "source/genomeSAindex.cpp",
1858
+ "sha256": "668659d86c76e26e8ea4dd1049f50fc3751f495b8926a8e218d2825a39daffa2",
1859
+ "language": "C++",
1860
+ "lines": 217,
1861
+ "truncated": false,
1862
+ "block": 3,
1863
+ "row": 2887
1864
+ },
1865
+ {
1866
+ "path": "source/genomeSAindex.h",
1867
+ "sha256": "c2d72c445f4d691ca4bd62f1a28d36076cfd54497db9caf4983faaba22da5ade",
1868
+ "language": "C/C++",
1869
+ "lines": 11,
1870
+ "truncated": false,
1871
+ "block": 3,
1872
+ "row": 3409
1873
+ },
1874
+ {
1875
+ "path": "source/genomeScanFastaFiles.cpp",
1876
+ "sha256": "313eab6f7bdc19049c5e90bcc25b8ee0e87d7d466eff7dc61900788017720193",
1877
+ "language": "C++",
1878
+ "lines": 92,
1879
+ "truncated": false,
1880
+ "block": 3,
1881
+ "row": 2375
1882
+ },
1883
+ {
1884
+ "path": "source/genomeScanFastaFiles.h",
1885
+ "sha256": "576c9875252f06533361d031fd6896cd82150ae79916120cc3dfcdc41259f4e3",
1886
+ "language": "C/C++",
1887
+ "lines": 10,
1888
+ "truncated": false,
1889
+ "block": 3,
1890
+ "row": 3344
1891
+ },
1892
+ {
1893
+ "path": "source/htslib/bgzf.c",
1894
+ "sha256": "27871beb0e540f1e13921f781af079f94a818e20c1c9acea3ea1031b3a7e7684",
1895
+ "language": "C",
1896
+ "lines": 1085,
1897
+ "truncated": false,
1898
+ "block": 3,
1899
+ "row": 309
1900
+ },
1901
+ {
1902
+ "path": "source/htslib/bgzip.c",
1903
+ "sha256": "346422dd9abb2a00ddd34bcc2ad37a061254dea4451ab78451aa731d2d27635b",
1904
+ "language": "C",
1905
+ "lines": 283,
1906
+ "truncated": false,
1907
+ "block": 3,
1908
+ "row": 221
1909
+ },
1910
+ {
1911
+ "path": "source/htslib/config.h",
1912
+ "sha256": "84eb607a340a356e7bc8a88992b505277c103bd7e1746880800154a44e8682c3",
1913
+ "language": "C/C++",
1914
+ "lines": 3,
1915
+ "truncated": false,
1916
+ "block": 3,
1917
+ "row": 3318
1918
+ },
1919
+ {
1920
+ "path": "source/htslib/cram/cram.h",
1921
+ "sha256": "60cbfd6f7d39df134c1256457d554d7a1b9d09c7fafb168c07ee1c3b238a0e88",
1922
+ "language": "C/C++",
1923
+ "lines": 66,
1924
+ "truncated": false,
1925
+ "block": 3,
1926
+ "row": 3845
1927
+ },
1928
+ {
1929
+ "path": "source/htslib/cram/cram_codecs.c",
1930
+ "sha256": "06b5f71b248a5ae943f793922185aa2366350456d7afeda2f9f3485b0ce286d3",
1931
+ "language": "C",
1932
+ "lines": 1764,
1933
+ "truncated": false,
1934
+ "block": 3,
1935
+ "row": 320
1936
+ },
1937
+ {
1938
+ "path": "source/htslib/cram/cram_codecs.h",
1939
+ "sha256": "aa9ba7e4ca7251326bd1f042b69627d3d2fce76c5e8044389a4b71a13274e618",
1940
+ "language": "C/C++",
1941
+ "lines": 155,
1942
+ "truncated": false,
1943
+ "block": 3,
1944
+ "row": 4075
1945
+ },
1946
+ {
1947
+ "path": "source/htslib/cram/cram_decode.c",
1948
+ "sha256": "569a2c861c3d53e9c42db54fc91f9da2d09bc251579b94611c56d1890aa3a0e6",
1949
+ "language": "C",
1950
+ "lines": 2138,
1951
+ "truncated": false,
1952
+ "block": 3,
1953
+ "row": 326
1954
+ },
1955
+ {
1956
+ "path": "source/htslib/cram/cram_decode.h",
1957
+ "sha256": "0e725c07424d8ae991e10739e15abaac93e1965c71c57b1f8192bc9e0a7b2e2a",
1958
+ "language": "C/C++",
1959
+ "lines": 112,
1960
+ "truncated": false,
1961
+ "block": 3,
1962
+ "row": 3975
1963
+ },
1964
+ {
1965
+ "path": "source/htslib/cram/cram_encode.c",
1966
+ "sha256": "41d9758226a547ba4d6296e32e05345c8b09512874d4afbb889494ba610d9bb1",
1967
+ "language": "C",
1968
+ "lines": 2630,
1969
+ "truncated": false,
1970
+ "block": 3,
1971
+ "row": 330
1972
+ },
1973
+ {
1974
+ "path": "source/htslib/cram/cram_encode.h",
1975
+ "sha256": "5554c37504d4ce1c0681fce5a573513212d5e043e1217aca844b2a583465537d",
1976
+ "language": "C/C++",
1977
+ "lines": 105,
1978
+ "truncated": false,
1979
+ "block": 3,
1980
+ "row": 3951
1981
+ },
1982
+ {
1983
+ "path": "source/htslib/cram/cram_index.c",
1984
+ "sha256": "72ebd8c444c65326dc5c637586c34977999037e58714712c74e6a6fe7f9257e1",
1985
+ "language": "C",
1986
+ "lines": 503,
1987
+ "truncated": false,
1988
+ "block": 3,
1989
+ "row": 253
1990
+ },
1991
+ {
1992
+ "path": "source/htslib/cram/cram_index.h",
1993
+ "sha256": "7666b6941ffd809fc91320519cfdaf05a60c22c443c59898e12c7243b8d9843d",
1994
+ "language": "C/C++",
1995
+ "lines": 98,
1996
+ "truncated": false,
1997
+ "block": 3,
1998
+ "row": 3940
1999
+ },
2000
+ {
2001
+ "path": "source/htslib/cram/cram_io.c",
2002
+ "sha256": "39839fc3a3eefe63d3579129aad8747f46e23cb53ca76f2d0a57209ed5d8d989",
2003
+ "language": "C",
2004
+ "lines": 3652,
2005
+ "truncated": false,
2006
+ "block": 3,
2007
+ "row": 337
2008
+ },
2009
+ {
2010
+ "path": "source/htslib/cram/cram_io.h",
2011
+ "sha256": "e6d849d73deb75e56e661f26e34cb3e29f3de44aa260578d7a0c2dce33dbfca8",
2012
+ "language": "C/C++",
2013
+ "lines": 532,
2014
+ "truncated": false,
2015
+ "block": 3,
2016
+ "row": 4446
2017
+ },
2018
+ {
2019
+ "path": "source/htslib/cram/cram_samtools.c",
2020
+ "sha256": "38e64fe182fb228e03b482d5e86a84b1dbbafe3303c491e8538178bc18e824f8",
2021
+ "language": "C",
2022
+ "lines": 144,
2023
+ "truncated": false,
2024
+ "block": 3,
2025
+ "row": 131
2026
+ },
2027
+ {
2028
+ "path": "source/htslib/cram/cram_samtools.h",
2029
+ "sha256": "10e30fc368e34fef90ba819c7fce84882936b8d9af8a90e18bb62ee4dc4b2042",
2030
+ "language": "C/C++",
2031
+ "lines": 97,
2032
+ "truncated": false,
2033
+ "block": 3,
2034
+ "row": 3971
2035
+ },
2036
+ {
2037
+ "path": "source/htslib/cram/cram_stats.c",
2038
+ "sha256": "07168d5a426724d7961ec60d7ac9c91324541337cc7019709bf7f6d5a0b04648",
2039
+ "language": "C",
2040
+ "lines": 357,
2041
+ "truncated": false,
2042
+ "block": 3,
2043
+ "row": 227
2044
+ },
2045
+ {
2046
+ "path": "source/htslib/cram/cram_stats.h",
2047
+ "sha256": "ce86e85c2aa3931ac0ab6f9be7e9964ad0bda7a6f70b6745b897b2e90c20b3ab",
2048
+ "language": "C/C++",
2049
+ "lines": 59,
2050
+ "truncated": false,
2051
+ "block": 3,
2052
+ "row": 3844
2053
+ },
2054
+ {
2055
+ "path": "source/htslib/cram/cram_structs.h",
2056
+ "sha256": "2d29eba8edab9f17b9588ffac43cc051f7771bfb0a7ab536232598cca023c77c",
2057
+ "language": "C/C++",
2058
+ "lines": 752,
2059
+ "truncated": false,
2060
+ "block": 3,
2061
+ "row": 4531
2062
+ },
2063
+ {
2064
+ "path": "source/htslib/cram/files.c",
2065
+ "sha256": "8957b94a2db8218ab97848510c973453f56927478f0a5b64fc100698fc22d358",
2066
+ "language": "C",
2067
+ "lines": 76,
2068
+ "truncated": false,
2069
+ "block": 3,
2070
+ "row": 72
2071
+ },
2072
+ {
2073
+ "path": "source/htslib/cram/mFILE.c",
2074
+ "sha256": "9a5264a3b538e3e19d4d15721fce3b2e9f288576d4e0c7d939b5df9aee92a39a",
2075
+ "language": "C",
2076
+ "lines": 634,
2077
+ "truncated": false,
2078
+ "block": 3,
2079
+ "row": 272
2080
+ },
2081
+ {
2082
+ "path": "source/htslib/cram/mFILE.h",
2083
+ "sha256": "a89fe6b07c2a0abbd9bf58b11d4d38dca385923eff8a972e49c470089dc8b489",
2084
+ "language": "C/C++",
2085
+ "lines": 88,
2086
+ "truncated": false,
2087
+ "block": 3,
2088
+ "row": 3919
2089
+ },
2090
+ {
2091
+ "path": "source/htslib/cram/md5.c",
2092
+ "sha256": "dceae37d45d1230b13e9269aa6269b68894aae066db389a0161921939d231802",
2093
+ "language": "C",
2094
+ "lines": 295,
2095
+ "truncated": false,
2096
+ "block": 3,
2097
+ "row": 212
2098
+ },
2099
+ {
2100
+ "path": "source/htslib/cram/md5.h",
2101
+ "sha256": "b48b94d9a3274588cc0d1b1fbe1cca840ca6e70633857212617f676166dd06ec",
2102
+ "language": "C/C++",
2103
+ "lines": 54,
2104
+ "truncated": false,
2105
+ "block": 3,
2106
+ "row": 3668
2107
+ },
2108
+ {
2109
+ "path": "source/htslib/cram/misc.h",
2110
+ "sha256": "920d1b1236f6fd855f490bb82e8fc9dd3907f9c0d4db642cc7c6334b3dbcc11e",
2111
+ "language": "C/C++",
2112
+ "lines": 110,
2113
+ "truncated": false,
2114
+ "block": 3,
2115
+ "row": 4039
2116
+ },
2117
+ {
2118
+ "path": "source/htslib/cram/open_trace_file.c",
2119
+ "sha256": "5f449051460fda5b392670dc0f6724f2b8f8ef9236d888ac717f959311839271",
2120
+ "language": "C",
2121
+ "lines": 386,
2122
+ "truncated": false,
2123
+ "block": 3,
2124
+ "row": 242
2125
+ },
2126
+ {
2127
+ "path": "source/htslib/cram/open_trace_file.h",
2128
+ "sha256": "9a38ed161ee98c6b597fa692293771de30ffa04822088928b9b94d97c4b72924",
2129
+ "language": "C/C++",
2130
+ "lines": 115,
2131
+ "truncated": false,
2132
+ "block": 3,
2133
+ "row": 4070
2134
+ },
2135
+ {
2136
+ "path": "source/htslib/cram/os.h",
2137
+ "sha256": "66a73e185c901fa3e7977666c4a30b206117fea1a741bdc3c09aa1ec72bdaaab",
2138
+ "language": "C/C++",
2139
+ "lines": 306,
2140
+ "truncated": false,
2141
+ "block": 3,
2142
+ "row": 4312
2143
+ },
2144
+ {
2145
+ "path": "source/htslib/cram/pooled_alloc.c",
2146
+ "sha256": "a71072ac81709b2c320560d0d894935f5b1d21c30c670a5befe0a77c4412db31",
2147
+ "language": "C",
2148
+ "lines": 170,
2149
+ "truncated": false,
2150
+ "block": 3,
2151
+ "row": 115
2152
+ },
2153
+ {
2154
+ "path": "source/htslib/cram/pooled_alloc.h",
2155
+ "sha256": "9a30517982d6ec7dbb31d8b95472901dea374b2f96e78b95847b6bf6af7993ec",
2156
+ "language": "C/C++",
2157
+ "lines": 56,
2158
+ "truncated": false,
2159
+ "block": 3,
2160
+ "row": 3811
2161
+ },
2162
+ {
2163
+ "path": "source/htslib/cram/sam_header.c",
2164
+ "sha256": "4cc82311770e493669796a1f99701cff5df011e12ed715e156e65262f4a2e63f",
2165
+ "language": "C",
2166
+ "lines": 1222,
2167
+ "truncated": false,
2168
+ "block": 3,
2169
+ "row": 306
2170
+ },
2171
+ {
2172
+ "path": "source/htslib/cram/sam_header.h",
2173
+ "sha256": "eca37855be63b131aef1351065505d60d8a6e5bfde65d38c5985edee4bd1c439",
2174
+ "language": "C/C++",
2175
+ "lines": 452,
2176
+ "truncated": false,
2177
+ "block": 3,
2178
+ "row": 4422
2179
+ },
2180
+ {
2181
+ "path": "source/htslib/cram/string_alloc.c",
2182
+ "sha256": "0e6be70eaf51078638ff691ac15fc0ba08b9172a33bfe75e6024aaf880cc0446",
2183
+ "language": "C",
2184
+ "lines": 153,
2185
+ "truncated": false,
2186
+ "block": 3,
2187
+ "row": 114
2188
+ },
2189
+ {
2190
+ "path": "source/htslib/cram/string_alloc.h",
2191
+ "sha256": "df1cfcc4e6c799ae462377adfe89182c1b9bec8461d007e4161ad98b0177741b",
2192
+ "language": "C/C++",
2193
+ "lines": 69,
2194
+ "truncated": false,
2195
+ "block": 3,
2196
+ "row": 3847
2197
+ },
2198
+ {
2199
+ "path": "source/htslib/cram/thread_pool.c",
2200
+ "sha256": "9ac9938630b94becfdfadf1e556f01975bdf93439d4a846750b5bb5a49b57c0d",
2201
+ "language": "C",
2202
+ "lines": 713,
2203
+ "truncated": false,
2204
+ "block": 3,
2205
+ "row": 275
2206
+ },
2207
+ {
2208
+ "path": "source/htslib/cram/thread_pool.h",
2209
+ "sha256": "b30170badc7b0088ac2ba51d4ec925f1af207e7b5f36c3d02366b74b0b1138de",
2210
+ "language": "C/C++",
2211
+ "lines": 197,
2212
+ "truncated": false,
2213
+ "block": 3,
2214
+ "row": 4165
2215
+ },
2216
+ {
2217
+ "path": "source/htslib/cram/vlen.c",
2218
+ "sha256": "a8ddd7f2e9f4e6965d8212f2bf587ed37c012e5dcf00332f5fd3377b81d4d79a",
2219
+ "language": "C",
2220
+ "lines": 432,
2221
+ "truncated": false,
2222
+ "block": 3,
2223
+ "row": 250
2224
+ },
2225
+ {
2226
+ "path": "source/htslib/cram/vlen.h",
2227
+ "sha256": "c64ffb293343f03b5c24bce87557e344c2e28efdebf6cd62ecbed03c68bae05a",
2228
+ "language": "C/C++",
2229
+ "lines": 48,
2230
+ "truncated": false,
2231
+ "block": 3,
2232
+ "row": 3755
2233
+ },
2234
+ {
2235
+ "path": "source/htslib/cram/zfio.c",
2236
+ "sha256": "7c6867443ee4940d86dce4cb5f25b757d5393b4c55cfd3581e70aed70df7490e",
2237
+ "language": "C",
2238
+ "lines": 185,
2239
+ "truncated": false,
2240
+ "block": 3,
2241
+ "row": 135
2242
+ },
2243
+ {
2244
+ "path": "source/htslib/cram/zfio.h",
2245
+ "sha256": "444f5917a615bb560ded533b1798536dcc912598a02b03579a22897fb7e056ca",
2246
+ "language": "C/C++",
2247
+ "lines": 54,
2248
+ "truncated": false,
2249
+ "block": 3,
2250
+ "row": 3807
2251
+ },
2252
+ {
2253
+ "path": "source/htslib/faidx.c",
2254
+ "sha256": "d28f3109cee85870bb29d48d487c3460cb7f75f2bb5de91da443dcfba5f87bee",
2255
+ "language": "C",
2256
+ "lines": 421,
2257
+ "truncated": false,
2258
+ "block": 3,
2259
+ "row": 240
2260
+ },
2261
+ {
2262
+ "path": "source/htslib/hfile.c",
2263
+ "sha256": "f235267649b1fae420ec58b93ea59e474dcfdfc311de39316be09c630c00a27a",
2264
+ "language": "C",
2265
+ "lines": 526,
2266
+ "truncated": false,
2267
+ "block": 3,
2268
+ "row": 264
2269
+ },
2270
+ {
2271
+ "path": "source/htslib/hfile_internal.h",
2272
+ "sha256": "70fc91f4844cc7ee3db62a1a7042faa154c5c0fc624e15290fa1e7a58dda4e58",
2273
+ "language": "C/C++",
2274
+ "lines": 75,
2275
+ "truncated": false,
2276
+ "block": 3,
2277
+ "row": 3978
2278
+ },
2279
+ {
2280
+ "path": "source/htslib/hfile_net.c",
2281
+ "sha256": "52e4f23a77a1a7d83caf1d1b905fc6330509ae338e0519b85a98953c5db36812",
2282
+ "language": "C",
2283
+ "lines": 99,
2284
+ "truncated": false,
2285
+ "block": 3,
2286
+ "row": 86
2287
+ },
2288
+ {
2289
+ "path": "source/htslib/hts.c",
2290
+ "sha256": "65817d5ea8b25ab7249432d12d98316c08a76a79fdab973705b62d5bb8b888dd",
2291
+ "language": "C",
2292
+ "lines": 1326,
2293
+ "truncated": false,
2294
+ "block": 3,
2295
+ "row": 315
2296
+ },
2297
+ {
2298
+ "path": "source/htslib/htslib/bgzf.h",
2299
+ "sha256": "9638516c0496f19347ff33101b581e6a90e24d185b41679a81de0c23d5e35568",
2300
+ "language": "C/C++",
2301
+ "lines": 313,
2302
+ "truncated": false,
2303
+ "block": 3,
2304
+ "row": 4321
2305
+ },
2306
+ {
2307
+ "path": "source/htslib/htslib/faidx.h",
2308
+ "sha256": "f617f16520c0ac65fab5348c784fbba53cacfea8be5750f9f1df75de9526bc9c",
2309
+ "language": "C/C++",
2310
+ "lines": 112,
2311
+ "truncated": false,
2312
+ "block": 3,
2313
+ "row": 3996
2314
+ },
2315
+ {
2316
+ "path": "source/htslib/htslib/hfile.h",
2317
+ "sha256": "6c7632b5e2d0b62ab17fa908b01877259d7ab8f294967afda9dd56b5ca77fd90",
2318
+ "language": "C/C++",
2319
+ "lines": 204,
2320
+ "truncated": false,
2321
+ "block": 3,
2322
+ "row": 4179
2323
+ },
2324
+ {
2325
+ "path": "source/htslib/htslib/hts.h",
2326
+ "sha256": "26d9a2fc09d6a347d8a96fa6351aa062d232d3ef51fbc1d8bff60d9bf3f30709",
2327
+ "language": "C/C++",
2328
+ "lines": 305,
2329
+ "truncated": false,
2330
+ "block": 3,
2331
+ "row": 4306
2332
+ },
2333
+ {
2334
+ "path": "source/htslib/htslib/hts_defs.h",
2335
+ "sha256": "4277eefdcef61c83dad25af674f6f194fdacefd964fd171d7bfabd03b6ce3c1e",
2336
+ "language": "C/C++",
2337
+ "lines": 47,
2338
+ "truncated": false,
2339
+ "block": 3,
2340
+ "row": 3728
2341
+ },
2342
+ {
2343
+ "path": "source/htslib/htslib/kfunc.h",
2344
+ "sha256": "a3ee46dbb9957217e1d43d024de4a45f5b42459066c0a819e3016ecbea3c9160",
2345
+ "language": "C/C++",
2346
+ "lines": 49,
2347
+ "truncated": false,
2348
+ "block": 3,
2349
+ "row": 3652
2350
+ },
2351
+ {
2352
+ "path": "source/htslib/htslib/khash.h",
2353
+ "sha256": "41e778a9b0d79addccb83263667533ff2af81a8836da7edc6160dfade150968a",
2354
+ "language": "C/C++",
2355
+ "lines": 617,
2356
+ "truncated": false,
2357
+ "block": 3,
2358
+ "row": 4527
2359
+ },
2360
+ {
2361
+ "path": "source/htslib/htslib/khash_str2int.h",
2362
+ "sha256": "26d38be1be71bf8c8568b2f3d213e6bbcbd26184aa498de6f67cf87b2710da19",
2363
+ "language": "C/C++",
2364
+ "lines": 98,
2365
+ "truncated": false,
2366
+ "block": 3,
2367
+ "row": 3859
2368
+ },
2369
+ {
2370
+ "path": "source/htslib/htslib/klist.h",
2371
+ "sha256": "47368e3dd36028d096bc5106d31bd097f360b3b5e58f0c785f383c1adc53317a",
2372
+ "language": "C/C++",
2373
+ "lines": 121,
2374
+ "truncated": false,
2375
+ "block": 3,
2376
+ "row": 4063
2377
+ },
2378
+ {
2379
+ "path": "source/htslib/htslib/knetfile.h",
2380
+ "sha256": "c874934128c551fc0bc9bbe65d4605cf537780ac088c458687b572fd4eec42e7",
2381
+ "language": "C/C++",
2382
+ "lines": 75,
2383
+ "truncated": false,
2384
+ "block": 3,
2385
+ "row": 3701
2386
+ },
2387
+ {
2388
+ "path": "source/htslib/htslib/kseq.h",
2389
+ "sha256": "bee65d55a4910f51966188a118f4b8a50b9e75e972108a043a8765eec8341a6f",
2390
+ "language": "C/C++",
2391
+ "lines": 253,
2392
+ "truncated": false,
2393
+ "block": 3,
2394
+ "row": 4293
2395
+ },
2396
+ {
2397
+ "path": "source/htslib/htslib/ksort.h",
2398
+ "sha256": "bd5fba9d83217ef6af40fc0580247ede47af1f6a436a6cf1b818e41d7b43effa",
2399
+ "language": "C/C++",
2400
+ "lines": 285,
2401
+ "truncated": false,
2402
+ "block": 3,
2403
+ "row": 4332
2404
+ },
2405
+ {
2406
+ "path": "source/htslib/htslib/kstdint.h",
2407
+ "sha256": "9c1d2b38b5d4a756ede1608b114cad019d8cd168c0578fe6b0a897f32c7b4d21",
2408
+ "language": "C/C++",
2409
+ "lines": 64,
2410
+ "truncated": false,
2411
+ "block": 3,
2412
+ "row": 3846
2413
+ },
2414
+ {
2415
+ "path": "source/htslib/htslib/kstring.h",
2416
+ "sha256": "26025b699925289407f2eb0d8f436aceed28d105bd9b329c4547c0b3aafa3ba4",
2417
+ "language": "C/C++",
2418
+ "lines": 270,
2419
+ "truncated": false,
2420
+ "block": 3,
2421
+ "row": 4183
2422
+ },
2423
+ {
2424
+ "path": "source/htslib/htslib/sam.h",
2425
+ "sha256": "edd76b4e9cf78c2d9ad840182e387b91f9dcd6f00ffcf88ee0f59ddfc954391c",
2426
+ "language": "C/C++",
2427
+ "lines": 401,
2428
+ "truncated": false,
2429
+ "block": 3,
2430
+ "row": 4419
2431
+ },
2432
+ {
2433
+ "path": "source/htslib/htslib/synced_bcf_reader.h",
2434
+ "sha256": "d0b63c05fd5bc99f7496cb1277acdc7abe48cce26c64f23a9098f79ffda94823",
2435
+ "language": "C/C++",
2436
+ "lines": 255,
2437
+ "truncated": false,
2438
+ "block": 3,
2439
+ "row": 4350
2440
+ },
2441
+ {
2442
+ "path": "source/htslib/htslib/tbx.h",
2443
+ "sha256": "16d4d2f250c59f272a1717b849693d6356ebb94dd2c07703c668a4dbec47cc21",
2444
+ "language": "C/C++",
2445
+ "lines": 52,
2446
+ "truncated": false,
2447
+ "block": 3,
2448
+ "row": 3662
2449
+ },
2450
+ {
2451
+ "path": "source/htslib/htslib/vcf.h",
2452
+ "sha256": "3486609897d78270a319877af726690f566872e35f8fe3004482e5b499f3c2e6",
2453
+ "language": "C/C++",
2454
+ "lines": 824,
2455
+ "truncated": false,
2456
+ "block": 3,
2457
+ "row": 4592
2458
+ },
2459
+ {
2460
+ "path": "source/htslib/htslib/vcf_sweep.h",
2461
+ "sha256": "8fdfdc20c7e8cac51f80cb7b35965bcbd5c95408e899d79a30ee191705938407",
2462
+ "language": "C/C++",
2463
+ "lines": 15,
2464
+ "truncated": false,
2465
+ "block": 3,
2466
+ "row": 3384
2467
+ },
2468
+ {
2469
+ "path": "source/htslib/htslib/vcfutils.h",
2470
+ "sha256": "389059e7d0b6d00070fb50c05202672164bb9cdf0fcecfd5b25fa890b0ab76c4",
2471
+ "language": "C/C++",
2472
+ "lines": 94,
2473
+ "truncated": false,
2474
+ "block": 3,
2475
+ "row": 3908
2476
+ },
2477
+ {
2478
+ "path": "source/htslib/kfunc.c",
2479
+ "sha256": "b5025ccdfc1ca51e7393c29a323f2b4c6074c612addb46199075d06e9f0a9405",
2480
+ "language": "C",
2481
+ "lines": 254,
2482
+ "truncated": false,
2483
+ "block": 3,
2484
+ "row": 206
2485
+ },
2486
+ {
2487
+ "path": "source/htslib/knetfile.c",
2488
+ "sha256": "f7e7248d31751700c4314dc983fd8cb535ce6adad7b20d57903487f13d6b0778",
2489
+ "language": "C",
2490
+ "lines": 622,
2491
+ "truncated": false,
2492
+ "block": 3,
2493
+ "row": 286
2494
+ },
2495
+ {
2496
+ "path": "source/htslib/kstring.c",
2497
+ "sha256": "ad779c5886b130f565b0912300f11c7b1db86b0cedf94324fd70e771fef12c7b",
2498
+ "language": "C",
2499
+ "lines": 229,
2500
+ "truncated": false,
2501
+ "block": 3,
2502
+ "row": 156
2503
+ },
2504
+ {
2505
+ "path": "source/htslib/sam.c",
2506
+ "sha256": "ec9101874c9a528952759b65136bce1073553e0e66dbf48eac92c32f9a86699f",
2507
+ "language": "C",
2508
+ "lines": 1797,
2509
+ "truncated": false,
2510
+ "block": 3,
2511
+ "row": 324
2512
+ },
2513
+ {
2514
+ "path": "source/htslib/synced_bcf_reader.c",
2515
+ "sha256": "24b8bda691d6e39acd258c5545068e04f24be3f89ab2174a0088b758c1b348d3",
2516
+ "language": "C",
2517
+ "lines": 1183,
2518
+ "truncated": false,
2519
+ "block": 3,
2520
+ "row": 316
2521
+ },
2522
+ {
2523
+ "path": "source/htslib/tabix.c",
2524
+ "sha256": "22565252fbf98da8282fea5cdd31cff23851ba2182434eb577757d04d9bc4cbb",
2525
+ "language": "C",
2526
+ "lines": 374,
2527
+ "truncated": false,
2528
+ "block": 3,
2529
+ "row": 259
2530
+ },
2531
+ {
2532
+ "path": "source/htslib/tbx.c",
2533
+ "sha256": "00bb9fa5203e3c0d89539dcbd5bfcfcbf6a0a9318362c5daf3bf8f7e3b8184a0",
2534
+ "language": "C",
2535
+ "lines": 290,
2536
+ "truncated": false,
2537
+ "block": 3,
2538
+ "row": 202
2539
+ },
2540
+ {
2541
+ "path": "source/htslib/vcf.c",
2542
+ "sha256": "d2a3a111f77506f37d6b30226b237e72747cd33bc3b19dc9015bf4b20cff0f73",
2543
+ "language": "C",
2544
+ "lines": 2967,
2545
+ "truncated": false,
2546
+ "block": 3,
2547
+ "row": 338
2548
+ },
2549
+ {
2550
+ "path": "source/htslib/vcf_sweep.c",
2551
+ "sha256": "052e2a4e894f59e89e95dd7da8a73e446af68097916083b85e247ec06c5887ba",
2552
+ "language": "C",
2553
+ "lines": 158,
2554
+ "truncated": false,
2555
+ "block": 3,
2556
+ "row": 116
2557
+ },
2558
+ {
2559
+ "path": "source/htslib/vcfutils.c",
2560
+ "sha256": "4a1baffc6f61a5dda8855904ea00d2da9ab9f488e25c71e3c3d46e17ce6e8848",
2561
+ "language": "C",
2562
+ "lines": 642,
2563
+ "truncated": false,
2564
+ "block": 3,
2565
+ "row": 296
2566
+ },
2567
+ {
2568
+ "path": "source/insertSeqSA.cpp",
2569
+ "sha256": "30ec5822900f49e232ddd86e577cda63dfdbb1cecc61205a0d8dac31239d3273",
2570
+ "language": "C++",
2571
+ "lines": 319,
2572
+ "truncated": false,
2573
+ "block": 3,
2574
+ "row": 3069
2575
+ },
2576
+ {
2577
+ "path": "source/insertSeqSA.h",
2578
+ "sha256": "5b5aa11fbe3e0c58356e7097d235af1f82b7d9596473f18d49371861eb418264",
2579
+ "language": "C/C++",
2580
+ "lines": 11,
2581
+ "truncated": false,
2582
+ "block": 3,
2583
+ "row": 3375
2584
+ },
2585
+ {
2586
+ "path": "source/mapThreadsSpawn.cpp",
2587
+ "sha256": "b8ce2f8f64b5547ec56906a0cbd93eacebd329f24a23b597712c2de82c8898ef",
2588
+ "language": "C++",
2589
+ "lines": 33,
2590
+ "truncated": false,
2591
+ "block": 3,
2592
+ "row": 1660
2593
+ },
2594
+ {
2595
+ "path": "source/mapThreadsSpawn.h",
2596
+ "sha256": "ee3d09d827928d7d30fc4e3a70334a83e4220da8135ff6adc33c1fb6603eb26f",
2597
+ "language": "C/C++",
2598
+ "lines": 7,
2599
+ "truncated": false,
2600
+ "block": 3,
2601
+ "row": 3336
2602
+ },
2603
+ {
2604
+ "path": "source/opal/opal.cpp",
2605
+ "sha256": "87abdb0d848bf4466474082080cf6772b332744663197274070838e7d4bc88df",
2606
+ "language": "C++",
2607
+ "lines": 1568,
2608
+ "truncated": false,
2609
+ "block": 3,
2610
+ "row": 3284
2611
+ },
2612
+ {
2613
+ "path": "source/opal/opal.h",
2614
+ "sha256": "b13bb1f5367dad6556dae903f4d344bb5f4da05fb608744e170d5ed861c1aa24",
2615
+ "language": "C/C++",
2616
+ "lines": 171,
2617
+ "truncated": false,
2618
+ "block": 3,
2619
+ "row": 4265
2620
+ },
2621
+ {
2622
+ "path": "source/opal/simde_avx2.h",
2623
+ "sha256": "7870ed6e4856e8c08bcd9b8aca404783382642468e8dafdce9337baf08ef6761",
2624
+ "language": "C/C++",
2625
+ "lines": 5590,
2626
+ "truncated": true,
2627
+ "block": 3,
2628
+ "row": 4626
2629
+ },
2630
+ {
2631
+ "path": "source/outputSJ.cpp",
2632
+ "sha256": "744bc9102efdf4f68cd0a0f44dd28e71871659623d0ff771b9502255c76f262f",
2633
+ "language": "C++",
2634
+ "lines": 163,
2635
+ "truncated": false,
2636
+ "block": 3,
2637
+ "row": 2824
2638
+ },
2639
+ {
2640
+ "path": "source/outputSJ.h",
2641
+ "sha256": "06412e22e5166c09c1c2f9639f84f7c930d8246864fe887b488890ec2f82527c",
2642
+ "language": "C/C++",
2643
+ "lines": 4,
2644
+ "truncated": false,
2645
+ "block": 3,
2646
+ "row": 3324
2647
+ },
2648
+ {
2649
+ "path": "source/readBarcodeLoad.h",
2650
+ "sha256": "7ca46b463eaf4d32368af3999ede2212729f18a6d3a7c8b85af3892654e47750",
2651
+ "language": "C/C++",
2652
+ "lines": 9,
2653
+ "truncated": false,
2654
+ "block": 3,
2655
+ "row": 3340
2656
+ },
2657
+ {
2658
+ "path": "source/readLoad.cpp",
2659
+ "sha256": "696023e6827042ec507cf2ac4d84443643a50e598fbcc37831e00ae133bc5fc2",
2660
+ "language": "C++",
2661
+ "lines": 100,
2662
+ "truncated": false,
2663
+ "block": 3,
2664
+ "row": 2451
2665
+ },
2666
+ {
2667
+ "path": "source/readLoad.h",
2668
+ "sha256": "04ab96f887b47f722f67cd996256c01e9adc64c1e0e712136b5b3a3510ac0bee",
2669
+ "language": "C/C++",
2670
+ "lines": 12,
2671
+ "truncated": false,
2672
+ "block": 3,
2673
+ "row": 3393
2674
+ },
2675
+ {
2676
+ "path": "source/samHeaders.cpp",
2677
+ "sha256": "3bfe2cff312f8c48833e6de6de0ca6eb122e5eeea109eb1821a9837efa2e671d",
2678
+ "language": "C++",
2679
+ "lines": 108,
2680
+ "truncated": false,
2681
+ "block": 3,
2682
+ "row": 2367
2683
+ },
2684
+ {
2685
+ "path": "source/samHeaders.h",
2686
+ "sha256": "79746c42ee4d62792542e377b6f966621de949c83d276d798fb208a89e7f43e3",
2687
+ "language": "C/C++",
2688
+ "lines": 10,
2689
+ "truncated": false,
2690
+ "block": 3,
2691
+ "row": 3341
2692
+ },
2693
+ {
2694
+ "path": "source/serviceFuns.cpp",
2695
+ "sha256": "ee860d4535b8d04ef3e76e624a7d222823ac93aefede7f45e137377751ff4998",
2696
+ "language": "C++",
2697
+ "lines": 351,
2698
+ "truncated": false,
2699
+ "block": 3,
2700
+ "row": 2839
2701
+ },
2702
+ {
2703
+ "path": "source/signalFromBAM.cpp",
2704
+ "sha256": "f0608019ff9447c5f38088642e445baae0f3a7735c19722ec1db756460569861",
2705
+ "language": "C++",
2706
+ "lines": 209,
2707
+ "truncated": false,
2708
+ "block": 3,
2709
+ "row": 2913
2710
+ },
2711
+ {
2712
+ "path": "source/signalFromBAM.h",
2713
+ "sha256": "062b890748f731bb8d56cd03c0603d15f9739d97e53d64d79adc80ce3040ce16",
2714
+ "language": "C/C++",
2715
+ "lines": 13,
2716
+ "truncated": false,
2717
+ "block": 3,
2718
+ "row": 3366
2719
+ },
2720
+ {
2721
+ "path": "source/sjAlignSplit.cpp",
2722
+ "sha256": "29bb5b3df70f4a8bb9ea72834ed67f3b5284381e25082317718114eda77fc279",
2723
+ "language": "C++",
2724
+ "lines": 15,
2725
+ "truncated": false,
2726
+ "block": 3,
2727
+ "row": 839
2728
+ },
2729
+ {
2730
+ "path": "source/sjAlignSplit.h",
2731
+ "sha256": "c28341baa151881592a16efd939130d2d945550c9cb2517af95c66baecb877ac",
2732
+ "language": "C/C++",
2733
+ "lines": 9,
2734
+ "truncated": false,
2735
+ "block": 3,
2736
+ "row": 3349
2737
+ },
2738
+ {
2739
+ "path": "source/sjdbBuildIndex.cpp",
2740
+ "sha256": "1e050eba0686aa88c5ea1d992c529215a22c07eae62d8f9d184a602ea4621588",
2741
+ "language": "C++",
2742
+ "lines": 333,
2743
+ "truncated": false,
2744
+ "block": 3,
2745
+ "row": 3099
2746
+ },
2747
+ {
2748
+ "path": "source/sjdbBuildIndex.h",
2749
+ "sha256": "066d409e8341c37ce68756269ff911b4aa6c9bd15784b62c91ed0321565d0ce8",
2750
+ "language": "C/C++",
2751
+ "lines": 10,
2752
+ "truncated": false,
2753
+ "block": 3,
2754
+ "row": 3364
2755
+ },
2756
+ {
2757
+ "path": "source/sjdbInsertJunctions.cpp",
2758
+ "sha256": "2bb05df7d1665f86c7ce0667e94fdaa8910c0d806565faece0af4fe54c681e3b",
2759
+ "language": "C++",
2760
+ "lines": 102,
2761
+ "truncated": false,
2762
+ "block": 3,
2763
+ "row": 2700
2764
+ },
2765
+ {
2766
+ "path": "source/sjdbInsertJunctions.h",
2767
+ "sha256": "14cdf4d622091e1215d5a56f2568d7833fb184eaacbe74db64bea5282d250338",
2768
+ "language": "C/C++",
2769
+ "lines": 10,
2770
+ "truncated": false,
2771
+ "block": 3,
2772
+ "row": 3351
2773
+ },
2774
+ {
2775
+ "path": "source/sjdbLoadFromFiles.cpp",
2776
+ "sha256": "fbafeee5c81447b968d31caf749e14f5386365c9fd6aca5e7a3a441e7010602c",
2777
+ "language": "C++",
2778
+ "lines": 27,
2779
+ "truncated": false,
2780
+ "block": 3,
2781
+ "row": 1299
2782
+ },
2783
+ {
2784
+ "path": "source/sjdbLoadFromFiles.h",
2785
+ "sha256": "da3dc5a92bf76102cd4f8941109e50a753dd59fc8dd53ee47088d6d5b0420cca",
2786
+ "language": "C/C++",
2787
+ "lines": 10,
2788
+ "truncated": false,
2789
+ "block": 3,
2790
+ "row": 3339
2791
+ },
2792
+ {
2793
+ "path": "source/sjdbLoadFromStream.cpp",
2794
+ "sha256": "fce127fc96d34d9e2539b1e05feb85f25a14a40d54365c8f570066c40d00e983",
2795
+ "language": "C++",
2796
+ "lines": 29,
2797
+ "truncated": false,
2798
+ "block": 3,
2799
+ "row": 1099
2800
+ },
2801
+ {
2802
+ "path": "source/sjdbLoadFromStream.h",
2803
+ "sha256": "ae582d7638d1798ee746adf421d557e6c4f062ba8e4ae4abc7aae269c6e77ef0",
2804
+ "language": "C/C++",
2805
+ "lines": 8,
2806
+ "truncated": false,
2807
+ "block": 3,
2808
+ "row": 3337
2809
+ },
2810
+ {
2811
+ "path": "source/sjdbPrepare.cpp",
2812
+ "sha256": "fe8269c7c9ba47132d9d8d3076589d099b9f9d3cbc749dbf31381140bbbc7b46",
2813
+ "language": "C++",
2814
+ "lines": 225,
2815
+ "truncated": false,
2816
+ "block": 3,
2817
+ "row": 3001
2818
+ },
2819
+ {
2820
+ "path": "source/sjdbPrepare.h",
2821
+ "sha256": "d82dbc48e13349a8fa0ebd7f6b950121da8a51979866b94e665e6b189ea9c6e2",
2822
+ "language": "C/C++",
2823
+ "lines": 10,
2824
+ "truncated": false,
2825
+ "block": 3,
2826
+ "row": 3350
2827
+ },
2828
+ {
2829
+ "path": "source/soloInputFeatureUMI.cpp",
2830
+ "sha256": "0639397f292cd8e933b6f56eefbbb9dfb8cd3425f6702011cf4aa1884340700b",
2831
+ "language": "C++",
2832
+ "lines": 44,
2833
+ "truncated": false,
2834
+ "block": 3,
2835
+ "row": 1439
2836
+ },
2837
+ {
2838
+ "path": "source/soloInputFeatureUMI.h",
2839
+ "sha256": "ac7b18870b2738f50b25185864e7316038dc6ba9d880fca0f4d8f80f81914e7b",
2840
+ "language": "C/C++",
2841
+ "lines": 13,
2842
+ "truncated": false,
2843
+ "block": 3,
2844
+ "row": 3405
2845
+ },
2846
+ {
2847
+ "path": "source/sortSuffixesBucket.h",
2848
+ "sha256": "6da1efdc5aacdd913e0aba4fe990c092f5007eca8525bb52cc17c01a8a1e2b20",
2849
+ "language": "C/C++",
2850
+ "lines": 3,
2851
+ "truncated": false,
2852
+ "block": 3,
2853
+ "row": 3323
2854
+ },
2855
+ {
2856
+ "path": "source/stitchAlignToTranscript.cpp",
2857
+ "sha256": "84d31fff54c1d5a3b8eda85f0d1abdd49227536b58e371d1e8146f526913fc5d",
2858
+ "language": "C++",
2859
+ "lines": 415,
2860
+ "truncated": false,
2861
+ "block": 3,
2862
+ "row": 3198
2863
+ },
2864
+ {
2865
+ "path": "source/stitchAlignToTranscript.h",
2866
+ "sha256": "53b0b59e982b3463e7b74f4f1583b4c30daac250fc1b0fbdf6ebec75ac1a926d",
2867
+ "language": "C/C++",
2868
+ "lines": 7,
2869
+ "truncated": false,
2870
+ "block": 3,
2871
+ "row": 3372
2872
+ },
2873
+ {
2874
+ "path": "source/stitchGapIndel.cpp",
2875
+ "sha256": "cffb0ce5535117d44290b25a63aec8b650ec37f66786ddba5e229c0d088c3fba",
2876
+ "language": "C++",
2877
+ "lines": 59,
2878
+ "truncated": false,
2879
+ "block": 3,
2880
+ "row": 1766
2881
+ },
2882
+ {
2883
+ "path": "source/stitchWindowAligns.cpp",
2884
+ "sha256": "2e38ad92980341af9bcccf48fb76a3bad6f2934a550f1e453ab9760140a9482e",
2885
+ "language": "C++",
2886
+ "lines": 355,
2887
+ "truncated": false,
2888
+ "block": 3,
2889
+ "row": 3160
2890
+ },
2891
+ {
2892
+ "path": "source/stitchWindowAligns.h",
2893
+ "sha256": "f97cce62b7fb4a9e09e7521d83cbc1dc3e74e23cab24c6b251e30da5df55c54d",
2894
+ "language": "C/C++",
2895
+ "lines": 12,
2896
+ "truncated": false,
2897
+ "block": 3,
2898
+ "row": 3418
2899
+ },
2900
+ {
2901
+ "path": "source/streamFuns.cpp",
2902
+ "sha256": "3d108260710811b22433dbf1e100b7333c4d057a1ddd002ed7ec9ff1106d41bb",
2903
+ "language": "C++",
2904
+ "lines": 149,
2905
+ "truncated": false,
2906
+ "block": 3,
2907
+ "row": 2794
2908
+ },
2909
+ {
2910
+ "path": "source/streamFuns.h",
2911
+ "sha256": "05ded052748f60b0258196d48a754126919936092ea510b351b1c472954236e5",
2912
+ "language": "C/C++",
2913
+ "lines": 17,
2914
+ "truncated": false,
2915
+ "block": 3,
2916
+ "row": 3465
2917
+ },
2918
+ {
2919
+ "path": "source/stringSubstituteAll.cpp",
2920
+ "sha256": "8acefbc1f6ee5a0476d89673844918d0cc09ddc3444ae34a29834530acafff2d",
2921
+ "language": "C++",
2922
+ "lines": 10,
2923
+ "truncated": false,
2924
+ "block": 3,
2925
+ "row": 730
2926
+ },
2927
+ {
2928
+ "path": "source/stringSubstituteAll.h",
2929
+ "sha256": "13fc9fee26fa88b86648a7f68c2d50852d1815924dc5b7a50f1930568f9b9e16",
2930
+ "language": "C/C++",
2931
+ "lines": 8,
2932
+ "truncated": false,
2933
+ "block": 3,
2934
+ "row": 3335
2935
+ },
2936
+ {
2937
+ "path": "source/sysRemoveDir.cpp",
2938
+ "sha256": "7bd3dc835300bb0fd90c86fb18b784c0cfd0b58da848105ee1307bfa0503ca3b",
2939
+ "language": "C++",
2940
+ "lines": 28,
2941
+ "truncated": false,
2942
+ "block": 3,
2943
+ "row": 969
2944
+ },
2945
+ {
2946
+ "path": "source/sysRemoveDir.h",
2947
+ "sha256": "068797768ce12c98fa48bd59cd0636eafc2cf64dc84c590f2d3e708054e7c949",
2948
+ "language": "C/C++",
2949
+ "lines": 8,
2950
+ "truncated": false,
2951
+ "block": 3,
2952
+ "row": 3325
2953
+ },
2954
+ {
2955
+ "path": "source/systemFunctions.cpp",
2956
+ "sha256": "52b4d42ae489360b6648fb82e99e2ba561a38acf4ebe590af5f159c98525b3da",
2957
+ "language": "C++",
2958
+ "lines": 27,
2959
+ "truncated": false,
2960
+ "block": 3,
2961
+ "row": 889
2962
+ },
2963
+ {
2964
+ "path": "source/systemFunctions.h",
2965
+ "sha256": "8c362ee417bed051cd49903d4bb49b6e2214c98e0d068bc610b3da929949bfc5",
2966
+ "language": "C/C++",
2967
+ "lines": 6,
2968
+ "truncated": false,
2969
+ "block": 3,
2970
+ "row": 3321
2971
+ },
2972
+ {
2973
+ "path": "source/twoPassRunPass1.cpp",
2974
+ "sha256": "287b18b27ab0a593c51c1afbbc117347f136fff0ca693448c72a4490fa81e6da",
2975
+ "language": "C++",
2976
+ "lines": 97,
2977
+ "truncated": false,
2978
+ "block": 3,
2979
+ "row": 2146
2980
+ },
2981
+ {
2982
+ "path": "source/twoPassRunPass1.h",
2983
+ "sha256": "07901af998d59bca5682f65c8c6a34ab852db4ad93d7b461276702bdfac227af",
2984
+ "language": "C/C++",
2985
+ "lines": 11,
2986
+ "truncated": false,
2987
+ "block": 3,
2988
+ "row": 3360
2989
+ }
2990
+ ]
2991
+ }
manifests/10/github.com__yz-hust__echo-dfcnn.json ADDED
@@ -0,0 +1,183 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/yz-hust/echo-dfcnn",
4
+ "url": "https://github.com/yz-hust/Echo-DFCNN",
5
+ "host": "github.com",
6
+ "commit": "9fbc86d772ab3672030e5ba6aaf56535284e812c",
7
+ "license": "Apache-2.0",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "85a859e04b7706429fef3e1ca4db916a23197edb43456c937018668eb5174dd3",
14
+ "language": "License",
15
+ "lines": 176,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 8140
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "7ddf0d5859f8e08734672ed00fc5bb2dfef4405581d87e113ce2ed3012bc4fde",
23
+ "language": "Text",
24
+ "lines": 148,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2469
28
+ },
29
+ {
30
+ "path": "src/core/Attention.py",
31
+ "sha256": "fa4b5944ef0232f5de51ac5bd1c75eaa103d2dce562e7602e4da28df65c8b8c1",
32
+ "language": "Python",
33
+ "lines": 186,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 24136
37
+ },
38
+ {
39
+ "path": "src/core/MOAv3.py",
40
+ "sha256": "ec0429433cdb973e4c017cbf28ff75b26631f7e7272b9bbe5becedf0f7d506a3",
41
+ "language": "Python",
42
+ "lines": 146,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 23180
46
+ },
47
+ {
48
+ "path": "src/core/corr.py",
49
+ "sha256": "878c2f7695afe45bf3826ea9ca6880ed5788f9e7f7b384c18dcdd652060a8ba0",
50
+ "language": "Python",
51
+ "lines": 54,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 20024
55
+ },
56
+ {
57
+ "path": "src/core/extractor.py",
58
+ "sha256": "34a6946f3c9aa9109f66d6fe737a41049689328e56cc4aae57d12069367c8471",
59
+ "language": "Python",
60
+ "lines": 478,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 26545
64
+ },
65
+ {
66
+ "path": "src/core/modeling/aspp.py",
67
+ "sha256": "b0bbfea93ec84457946e2021310cb19e6297cac17c7d4448d7c64cfe8ab39bea",
68
+ "language": "Python",
69
+ "lines": 94,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 21708
73
+ },
74
+ {
75
+ "path": "src/core/modeling/attention.py",
76
+ "sha256": "c4235370076bac344cd3a41b8151890961fe2f94dc983f5d38a136bfef1c6ebf",
77
+ "language": "Python",
78
+ "lines": 88,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 21169
82
+ },
83
+ {
84
+ "path": "src/core/modeling/decoder.py",
85
+ "sha256": "d0915ae1b78d0db68f30cc3f336b24de28ff0a7a6b6bc2b111ea2a51734522ad",
86
+ "language": "Python",
87
+ "lines": 57,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 20479
91
+ },
92
+ {
93
+ "path": "src/core/modeling/deep_fr_w_2class.py",
94
+ "sha256": "b22113f5bb634b4704bebcb7364d64efb996ca891111345388fc1d0450649b7c",
95
+ "language": "Python",
96
+ "lines": 131,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 23010
100
+ },
101
+ {
102
+ "path": "src/core/modeling/sync_batchnorm/batchnorm.py",
103
+ "sha256": "21f16dcd3f9d15896f8235717e1559d9ed797cf42d3e147033a9b346a11ded48",
104
+ "language": "Python",
105
+ "lines": 269,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 26023
109
+ },
110
+ {
111
+ "path": "src/core/modeling/sync_batchnorm/comm.py",
112
+ "sha256": "08970778ddf38a65be05af6bf60f495db4721820a2c045cba61637ce81521cde",
113
+ "language": "Python",
114
+ "lines": 119,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 22342
118
+ },
119
+ {
120
+ "path": "src/core/update.py",
121
+ "sha256": "97f18289c01f990facf87c1758fe85ba37debad2dc65fe179ddfa3a04e5faf48",
122
+ "language": "Python",
123
+ "lines": 146,
124
+ "truncated": false,
125
+ "block": 3,
126
+ "row": 23349
127
+ },
128
+ {
129
+ "path": "src/core/utils/utils.py",
130
+ "sha256": "1028403eb4437871407d260a901efd884666c5d0004a4b730669a50c0ad54b79",
131
+ "language": "Python",
132
+ "lines": 82,
133
+ "truncated": false,
134
+ "block": 3,
135
+ "row": 20761
136
+ },
137
+ {
138
+ "path": "src/run_inference.py",
139
+ "sha256": "9c9dd3467d321f0bf571c878dc5636dc72edad73392c449fb20db29827d4f2e3",
140
+ "language": "Python",
141
+ "lines": 383,
142
+ "truncated": false,
143
+ "block": 3,
144
+ "row": 26422
145
+ },
146
+ {
147
+ "path": "src/run_inference_cpu.sh",
148
+ "sha256": "3176534e550ba083eb1bb8b65ab614a5a24e32ae4e5bea63f31f2f1066916c08",
149
+ "language": "Shell",
150
+ "lines": 14,
151
+ "truncated": false,
152
+ "block": 4,
153
+ "row": 1505
154
+ },
155
+ {
156
+ "path": "src/run_inference_gpu.sh",
157
+ "sha256": "030e459bd354ae49eb4bab408ebc0f61f26dfca2c1442f3df34732ccd72c3c38",
158
+ "language": "Shell",
159
+ "lines": 15,
160
+ "truncated": false,
161
+ "block": 4,
162
+ "row": 1523
163
+ },
164
+ {
165
+ "path": "src/utils/calculate_LVEF.py",
166
+ "sha256": "a9759478b655f50159baa6c86dfa1ec4eb97e3fcb9f8be7a22446e13351e7ee7",
167
+ "language": "Python",
168
+ "lines": 197,
169
+ "truncated": false,
170
+ "block": 3,
171
+ "row": 23863
172
+ },
173
+ {
174
+ "path": "src/utils/myAPI.py",
175
+ "sha256": "7b27d6c9a4b9f2203310e400bcc92ef5df257ef87f63264a7462025eb9fda68e",
176
+ "language": "Python",
177
+ "lines": 232,
178
+ "truncated": false,
179
+ "block": 3,
180
+ "row": 24244
181
+ }
182
+ ]
183
+ }
manifests/10/zenodo__19897907.json ADDED
@@ -0,0 +1,345 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "zenodo:19897907",
4
+ "url": "https://zenodo.org/records/19897907",
5
+ "host": "zenodo.org",
6
+ "commit": "",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file license.txt",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "README.md",
13
+ "sha256": "adb031a9bcc8e901a83879f96870d07250fea3f39331c26c8f7ace975f829384",
14
+ "language": "Text",
15
+ "lines": 68,
16
+ "truncated": false,
17
+ "block": 4,
18
+ "row": 2403
19
+ },
20
+ {
21
+ "path": "license.txt",
22
+ "sha256": "587d994a3609f8c68a2a3804afedde00025ad8236f173824fe2694b9213d343b",
23
+ "language": "License",
24
+ "lines": 22,
25
+ "truncated": false,
26
+ "block": 3,
27
+ "row": 8066
28
+ },
29
+ {
30
+ "path": "pipelines/templates/apply_anat2tpl.py",
31
+ "sha256": "46567c38c17e9f39e56b8f54b6f7907f7b168dba1ae89d93336a1dd9f542828f",
32
+ "language": "Python",
33
+ "lines": 37,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 18747
37
+ },
38
+ {
39
+ "path": "pipelines/templates/apply_pet2anat.py",
40
+ "sha256": "4eaee1bfc548564cdb7da53e7ffc776c5eb60472e65c4be13510aa5f0db1cdcc",
41
+ "language": "Python",
42
+ "lines": 137,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 22407
46
+ },
47
+ {
48
+ "path": "pipelines/templates/compute_metrics_anat.py",
49
+ "sha256": "b62014021f93d6563ddb3e6512f93639fa7be9fa0e734320483942bad02bb22d",
50
+ "language": "Python",
51
+ "lines": 41,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 18875
55
+ },
56
+ {
57
+ "path": "pipelines/templates/compute_metrics_tpl.py",
58
+ "sha256": "55e13801314a0f5b843f08bfc3e05ebce02ce41f2a6b831a3147e983383c2301",
59
+ "language": "Python",
60
+ "lines": 54,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 19464
64
+ },
65
+ {
66
+ "path": "pipelines/templates/estimate_pet2anat_ants.sh",
67
+ "sha256": "6678e88acbecf467eefa615d2c904aebd1a57ec22ee1f869432dc46713189995",
68
+ "language": "Shell",
69
+ "lines": 20,
70
+ "truncated": false,
71
+ "block": 4,
72
+ "row": 1610
73
+ },
74
+ {
75
+ "path": "pipelines/templates/estimate_pet2anat_spm.py",
76
+ "sha256": "da073927c437940baa2e4c97c1a0fd418f63fee099a07f33102f57b77ee15b6b",
77
+ "language": "Python",
78
+ "lines": 26,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 18427
82
+ },
83
+ {
84
+ "path": "pipelines/templates/petconvert.py",
85
+ "sha256": "9cae04072b964805b6ee9ccbc99ff9a5ab0763f18d68ccc21c12e40f7ac3d5fc",
86
+ "language": "Python",
87
+ "lines": 33,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 18921
91
+ },
92
+ {
93
+ "path": "pipelines/templates/pickatlas.py",
94
+ "sha256": "69a0ae5a1cb661c861fc146517a2a71528883c8b7d3e46fb4450a1b25f809a2e",
95
+ "language": "Python",
96
+ "lines": 14,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 17789
100
+ },
101
+ {
102
+ "path": "pipelines/templates/qa_mosaics_T1w.py",
103
+ "sha256": "7c7a7fcb7d30f3741ccb24ce10473a55934c71543570837fddebce7fe40e16a1",
104
+ "language": "Python",
105
+ "lines": 82,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 20327
109
+ },
110
+ {
111
+ "path": "pipelines/templates/qa_mosaics_suit.py",
112
+ "sha256": "81eedce724f0a190cc0745f11193a73ce681ab516c76173ce0e6bf02fc673425",
113
+ "language": "Python",
114
+ "lines": 46,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 19054
118
+ },
119
+ {
120
+ "path": "pipelines/templates/qa_mosaics_tpl.py",
121
+ "sha256": "70bdb4a8d7a56841f37d2c6dd4edab4c12a51e6d695f12c27102de119ac25726",
122
+ "language": "Python",
123
+ "lines": 62,
124
+ "truncated": false,
125
+ "block": 3,
126
+ "row": 19684
127
+ },
128
+ {
129
+ "path": "pipelines/templates/realign.py",
130
+ "sha256": "12b9264e05610c58089e4cd920dccdc27641c537e1c9bb11a76b5b342fdc0fe6",
131
+ "language": "Python",
132
+ "lines": 23,
133
+ "truncated": false,
134
+ "block": 3,
135
+ "row": 17905
136
+ },
137
+ {
138
+ "path": "pipelines/templates/reorient_anat.py",
139
+ "sha256": "4c000bd13e3408a405d3afce0f75b0454bed0637ce260490c3b940309a7393bf",
140
+ "language": "Python",
141
+ "lines": 39,
142
+ "truncated": false,
143
+ "block": 3,
144
+ "row": 18856
145
+ },
146
+ {
147
+ "path": "pipelines/templates/reorient_pet.py",
148
+ "sha256": "72df66c996cd559fa6a67b909de787123fea2f816173d2e3f9cb0a9cc9dc0f68",
149
+ "language": "Python",
150
+ "lines": 31,
151
+ "truncated": false,
152
+ "block": 3,
153
+ "row": 18570
154
+ },
155
+ {
156
+ "path": "pipelines/templates/segmentation.py",
157
+ "sha256": "86ab4def8348054ceea6d2558b239417c64bd97e910c3285f8a512cb9fd67263",
158
+ "language": "Python",
159
+ "lines": 89,
160
+ "truncated": false,
161
+ "block": 3,
162
+ "row": 20436
163
+ },
164
+ {
165
+ "path": "pipelines/templates/suvr_baker.py",
166
+ "sha256": "bd5fa97410be8efdb60804dda04646ff9487e543c5efb23f0fa16c3d0a739445",
167
+ "language": "Python",
168
+ "lines": 64,
169
+ "truncated": false,
170
+ "block": 3,
171
+ "row": 19859
172
+ },
173
+ {
174
+ "path": "setup.py",
175
+ "sha256": "8e0608476fe50b0d7367c32c429f7594aa05f7c76d1f5799842b975bce44042c",
176
+ "language": "Python",
177
+ "lines": 41,
178
+ "truncated": false,
179
+ "block": 3,
180
+ "row": 19097
181
+ },
182
+ {
183
+ "path": "templates/apply_anat2tpl.m",
184
+ "sha256": "55648a10b612ff04968911e664828d8151c4ae3e04d5382e599b06be863c6450",
185
+ "language": "MATLAB",
186
+ "lines": 40,
187
+ "truncated": false,
188
+ "block": 3,
189
+ "row": 12249
190
+ },
191
+ {
192
+ "path": "templates/beluga.sh",
193
+ "sha256": "cff4a14c102d661f8d7d5212f2eafe3e113728aae84cad646566b5d7261392fb",
194
+ "language": "Shell",
195
+ "lines": 67,
196
+ "truncated": false,
197
+ "block": 4,
198
+ "row": 1836
199
+ },
200
+ {
201
+ "path": "templates/estimate_pet2anat.m",
202
+ "sha256": "970ea71da7abcc76cc6b56cddce041dea153583de364a88f1a354ddca53dd7ab",
203
+ "language": "MATLAB",
204
+ "lines": 45,
205
+ "truncated": false,
206
+ "block": 3,
207
+ "row": 11873
208
+ },
209
+ {
210
+ "path": "templates/guillimin.sh",
211
+ "sha256": "01a8438b3c06bdd9bb78e9483d3d959f5d75ca6f4d3ccc97a039cad4d495e1fa",
212
+ "language": "Shell",
213
+ "lines": 67,
214
+ "truncated": false,
215
+ "block": 4,
216
+ "row": 1849
217
+ },
218
+ {
219
+ "path": "templates/qa_dataSubjects.js",
220
+ "sha256": "8e7cb928cee9fcb0edc305ef172a572ffe1f6a5896321357d57c0a06a9ea09d4",
221
+ "language": "JavaScript",
222
+ "lines": 14,
223
+ "truncated": false,
224
+ "block": 3,
225
+ "row": 6734
226
+ },
227
+ {
228
+ "path": "templates/realign.m",
229
+ "sha256": "626a632552318d0cd52080f4aeb1eb09910e511285647705c3f72f164177b409",
230
+ "language": "MATLAB",
231
+ "lines": 43,
232
+ "truncated": false,
233
+ "block": 3,
234
+ "row": 12107
235
+ },
236
+ {
237
+ "path": "templates/seg_spm12.m",
238
+ "sha256": "3c9d7e4905081c0f96477eec96187eafbb8c92311f4809dbd27065e8863566f5",
239
+ "language": "MATLAB",
240
+ "lines": 59,
241
+ "truncated": false,
242
+ "block": 3,
243
+ "row": 13564
244
+ },
245
+ {
246
+ "path": "templates/seg_suit.m",
247
+ "sha256": "27be9c2694866dcbafb92360e4329462418d760d6bd892b2976eb65a16fb7b7e",
248
+ "language": "MATLAB",
249
+ "lines": 70,
250
+ "truncated": false,
251
+ "block": 3,
252
+ "row": 14022
253
+ },
254
+ {
255
+ "path": "templates/set_origin_to_centerOfMass_anat.m",
256
+ "sha256": "ccd696f81f345f5440b7c6dee051d41cea88664e91b56dfabaa39f87bb444a14",
257
+ "language": "MATLAB",
258
+ "lines": 57,
259
+ "truncated": false,
260
+ "block": 3,
261
+ "row": 11946
262
+ },
263
+ {
264
+ "path": "templates/set_origin_to_centerOfMass_pet.m",
265
+ "sha256": "af91e0844c6ab540cce7c3ed730d084bcc377e64e2696abcba255fcea8a0131e",
266
+ "language": "MATLAB",
267
+ "lines": 57,
268
+ "truncated": false,
269
+ "block": 3,
270
+ "row": 11995
271
+ },
272
+ {
273
+ "path": "templates/suvr_baker.m",
274
+ "sha256": "e01cb257f4e87b9ac400c189e441e9101d8b27307744a70f0e03e21f27ca4669",
275
+ "language": "MATLAB",
276
+ "lines": 30,
277
+ "truncated": false,
278
+ "block": 3,
279
+ "row": 10421
280
+ },
281
+ {
282
+ "path": "vlpp/__init__.py",
283
+ "sha256": "8b084a9f378124b2b1a51563bf3c22444eb7ff33692017da28b2136ae56987ed",
284
+ "language": "Python",
285
+ "lines": 1,
286
+ "truncated": false,
287
+ "block": 3,
288
+ "row": 17361
289
+ },
290
+ {
291
+ "path": "vlpp/dashboards.py",
292
+ "sha256": "2bd4626164a9f2399d06203d85c7876c0c61eafcc4bf3f8b93afe22684c7fcb9",
293
+ "language": "Python",
294
+ "lines": 144,
295
+ "truncated": false,
296
+ "block": 3,
297
+ "row": 22647
298
+ },
299
+ {
300
+ "path": "vlpp/operation.py",
301
+ "sha256": "df4beacddfa3b47bf3fd32037f930d18a62254f77fe03cb2f36c202cf62316d1",
302
+ "language": "Python",
303
+ "lines": 198,
304
+ "truncated": false,
305
+ "block": 3,
306
+ "row": 23691
307
+ },
308
+ {
309
+ "path": "vlpp/qamosaic.py",
310
+ "sha256": "ff44060fbcfc1fa38855e23550f899e7f3f4b888f661effdd92f1b2742694f17",
311
+ "language": "Python",
312
+ "lines": 262,
313
+ "truncated": false,
314
+ "block": 3,
315
+ "row": 24273
316
+ },
317
+ {
318
+ "path": "vlpp/realign.py",
319
+ "sha256": "4ce4c5d087a60db2ad9722514dba5f0edb82f6370e00ffbf9095db53099b8b5e",
320
+ "language": "Python",
321
+ "lines": 169,
322
+ "truncated": false,
323
+ "block": 3,
324
+ "row": 22938
325
+ },
326
+ {
327
+ "path": "vlpp/registration.py",
328
+ "sha256": "0573efa2caea1a24fd584a9368fb9f480734e84eef5e60e7c059a45fbe77bdeb",
329
+ "language": "Python",
330
+ "lines": 81,
331
+ "truncated": false,
332
+ "block": 3,
333
+ "row": 20480
334
+ },
335
+ {
336
+ "path": "vlpp/utils.py",
337
+ "sha256": "7cbc505db554fbf9c710752f794789de078c7faa44d73966bfdb17f14efbf2ee",
338
+ "language": "Python",
339
+ "lines": 114,
340
+ "truncated": false,
341
+ "block": 3,
342
+ "row": 20764
343
+ }
344
+ ]
345
+ }
manifests/11/github.com__kavrakilab__stag_public.json ADDED
@@ -0,0 +1,156 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/kavrakilab/stag_public",
4
+ "url": "https://github.com/KavrakiLab/STAG_public",
5
+ "host": "github.com",
6
+ "commit": "06c30a570e21a107eb10292438adbc5499209426",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file LICENSE.txt",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE.txt",
13
+ "sha256": "9a8e13ac07ef40c3e78ef8ad6015e0720d6764f3a3c54ace2b61783280f0c824",
14
+ "language": "License",
15
+ "lines": 21,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 7980
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "588e8da899f6d8ccb0dd6ca99f0a67214f4d4f6cb399bd7b699d068d35c46c21",
23
+ "language": "Text",
24
+ "lines": 85,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2501
28
+ },
29
+ {
30
+ "path": "evaluations.py",
31
+ "sha256": "7de2d3331d0a5ff3febd8203c7d1c15ba8e112d3f289e96bf0e1b02fce764af7",
32
+ "language": "Python",
33
+ "lines": 26,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 19801
37
+ },
38
+ {
39
+ "path": "interpretability.py",
40
+ "sha256": "f8e10940138d40fee5c7738e84f6e63d5ba09b62ebf17003653223a4a20eac0a",
41
+ "language": "Python",
42
+ "lines": 132,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 23776
46
+ },
47
+ {
48
+ "path": "models/CNN_3D/cross_validation.py",
49
+ "sha256": "6542a5de7466fb02d27dea07a14d1f0b0c7c5ffadfddc8bd9dab565a8f13ca3c",
50
+ "language": "Python",
51
+ "lines": 103,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 21984
55
+ },
56
+ {
57
+ "path": "models/CNN_3D/encode_structure.py",
58
+ "sha256": "bc82f4f3c06ca9f2700b74525af2be8c111ac73b69ec1ac0c58445ae108005b9",
59
+ "language": "Python",
60
+ "lines": 72,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 21185
64
+ },
65
+ {
66
+ "path": "models/CNN_3D/model.py",
67
+ "sha256": "671fc80cebe807eebdf2ef105879457881c69cae0ce5cfd01df37a5bd781037f",
68
+ "language": "Python",
69
+ "lines": 59,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 20270
73
+ },
74
+ {
75
+ "path": "models/CNN_3D/utils.py",
76
+ "sha256": "45960a24dfe84c20b9f7088652a34a69e5f5caaf37a18ca665c9fe8d09f9cded",
77
+ "language": "Python",
78
+ "lines": 4,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 18393
82
+ },
83
+ {
84
+ "path": "models/Contacts/cross_validation.py",
85
+ "sha256": "709c619e15ab154f4504e490a0c860d291ca38ed7719583faa0d56812a054b1f",
86
+ "language": "Python",
87
+ "lines": 65,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 20475
91
+ },
92
+ {
93
+ "path": "models/Contacts/encode_structure.py",
94
+ "sha256": "ee37ac711e285ec8aac7d5c88e6471ea20369d7f353a17fbd19a40e0ebcf4322",
95
+ "language": "Python",
96
+ "lines": 31,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 19070
100
+ },
101
+ {
102
+ "path": "models/Contacts/model.py",
103
+ "sha256": "86bcb3bf8288de777ac47c75cf81b206872e2cbdad147a5358923809927f18cc",
104
+ "language": "Python",
105
+ "lines": 37,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 18944
109
+ },
110
+ {
111
+ "path": "models/Contacts/utils.py",
112
+ "sha256": "d2c308a724ec7157b8aa9d7596e85b85b5ac2f86dc62837f9ddecf985b0bace3",
113
+ "language": "Python",
114
+ "lines": 3,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 18241
118
+ },
119
+ {
120
+ "path": "models/STAG/cross_validation.py",
121
+ "sha256": "02ae327e89410c23e5d2149d15792bee4a889be1c2c7d0c2e7f14abd17ba3e90",
122
+ "language": "Python",
123
+ "lines": 146,
124
+ "truncated": false,
125
+ "block": 3,
126
+ "row": 23376
127
+ },
128
+ {
129
+ "path": "models/STAG/encode_structure.py",
130
+ "sha256": "f4f828261fe4b7072339a113d4fcd50aee829e9aba546d3744369e45bd35cc5d",
131
+ "language": "Python",
132
+ "lines": 112,
133
+ "truncated": false,
134
+ "block": 3,
135
+ "row": 22798
136
+ },
137
+ {
138
+ "path": "models/STAG/model.py",
139
+ "sha256": "18f89123dda81423a281850dd487a934066a20aaf46b69a39bc6c9a738da670a",
140
+ "language": "Python",
141
+ "lines": 204,
142
+ "truncated": false,
143
+ "block": 3,
144
+ "row": 24516
145
+ },
146
+ {
147
+ "path": "models/STAG/utils.py",
148
+ "sha256": "172d77f55d805a704af558bb7f38205f728728d2e5a4c91e1472c4f3128815ad",
149
+ "language": "Python",
150
+ "lines": 11,
151
+ "truncated": false,
152
+ "block": 3,
153
+ "row": 23291
154
+ }
155
+ ]
156
+ }
manifests/11/github.com__sun-hongyu__qno.json ADDED
@@ -0,0 +1,75 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/sun-hongyu/qno",
4
+ "url": "https://github.com/sun-hongyu/QNO",
5
+ "host": "github.com",
6
+ "commit": "d36f41bc7a3b03c893146ffa48bbe61dd16487fc",
7
+ "license": "Apache-2.0",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "610a07a15c8ba36b52df02f5d15083c0d3ed2bf859216076a476b9a15d8cdffb",
14
+ "language": "License",
15
+ "lines": 102,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 8136
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "5e7f865aa19bc46d3d14362325bc3eaac25ca9dd7a9356cb9d70ee11783962de",
23
+ "language": "Text",
24
+ "lines": 99,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2539
28
+ },
29
+ {
30
+ "path": "evaluation.py",
31
+ "sha256": "b3846507da2e620f8e17014a1c042b3092e3d93b71bb7ab5c8a5630d314d7f40",
32
+ "language": "Python",
33
+ "lines": 281,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 24978
37
+ },
38
+ {
39
+ "path": "model.py",
40
+ "sha256": "6bc69cb0eff0c490b27afb8f0a73c4769f52c8999b3c906b013fc6b1a1524a0f",
41
+ "language": "Python",
42
+ "lines": 300,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 25095
46
+ },
47
+ {
48
+ "path": "model_eval.py",
49
+ "sha256": "b73f25cab6467b369e69a71c164f02095e5cfe0a2a6e8bb38fb0cc3fc9788391",
50
+ "language": "Python",
51
+ "lines": 151,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 22890
55
+ },
56
+ {
57
+ "path": "train.py",
58
+ "sha256": "21ea48e33f2b4d953bd73130d82fceaf4d847ccfa5cd8d6c7420ecc5ef88fd93",
59
+ "language": "Python",
60
+ "lines": 133,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 21930
64
+ },
65
+ {
66
+ "path": "utils.py",
67
+ "sha256": "4c4914be86fa0bf29f8cbe0a8451ae2c7b5bdfe35360642a21e7cffd9dde899d",
68
+ "language": "Python",
69
+ "lines": 93,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 21243
73
+ }
74
+ ]
75
+ }
manifests/11/zenodo__14029241.json ADDED
@@ -0,0 +1,30 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "zenodo:14029241",
4
+ "url": "10.5281/zenodo.14029241",
5
+ "host": "zenodo.org",
6
+ "commit": "",
7
+ "license": "CC-BY-4.0",
8
+ "license_confirmed_by": "license of the archive's record",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "Code.zip/FC_analysis.m",
13
+ "sha256": "3e42d6ebacc665967dfecc1624d608c8413cc642b9e933c2720bbacce544c91f",
14
+ "language": "MATLAB",
15
+ "lines": 304,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 16703
19
+ },
20
+ {
21
+ "path": "Code.zip/integration_analysis_v2.m",
22
+ "sha256": "a6eb8a8fcdfc7c7c91597a2fd88e7eefaa04c0cbd033ab22ce1058711e640f67",
23
+ "language": "MATLAB",
24
+ "lines": 774,
25
+ "truncated": false,
26
+ "block": 3,
27
+ "row": 16938
28
+ }
29
+ ]
30
+ }
manifests/12/github.com__abisee__cnn-dailymail.json ADDED
@@ -0,0 +1,39 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/abisee/cnn-dailymail",
4
+ "url": "https://github.com/abisee/cnn-dailymail",
5
+ "host": "github.com",
6
+ "commit": "b15ad0a2db0d407a84b8ca9b5731e1f1c4bd24b9",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file LICENSE.md",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE.md",
13
+ "sha256": "dda30269fe36e7213627d055d4a13143bd8e03d6988830d8b72e399d987e3d24",
14
+ "language": "License",
15
+ "lines": 21,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 7930
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "699c565eb9b17823578f26af454956558bb6a82f869e68381cb8d6410793c0b6",
23
+ "language": "Text",
24
+ "lines": 44,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2484
28
+ },
29
+ {
30
+ "path": "make_datafiles.py",
31
+ "sha256": "f87139d3f06fb80aaa7ab685251ef9a1c238ed290844fa50be0d9fdc8fee2587",
32
+ "language": "Python",
33
+ "lines": 244,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 25353
37
+ }
38
+ ]
39
+ }
manifests/12/github.com__bencefogel__currentscapes-simple-model-examples.json ADDED
@@ -0,0 +1,345 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/bencefogel/currentscapes-simple-model-examples",
4
+ "url": "https://github.com/bencefogel/currentscapes-simple-model-examples",
5
+ "host": "github.com",
6
+ "commit": "926d5555bc5f575005fd1c12e90663a93591f8e0",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "CurrentscapePipeline.py",
13
+ "sha256": "94ed027b88878d0c27d1c5c65338fdd34b82a548e2ec4ebd7dc008e21637687c",
14
+ "language": "Python",
15
+ "lines": 211,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 25020
19
+ },
20
+ {
21
+ "path": "LICENSE",
22
+ "sha256": "8d972e15d4fe45b7e07c0caa46aa0580bd058f0683bc6eae60e4192165333a6a",
23
+ "language": "License",
24
+ "lines": 21,
25
+ "truncated": false,
26
+ "block": 3,
27
+ "row": 7964
28
+ },
29
+ {
30
+ "path": "README.md",
31
+ "sha256": "e22848a9ac823e671234a82ab618dbb463465308db9c45bb0a45ba5a44a20d5c",
32
+ "language": "Text",
33
+ "lines": 141,
34
+ "truncated": false,
35
+ "block": 4,
36
+ "row": 2511
37
+ },
38
+ {
39
+ "path": "currentscape_calculator/CurrentscapeCalculator.py",
40
+ "sha256": "0fd0bf2251ebf3fcc302fed8fae3a357fd9e22e0e4c5fa822e39bbf07ede5457",
41
+ "language": "Python",
42
+ "lines": 68,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 21704
46
+ },
47
+ {
48
+ "path": "currentscape_calculator/partitioning_algorithm.py",
49
+ "sha256": "8e5a0127cc072cf69309dbafafa56a84923cf5449bb14c33b7bbe739950de03e",
50
+ "language": "Python",
51
+ "lines": 350,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 26786
55
+ },
56
+ {
57
+ "path": "currentscape_calculator/partitioning_order.py",
58
+ "sha256": "50b3680efe600bf2421f54a13f284c0a7543fc186f450b4291474e965d7c2e8c",
59
+ "language": "Python",
60
+ "lines": 102,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 22483
64
+ },
65
+ {
66
+ "path": "currentscape_visualization/currentscape.py",
67
+ "sha256": "4104b1438e2f262483f5a3700ce000e71f838d72bbc1f2c6d360fe7fe1dacd25",
68
+ "language": "Python",
69
+ "lines": 76,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 20811
73
+ },
74
+ {
75
+ "path": "currentscape_visualization/utils.py",
76
+ "sha256": "718eac8745675fbbee82c552560230de946e87e82253247f091c2fcbb89c7813",
77
+ "language": "Python",
78
+ "lines": 191,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 24047
82
+ },
83
+ {
84
+ "path": "preprocessor/AxialCurrentPreprocessor.py",
85
+ "sha256": "19a0b12a0a8d64425d2cd072f8076a513f4b3bee8ad88e17cc761601efba51eb",
86
+ "language": "Python",
87
+ "lines": 151,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 23968
91
+ },
92
+ {
93
+ "path": "preprocessor/MembraneCurrentPreprocessor.py",
94
+ "sha256": "2d11706efd063367cb602599873336bef07260ad8fad8ae58da53b54889dc2c4",
95
+ "language": "Python",
96
+ "lines": 129,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 23366
100
+ },
101
+ {
102
+ "path": "preprocessor/Preprocessor.py",
103
+ "sha256": "c480a70ffb70ced3a9623e5728b33f76f7e2c41869342f57933ca450f5b511e8",
104
+ "language": "Python",
105
+ "lines": 48,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 20485
109
+ },
110
+ {
111
+ "path": "preprocessor/utils/preprocess_axial.py",
112
+ "sha256": "b271e7eb0f4db0f750828e97ca10998e559d20242d5a947307933c2f76a05ac1",
113
+ "language": "Python",
114
+ "lines": 114,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 23261
118
+ },
119
+ {
120
+ "path": "preprocessor/utils/preprocess_intrinsic.py",
121
+ "sha256": "8578d1510e57d03a30e202920498cabfcc24fd0203413afcaa24145988e53cf1",
122
+ "language": "Python",
123
+ "lines": 38,
124
+ "truncated": false,
125
+ "block": 3,
126
+ "row": 19352
127
+ },
128
+ {
129
+ "path": "preprocessor/utils/preprocess_synaptic.py",
130
+ "sha256": "ae5879670d7fdaf003673f36091be39185caffc94f87fe6f70f2fb48221ed71c",
131
+ "language": "Python",
132
+ "lines": 16,
133
+ "truncated": false,
134
+ "block": 3,
135
+ "row": 18385
136
+ },
137
+ {
138
+ "path": "simple_model_double_excitation.ipynb",
139
+ "sha256": "b66fe1d198aa04d3d88a73b7c997ad21fd61705a642ec7c5ad708bcadcf24ddb",
140
+ "language": "Jupyter",
141
+ "lines": 435,
142
+ "truncated": false,
143
+ "block": 3,
144
+ "row": 7648
145
+ },
146
+ {
147
+ "path": "simple_model_experiment.ipynb",
148
+ "sha256": "07686f6798b3685e870cc3ce57dbea173f6a7ca95d482749253b247abe37272c",
149
+ "language": "Jupyter",
150
+ "lines": 407,
151
+ "truncated": false,
152
+ "block": 3,
153
+ "row": 7630
154
+ },
155
+ {
156
+ "path": "simple_model_offpath_inhibition.ipynb",
157
+ "sha256": "fdebbc5084e0946d319b2defeaa74697e255cacfbe8451facf8f8f6958348a71",
158
+ "language": "Jupyter",
159
+ "lines": 426,
160
+ "truncated": false,
161
+ "block": 3,
162
+ "row": 7647
163
+ },
164
+ {
165
+ "path": "simulator/ModelSimulator.py",
166
+ "sha256": "710b6e53f0098689b7f78a52865bc2ad50925ba30e7830040fa8722bea930749",
167
+ "language": "Python",
168
+ "lines": 192,
169
+ "truncated": false,
170
+ "block": 3,
171
+ "row": 24142
172
+ },
173
+ {
174
+ "path": "simulator/model/CA1.hoc",
175
+ "sha256": "ac9c6de1b9b039b7e2f11d0745e3a9b7839b7de1e069f520ee6b3503cdc27455",
176
+ "language": "NEURON",
177
+ "lines": 1,
178
+ "truncated": true,
179
+ "block": 3,
180
+ "row": 17311
181
+ },
182
+ {
183
+ "path": "simulator/model/ca1_functions.py",
184
+ "sha256": "aded5b0e322e0bdf75d1d9d916429b640e4d75a649a0d519d83a7936d442916f",
185
+ "language": "Python",
186
+ "lines": 335,
187
+ "truncated": false,
188
+ "block": 3,
189
+ "row": 25839
190
+ },
191
+ {
192
+ "path": "simulator/model/ca1_model.py",
193
+ "sha256": "fd86aa12177520add66991614708eb0fff6b9965ea32406abf7c6134e48d3e75",
194
+ "language": "Python",
195
+ "lines": 124,
196
+ "truncated": false,
197
+ "block": 3,
198
+ "row": 22949
199
+ },
200
+ {
201
+ "path": "simulator/model/density_mechs/car_new.mod",
202
+ "sha256": "c27c08f7fe83eec87cacfe92ac83c4cbbbabaf242fa52a42a02e477a4a14d56f",
203
+ "language": "NEURON",
204
+ "lines": 60,
205
+ "truncated": false,
206
+ "block": 3,
207
+ "row": 17299
208
+ },
209
+ {
210
+ "path": "simulator/model/density_mechs/exp2synNMDA.mod",
211
+ "sha256": "a49339a327a93d639e4d829aff7d708c39ebbdd92d21de55bd6e696e77557dcc",
212
+ "language": "NEURON",
213
+ "lines": 138,
214
+ "truncated": false,
215
+ "block": 3,
216
+ "row": 17307
217
+ },
218
+ {
219
+ "path": "simulator/model/density_mechs/kad.mod",
220
+ "sha256": "c2bb42d8fe94df4c9f35b5b88cc98ae15301d9c14ab450f91db77481ecb26310",
221
+ "language": "NEURON",
222
+ "lines": 126,
223
+ "truncated": false,
224
+ "block": 3,
225
+ "row": 17305
226
+ },
227
+ {
228
+ "path": "simulator/model/density_mechs/kap.mod",
229
+ "sha256": "7cadba5bcb0b1931bc6f715720193e2252d79353d3c9d439183a568fb9c697fc",
230
+ "language": "NEURON",
231
+ "lines": 120,
232
+ "truncated": false,
233
+ "block": 3,
234
+ "row": 17306
235
+ },
236
+ {
237
+ "path": "simulator/model/density_mechs/kdr.mod",
238
+ "sha256": "cce576b4178741108ffc7b395efc923a61dba51e6cce95d1126f0b74f64c1bdd",
239
+ "language": "NEURON",
240
+ "lines": 102,
241
+ "truncated": false,
242
+ "block": 3,
243
+ "row": 17301
244
+ },
245
+ {
246
+ "path": "simulator/model/density_mechs/kslow_new.mod",
247
+ "sha256": "44030e595eb1b66ef8a0906001ace8560f8e6f00cf5ac0c86984ed76de59948e",
248
+ "language": "NEURON",
249
+ "lines": 52,
250
+ "truncated": false,
251
+ "block": 3,
252
+ "row": 17298
253
+ },
254
+ {
255
+ "path": "simulator/model/density_mechs/nadend.mod",
256
+ "sha256": "0a60ff300bbff986068cd7a4619f31df6dad039c396726010a15c948aeb61635",
257
+ "language": "NEURON",
258
+ "lines": 125,
259
+ "truncated": false,
260
+ "block": 3,
261
+ "row": 17302
262
+ },
263
+ {
264
+ "path": "simulator/model/density_mechs/nax.mod",
265
+ "sha256": "99a375e0c3a908d73216bbfcf923576094c693afa3c4273fd3fe7a2f95d1d0e2",
266
+ "language": "NEURON",
267
+ "lines": 124,
268
+ "truncated": false,
269
+ "block": 3,
270
+ "row": 17303
271
+ },
272
+ {
273
+ "path": "simulator/model/saveClass.py",
274
+ "sha256": "2f900bb3de0211c717e6dbbdafd1fe7709849e41157280aea4406ca360258a2e",
275
+ "language": "Python",
276
+ "lines": 1,
277
+ "truncated": false,
278
+ "block": 3,
279
+ "row": 17378
280
+ },
281
+ {
282
+ "path": "simulator/model/sim_functions.py",
283
+ "sha256": "6a17c8fb47dbc923d4c14c113cc66193279dd168edeacbfed2225fc47c934a47",
284
+ "language": "Python",
285
+ "lines": 42,
286
+ "truncated": false,
287
+ "block": 3,
288
+ "row": 19412
289
+ },
290
+ {
291
+ "path": "simulator/model/simulation.py",
292
+ "sha256": "0538c55238b0b759728875856ccc157e538252c98d68361ac18825bfccbaf19f",
293
+ "language": "Python",
294
+ "lines": 39,
295
+ "truncated": false,
296
+ "block": 3,
297
+ "row": 19802
298
+ },
299
+ {
300
+ "path": "simulator/model/utils/extract_areas.py",
301
+ "sha256": "f1cfb71e078312839bce6581644c2b32a5c1ef38d5ab299a041042d11c6e2f4a",
302
+ "language": "Python",
303
+ "lines": 13,
304
+ "truncated": false,
305
+ "block": 3,
306
+ "row": 17855
307
+ },
308
+ {
309
+ "path": "simulator/model/utils/extract_connections.py",
310
+ "sha256": "6f1dba2b771a5e1814e06305dc27439248cbd88f7ebbeb28494e9a6e8540c717",
311
+ "language": "Python",
312
+ "lines": 87,
313
+ "truncated": false,
314
+ "block": 3,
315
+ "row": 21564
316
+ },
317
+ {
318
+ "path": "simulator/model/utils/record_intrinsic.py",
319
+ "sha256": "dfa7a07afda12c5aa896b1b0b538b2f79709dca5d8b2a3b9db279723bae69a17",
320
+ "language": "Python",
321
+ "lines": 99,
322
+ "truncated": false,
323
+ "block": 3,
324
+ "row": 22118
325
+ },
326
+ {
327
+ "path": "simulator/model/utils/record_membrane_potential.py",
328
+ "sha256": "9c99ed0e17e1f7b010a57100c249142cc2a702405dc47399d0982f3364f11a8a",
329
+ "language": "Python",
330
+ "lines": 50,
331
+ "truncated": false,
332
+ "block": 3,
333
+ "row": 20088
334
+ },
335
+ {
336
+ "path": "simulator/model/utils/record_synaptic.py",
337
+ "sha256": "97da3d254e383a463bace74fdd49b82fde29a04674de3d80522ee9287f6a1a49",
338
+ "language": "Python",
339
+ "lines": 125,
340
+ "truncated": false,
341
+ "block": 3,
342
+ "row": 22316
343
+ }
344
+ ]
345
+ }
manifests/12/github.com__kelschlab__nosemaze-stablerichclubs.json ADDED
@@ -0,0 +1,390 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/kelschlab/nosemaze-stablerichclubs",
4
+ "url": "https://github.com/KelschLAB/NoSeMaze-stableRichClubs",
5
+ "host": "github.com",
6
+ "commit": "8b67fdb2489f61712a4d8d3daefc232a053494f0",
7
+ "license": "CC-BY-NC-ND-4.0",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "with_conditions",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "708743b59cbd0dbcead0f0387620c26fa9d8383fd38e2edf2896a58bb45c326e",
14
+ "language": "License",
15
+ "lines": 26,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 8097
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "ea2d18046f052a5a0c0bda1a13f542d91c4117c9955c5b5b36a2d99c1b6ddd05",
23
+ "language": "Text",
24
+ "lines": 33,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2473
28
+ },
29
+ {
30
+ "path": "scripts/age_influence.py",
31
+ "sha256": "ca40f6223e3edfdca9fb477e4537ca7fc1a8b4c3b7d2d706105e73fe768c5f13",
32
+ "language": "Python",
33
+ "lines": 301,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 26147
37
+ },
38
+ {
39
+ "path": "scripts/approach_threshold_characterization.py",
40
+ "sha256": "dc428568253f78acb73ef4461cd0088d41af3ccd4b375af1ab9dc3b82d7f1858",
41
+ "language": "Python",
42
+ "lines": 377,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 26912
46
+ },
47
+ {
48
+ "path": "scripts/approaches_boxplots.py",
49
+ "sha256": "8609b32199e64e5d0fcd151d3b2a0612c00ffba67f92c74869ca0a1349cad0f6",
50
+ "language": "Python",
51
+ "lines": 147,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 23552
55
+ },
56
+ {
57
+ "path": "scripts/approaches_visualization.py",
58
+ "sha256": "f683595891a1f2afdfd8e4e66f9a4045465734a36aaa3c9d22f148de1e76f371",
59
+ "language": "Python",
60
+ "lines": 345,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 26630
64
+ },
65
+ {
66
+ "path": "scripts/boxplots_control_cohorts.py",
67
+ "sha256": "a8be65016a41d40ba917d2946b7bfa2a4e4626efb6b532e4a245ae107665f65d",
68
+ "language": "Python",
69
+ "lines": 213,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 24518
73
+ },
74
+ {
75
+ "path": "scripts/chasing_asymmtry.py",
76
+ "sha256": "e54021ca1abd94d2decd5246e9b7d514fe507111eea926f5d0aaf7c88d7a6550",
77
+ "language": "Python",
78
+ "lines": 826,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 27936
82
+ },
83
+ {
84
+ "path": "scripts/correlations.py",
85
+ "sha256": "a94eae5c7833d23da6858b48bbea45dfafe96a34da75a009efb3d040e5fa0e65",
86
+ "language": "Python",
87
+ "lines": 601,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 27676
91
+ },
92
+ {
93
+ "path": "scripts/directed_temporal_graph_metrics.py",
94
+ "sha256": "42c1df0f339023c7e39dae74a54bba94e031593c29ba6fcbbdfb87b4f4696bfe",
95
+ "language": "Python",
96
+ "lines": 576,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 27554
100
+ },
101
+ {
102
+ "path": "scripts/graph_measure_as_timeseries.py",
103
+ "sha256": "6bcc2f3b21bf729c1f4b77dce392112a346a0406fe10a53f448802801ffd880f",
104
+ "language": "Python",
105
+ "lines": 474,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 27375
109
+ },
110
+ {
111
+ "path": "scripts/graph_metrics.py",
112
+ "sha256": "f84c321cad42794ac160e1e05c3641e86a155c29f7da8e8b8424ef651aa7a2cc",
113
+ "language": "Python",
114
+ "lines": 1112,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 28036
118
+ },
119
+ {
120
+ "path": "scripts/histograms.py",
121
+ "sha256": "48c2ec288b47ed401133be3f70a891d1c4b96a05a8d445b5f01b8ec71d3c1976",
122
+ "language": "Python",
123
+ "lines": 1499,
124
+ "truncated": false,
125
+ "block": 4,
126
+ "row": 55
127
+ },
128
+ {
129
+ "path": "scripts/interactions_boxplots.py",
130
+ "sha256": "269ae20bdd0f0246ada0bd8a60a172db5844456df62ba44907c676fc3f89c57f",
131
+ "language": "Python",
132
+ "lines": 553,
133
+ "truncated": false,
134
+ "block": 3,
135
+ "row": 27357
136
+ },
137
+ {
138
+ "path": "scripts/matlab scripts/SSankey.m",
139
+ "sha256": "a41a399d1fa83a4ab7ffc00741bd30e708f8052713b315404465748686956413",
140
+ "language": "MATLAB",
141
+ "lines": 468,
142
+ "truncated": false,
143
+ "block": 3,
144
+ "row": 16973
145
+ },
146
+ {
147
+ "path": "scripts/matlab scripts/biChordChart.m",
148
+ "sha256": "8345c95f5e56031df9d06c5dbbb896ebbbe8db0ec9c2614e21f719042275f66d",
149
+ "language": "MATLAB",
150
+ "lines": 321,
151
+ "truncated": false,
152
+ "block": 3,
153
+ "row": 16657
154
+ },
155
+ {
156
+ "path": "scripts/matlab scripts/extract_daytime_of_detections.m",
157
+ "sha256": "a447328cd123f457f502b44d559539365521423f53e42ec9f9189437f55b64d8",
158
+ "language": "MATLAB",
159
+ "lines": 51,
160
+ "truncated": false,
161
+ "block": 3,
162
+ "row": 12152
163
+ },
164
+ {
165
+ "path": "scripts/matlab scripts/graph_social_interaction_dayresolution.m",
166
+ "sha256": "7064c302db8dccf3376647f7bc912ebc4caee2e4c7d59831b56f2021b59289a2",
167
+ "language": "MATLAB",
168
+ "lines": 199,
169
+ "truncated": false,
170
+ "block": 3,
171
+ "row": 15732
172
+ },
173
+ {
174
+ "path": "scripts/matlab scripts/plot_daytime_detected.m",
175
+ "sha256": "13715a757b71ff1a0dac39d8e22bcc874a3420ae60907eab6b23d66f19bd6d42",
176
+ "language": "MATLAB",
177
+ "lines": 40,
178
+ "truncated": false,
179
+ "block": 3,
180
+ "row": 10817
181
+ },
182
+ {
183
+ "path": "scripts/matlab scripts/sankey_plots.m",
184
+ "sha256": "ac77fd51e094f0a2a1222204f104847c7dca4792f0b21cf689d1e37704fa1c05",
185
+ "language": "MATLAB",
186
+ "lines": 111,
187
+ "truncated": false,
188
+ "block": 3,
189
+ "row": 13915
190
+ },
191
+ {
192
+ "path": "scripts/old_scripts/age_influence.py",
193
+ "sha256": "ca40f6223e3edfdca9fb477e4537ca7fc1a8b4c3b7d2d706105e73fe768c5f13",
194
+ "language": "Python",
195
+ "lines": 301,
196
+ "truncated": false,
197
+ "block": 3,
198
+ "row": 26147
199
+ },
200
+ {
201
+ "path": "scripts/old_scripts/bootstrap_pop.py",
202
+ "sha256": "48bb3e288b10835be36b67bb3501b0660a7a11379656ad96cb8c1cb853808c63",
203
+ "language": "Python",
204
+ "lines": 570,
205
+ "truncated": false,
206
+ "block": 3,
207
+ "row": 27384
208
+ },
209
+ {
210
+ "path": "scripts/old_scripts/boxplots.py",
211
+ "sha256": "f6f363c4ec8cd1da04435d7f639a4d72412e6cd41379c829b91a295184b98513",
212
+ "language": "Python",
213
+ "lines": 540,
214
+ "truncated": false,
215
+ "block": 3,
216
+ "row": 27323
217
+ },
218
+ {
219
+ "path": "scripts/old_scripts/chasings_counting.py",
220
+ "sha256": "45553ea1c66b02dbc7b54854325ef94dd1eb740f1e37b51ba418d0c2841456e0",
221
+ "language": "Python",
222
+ "lines": 361,
223
+ "truncated": false,
224
+ "block": 3,
225
+ "row": 26556
226
+ },
227
+ {
228
+ "path": "scripts/old_scripts/david_score_limitations.py",
229
+ "sha256": "85ec1b2c68826649b44b62d95e7801e32aeab47c1df662cb963395419d383cc8",
230
+ "language": "Python",
231
+ "lines": 50,
232
+ "truncated": false,
233
+ "block": 3,
234
+ "row": 19713
235
+ },
236
+ {
237
+ "path": "scripts/old_scripts/day_to_day_fractions.py",
238
+ "sha256": "d16af9fa29e6612d112a5978d185d9fce2b27d11596a9cd9fb8ab935873a2d4c",
239
+ "language": "Python",
240
+ "lines": 108,
241
+ "truncated": false,
242
+ "block": 3,
243
+ "row": 21992
244
+ },
245
+ {
246
+ "path": "scripts/old_scripts/figures_for_review.py",
247
+ "sha256": "0f740c236aa2dc4e29833014698c31838b445ef2bcb6e97ec188a9912fbb47cf",
248
+ "language": "Python",
249
+ "lines": 49,
250
+ "truncated": false,
251
+ "block": 3,
252
+ "row": 20323
253
+ },
254
+ {
255
+ "path": "scripts/old_scripts/mk_histology_df.py",
256
+ "sha256": "4796f768f79668cb708577265f31bae826e4c33df9e82b239b4d38a80ff2306c",
257
+ "language": "Python",
258
+ "lines": 43,
259
+ "truncated": false,
260
+ "block": 3,
261
+ "row": 20177
262
+ },
263
+ {
264
+ "path": "scripts/old_scripts/rc_membership.py",
265
+ "sha256": "cfcf4f71c05af42636b651abb1ff76f9827d3fd19d0849ad6e9fdb693183cec9",
266
+ "language": "Python",
267
+ "lines": 194,
268
+ "truncated": false,
269
+ "block": 3,
270
+ "row": 25173
271
+ },
272
+ {
273
+ "path": "scripts/old_scripts/rc_unstability_explanation.py",
274
+ "sha256": "eeba6a6c48e8ac5176520a4150834b4a805f1ff423a0ac5568fe90f9dac6b505",
275
+ "language": "Python",
276
+ "lines": 41,
277
+ "truncated": false,
278
+ "block": 3,
279
+ "row": 19673
280
+ },
281
+ {
282
+ "path": "scripts/old_scripts/temporal_graph_metrics.py",
283
+ "sha256": "5238f57feef24c9ce4806b5ecc2e8567a49232a12f07869b32dbd9cedf220a0c",
284
+ "language": "Python",
285
+ "lines": 513,
286
+ "truncated": false,
287
+ "block": 3,
288
+ "row": 27451
289
+ },
290
+ {
291
+ "path": "scripts/old_undirected_graph_metrics.py",
292
+ "sha256": "d173e529c58ae37f82ff0a06c9d75d03830b73d43a04343a1d960b43191c82ce",
293
+ "language": "Python",
294
+ "lines": 548,
295
+ "truncated": false,
296
+ "block": 3,
297
+ "row": 27533
298
+ },
299
+ {
300
+ "path": "scripts/rc_in_graph_plots.py",
301
+ "sha256": "c30a9f9d175088c5228de36a29c8cc5770fd1f045d458d579f1196e53791d8ab",
302
+ "language": "Python",
303
+ "lines": 113,
304
+ "truncated": false,
305
+ "block": 3,
306
+ "row": 23285
307
+ },
308
+ {
309
+ "path": "scripts/reshuffling_correlations.py",
310
+ "sha256": "b2ed5e32ffa33b7ea82994948fb1aa08483338d61ddc4a496e0f8d7232ec94a9",
311
+ "language": "Python",
312
+ "lines": 470,
313
+ "truncated": false,
314
+ "block": 3,
315
+ "row": 27224
316
+ },
317
+ {
318
+ "path": "scripts/significance_plots.py",
319
+ "sha256": "e8f714e57aeeaf7fa130d37a295efbba86f0bd7d4765a9f46ec184f588169fba",
320
+ "language": "Python",
321
+ "lines": 449,
322
+ "truncated": false,
323
+ "block": 3,
324
+ "row": 27394
325
+ },
326
+ {
327
+ "path": "scripts/undirected_temporal_graph_metrics.py",
328
+ "sha256": "2b2aeed859914972e9c37cafaf21af2caacd66141c317f4cf16ffd0ac8919fa1",
329
+ "language": "Python",
330
+ "lines": 513,
331
+ "truncated": false,
332
+ "block": 3,
333
+ "row": 27463
334
+ },
335
+ {
336
+ "path": "scripts/utils.py",
337
+ "sha256": "ee470d97a0f0b33a74e036a5b1ab438779c0122fedfb4a0391f26f52e15d1264",
338
+ "language": "Python",
339
+ "lines": 348,
340
+ "truncated": false,
341
+ "block": 3,
342
+ "row": 26225
343
+ },
344
+ {
345
+ "path": "scripts/weighted_rc_coeff.py",
346
+ "sha256": "25ae10b07e75421d0f5cb0d08711ffbef932ef0044f53cea90d2041a3b0866ab",
347
+ "language": "Python",
348
+ "lines": 160,
349
+ "truncated": false,
350
+ "block": 3,
351
+ "row": 24235
352
+ },
353
+ {
354
+ "path": "src/clustering_algorithm.py",
355
+ "sha256": "a8997afb526211b9b40c9ee07dc0b6f89cd5bc837c72642dc02a9df1cb44f477",
356
+ "language": "Python",
357
+ "lines": 468,
358
+ "truncated": false,
359
+ "block": 3,
360
+ "row": 27310
361
+ },
362
+ {
363
+ "path": "src/multilayer_plot.py",
364
+ "sha256": "b377f2cdde3979286dd428515351eb3d2038cd43e0c0aac3b863cd8a955d1550",
365
+ "language": "Python",
366
+ "lines": 274,
367
+ "truncated": false,
368
+ "block": 3,
369
+ "row": 25995
370
+ },
371
+ {
372
+ "path": "src/multilayer_sc.py",
373
+ "sha256": "a5334f2dbb44351b7720e1ca4229453783d27d583eab4e05f95138b35ffaebd7",
374
+ "language": "Python",
375
+ "lines": 319,
376
+ "truncated": false,
377
+ "block": 3,
378
+ "row": 25320
379
+ },
380
+ {
381
+ "path": "src/read_graph.py",
382
+ "sha256": "5be66b9cd13f687e899f164a89f07767effb4de4018ccadf40c26d980cd8b96d",
383
+ "language": "Python",
384
+ "lines": 922,
385
+ "truncated": false,
386
+ "block": 3,
387
+ "row": 27871
388
+ }
389
+ ]
390
+ }
manifests/12/github.com__tanxiaoxiu__gnode.json ADDED
@@ -0,0 +1,93 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/tanxiaoxiu/gnode",
4
+ "url": "https://github.com/tanxiaoxiu/gNODE",
5
+ "host": "github.com",
6
+ "commit": "7a9e19475f8391ad629284fea8dbffb794fea6b5",
7
+ "license": "GPL-3.0",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986",
14
+ "language": "License",
15
+ "lines": 674,
16
+ "truncated": false,
17
+ "block": 1,
18
+ "row": 2235
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "891fa18f7d1bba073c8cbe33c57c14cd79d53f507c544616890c41bc6c72f899",
23
+ "language": "Text",
24
+ "lines": 12,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2329
28
+ },
29
+ {
30
+ "path": "code/NODE_cross_validation.py",
31
+ "sha256": "9a5b691e5ba51ba40d358c92148cedd9a4361812d2e0017d0da05eecf3408386",
32
+ "language": "Python",
33
+ "lines": 291,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 25134
37
+ },
38
+ {
39
+ "path": "code/gNODE_cross_validation.py",
40
+ "sha256": "435e6e41e61e42858af198e79084e523a1c650226bc9fec60e9346171bc7ff19",
41
+ "language": "Python",
42
+ "lines": 302,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 25500
46
+ },
47
+ {
48
+ "path": "code/pNODE_cross_validation.py",
49
+ "sha256": "7583f426d49885c4b702964f35fc11500f7bcc595b968922c1760078f18c86c5",
50
+ "language": "Python",
51
+ "lines": 347,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 25807
55
+ },
56
+ {
57
+ "path": "code/train_NODE.py",
58
+ "sha256": "ce339193af697daa3ca49914564578f5ce106f95d131bec9b64983cd39093bc7",
59
+ "language": "Python",
60
+ "lines": 186,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 23470
64
+ },
65
+ {
66
+ "path": "code/train_gNODE.py",
67
+ "sha256": "7f62949363d59dc7cb1cb7e1217ec3966d5ee81b15b4ace91a95d7225e1131e9",
68
+ "language": "Python",
69
+ "lines": 216,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 24218
73
+ },
74
+ {
75
+ "path": "code/train_pNODE.py",
76
+ "sha256": "de2c6e03ae2259c5f71aba726da58e70d87cec365d6f562576a8dc1b0801b782",
77
+ "language": "Python",
78
+ "lines": 229,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 24477
82
+ },
83
+ {
84
+ "path": "simulation/generation_data/simulation_data.R",
85
+ "sha256": "fbdabe0c26d1708669dd64c0c6ca48832f05a67cb0aae1a198f02398a020b9e4",
86
+ "language": "R",
87
+ "lines": 225,
88
+ "truncated": false,
89
+ "block": 4,
90
+ "row": 844
91
+ }
92
+ ]
93
+ }
manifests/12/github.com__tnguyen1992__tinydancer.json ADDED
@@ -0,0 +1,597 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/tnguyen1992/tinydancer",
4
+ "url": "https://archive.softwareheritage.org/swh:1:dir:a35d245c82aeef93b846e1170fb22199ef27d959;origin=https://github.com/tnguyen1992/tinydancer;visit=swh:1:snp:a2fcc0db5ec53c0dd5df14fbb0b23b89cc793743;anchor=swh:1:rev:8bf6034eb98345dfd87bf93b26890f39599fa1cb",
5
+ "host": "github.com",
6
+ "commit": "8c46a2ded4fc6bea25e14964a8e11b6a91deba43",
7
+ "license": "CC0-1.0",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "a2010f343487d3f7618affe54f789f5487602331c0a8d03f49e9a7c547cf0499",
14
+ "language": "License",
15
+ "lines": 121,
16
+ "truncated": false,
17
+ "block": 1,
18
+ "row": 2210
19
+ },
20
+ {
21
+ "path": "PM_pipeline/QoM_pm_vFinal.py",
22
+ "sha256": "5f9011a17a79cae01ac7191fd9f1035d443e60298699d996682b3bf7ed6c3ca4",
23
+ "language": "Python",
24
+ "lines": 947,
25
+ "truncated": false,
26
+ "block": 3,
27
+ "row": 27989
28
+ },
29
+ {
30
+ "path": "PM_pipeline/Step2_tinydancers_velo_epoching.m",
31
+ "sha256": "5c3bd8844564027ef60aa203bf0b093f16eff59fc966942828593fe431a855d5",
32
+ "language": "MATLAB",
33
+ "lines": 116,
34
+ "truncated": false,
35
+ "block": 3,
36
+ "row": 14728
37
+ },
38
+ {
39
+ "path": "PM_pipeline/Step2_tinydancers_velo_epoching_ampenv.m",
40
+ "sha256": "e2c444812667081f85461357a7c1fa2fa4c599ebade55359ef4288cb5c29ae05",
41
+ "language": "MATLAB",
42
+ "lines": 314,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 16543
46
+ },
47
+ {
48
+ "path": "PM_pipeline/Step2_tinydancers_velo_fft.m",
49
+ "sha256": "bace761eba51d2e48b7aff1748c7b11df617f1c431cec79e939eae6c97ba80fa",
50
+ "language": "MATLAB",
51
+ "lines": 71,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 13189
55
+ },
56
+ {
57
+ "path": "PM_pipeline/Step2_tinydancers_velo_tfr.m",
58
+ "sha256": "a44237f951e50419d4e66987ea18c9d795f4a715f6fa51aa6c3dee07c864df1a",
59
+ "language": "MATLAB",
60
+ "lines": 77,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 13497
64
+ },
65
+ {
66
+ "path": "PM_pipeline/Step3_tinydancers_velo_erp.m",
67
+ "sha256": "064fe58080acfeb93730d202d98f9236d991b0028705fce825f94c356d9576c2",
68
+ "language": "MATLAB",
69
+ "lines": 191,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 15896
73
+ },
74
+ {
75
+ "path": "PM_pipeline/Step3_tinydancers_velo_frequency.m",
76
+ "sha256": "39fe940bf240ad1c25b1edf84c69121fc22259b2811625373bc86ea36e2e760c",
77
+ "language": "MATLAB",
78
+ "lines": 220,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 16086
82
+ },
83
+ {
84
+ "path": "PM_pipeline/Step4_tinydancers_velo_groupautocor.m",
85
+ "sha256": "af69fd8fc53adce27ae38508b28fa0ad8c4638585ddae4f2b34f375914183bfa",
86
+ "language": "MATLAB",
87
+ "lines": 293,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 16256
91
+ },
92
+ {
93
+ "path": "PM_pipeline/Step4_tinydancers_velo_grouperp.m",
94
+ "sha256": "985d9b8a39f3378f36eed1ff39baf12ddab5fa07197d4fe44dc4f7efa21bad99",
95
+ "language": "MATLAB",
96
+ "lines": 930,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 17130
100
+ },
101
+ {
102
+ "path": "PM_pipeline/deeplabcut_musicom.py",
103
+ "sha256": "6a379c9b2843fc7955c3333d837f625debfca52a730eac4a10af21914fc7f070",
104
+ "language": "Python",
105
+ "lines": 10,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 17689
109
+ },
110
+ {
111
+ "path": "PM_pipeline/importfile_pm.m",
112
+ "sha256": "3e29f7c6769bb6d288e7c0f0447f477a8b71182ef6d969e7aa69fd47d197f87f",
113
+ "language": "MATLAB",
114
+ "lines": 49,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 11964
118
+ },
119
+ {
120
+ "path": "PM_pipeline/importpm.m",
121
+ "sha256": "a57f3a2eb2f106e94b55c9fbc1667a4c9cc92fff0c397ce0e02ecb5e98f12854",
122
+ "language": "MATLAB",
123
+ "lines": 49,
124
+ "truncated": false,
125
+ "block": 3,
126
+ "row": 11962
127
+ },
128
+ {
129
+ "path": "PM_pipeline/importvelocity.m",
130
+ "sha256": "42a63c197cda5d3b9b185cb0ba0518ca1655e27a506461cb9e24abd01bf40f6a",
131
+ "language": "MATLAB",
132
+ "lines": 43,
133
+ "truncated": false,
134
+ "block": 3,
135
+ "row": 11610
136
+ },
137
+ {
138
+ "path": "PM_pipeline/importvelocity_xy.m",
139
+ "sha256": "4935f8f99757fde2d5fd3effa9c2dcd39aef80ea9234dd11caa72be7a1f9a4e6",
140
+ "language": "MATLAB",
141
+ "lines": 43,
142
+ "truncated": false,
143
+ "block": 3,
144
+ "row": 12381
145
+ },
146
+ {
147
+ "path": "PM_pipeline/makefiedltripfromvelocity.m",
148
+ "sha256": "a6293b5cc6e6abe0529a09ffeca958c7ffa3c1564c26023d090e8f31131b23aa",
149
+ "language": "MATLAB",
150
+ "lines": 151,
151
+ "truncated": false,
152
+ "block": 3,
153
+ "row": 14916
154
+ },
155
+ {
156
+ "path": "PM_pipeline/velo2ft.m",
157
+ "sha256": "3007c60995b9b3e9624beaaaba32b925e42006164a120ddcaad73468d419f01e",
158
+ "language": "MATLAB",
159
+ "lines": 140,
160
+ "truncated": false,
161
+ "block": 3,
162
+ "row": 15002
163
+ },
164
+ {
165
+ "path": "R/MUSICOM_R.R",
166
+ "sha256": "ffe6805eb38d30f2f7a404e4ac5b8801e3fb9ec34560c5dd64745c8c4ca2353d",
167
+ "language": "R",
168
+ "lines": 455,
169
+ "truncated": false,
170
+ "block": 4,
171
+ "row": 1046
172
+ },
173
+ {
174
+ "path": "R/MUSICOM_kinematics.R",
175
+ "sha256": "d32ad995a04b2aa3ffb3c9509960d78ef2ecdab18f92fbeeb57bbcefc83188f4",
176
+ "language": "R",
177
+ "lines": 285,
178
+ "truncated": false,
179
+ "block": 4,
180
+ "row": 945
181
+ },
182
+ {
183
+ "path": "R/TinyDancer_granger_allcond.R",
184
+ "sha256": "c3bc7a44f02018f0fdd16e8d5abb414823fe8e0ad568b6c0ff03b7a2b0aea862",
185
+ "language": "R",
186
+ "lines": 995,
187
+ "truncated": false,
188
+ "block": 4,
189
+ "row": 1174
190
+ },
191
+ {
192
+ "path": "R/TinyDancer_granger_freq.R",
193
+ "sha256": "14918f95e50da63c8e854d3f80609a5fdb5b073ab4cecb06ebd7c2efdc06f110",
194
+ "language": "R",
195
+ "lines": 656,
196
+ "truncated": false,
197
+ "block": 4,
198
+ "row": 1091
199
+ },
200
+ {
201
+ "path": "R/TinyDancer_mus_12m_cPM.R",
202
+ "sha256": "f59129b8047ad0a4c5877296d7027ef0fd265049561a3d2d0ba92b568acf956f",
203
+ "language": "R",
204
+ "lines": 320,
205
+ "truncated": false,
206
+ "block": 4,
207
+ "row": 995
208
+ },
209
+ {
210
+ "path": "R/TinyDancer_mus_3m_cPM.R",
211
+ "sha256": "1d50efc9eff03f8485d04d4903013a4591c3289a4d2277ba8e45a6c86aa1fee3",
212
+ "language": "R",
213
+ "lines": 333,
214
+ "truncated": false,
215
+ "block": 4,
216
+ "row": 1013
217
+ },
218
+ {
219
+ "path": "R/TinyDancer_mus_6m_cPM.R",
220
+ "sha256": "a75fe3146281d5a9997c1cecc791755f237f5847b78eba949c1ec247e37de731",
221
+ "language": "R",
222
+ "lines": 319,
223
+ "truncated": false,
224
+ "block": 4,
225
+ "row": 1005
226
+ },
227
+ {
228
+ "path": "R/TinyDancer_qom.R",
229
+ "sha256": "3f2464e940c1e9e1d62650189c16bf5928a9859872718c5ac3649c2d9edceb5b",
230
+ "language": "R",
231
+ "lines": 371,
232
+ "truncated": false,
233
+ "block": 4,
234
+ "row": 1028
235
+ },
236
+ {
237
+ "path": "README.md",
238
+ "sha256": "6940f47b3bb277daf26ebe8fe632ffdbd3ca36755d95b9130d5ca042b59e2609",
239
+ "language": "Text",
240
+ "lines": 23,
241
+ "truncated": false,
242
+ "block": 4,
243
+ "row": 2431
244
+ },
245
+ {
246
+ "path": "Step1_tinydancers_processing_adult.m",
247
+ "sha256": "2749bbbb90d1284dafedd91f5b55361babb488671f15d6f48ee1a5d974c14f8a",
248
+ "language": "MATLAB",
249
+ "lines": 127,
250
+ "truncated": false,
251
+ "block": 3,
252
+ "row": 14823
253
+ },
254
+ {
255
+ "path": "Step1_tinydancers_processing_rerefpre.m",
256
+ "sha256": "f3a450a079005232f0afecb2e34dabcda691613d3fd2fb4a7d5c855b66284a3f",
257
+ "language": "MATLAB",
258
+ "lines": 117,
259
+ "truncated": false,
260
+ "block": 3,
261
+ "row": 14933
262
+ },
263
+ {
264
+ "path": "Step2_tinydancers_epoching.m",
265
+ "sha256": "60195cfbec39efbb438bf738df205f009928fbd83b070da4361929c8d9311256",
266
+ "language": "MATLAB",
267
+ "lines": 142,
268
+ "truncated": false,
269
+ "block": 3,
270
+ "row": 16000
271
+ },
272
+ {
273
+ "path": "Step2_tinydancers_epoching_adults.m",
274
+ "sha256": "a1b5b350077dd41ba1789eed6fc69f5eb828fbda32f89581b6c5c6ba29b84183",
275
+ "language": "MATLAB",
276
+ "lines": 135,
277
+ "truncated": false,
278
+ "block": 3,
279
+ "row": 15919
280
+ },
281
+ {
282
+ "path": "Step2_tinydancers_epoching_avtrials.m",
283
+ "sha256": "e2c780cd25214386dcf6f3aa37db4fe05fd967b3a365ee181487fc255e3ade4b",
284
+ "language": "MATLAB",
285
+ "lines": 164,
286
+ "truncated": false,
287
+ "block": 3,
288
+ "row": 15860
289
+ },
290
+ {
291
+ "path": "Step3_tinydancers_erp.m",
292
+ "sha256": "597a865253c6221572795b6e0c58185859c7f7bab90ada7b50fd2d594f115496",
293
+ "language": "MATLAB",
294
+ "lines": 110,
295
+ "truncated": false,
296
+ "block": 3,
297
+ "row": 15140
298
+ },
299
+ {
300
+ "path": "Step3_tinydancers_frequency.m",
301
+ "sha256": "6427a43ccff65324c12a4c591b4d718bba2e314a5d14e56e7254df1beba65906",
302
+ "language": "MATLAB",
303
+ "lines": 64,
304
+ "truncated": false,
305
+ "block": 3,
306
+ "row": 13015
307
+ },
308
+ {
309
+ "path": "Step4_tinydancers_grouperp.m",
310
+ "sha256": "8a1763e8a41de5ea8405850cd533159df7f9e8e62c2581447731e62e939420f3",
311
+ "language": "MATLAB",
312
+ "lines": 568,
313
+ "truncated": false,
314
+ "block": 3,
315
+ "row": 16977
316
+ },
317
+ {
318
+ "path": "Step4_tinydancers_groupssep.m",
319
+ "sha256": "b484f82949ab107008bf2253e3c56d396905c8b05e196515513003b68d3a49c6",
320
+ "language": "MATLAB",
321
+ "lines": 547,
322
+ "truncated": false,
323
+ "block": 3,
324
+ "row": 16966
325
+ },
326
+ {
327
+ "path": "functions/RFT_EEG_ICA.m",
328
+ "sha256": "1c67ccd792a0c9252cde4e6b9fafa7870efc33ac71cc99e604b6e9f4a7ae137d",
329
+ "language": "MATLAB",
330
+ "lines": 154,
331
+ "truncated": false,
332
+ "block": 3,
333
+ "row": 15510
334
+ },
335
+ {
336
+ "path": "functions/RFT_EEG_Visualise.m",
337
+ "sha256": "123317b362db09431c922e55bbff934b76448bf5b40e4d389addb874bcd3cdae",
338
+ "language": "MATLAB",
339
+ "lines": 26,
340
+ "truncated": false,
341
+ "block": 3,
342
+ "row": 9542
343
+ },
344
+ {
345
+ "path": "functions/RFT_IClabel.m",
346
+ "sha256": "653025cfbd5f77a96455746c2ab5bf69c190abcb2c5280cc31d6b368c7c704cd",
347
+ "language": "MATLAB",
348
+ "lines": 101,
349
+ "truncated": false,
350
+ "block": 3,
351
+ "row": 14842
352
+ },
353
+ {
354
+ "path": "functions/RFT_automaticICA.m",
355
+ "sha256": "004116c9aef32ec9f9a720b626f013fc4f75feb5c0a777e5fdae8abc4d129ae5",
356
+ "language": "MATLAB",
357
+ "lines": 39,
358
+ "truncated": false,
359
+ "block": 3,
360
+ "row": 10841
361
+ },
362
+ {
363
+ "path": "functions/RFT_clean_asr.m",
364
+ "sha256": "0cfcab17839192057b78b81d730ab137cb5aa7488b30db9d3859a1fa6619b40c",
365
+ "language": "MATLAB",
366
+ "lines": 197,
367
+ "truncated": false,
368
+ "block": 3,
369
+ "row": 16397
370
+ },
371
+ {
372
+ "path": "functions/RFT_clean_asr_combined_trials_ftstruct.m",
373
+ "sha256": "ac538dbd05e92d5ab8d0f90f29cef8b663ba887e98a9358db747f723ed81d7cf",
374
+ "language": "MATLAB",
375
+ "lines": 103,
376
+ "truncated": false,
377
+ "block": 3,
378
+ "row": 14464
379
+ },
380
+ {
381
+ "path": "functions/RFT_clean_flatlines.m",
382
+ "sha256": "4f8f92d137e8b11c956a313e00403f2cecd850a89e13a23dcbe3c57777f067b3",
383
+ "language": "MATLAB",
384
+ "lines": 39,
385
+ "truncated": false,
386
+ "block": 3,
387
+ "row": 11761
388
+ },
389
+ {
390
+ "path": "functions/RFT_code_to_load_eeglab_XYZtemplate.m",
391
+ "sha256": "79db6653094b72610515dbc5e3975273defa285c2ea6826df1794420c7e68460",
392
+ "language": "MATLAB",
393
+ "lines": 28,
394
+ "truncated": false,
395
+ "block": 3,
396
+ "row": 9799
397
+ },
398
+ {
399
+ "path": "functions/RFT_detect_FlatCorrNoise_electrodes.m",
400
+ "sha256": "d8fd14fc23a51daf6998375bb840bdc14c3a45aa5f5f66ff5c8ccb90130f19c3",
401
+ "language": "MATLAB",
402
+ "lines": 96,
403
+ "truncated": false,
404
+ "block": 3,
405
+ "row": 14239
406
+ },
407
+ {
408
+ "path": "functions/Trinh_MiniTrialMaker.m",
409
+ "sha256": "0f62728d99a04ff8ab2a42bbfe180131524fab526100b1dcb0f3aa2e77d07cf0",
410
+ "language": "MATLAB",
411
+ "lines": 73,
412
+ "truncated": false,
413
+ "block": 3,
414
+ "row": 13144
415
+ },
416
+ {
417
+ "path": "functions/Trinh_MiniTrialMakerAmpEnv.m",
418
+ "sha256": "6ab14b8b9a61775696ac608b08e2f6ac91249d7022ba583004c23180784c30a4",
419
+ "language": "MATLAB",
420
+ "lines": 73,
421
+ "truncated": false,
422
+ "block": 3,
423
+ "row": 13079
424
+ },
425
+ {
426
+ "path": "functions/Trinh_MovingMeanSpectra.m",
427
+ "sha256": "c4be2297d688a3e4f32bd6d7295bf6ffbc4802ddcb28b46b97e07f8dc605d6be",
428
+ "language": "MATLAB",
429
+ "lines": 12,
430
+ "truncated": false,
431
+ "block": 3,
432
+ "row": 8855
433
+ },
434
+ {
435
+ "path": "functions/Trinh_addTriggerChannel.m",
436
+ "sha256": "aabb7d90c8716d9ce50088dab61798068a8fbfc03f8ec94a0cbbe9bcba06f61b",
437
+ "language": "MATLAB",
438
+ "lines": 38,
439
+ "truncated": false,
440
+ "block": 3,
441
+ "row": 11029
442
+ },
443
+ {
444
+ "path": "functions/Trinh_addTriggerChannelBack.m",
445
+ "sha256": "e71471829b0203c3cf0b870c4acbf86e2c5c12d3c0ea1cc94ebcfea1a6e15b3a",
446
+ "language": "MATLAB",
447
+ "lines": 19,
448
+ "truncated": false,
449
+ "block": 3,
450
+ "row": 9948
451
+ },
452
+ {
453
+ "path": "functions/Trinh_automaticartefactdetect.m",
454
+ "sha256": "751e1b324dae622a7e593c420d716a36add8c5e55e827809b84a5ae6f8e672d0",
455
+ "language": "MATLAB",
456
+ "lines": 59,
457
+ "truncated": false,
458
+ "block": 3,
459
+ "row": 13524
460
+ },
461
+ {
462
+ "path": "functions/Trinh_baselinecorrection.m",
463
+ "sha256": "a3b12643dcc6c1dacf7a007c3bc96602dbc1a1b2aee7a01b67480f92f1e1db09",
464
+ "language": "MATLAB",
465
+ "lines": 10,
466
+ "truncated": false,
467
+ "block": 3,
468
+ "row": 8691
469
+ },
470
+ {
471
+ "path": "functions/Trinh_filterEEG.m",
472
+ "sha256": "92c2c2a7c29af988304e70e9c4ebfc03c1a31fcf4ad20a9b0cdb217195a4ed92",
473
+ "language": "MATLAB",
474
+ "lines": 31,
475
+ "truncated": false,
476
+ "block": 3,
477
+ "row": 10175
478
+ },
479
+ {
480
+ "path": "functions/Trinh_freq_normalize.m",
481
+ "sha256": "a39a0dbc0a012169aa7a912e98786712390a65e05187d6f0e65ddbc6a4302c88",
482
+ "language": "MATLAB",
483
+ "lines": 12,
484
+ "truncated": false,
485
+ "block": 3,
486
+ "row": 8852
487
+ },
488
+ {
489
+ "path": "functions/Trinh_happe_detectbadchannels.m",
490
+ "sha256": "4187add54027b56d9a51e75294f3e07c3d78fbaf4c6508306580ffb43411ffde",
491
+ "language": "MATLAB",
492
+ "lines": 76,
493
+ "truncated": false,
494
+ "block": 3,
495
+ "row": 13844
496
+ },
497
+ {
498
+ "path": "functions/Trinh_happe_wavThresh.m",
499
+ "sha256": "97c766a8e471e545c902fdd824f81cd5af2b30baeb984dfc5257b83bcda1eb31",
500
+ "language": "MATLAB",
501
+ "lines": 26,
502
+ "truncated": false,
503
+ "block": 3,
504
+ "row": 10657
505
+ },
506
+ {
507
+ "path": "functions/Trinh_interpolateChannels.m",
508
+ "sha256": "292bb27788c1cd42219ff9c43151ee67b4fa41ecbee56ff0bea55e7da1e46ee1",
509
+ "language": "MATLAB",
510
+ "lines": 15,
511
+ "truncated": false,
512
+ "block": 3,
513
+ "row": 9005
514
+ },
515
+ {
516
+ "path": "functions/Trinh_loadConditionData.m",
517
+ "sha256": "b7215a07eb10e946d0e5ae9634734e8f37e2bcc05cdd30ca968d7a5db24dc9b4",
518
+ "language": "MATLAB",
519
+ "lines": 36,
520
+ "truncated": false,
521
+ "block": 3,
522
+ "row": 10904
523
+ },
524
+ {
525
+ "path": "functions/Trinh_loadConditionData_usingendmarker.m",
526
+ "sha256": "a5a9f98117ba0c9a1eb60593193cbeef14700eecbeb0621e174dfb712dcfce31",
527
+ "language": "MATLAB",
528
+ "lines": 90,
529
+ "truncated": false,
530
+ "block": 3,
531
+ "row": 13783
532
+ },
533
+ {
534
+ "path": "functions/Trinh_makecontinData.m",
535
+ "sha256": "524a3b6beed8a22869e4cbc8227e5689af3c591e749ddd84040cfd415ef8f4b1",
536
+ "language": "MATLAB",
537
+ "lines": 28,
538
+ "truncated": false,
539
+ "block": 3,
540
+ "row": 10559
541
+ },
542
+ {
543
+ "path": "functions/Trinh_makecontinaveragedData.m",
544
+ "sha256": "ad462a316fdd195b4e5a274fe55f4190f84a4e75689c78c947db8a268ef4096f",
545
+ "language": "MATLAB",
546
+ "lines": 31,
547
+ "truncated": false,
548
+ "block": 3,
549
+ "row": 10824
550
+ },
551
+ {
552
+ "path": "functions/artifact_detect.m",
553
+ "sha256": "6b3bfd71199f8d401d74939b9fb14a08bb4951786d51ea40d213052d29edf37e",
554
+ "language": "MATLAB",
555
+ "lines": 19,
556
+ "truncated": false,
557
+ "block": 3,
558
+ "row": 10212
559
+ },
560
+ {
561
+ "path": "functions/artifact_sliding_threshold.m",
562
+ "sha256": "e5db8077b3c0aa4a97d17ee67aae6c4fd784dcf5313789f649c1265cc7f6a842",
563
+ "language": "MATLAB",
564
+ "lines": 120,
565
+ "truncated": false,
566
+ "block": 3,
567
+ "row": 15757
568
+ },
569
+ {
570
+ "path": "functions/artifact_sliding_threshold_rev.m",
571
+ "sha256": "e81e23ec903408e0123a864941965fd92d495aa440ad9e6bbaeb73b745ae5627",
572
+ "language": "MATLAB",
573
+ "lines": 37,
574
+ "truncated": false,
575
+ "block": 3,
576
+ "row": 11880
577
+ },
578
+ {
579
+ "path": "functions/artifact_threshold_rev.m",
580
+ "sha256": "8b81c23a3f70df1e9ed1c1be80637524a38f0a6ace764e0ddfe34caf629144b3",
581
+ "language": "MATLAB",
582
+ "lines": 38,
583
+ "truncated": false,
584
+ "block": 3,
585
+ "row": 11883
586
+ },
587
+ {
588
+ "path": "functions/artifact_threshold_revglob.m",
589
+ "sha256": "f97c18b2c5f13a75997944f32e8731edcb2f4b9bc50bd220a07193ff6de7f668",
590
+ "language": "MATLAB",
591
+ "lines": 43,
592
+ "truncated": false,
593
+ "block": 3,
594
+ "row": 12075
595
+ }
596
+ ]
597
+ }
manifests/13/github.com__nuoxuxu__sfari.json ADDED
@@ -0,0 +1,2181 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "github.com/nuoxuxu/sfari",
4
+ "url": "https://github.com/nuoxuxu/SFARI",
5
+ "host": "github.com",
6
+ "commit": "080e8a9cac3a1a16d9a6aa7e0b90028c46b81b3a",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "6300cd0365e86eb5915b47c72eda51963c0225146747cb936ec9224134ab76ea",
14
+ "language": "License",
15
+ "lines": 21,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 7917
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "6539b5ee85b6107e690df7ab79f575e3c0b7efb67396c34fb3dca4156e8a523c",
23
+ "language": "Text",
24
+ "lines": 205,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2577
28
+ },
29
+ {
30
+ "path": "SingleCell/ggplot_theme.R",
31
+ "sha256": "a677c74326f90e89e837202e59944b5e4aa4e2e047c1a8ae38613a77931a07c8",
32
+ "language": "R",
33
+ "lines": 46,
34
+ "truncated": false,
35
+ "block": 4,
36
+ "row": 264
37
+ },
38
+ {
39
+ "path": "SingleCell/ryp.py",
40
+ "sha256": "118a3a46ab27a257fcaf2959746547ce9c0999334bbb6a9073e31b595a8caccd",
41
+ "language": "Python",
42
+ "lines": 3837,
43
+ "truncated": true,
44
+ "block": 4,
45
+ "row": 121
46
+ },
47
+ {
48
+ "path": "SingleCell/single_cell.py",
49
+ "sha256": "3d67f0c967f439414b7116ea1f94c82d5e3447dad767bf57ecac3a643736567d",
50
+ "language": "Python",
51
+ "lines": 3957,
52
+ "truncated": true,
53
+ "block": 4,
54
+ "row": 128
55
+ },
56
+ {
57
+ "path": "SingleCell/utils.py",
58
+ "sha256": "5ede6aba2c2d51e5459649a4ef5fef27ee75ef52f9305137d6fe9b27bbea16ff",
59
+ "language": "Python",
60
+ "lines": 4351,
61
+ "truncated": true,
62
+ "block": 4,
63
+ "row": 129
64
+ },
65
+ {
66
+ "path": "bin/1_get_gc_exon_and_5utr_info.py",
67
+ "sha256": "79399b3b16cd0b711497bea3e2a5825159b899343b06809ca0f7840a24d5dba8",
68
+ "language": "Python",
69
+ "lines": 89,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 21804
73
+ },
74
+ {
75
+ "path": "bin/2_classify_5utr_status.py",
76
+ "sha256": "f80e1ce047343dcc436489b0405b46d38109308287a99bb8489871f5953015f6",
77
+ "language": "Python",
78
+ "lines": 229,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 24688
82
+ },
83
+ {
84
+ "path": "bin/3_merge_5utr_info_to_pclass_table.py",
85
+ "sha256": "691b0dada76adb4590e0affd9b71e6818fdac7fd3b2a853e0ac86d1e56cfe16c",
86
+ "language": "Python",
87
+ "lines": 23,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 18731
91
+ },
92
+ {
93
+ "path": "bin/LRS_datasets_overlap_exp_boxplot.R",
94
+ "sha256": "caadb32efff48ab65c1bb796a615eee05f0dcc6de388796eb9a80b8c0fd8324b",
95
+ "language": "R",
96
+ "lines": 98,
97
+ "truncated": false,
98
+ "block": 4,
99
+ "row": 531
100
+ },
101
+ {
102
+ "path": "bin/PITA_Gviz.R",
103
+ "sha256": "c60727366aa7c60b722bec74d093160de5bcec53a3ce3b8c6b48a749e5d2247c",
104
+ "language": "R",
105
+ "lines": 36,
106
+ "truncated": false,
107
+ "block": 4,
108
+ "row": 236
109
+ },
110
+ {
111
+ "path": "bin/add_phyloP_to_exonic_regions.py",
112
+ "sha256": "0719878468f61614f5e65994e690b16b151681606e249f1a0441a6c5a7540c9c",
113
+ "language": "Python",
114
+ "lines": 68,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 20673
118
+ },
119
+ {
120
+ "path": "bin/add_phyloP_to_splice_sites.py",
121
+ "sha256": "dce314da58e46a7fe831390cbfc70727b7045420e8908abd006407811bab84f1",
122
+ "language": "Python",
123
+ "lines": 81,
124
+ "truncated": false,
125
+ "block": 3,
126
+ "row": 21257
127
+ },
128
+ {
129
+ "path": "bin/comapre_LRS_datasets_venn.py",
130
+ "sha256": "ca1c331128fc885356c2e72d6e3f48d813a2fd9b5b982f6fe1ffbbfb300f342e",
131
+ "language": "Python",
132
+ "lines": 266,
133
+ "truncated": false,
134
+ "block": 3,
135
+ "row": 25609
136
+ },
137
+ {
138
+ "path": "bin/compare_fusion_venn.py",
139
+ "sha256": "8fed69f6fe99faa5aa49569af9ff3b53973804ae59a9de158e5a4f00305df53d",
140
+ "language": "Python",
141
+ "lines": 134,
142
+ "truncated": false,
143
+ "block": 3,
144
+ "row": 22737
145
+ },
146
+ {
147
+ "path": "bin/compare_to_patowary.py",
148
+ "sha256": "3e0227d9aceca5d8dd829d225b5bcfc7fae0895ff2e44bed5f036b1357ae0c24",
149
+ "language": "Python",
150
+ "lines": 53,
151
+ "truncated": false,
152
+ "block": 3,
153
+ "row": 20158
154
+ },
155
+ {
156
+ "path": "bin/compute_encode4_overlap.py",
157
+ "sha256": "80c48a279d3b9a685c01b8464b9a71b1df962573f3010dbf22b5d84e7f687c9a",
158
+ "language": "Python",
159
+ "lines": 86,
160
+ "truncated": false,
161
+ "block": 3,
162
+ "row": 21548
163
+ },
164
+ {
165
+ "path": "bin/duffy_t30_correlation.py",
166
+ "sha256": "7bf61ffb0c1cab58f4cd4aa87a54e71757f3c25036ca71a743edc84752569aa0",
167
+ "language": "Python",
168
+ "lines": 149,
169
+ "truncated": false,
170
+ "block": 3,
171
+ "row": 23112
172
+ },
173
+ {
174
+ "path": "bin/extract_cds.py",
175
+ "sha256": "c938f4507ee864c323f7e2e91ccff42de3aec24329cbff4db97b9cf3acb3dbd5",
176
+ "language": "Python",
177
+ "lines": 97,
178
+ "truncated": false,
179
+ "block": 3,
180
+ "row": 21770
181
+ },
182
+ {
183
+ "path": "bin/filter_by_exp_ext.py",
184
+ "sha256": "8d7ba6fcd2d4b4202fc5289236d0fe560d9a837f31104736c6e1b68efd7cc796",
185
+ "language": "Python",
186
+ "lines": 181,
187
+ "truncated": false,
188
+ "block": 3,
189
+ "row": 24120
190
+ },
191
+ {
192
+ "path": "bin/filter_joglekar_by_sample_count.py",
193
+ "sha256": "efba43b281731ca5ab8b3d227617a22fa7001f2ff8ada5724d07f8f17923b512",
194
+ "language": "Python",
195
+ "lines": 73,
196
+ "truncated": false,
197
+ "block": 3,
198
+ "row": 20934
199
+ },
200
+ {
201
+ "path": "bin/filter_orfanage_UCSC.py",
202
+ "sha256": "5ffb7596687eadb88e9e48415cdf37bccf2459963cd9e05038ffe2142716cb14",
203
+ "language": "Python",
204
+ "lines": 34,
205
+ "truncated": false,
206
+ "block": 3,
207
+ "row": 19707
208
+ },
209
+ {
210
+ "path": "bin/filter_reads.py",
211
+ "sha256": "163240a2d95ef0ddba0d551d59e8e7071773aeeb3b1618e800a259bbc4bfca0f",
212
+ "language": "Python",
213
+ "lines": 41,
214
+ "truncated": false,
215
+ "block": 3,
216
+ "row": 20052
217
+ },
218
+ {
219
+ "path": "bin/filter_scan_number.py",
220
+ "sha256": "8a517b3dd3c38b3631d5ddc270926a708e3c99596a18562818952b62a1ea03a0",
221
+ "language": "Python",
222
+ "lines": 129,
223
+ "truncated": false,
224
+ "block": 3,
225
+ "row": 22821
226
+ },
227
+ {
228
+ "path": "bin/format_exonic_region_files.R",
229
+ "sha256": "5b6aa0c5cb7b2abfab781844ec015d3879a78023061691d25e80cfba6c21d14a",
230
+ "language": "R",
231
+ "lines": 75,
232
+ "truncated": false,
233
+ "block": 4,
234
+ "row": 357
235
+ },
236
+ {
237
+ "path": "bin/get_best_orf.py",
238
+ "sha256": "9d49b7703c7ac6b542284aed66eee2765523a03fbfc44dbd7c2fe7fbd8705611",
239
+ "language": "Python",
240
+ "lines": 109,
241
+ "truncated": false,
242
+ "block": 3,
243
+ "row": 21903
244
+ },
245
+ {
246
+ "path": "bin/get_full_expression.py",
247
+ "sha256": "da0684f219f9c610a5840532f54bf91762c4c272dcc69903de51aceb3c399132",
248
+ "language": "Python",
249
+ "lines": 49,
250
+ "truncated": false,
251
+ "block": 3,
252
+ "row": 20238
253
+ },
254
+ {
255
+ "path": "bin/get_pita_read_names.py",
256
+ "sha256": "393ac1c49d225cb1e166b1bee7bd055aa0cb8ca691f99b17951a823b850e2e0e",
257
+ "language": "Python",
258
+ "lines": 31,
259
+ "truncated": false,
260
+ "block": 3,
261
+ "row": 19106
262
+ },
263
+ {
264
+ "path": "bin/make_peptide_gtf_file.py",
265
+ "sha256": "189caca6203da1aa94ea55f0782f5a838bc626f27de281a40aa025a002e0ab4c",
266
+ "language": "Python",
267
+ "lines": 216,
268
+ "truncated": false,
269
+ "block": 3,
270
+ "row": 25185
271
+ },
272
+ {
273
+ "path": "bin/make_protein_search_database.py",
274
+ "sha256": "0b8e82ed55ae022f0eb52e46184f276429c75937de113c721f67926100345441",
275
+ "language": "Python",
276
+ "lines": 63,
277
+ "truncated": false,
278
+ "block": 3,
279
+ "row": 21004
280
+ },
281
+ {
282
+ "path": "bin/novel_CDS.R",
283
+ "sha256": "99c01a1ec6480e850d8cc66a6cb9e5d674371ee8eea60f5ccb2b2a4ef8f1b6a6",
284
+ "language": "R",
285
+ "lines": 48,
286
+ "truncated": false,
287
+ "block": 4,
288
+ "row": 306
289
+ },
290
+ {
291
+ "path": "bin/novel_exonic_regions.R",
292
+ "sha256": "0e89949b1bf2e00210b62295ef330efd4befb017f876880c4307e8472e653361",
293
+ "language": "R",
294
+ "lines": 48,
295
+ "truncated": false,
296
+ "block": 4,
297
+ "row": 314
298
+ },
299
+ {
300
+ "path": "bin/novel_splice_sites.py",
301
+ "sha256": "f5f568fe5957e48bd56247dea0f9cc942bf8883573a12acd9dc3506fa9156c56",
302
+ "language": "Python",
303
+ "lines": 91,
304
+ "truncated": false,
305
+ "block": 3,
306
+ "row": 22064
307
+ },
308
+ {
309
+ "path": "bin/peptide_mapping.R",
310
+ "sha256": "42a2724f8fda465f4a3eabcd3d0e84ae1fbce480ef1941dcbdf1e14cde990b75",
311
+ "language": "R",
312
+ "lines": 109,
313
+ "truncated": false,
314
+ "block": 4,
315
+ "row": 603
316
+ },
317
+ {
318
+ "path": "bin/peptide_mapping.py",
319
+ "sha256": "46b76fe450c94dd5ac294e09cff71eb35269c3026dae71927618a18bb0d731cb",
320
+ "language": "Python",
321
+ "lines": 167,
322
+ "truncated": false,
323
+ "block": 3,
324
+ "row": 23692
325
+ },
326
+ {
327
+ "path": "bin/plot_lrs_calling_venn.py",
328
+ "sha256": "7df4dc8df2487e3c1b7ff4c0ebf4efeeb40d60be18688bb61a09a7da56e982ce",
329
+ "language": "Python",
330
+ "lines": 197,
331
+ "truncated": false,
332
+ "block": 3,
333
+ "row": 24654
334
+ },
335
+ {
336
+ "path": "bin/plot_lrs_comparison.py",
337
+ "sha256": "6ed8bb0cd48c83fbbda70fecdd2fb65d2d9a18b4f2a7faa8884abe585a303955",
338
+ "language": "Python",
339
+ "lines": 414,
340
+ "truncated": false,
341
+ "block": 3,
342
+ "row": 26594
343
+ },
344
+ {
345
+ "path": "bin/plot_pita_coupling.py",
346
+ "sha256": "63dca44d5137e018044e713a1b7f703e4a0895346648f6c0d9adea7ffa8ee5d5",
347
+ "language": "Python",
348
+ "lines": 222,
349
+ "truncated": false,
350
+ "block": 3,
351
+ "row": 24584
352
+ },
353
+ {
354
+ "path": "bin/plot_sr_cage_support.py",
355
+ "sha256": "1c04ebe070de0d9fe179b4373685aef62fdfdc8d3449110000e1739ea9bcd892",
356
+ "language": "Python",
357
+ "lines": 312,
358
+ "truncated": false,
359
+ "block": 3,
360
+ "row": 25719
361
+ },
362
+ {
363
+ "path": "bin/protein_classification.py",
364
+ "sha256": "bb4dcebe89ea2972b63afeeb57829edbe2212be9dfee444d261569e5435c226d",
365
+ "language": "Python",
366
+ "lines": 175,
367
+ "truncated": false,
368
+ "block": 3,
369
+ "row": 24664
370
+ },
371
+ {
372
+ "path": "bin/rename_cds_to_exon.py",
373
+ "sha256": "cef7d68547850dbab3739eb93c51266fd52befc00a1cf23bcedd8510487b387b",
374
+ "language": "Python",
375
+ "lines": 155,
376
+ "truncated": false,
377
+ "block": 3,
378
+ "row": 23719
379
+ },
380
+ {
381
+ "path": "bin/riboseq_track.R",
382
+ "sha256": "c3132a8698b1c4f436232e8396f5bdb26d712ba09d926398d1d0a598af5d6206",
383
+ "language": "R",
384
+ "lines": 38,
385
+ "truncated": false,
386
+ "block": 4,
387
+ "row": 242
388
+ },
389
+ {
390
+ "path": "bin/run_bambu.R",
391
+ "sha256": "c1b8dbb0f7adffea9eea8037a39f898fccee54d5f683e8d6b0a49d786a81ef3b",
392
+ "language": "R",
393
+ "lines": 28,
394
+ "truncated": false,
395
+ "block": 4,
396
+ "row": 198
397
+ },
398
+ {
399
+ "path": "bin/spearman_per_sample.py",
400
+ "sha256": "4ff41b26e8897c0aa97c2b0ea3ff08b13a9b3857a878eb5107c21f9ec6c1478a",
401
+ "language": "Python",
402
+ "lines": 141,
403
+ "truncated": false,
404
+ "block": 3,
405
+ "row": 22959
406
+ },
407
+ {
408
+ "path": "bin/src/plotting_functions.py",
409
+ "sha256": "f7932a4941df8916d5fe438183ccade0d1339362ca5315e77ecb913be41cd760",
410
+ "language": "Python",
411
+ "lines": 231,
412
+ "truncated": false,
413
+ "block": 3,
414
+ "row": 25146
415
+ },
416
+ {
417
+ "path": "bin/src/setup.py",
418
+ "sha256": "e4c4348ce31ca33dc6f9d8440c2423324b9455664fede783e0c07a21c987c5c9",
419
+ "language": "Python",
420
+ "lines": 6,
421
+ "truncated": false,
422
+ "block": 3,
423
+ "row": 17506
424
+ },
425
+ {
426
+ "path": "bin/src/utils.R",
427
+ "sha256": "b0dff61f775a4352fae270110ef479bc73d819d7ce35e914059d351c51fdda05",
428
+ "language": "R",
429
+ "lines": 41,
430
+ "truncated": false,
431
+ "block": 4,
432
+ "row": 297
433
+ },
434
+ {
435
+ "path": "bin/src/utils.py",
436
+ "sha256": "8ea0fa9521bb866a9b42518c1b2cd1d490fd9f921288241468bab32f6312eff3",
437
+ "language": "Python",
438
+ "lines": 257,
439
+ "truncated": false,
440
+ "block": 3,
441
+ "row": 25388
442
+ },
443
+ {
444
+ "path": "bin/subset_cpat_orfs.py",
445
+ "sha256": "54af1099d359ca8995c17cd5ec067c37bc172866ebefca5af3c7d4093a3b38c9",
446
+ "language": "Python",
447
+ "lines": 68,
448
+ "truncated": false,
449
+ "block": 3,
450
+ "row": 20389
451
+ },
452
+ {
453
+ "path": "bin/venn_orf_overlap.py",
454
+ "sha256": "90895e0da04daf60f95d84c6d12016383d6c3bfcec2b70068af4613e96a927de",
455
+ "language": "Python",
456
+ "lines": 59,
457
+ "truncated": false,
458
+ "block": 3,
459
+ "row": 20213
460
+ },
461
+ {
462
+ "path": "bin/wrangle_bambu_result.R",
463
+ "sha256": "ac7b95828d5648bee94e5f99ce6c9b4e7c745dc7f1e57bdc665f5cdc0042ac00",
464
+ "language": "R",
465
+ "lines": 21,
466
+ "truncated": false,
467
+ "block": 4,
468
+ "row": 196
469
+ },
470
+ {
471
+ "path": "notebooks/02_PacBio_vs_Illumina.qmd",
472
+ "sha256": "82a27e468bd3e6c316a8686baa68840095a790761863ebfc04fb302a53c65e64",
473
+ "language": "Quarto",
474
+ "lines": 218,
475
+ "truncated": false,
476
+ "block": 4,
477
+ "row": 137
478
+ },
479
+ {
480
+ "path": "notebooks/03_ORF_analysis.qmd",
481
+ "sha256": "b7597b60b3c0d9b1e0e7e36b5a06ec84ccf8ac645366b0be6b85314c45ac2acb",
482
+ "language": "Quarto",
483
+ "lines": 372,
484
+ "truncated": false,
485
+ "block": 4,
486
+ "row": 141
487
+ },
488
+ {
489
+ "path": "notebooks/IsoformSwitchAnalyzeR.rmd",
490
+ "sha256": "ffe8af78ff502bb3ab0dd415dba638219c6c8bb614669c845afe53914ad57451",
491
+ "language": "R",
492
+ "lines": 512,
493
+ "truncated": false,
494
+ "block": 4,
495
+ "row": 1031
496
+ },
497
+ {
498
+ "path": "notebooks/compare_ORF_prediction.rmd",
499
+ "sha256": "b27a3b6f0d10900ba43a0a6ad4312f4d845134a1451a30f0b90ae8c047520cfa",
500
+ "language": "R",
501
+ "lines": 205,
502
+ "truncated": false,
503
+ "block": 4,
504
+ "row": 780
505
+ },
506
+ {
507
+ "path": "notebooks/conservation.ipynb",
508
+ "sha256": "eaec4936d12f1955ad70dc6bd0eb807ace62964311ce50056d93ec82235f4a31",
509
+ "language": "Jupyter",
510
+ "lines": 59,
511
+ "truncated": false,
512
+ "block": 3,
513
+ "row": 7099
514
+ },
515
+ {
516
+ "path": "notebooks/for_Katherine.ipynb",
517
+ "sha256": "1698f639d9e49c3ce89b3c1bc638801e1500f4f2850bf1daa99eb049e4d7b024",
518
+ "language": "Jupyter",
519
+ "lines": 43,
520
+ "truncated": false,
521
+ "block": 3,
522
+ "row": 7064
523
+ },
524
+ {
525
+ "path": "notebooks/genomekit.qmd",
526
+ "sha256": "a4bccb361599bf2420da460942da515f5a92cebb85f6e4d5ac8222df4cd61021",
527
+ "language": "Quarto",
528
+ "lines": 17,
529
+ "truncated": false,
530
+ "block": 4,
531
+ "row": 134
532
+ },
533
+ {
534
+ "path": "notebooks/illumina_quant.qmd",
535
+ "sha256": "11839cf99beb3e8b7529d2f93718458309fa7d93282af13cbad6215fe5383f3a",
536
+ "language": "Quarto",
537
+ "lines": 123,
538
+ "truncated": false,
539
+ "block": 4,
540
+ "row": 136
541
+ },
542
+ {
543
+ "path": "notebooks/investigate_orfanage.ipynb",
544
+ "sha256": "e37adc5be3956bb8737907b6cbcafc2d74a16b569f7f15ed0537f7b8efbcc3e7",
545
+ "language": "Jupyter",
546
+ "lines": 80,
547
+ "truncated": false,
548
+ "block": 3,
549
+ "row": 7158
550
+ },
551
+ {
552
+ "path": "notebooks/levenshtein_distance.ipynb",
553
+ "sha256": "28b82ab32b994ab8cd6ab6fb4863f59ac417009ac1ac07a1a955d1fbd41d5e24",
554
+ "language": "Jupyter",
555
+ "lines": 402,
556
+ "truncated": false,
557
+ "block": 3,
558
+ "row": 7649
559
+ },
560
+ {
561
+ "path": "notebooks/polyA_tail_length.ipynb",
562
+ "sha256": "81c29ca51eae1e45dcef60ec852d4a26927abb69a7fdac2469dfdaf0295318d5",
563
+ "language": "Jupyter",
564
+ "lines": 97,
565
+ "truncated": false,
566
+ "block": 3,
567
+ "row": 7144
568
+ },
569
+ {
570
+ "path": "notebooks/preprocess_shiny.qmd",
571
+ "sha256": "d266f03e659d0adfb24e875e60b155dc6f23d2ff3b7ba27a9f3bc28aa01ee335",
572
+ "language": "Quarto",
573
+ "lines": 512,
574
+ "truncated": false,
575
+ "block": 4,
576
+ "row": 144
577
+ },
578
+ {
579
+ "path": "notebooks/proteome_summary.ipynb",
580
+ "sha256": "4df357eb530142fb8dbfc4a9458418d0774418c2cbf125c87aabc05cec89eba7",
581
+ "language": "Jupyter",
582
+ "lines": 317,
583
+ "truncated": false,
584
+ "block": 3,
585
+ "row": 7557
586
+ },
587
+ {
588
+ "path": "notebooks/transcriptome_figures.ipynb",
589
+ "sha256": "e1c1d22ab11bcd71d8510027a296293800e8b1dcf26d7cc45f3efde5a917c7e9",
590
+ "language": "Jupyter",
591
+ "lines": 200,
592
+ "truncated": false,
593
+ "block": 3,
594
+ "row": 7289
595
+ },
596
+ {
597
+ "path": "notebooks/variant.qmd",
598
+ "sha256": "033417db628b98ddd2c4b19ab8ff0337039f117858029d0b4f731f95d3124953",
599
+ "language": "Quarto",
600
+ "lines": 32,
601
+ "truncated": false,
602
+ "block": 4,
603
+ "row": 135
604
+ },
605
+ {
606
+ "path": "scripts/APA_AS_coordination_beta_binomial.R",
607
+ "sha256": "5c191082ffe8003b66881962e7da82e48db34414cf0836ffc4de87883818044f",
608
+ "language": "R",
609
+ "lines": 362,
610
+ "truncated": false,
611
+ "block": 4,
612
+ "row": 1033
613
+ },
614
+ {
615
+ "path": "scripts/DEG_illumina.R",
616
+ "sha256": "65e6c9045e7bc0bc7caed65b132c4bc88caf856f6a182ae03ab22ea046cb0ee0",
617
+ "language": "R",
618
+ "lines": 95,
619
+ "truncated": false,
620
+ "block": 4,
621
+ "row": 559
622
+ },
623
+ {
624
+ "path": "scripts/DEG_pacbio.R",
625
+ "sha256": "6501bbd4acfaf371fefd7e64f7d9eec2f630262e1428b6e918837bf048716c82",
626
+ "language": "R",
627
+ "lines": 80,
628
+ "truncated": false,
629
+ "block": 4,
630
+ "row": 466
631
+ },
632
+ {
633
+ "path": "scripts/Illumina_preprocess.R",
634
+ "sha256": "2a166f68f5a989db449db11b7c06dd25270a0bfe51d42c19d73c64a3912ef115",
635
+ "language": "R",
636
+ "lines": 46,
637
+ "truncated": false,
638
+ "block": 4,
639
+ "row": 403
640
+ },
641
+ {
642
+ "path": "scripts/IsoformSwitchAnalyzeR/Katherine_IsoformSwitchAnalyzeR.R",
643
+ "sha256": "3fef937f12d9d1e1708b5390e8a91ba27530a93f234e66f5416d82c65cb87ac8",
644
+ "language": "R",
645
+ "lines": 18,
646
+ "truncated": false,
647
+ "block": 4,
648
+ "row": 197
649
+ },
650
+ {
651
+ "path": "scripts/IsoformSwitchAnalyzeR/analyzeORF.R",
652
+ "sha256": "fa09a39e4ae5110c3abe4d216fdfef8edf263271c87480a6bdd03cb383bdbbb5",
653
+ "language": "R",
654
+ "lines": 7,
655
+ "truncated": false,
656
+ "block": 4,
657
+ "row": 177
658
+ },
659
+ {
660
+ "path": "scripts/IsoformSwitchAnalyzeR/analyzeSwitchConsequences.R",
661
+ "sha256": "d3eb5463f75ace2bf5ce19239f65131582c8c23336282bc20ddd0863e511c47b",
662
+ "language": "R",
663
+ "lines": 22,
664
+ "truncated": false,
665
+ "block": 4,
666
+ "row": 203
667
+ },
668
+ {
669
+ "path": "scripts/IsoformSwitchAnalyzeR/pfam_scan.sh",
670
+ "sha256": "ea3841398270230e3558e5277007ed28861c81ec9c57e8e01e2b915f016e3a25",
671
+ "language": "Shell",
672
+ "lines": 18,
673
+ "truncated": false,
674
+ "block": 4,
675
+ "row": 1527
676
+ },
677
+ {
678
+ "path": "scripts/IsoformSwitchAnalyzeR/process_DeepLoc2.py",
679
+ "sha256": "a1075756e997b7c234d1671cd67576f00d79de69381d3a1684fe1ed95339493d",
680
+ "language": "Python",
681
+ "lines": 17,
682
+ "truncated": false,
683
+ "block": 3,
684
+ "row": 18256
685
+ },
686
+ {
687
+ "path": "scripts/IsoformSwitchAnalyzeR/process_iupred.py",
688
+ "sha256": "3ef99390f61409e932993586eccd7296755e313a005bf1eb0a17f48d8feb3e3c",
689
+ "language": "Python",
690
+ "lines": 93,
691
+ "truncated": false,
692
+ "block": 3,
693
+ "row": 21108
694
+ },
695
+ {
696
+ "path": "scripts/IsoformSwitchAnalyzeR/process_pfam.py",
697
+ "sha256": "bd0a195dbbdc20217f0e83663f5c2dfc7c6ac622d1ba20244b03a2e48dd0ef6a",
698
+ "language": "Python",
699
+ "lines": 17,
700
+ "truncated": false,
701
+ "block": 3,
702
+ "row": 18240
703
+ },
704
+ {
705
+ "path": "scripts/IsoformSwitchAnalyzeR/process_signalP.py",
706
+ "sha256": "f47d50430c12ec3bb11bdb146b4905e8c336384c6ed0e819198d47c6cfcda27d",
707
+ "language": "Python",
708
+ "lines": 19,
709
+ "truncated": false,
710
+ "block": 3,
711
+ "row": 18470
712
+ },
713
+ {
714
+ "path": "scripts/IsoformSwitchAnalyzeR/run_DMTMHMM.sh",
715
+ "sha256": "2e1d678d9f0db3c195627c9fbab3bb354214bfcf1625285eb8888ec6653bf7c3",
716
+ "language": "Shell",
717
+ "lines": 26,
718
+ "truncated": false,
719
+ "block": 4,
720
+ "row": 1633
721
+ },
722
+ {
723
+ "path": "scripts/IsoformSwitchAnalyzeR/signalp.sh",
724
+ "sha256": "85a5e49ff25a880c06bc5904979a2da874d462b0036bfd4fcc06d7fd6da98165",
725
+ "language": "Shell",
726
+ "lines": 1,
727
+ "truncated": false,
728
+ "block": 4,
729
+ "row": 1300
730
+ },
731
+ {
732
+ "path": "scripts/IsoformSwitchAnalyzeR/submit_DeepTMHMM.sh",
733
+ "sha256": "9e55d7962d36d98ec4800a3b366e69a2326b1ae016336cf51d093aa3996760b4",
734
+ "language": "Shell",
735
+ "lines": 15,
736
+ "truncated": false,
737
+ "block": 4,
738
+ "row": 1581
739
+ },
740
+ {
741
+ "path": "scripts/IsoformSwitchAnalyzeR/submit_deeploc.sh",
742
+ "sha256": "73144834b66a1e60b1ec2125c7d6eb045b91584aa0799bba83b588bfc853131f",
743
+ "language": "Shell",
744
+ "lines": 14,
745
+ "truncated": false,
746
+ "block": 4,
747
+ "row": 1439
748
+ },
749
+ {
750
+ "path": "scripts/IsoformSwitchAnalyzeR/submit_iupred.sh",
751
+ "sha256": "505bf20f3b321d819c060c8ade820b952e76d3d34f0172b20e11ca3e4b3eb554",
752
+ "language": "Shell",
753
+ "lines": 9,
754
+ "truncated": false,
755
+ "block": 4,
756
+ "row": 1400
757
+ },
758
+ {
759
+ "path": "scripts/IsoseqsSwitchList_part1.R",
760
+ "sha256": "0e24717f83dddca6a013820cb2bd51b03a839468a73369d88b1560c6f1eaf112",
761
+ "language": "R",
762
+ "lines": 18,
763
+ "truncated": false,
764
+ "block": 4,
765
+ "row": 202
766
+ },
767
+ {
768
+ "path": "scripts/cage_polyA_SQANTI.py",
769
+ "sha256": "928bf4db43e7eabaab91236680f6d506b5daa67267995230596bf2fde051064c",
770
+ "language": "Python",
771
+ "lines": 85,
772
+ "truncated": false,
773
+ "block": 3,
774
+ "row": 21693
775
+ },
776
+ {
777
+ "path": "scripts/cdna_alignment_orf_to_genome_orf.sh",
778
+ "sha256": "62fa5840252a23091510302073ec3ee738436a91288654a5fee273f3edc00978",
779
+ "language": "Shell",
780
+ "lines": 17,
781
+ "truncated": false,
782
+ "block": 4,
783
+ "row": 1713
784
+ },
785
+ {
786
+ "path": "scripts/compare_ORF_prediction.py",
787
+ "sha256": "18d78b0e87d7a8a6f433ff73f3579b87cacd2e18fd889e99dc9c1d2a144c3255",
788
+ "language": "Python",
789
+ "lines": 129,
790
+ "truncated": false,
791
+ "block": 3,
792
+ "row": 23231
793
+ },
794
+ {
795
+ "path": "scripts/compare_to_patowary.R",
796
+ "sha256": "a82ba7499a586e188734f2b933e808a186fac270bce09192b21334654b2ba68e",
797
+ "language": "R",
798
+ "lines": 161,
799
+ "truncated": false,
800
+ "block": 4,
801
+ "row": 702
802
+ },
803
+ {
804
+ "path": "scripts/create_samplesheet.py",
805
+ "sha256": "6d88f6a9b1683c3bbc00b40a1bdc79082ae4e9756827db5d5626b272839911ab",
806
+ "language": "Python",
807
+ "lines": 19,
808
+ "truncated": false,
809
+ "block": 3,
810
+ "row": 18641
811
+ },
812
+ {
813
+ "path": "scripts/figures/figure_1/cell_quantification.R",
814
+ "sha256": "9b47c45ed45e79c91bec179399168f3a99622940bf0a370f1fa117f9b4ff4077",
815
+ "language": "R",
816
+ "lines": 26,
817
+ "truncated": false,
818
+ "block": 4,
819
+ "row": 215
820
+ },
821
+ {
822
+ "path": "scripts/figures/figure_1/individual_transcript_classification.R",
823
+ "sha256": "55ba15bcf34a97eb22863549775304799ae5b5e10b01841a8a8b4823c6c9b216",
824
+ "language": "R",
825
+ "lines": 76,
826
+ "truncated": false,
827
+ "block": 4,
828
+ "row": 468
829
+ },
830
+ {
831
+ "path": "scripts/figures/figure_1/isoform_per_gene.R",
832
+ "sha256": "970c4f3492d0fc3becc897d3aa92d21cd9e2af464aed8870278fbae70ca8eff8",
833
+ "language": "R",
834
+ "lines": 93,
835
+ "truncated": false,
836
+ "block": 4,
837
+ "row": 471
838
+ },
839
+ {
840
+ "path": "scripts/figures/figure_1/shreejoy_request_Mar_11.R",
841
+ "sha256": "215dedcef1ee68911b61f943ada5594d083c4822b5c1037395af5b381f515e0c",
842
+ "language": "R",
843
+ "lines": 39,
844
+ "truncated": false,
845
+ "block": 4,
846
+ "row": 251
847
+ },
848
+ {
849
+ "path": "scripts/figures/figure_1/sr_validation_pie.pdf.R",
850
+ "sha256": "83415418bf08e621226aef90af5933459710164d5eae790a634c9ec0724f96cd",
851
+ "language": "R",
852
+ "lines": 115,
853
+ "truncated": false,
854
+ "block": 4,
855
+ "row": 539
856
+ },
857
+ {
858
+ "path": "scripts/figures/figure_1/sr_validation_pie.py",
859
+ "sha256": "fea958e181d775d2ff6d32fd5221e06ac46f010fa1f30dad11fe6e02cca36c22",
860
+ "language": "Python",
861
+ "lines": 80,
862
+ "truncated": false,
863
+ "block": 3,
864
+ "row": 20780
865
+ },
866
+ {
867
+ "path": "scripts/figures/figure_1/sr_validation_pie_supplementary.py",
868
+ "sha256": "fd0028b8458f71a0555196955a48b96df35ed800e1313d553e5d44dbcca16c12",
869
+ "language": "Python",
870
+ "lines": 148,
871
+ "truncated": false,
872
+ "block": 3,
873
+ "row": 23642
874
+ },
875
+ {
876
+ "path": "scripts/figures/figure_1/transcript_classification.R",
877
+ "sha256": "4319e6598062f197d1976e30a678cba19bc20874236462304fe76ebece7e6aa4",
878
+ "language": "R",
879
+ "lines": 153,
880
+ "truncated": false,
881
+ "block": 4,
882
+ "row": 710
883
+ },
884
+ {
885
+ "path": "scripts/figures/figure_2/Gviz.R",
886
+ "sha256": "b14b13ef59c40df5c983305327dcf5f4cd864f639636b1ac987304cad099735e",
887
+ "language": "R",
888
+ "lines": 141,
889
+ "truncated": false,
890
+ "block": 4,
891
+ "row": 543
892
+ },
893
+ {
894
+ "path": "scripts/figures/figure_2/Gviz_examples.R",
895
+ "sha256": "9ff98a45edf27bf83dcc55ec8e818e0889025d002afbf7ba8837bce3f8e4f0d0",
896
+ "language": "R",
897
+ "lines": 90,
898
+ "truncated": false,
899
+ "block": 4,
900
+ "row": 482
901
+ },
902
+ {
903
+ "path": "scripts/figures/figure_2/Gviz_prep.py",
904
+ "sha256": "0c95772341a0b1781505a8cf5d5d15e61b5232cb0a9e7bec1da3f873d3a5b1d6",
905
+ "language": "Python",
906
+ "lines": 69,
907
+ "truncated": false,
908
+ "block": 3,
909
+ "row": 21126
910
+ },
911
+ {
912
+ "path": "scripts/figures/figure_2/Ribo-seq_SJ.py",
913
+ "sha256": "ae62eab81ff751d2735a8c73e91439e68c1134ec7f9f56d2f0daa75bca3af818",
914
+ "language": "Python",
915
+ "lines": 59,
916
+ "truncated": false,
917
+ "block": 3,
918
+ "row": 19560
919
+ },
920
+ {
921
+ "path": "scripts/figures/figure_2/Ribo-seq_pie.R",
922
+ "sha256": "6f34871383f560105f8aeaffa00adde4765abdd17ebf6d448f75424dd3fb3841",
923
+ "language": "R",
924
+ "lines": 199,
925
+ "truncated": false,
926
+ "block": 4,
927
+ "row": 768
928
+ },
929
+ {
930
+ "path": "scripts/figures/figure_2/peotein_classification.R",
931
+ "sha256": "2d6bb3243b61789c74758bc9996cf0fc1942c875d5436b93deb088550aa035f0",
932
+ "language": "R",
933
+ "lines": 74,
934
+ "truncated": false,
935
+ "block": 4,
936
+ "row": 424
937
+ },
938
+ {
939
+ "path": "scripts/figures/figure_2/peptide_mapping.R",
940
+ "sha256": "68d1ca1edeaf70f89de8a8a41d0d6d1be4c62a2fa4ab89efdf90d3d1d09aa83c",
941
+ "language": "R",
942
+ "lines": 89,
943
+ "truncated": false,
944
+ "block": 4,
945
+ "row": 549
946
+ },
947
+ {
948
+ "path": "scripts/figures/figure_2/peptide_pie.R",
949
+ "sha256": "63368bd3de1f05a46fda15fb9175a96d8ca236674d10601090b51c25c1a4963b",
950
+ "language": "R",
951
+ "lines": 68,
952
+ "truncated": false,
953
+ "block": 4,
954
+ "row": 422
955
+ },
956
+ {
957
+ "path": "scripts/figures/figure_2/protein_isoform_abundance_by_whether_validated.R",
958
+ "sha256": "8ce5c21f32e362e481d4dc2115e9657b9caa82e37fce17c87bab52f76ce411c3",
959
+ "language": "R",
960
+ "lines": 242,
961
+ "truncated": false,
962
+ "block": 4,
963
+ "row": 829
964
+ },
965
+ {
966
+ "path": "scripts/figures/figure_2/transcript_pie.R",
967
+ "sha256": "5af92f286e09b1a44259fc3107d76be94332fac5bd4ba20a1895f781e91e6cf4",
968
+ "language": "R",
969
+ "lines": 120,
970
+ "truncated": false,
971
+ "block": 4,
972
+ "row": 597
973
+ },
974
+ {
975
+ "path": "scripts/figures/figure_2/validation_by_peptide.R",
976
+ "sha256": "8bfe897e1cf08a6eb92e3a5d04dda84f761a43904b163197b32e348518dd2041",
977
+ "language": "R",
978
+ "lines": 65,
979
+ "truncated": false,
980
+ "block": 4,
981
+ "row": 397
982
+ },
983
+ {
984
+ "path": "scripts/figures/figure_3/CPM_DESeq2_clusters.R",
985
+ "sha256": "77699881f3b99357013f3b915a131ed2fa7c01b4b199435b459376333ea4d966",
986
+ "language": "R",
987
+ "lines": 607,
988
+ "truncated": false,
989
+ "block": 4,
990
+ "row": 1101
991
+ },
992
+ {
993
+ "path": "scripts/figures/figure_4/IsoformSwitchAnalyzeR.R",
994
+ "sha256": "12f9995006bcfbac5021955ce451cbea9f42d610ad5d7ad0111be19d40d526b3",
995
+ "language": "R",
996
+ "lines": 428,
997
+ "truncated": false,
998
+ "block": 4,
999
+ "row": 1073
1000
+ },
1001
+ {
1002
+ "path": "scripts/figures/figure_4/microexons.R",
1003
+ "sha256": "f021e7c31c86014d665837d2d3b039e02b0d4483c71af834a607f46f940df777",
1004
+ "language": "R",
1005
+ "lines": 316,
1006
+ "truncated": false,
1007
+ "block": 4,
1008
+ "row": 977
1009
+ },
1010
+ {
1011
+ "path": "scripts/figures/figure_4/new_functions.R",
1012
+ "sha256": "4b8d3c386fbeda3e26944e2305c238d9091026995cc1148076938a325ce0eda9",
1013
+ "language": "R",
1014
+ "lines": 2187,
1015
+ "truncated": false,
1016
+ "block": 4,
1017
+ "row": 1235
1018
+ },
1019
+ {
1020
+ "path": "scripts/figures/figure_5/APA.R",
1021
+ "sha256": "faeea25b8ec4175faf3094c496029c3fac6f05feaa1e8b4991b8b77ff3dbfccc",
1022
+ "language": "R",
1023
+ "lines": 744,
1024
+ "truncated": false,
1025
+ "block": 4,
1026
+ "row": 1127
1027
+ },
1028
+ {
1029
+ "path": "scripts/figures/figure_5/Fishers_exact_test.R",
1030
+ "sha256": "7c3d238a23ab22a971dc7249d4ff4ec4510cc83d6f56db68bde525084f7f5b50",
1031
+ "language": "R",
1032
+ "lines": 458,
1033
+ "truncated": false,
1034
+ "block": 4,
1035
+ "row": 1015
1036
+ },
1037
+ {
1038
+ "path": "scripts/figures/figure_5/Gviz.R",
1039
+ "sha256": "9306cf0a83fbb1d092776ba0b77ad8c75db9ca56ceeb4170fbf3b921366c598d",
1040
+ "language": "R",
1041
+ "lines": 57,
1042
+ "truncated": false,
1043
+ "block": 4,
1044
+ "row": 319
1045
+ },
1046
+ {
1047
+ "path": "scripts/figures/figure_5/Gviz_2.R",
1048
+ "sha256": "6e2e7fb1924da9ae9a01c83b7df09610e1cc63309c5f73f4cd18e9a3b04f19af",
1049
+ "language": "R",
1050
+ "lines": 77,
1051
+ "truncated": false,
1052
+ "block": 4,
1053
+ "row": 418
1054
+ },
1055
+ {
1056
+ "path": "scripts/figures/figure_5/QAPA.R",
1057
+ "sha256": "eabdb090280ae4e4d63167a77a4744963d822cbd4377dac3b2b4590286517437",
1058
+ "language": "R",
1059
+ "lines": 649,
1060
+ "truncated": false,
1061
+ "block": 4,
1062
+ "row": 1108
1063
+ },
1064
+ {
1065
+ "path": "scripts/figures/figure_5/event_TSS_categorization.R",
1066
+ "sha256": "9dc74f7924c6309bedb6602b6d31bf3a10bd08fd0f1184dbfbaa358f9b0c880f",
1067
+ "language": "R",
1068
+ "lines": 183,
1069
+ "truncated": false,
1070
+ "block": 4,
1071
+ "row": 728
1072
+ },
1073
+ {
1074
+ "path": "scripts/figures/figure_5/event_pA_categorization.R",
1075
+ "sha256": "befabf34ee71d414c0892f1b8e48070f019192ea3e06c8ec29e699681f0d12fb",
1076
+ "language": "R",
1077
+ "lines": 173,
1078
+ "truncated": false,
1079
+ "block": 4,
1080
+ "row": 735
1081
+ },
1082
+ {
1083
+ "path": "scripts/figures/figure_5/qapa.py",
1084
+ "sha256": "d324746f4f81e45eaa76f65001c9ec9fa8fc60681632018d759189c5f9ffee3e",
1085
+ "language": "Python",
1086
+ "lines": 320,
1087
+ "truncated": false,
1088
+ "block": 3,
1089
+ "row": 26292
1090
+ },
1091
+ {
1092
+ "path": "scripts/figures/figure_5/quasi_binomial.R",
1093
+ "sha256": "f62474de1b87b9779a65bf3c24f1e8e64c64def460af76f60303e41698107a12",
1094
+ "language": "R",
1095
+ "lines": 1340,
1096
+ "truncated": false,
1097
+ "block": 4,
1098
+ "row": 1200
1099
+ },
1100
+ {
1101
+ "path": "scripts/figures/figure_5/quasi_binomial_TSS.R",
1102
+ "sha256": "6af663f5103108e8f6054e73dd321698a4137a9b28143689f3838a0a9ca8e413",
1103
+ "language": "R",
1104
+ "lines": 1582,
1105
+ "truncated": false,
1106
+ "block": 4,
1107
+ "row": 1217
1108
+ },
1109
+ {
1110
+ "path": "scripts/figures/figure_5/suppa_code.sh",
1111
+ "sha256": "b70855336e071879686f51392fd752bd95c9f9cf81d33fa05dad806e1d121279",
1112
+ "language": "Shell",
1113
+ "lines": 2,
1114
+ "truncated": false,
1115
+ "block": 4,
1116
+ "row": 1343
1117
+ },
1118
+ {
1119
+ "path": "scripts/figures/figure_6/KCNQ2.R",
1120
+ "sha256": "49d562da5654fe16aff8e5e2c8614d17b72ded7e5ede6f1c8e1f9dc320131e6c",
1121
+ "language": "R",
1122
+ "lines": 181,
1123
+ "truncated": false,
1124
+ "block": 4,
1125
+ "row": 697
1126
+ },
1127
+ {
1128
+ "path": "scripts/figures/figure_6/ZNF292.R",
1129
+ "sha256": "2ec449ef7b279f6ad24983e981eb3ce4b942c588a42c63b9c3a59b8f877350fc",
1130
+ "language": "R",
1131
+ "lines": 150,
1132
+ "truncated": false,
1133
+ "block": 4,
1134
+ "row": 626
1135
+ },
1136
+ {
1137
+ "path": "scripts/figures/figure_6/combined_odds_plot.R",
1138
+ "sha256": "403c671df3d631b34a60fe9c9abfcd3cfa669f7bc2bc3639872ba5f6efed91d5",
1139
+ "language": "R",
1140
+ "lines": 60,
1141
+ "truncated": false,
1142
+ "block": 4,
1143
+ "row": 442
1144
+ },
1145
+ {
1146
+ "path": "scripts/figures/figure_6/isoform_barplot.R",
1147
+ "sha256": "df3847b805ae2828675ee3f63285f3d4730594024d5dc8c87d206186441b7e9e",
1148
+ "language": "R",
1149
+ "lines": 49,
1150
+ "truncated": false,
1151
+ "block": 4,
1152
+ "row": 300
1153
+ },
1154
+ {
1155
+ "path": "scripts/figures/figure_6/phyloP_boxplot.R",
1156
+ "sha256": "ed6344225c668e67c8d2b94221854c5297b3edaa7ff9891214a2e7fb994b7e92",
1157
+ "language": "R",
1158
+ "lines": 143,
1159
+ "truncated": false,
1160
+ "block": 4,
1161
+ "row": 660
1162
+ },
1163
+ {
1164
+ "path": "scripts/figures/figure_6/variant_prioritization.R",
1165
+ "sha256": "c93746db49df6892734e6223d46ddf4db9bc91a1fa6ee491e24bf282950a4fda",
1166
+ "language": "R",
1167
+ "lines": 290,
1168
+ "truncated": false,
1169
+ "block": 4,
1170
+ "row": 954
1171
+ },
1172
+ {
1173
+ "path": "scripts/figures/supplementary/FIg_S12.R",
1174
+ "sha256": "9e3d6545aac60a65bb0e6080e0b8c95989f9c546693ecc2348c4972b4e961180",
1175
+ "language": "R",
1176
+ "lines": 68,
1177
+ "truncated": false,
1178
+ "block": 4,
1179
+ "row": 491
1180
+ },
1181
+ {
1182
+ "path": "scripts/figures/supplementary/FSM.R",
1183
+ "sha256": "671efefd1d943da8f187c03b6c110b84773b68d2b3de15d7e4ff9fcfcaa56870",
1184
+ "language": "R",
1185
+ "lines": 50,
1186
+ "truncated": false,
1187
+ "block": 4,
1188
+ "row": 352
1189
+ },
1190
+ {
1191
+ "path": "scripts/figures/supplementary/Fig_S4.py",
1192
+ "sha256": "e956605d5b8aced0e8a1f056002ef14914e0496d19b478e9ffc2019ad10e760a",
1193
+ "language": "Python",
1194
+ "lines": 232,
1195
+ "truncated": false,
1196
+ "block": 3,
1197
+ "row": 25098
1198
+ },
1199
+ {
1200
+ "path": "scripts/figures/supplementary/Fig_S6.R",
1201
+ "sha256": "8b3beb8f161c6e40b6bf0597526f8de8d68bf56323486f49ee0f757aea4ab2bf",
1202
+ "language": "R",
1203
+ "lines": 83,
1204
+ "truncated": false,
1205
+ "block": 4,
1206
+ "row": 499
1207
+ },
1208
+ {
1209
+ "path": "scripts/figures/supplementary/Fig_S7.R",
1210
+ "sha256": "05547f9871bceeb386c43e4b22569c999f4fbd95688b441f085dba6929fa0123",
1211
+ "language": "R",
1212
+ "lines": 68,
1213
+ "truncated": false,
1214
+ "block": 4,
1215
+ "row": 433
1216
+ },
1217
+ {
1218
+ "path": "scripts/figures/supplementary/ISM.R",
1219
+ "sha256": "7dee5b463a72f78d0155a640f5b2aa531b3da7fe64c996dc092f15e925038cb9",
1220
+ "language": "R",
1221
+ "lines": 61,
1222
+ "truncated": false,
1223
+ "block": 4,
1224
+ "row": 409
1225
+ },
1226
+ {
1227
+ "path": "scripts/figures/supplementary/PCA_plot.R",
1228
+ "sha256": "0145fd1a16c6be18b668087d05c96203a031de636925a08478af851b16ddc906",
1229
+ "language": "R",
1230
+ "lines": 48,
1231
+ "truncated": false,
1232
+ "block": 4,
1233
+ "row": 261
1234
+ },
1235
+ {
1236
+ "path": "scripts/figures/supplementary/PSM_score_dist.R",
1237
+ "sha256": "01aab9ae10b01434f4b913833dcc5b8b3dd7525072fafbb7745386ff848ea8ad",
1238
+ "language": "R",
1239
+ "lines": 47,
1240
+ "truncated": false,
1241
+ "block": 4,
1242
+ "row": 317
1243
+ },
1244
+ {
1245
+ "path": "scripts/figures/supplementary/Ribo-seq_exons.R",
1246
+ "sha256": "76372459dd0fc39c88af5ecd3796b5a8022cbf256b28064de838eb4c192e3f81",
1247
+ "language": "R",
1248
+ "lines": 38,
1249
+ "truncated": false,
1250
+ "block": 4,
1251
+ "row": 253
1252
+ },
1253
+ {
1254
+ "path": "scripts/figures/supplementary/fusion_sr_support.py",
1255
+ "sha256": "a38c91dcb4c5f1367d7d1ed57fa3c8f55a03a7fc2c02aad5e8f4a79cb42e406c",
1256
+ "language": "Python",
1257
+ "lines": 116,
1258
+ "truncated": false,
1259
+ "block": 3,
1260
+ "row": 22456
1261
+ },
1262
+ {
1263
+ "path": "scripts/figures/supplementary/multi_omic_validation.R",
1264
+ "sha256": "f77f6d2c5f7ebc2630b5190f7e93c5ee2e0967c7aa56d566e20c4b70364f81bc",
1265
+ "language": "R",
1266
+ "lines": 131,
1267
+ "truncated": false,
1268
+ "block": 4,
1269
+ "row": 689
1270
+ },
1271
+ {
1272
+ "path": "scripts/figures/supplementary/novel_LR_SJ_lengths.py",
1273
+ "sha256": "f151b745ec0d49529a7746ddae28b457adff4aff55dd2808bb378eb40944c43c",
1274
+ "language": "Python",
1275
+ "lines": 83,
1276
+ "truncated": false,
1277
+ "block": 3,
1278
+ "row": 20106
1279
+ },
1280
+ {
1281
+ "path": "scripts/figures/supplementary/polyA_site_data.py",
1282
+ "sha256": "58c4b11974a1cdbfec4796766f5abbbe18a4d3a0a9f33a12edf61b2d918644ab",
1283
+ "language": "Python",
1284
+ "lines": 55,
1285
+ "truncated": false,
1286
+ "block": 3,
1287
+ "row": 20383
1288
+ },
1289
+ {
1290
+ "path": "scripts/figures/supplementary/polyA_site_plotting.R",
1291
+ "sha256": "7201b1634205b70413b9cbdb8bc5200973d126ed2b8c76191332de9a3f572d9e",
1292
+ "language": "R",
1293
+ "lines": 26,
1294
+ "truncated": false,
1295
+ "block": 4,
1296
+ "row": 224
1297
+ },
1298
+ {
1299
+ "path": "scripts/figures/supplementary/refTSS_data.py",
1300
+ "sha256": "567a651ad3b4aa143ac24b030fe403141bc7d09cf4c39a408d6ac318fc3d44c2",
1301
+ "language": "Python",
1302
+ "lines": 111,
1303
+ "truncated": false,
1304
+ "block": 3,
1305
+ "row": 22529
1306
+ },
1307
+ {
1308
+ "path": "scripts/figures/supplementary/refTSS_plotting.R",
1309
+ "sha256": "bf9e09da3854e5f6fb2583e7662a6de2a98a833368dbeee7592c6dbad98c9f79",
1310
+ "language": "R",
1311
+ "lines": 27,
1312
+ "truncated": false,
1313
+ "block": 4,
1314
+ "row": 216
1315
+ },
1316
+ {
1317
+ "path": "scripts/figures/supplementary/saturation_plot.R",
1318
+ "sha256": "4b3b94a1a188a501b242d9030f59f42240bea183bbac8e4b993eca6ebe1aa4ab",
1319
+ "language": "R",
1320
+ "lines": 127,
1321
+ "truncated": false,
1322
+ "block": 4,
1323
+ "row": 609
1324
+ },
1325
+ {
1326
+ "path": "scripts/figures/supplementary/short_long_read_correlation_GENCODE.R",
1327
+ "sha256": "fff3867779548e271afa25292949446868166b5074214d0b05ddfa8a27b034e1",
1328
+ "language": "R",
1329
+ "lines": 12,
1330
+ "truncated": false,
1331
+ "block": 4,
1332
+ "row": 187
1333
+ },
1334
+ {
1335
+ "path": "scripts/figures/supplementary/short_long_read_correlation_V1.R",
1336
+ "sha256": "5db9851c39d91f57859f5f1fc43fe65c36925db79feb2d31a587301048f8a5e9",
1337
+ "language": "R",
1338
+ "lines": 93,
1339
+ "truncated": false,
1340
+ "block": 4,
1341
+ "row": 525
1342
+ },
1343
+ {
1344
+ "path": "scripts/figures/supplementary/short_long_read_correlation_V2 copy.R",
1345
+ "sha256": "f4b8302cb33945d12ccabf6e0de97536f7e6cff133eca85bae34bcd853e152e6",
1346
+ "language": "R",
1347
+ "lines": 110,
1348
+ "truncated": false,
1349
+ "block": 4,
1350
+ "row": 546
1351
+ },
1352
+ {
1353
+ "path": "scripts/figures/variant/annovar_matrix.R",
1354
+ "sha256": "b17ca8df1e701b6dc6ccef6aa7d99d55353029bfb9ae2b56dfde5e5ee7da0060",
1355
+ "language": "R",
1356
+ "lines": 95,
1357
+ "truncated": false,
1358
+ "block": 4,
1359
+ "row": 565
1360
+ },
1361
+ {
1362
+ "path": "scripts/figures/variant/phyloP_per_exon.R",
1363
+ "sha256": "f4c9842a16efa7cab621b34cbcbfdeaab1dd9a2ccffa6f99092527db5c58843b",
1364
+ "language": "R",
1365
+ "lines": 51,
1366
+ "truncated": false,
1367
+ "block": 4,
1368
+ "row": 307
1369
+ },
1370
+ {
1371
+ "path": "scripts/figures/variant/splice_site.R",
1372
+ "sha256": "667e4f35cccb6f31d91d3414f6f327e74508f802ee4856e20d95560ecb71b385",
1373
+ "language": "R",
1374
+ "lines": 35,
1375
+ "truncated": false,
1376
+ "block": 4,
1377
+ "row": 246
1378
+ },
1379
+ {
1380
+ "path": "scripts/figures/variant/splice_site_phyloP.R",
1381
+ "sha256": "72ffbcfb40eac291a26e67a9e6723d8b345343a5b312eca0dd48ca88baea612d",
1382
+ "language": "R",
1383
+ "lines": 207,
1384
+ "truncated": false,
1385
+ "block": 4,
1386
+ "row": 849
1387
+ },
1388
+ {
1389
+ "path": "scripts/format_gtf_for_RiboTIE.py",
1390
+ "sha256": "aa41168464f99e5eea3cb93b4cc98cce100201ef98948d87e6b8d5d3225f1d07",
1391
+ "language": "Python",
1392
+ "lines": 85,
1393
+ "truncated": false,
1394
+ "block": 3,
1395
+ "row": 21157
1396
+ },
1397
+ {
1398
+ "path": "scripts/full_analyzeAlternativeSplicing.R",
1399
+ "sha256": "aa83e29e14ef7213b9139206b1502e4e85d64af2072e6d3e780b166de6edebfc",
1400
+ "language": "R",
1401
+ "lines": 7,
1402
+ "truncated": false,
1403
+ "block": 4,
1404
+ "row": 174
1405
+ },
1406
+ {
1407
+ "path": "scripts/generate_STAR_scripts.sh",
1408
+ "sha256": "64b9a8eedaed778a8f4526aadf001d6aa27a825693c7a9d3869ecfc6ec0e5517",
1409
+ "language": "Shell",
1410
+ "lines": 54,
1411
+ "truncated": false,
1412
+ "block": 4,
1413
+ "row": 1879
1414
+ },
1415
+ {
1416
+ "path": "scripts/get_SingleCell_object.py",
1417
+ "sha256": "c4cc22cb06d091a3d88c730de380e2684e8c07efef11b038594da9436f9b915d",
1418
+ "language": "Python",
1419
+ "lines": 76,
1420
+ "truncated": false,
1421
+ "block": 3,
1422
+ "row": 21429
1423
+ },
1424
+ {
1425
+ "path": "scripts/get_cds.py",
1426
+ "sha256": "44544b5b1593903ed9e3aede06eb0e283c283fa467a10e5a0963c8c86709e5d6",
1427
+ "language": "Python",
1428
+ "lines": 59,
1429
+ "truncated": false,
1430
+ "block": 3,
1431
+ "row": 20363
1432
+ },
1433
+ {
1434
+ "path": "scripts/get_cds_genomekit.py",
1435
+ "sha256": "25086585ea4da4d6574123141b91682b3c1949785273405149dfcf54a80115fb",
1436
+ "language": "Python",
1437
+ "lines": 52,
1438
+ "truncated": false,
1439
+ "block": 3,
1440
+ "row": 20308
1441
+ },
1442
+ {
1443
+ "path": "scripts/get_id_to_sample.sh",
1444
+ "sha256": "d6f892101e6ed7c533d8eb93546d000afbbb14c779e2ea4e31853db955267b27",
1445
+ "language": "Shell",
1446
+ "lines": 13,
1447
+ "truncated": false,
1448
+ "block": 4,
1449
+ "row": 1530
1450
+ },
1451
+ {
1452
+ "path": "scripts/gtf_to_alignment_gff3.sh",
1453
+ "sha256": "5fa202f53eb8ad164d8a93d3010bb65deb9f4e4533a3b8134fe2a57cd0264bbe",
1454
+ "language": "Shell",
1455
+ "lines": 10,
1456
+ "truncated": false,
1457
+ "block": 4,
1458
+ "row": 1485
1459
+ },
1460
+ {
1461
+ "path": "scripts/hmmsearch.sh",
1462
+ "sha256": "06af98d8595a65181f8769cc98fb0dbf20240f3dedfc09b43b18cf99da60b802",
1463
+ "language": "Shell",
1464
+ "lines": 9,
1465
+ "truncated": false,
1466
+ "block": 4,
1467
+ "row": 1441
1468
+ },
1469
+ {
1470
+ "path": "scripts/isoformSwitchTestDEXSeq.R",
1471
+ "sha256": "08b1b9a7d21d853cc63b5c46305152cc425dc4ce33f8de92c67721326715b7ad",
1472
+ "language": "R",
1473
+ "lines": 29,
1474
+ "truncated": false,
1475
+ "block": 4,
1476
+ "row": 232
1477
+ },
1478
+ {
1479
+ "path": "scripts/long_read_filtering_and_correlations.R",
1480
+ "sha256": "4da882069c4e78ae853b52633324ce22917d68da52f79768f3e5b13c67baa41d",
1481
+ "language": "R",
1482
+ "lines": 190,
1483
+ "truncated": false,
1484
+ "block": 4,
1485
+ "row": 907
1486
+ },
1487
+ {
1488
+ "path": "scripts/modify_TransDecoder_res.py",
1489
+ "sha256": "aa72f0ccb67fb79daad6b7afec39ea638db0e14131a5033a36513a1ea4313b62",
1490
+ "language": "Python",
1491
+ "lines": 213,
1492
+ "truncated": false,
1493
+ "block": 3,
1494
+ "row": 25319
1495
+ },
1496
+ {
1497
+ "path": "scripts/novel_CDS_validated_by_RiboSeq.R",
1498
+ "sha256": "caa8eb7793e707e88278b55f878288a95040cef0bceaff3ac7f48b756b8e5f9b",
1499
+ "language": "R",
1500
+ "lines": 38,
1501
+ "truncated": false,
1502
+ "block": 4,
1503
+ "row": 281
1504
+ },
1505
+ {
1506
+ "path": "scripts/novel_CDS_validated_by_RiboSeq.py",
1507
+ "sha256": "e45df65b750123400c9b681933a4d34ce987867fe6465ef799189ee158b774bc",
1508
+ "language": "Python",
1509
+ "lines": 60,
1510
+ "truncated": false,
1511
+ "block": 3,
1512
+ "row": 20027
1513
+ },
1514
+ {
1515
+ "path": "scripts/novel_feature_gtf_for_jimmy.R",
1516
+ "sha256": "9496c28dd3db494481c9bbcd30ae9e3a2429e9aa002bc43dc82fd3367d6271b1",
1517
+ "language": "R",
1518
+ "lines": 63,
1519
+ "truncated": false,
1520
+ "block": 4,
1521
+ "row": 467
1522
+ },
1523
+ {
1524
+ "path": "scripts/novel_isoform_sr_cage_support.py",
1525
+ "sha256": "fa60c2ac36b5e5079d02ab48e4c4669d1e5fdd345240784aba104bfc9945dd45",
1526
+ "language": "Python",
1527
+ "lines": 216,
1528
+ "truncated": false,
1529
+ "block": 3,
1530
+ "row": 25043
1531
+ },
1532
+ {
1533
+ "path": "scripts/novel_peptides_for_upload.py",
1534
+ "sha256": "2bab511e5bd2040f773ca1caf6febc41ac9bb95a05ab35677fc01a59c5a5c01e",
1535
+ "language": "Python",
1536
+ "lines": 6,
1537
+ "truncated": false,
1538
+ "block": 3,
1539
+ "row": 17700
1540
+ },
1541
+ {
1542
+ "path": "scripts/peptide_abundance.R",
1543
+ "sha256": "b8ea9652641987e843a9fa40bf9c5ba515f96d0a948116da14049f0e39f17b8b",
1544
+ "language": "R",
1545
+ "lines": 27,
1546
+ "truncated": false,
1547
+ "block": 4,
1548
+ "row": 206
1549
+ },
1550
+ {
1551
+ "path": "scripts/peptide_abundance.py",
1552
+ "sha256": "84900a63f2ac6f2abda388248a2752e06eb90924af991c3656b9b1f1dcf31021",
1553
+ "language": "Python",
1554
+ "lines": 75,
1555
+ "truncated": false,
1556
+ "block": 3,
1557
+ "row": 20788
1558
+ },
1559
+ {
1560
+ "path": "scripts/peptideatlast.py",
1561
+ "sha256": "202ef14fa70aa203ca1a0c7fda661259e40b984c0c6fedc9d75f69b4bdf0c646",
1562
+ "language": "Python",
1563
+ "lines": 51,
1564
+ "truncated": false,
1565
+ "block": 3,
1566
+ "row": 19973
1567
+ },
1568
+ {
1569
+ "path": "scripts/polyA_tail/Collect_A-tail_lens_v0.3.py",
1570
+ "sha256": "7e519a60e302c1937b6b01e59ea27f77aa7f8be7563c3a99edf7ae4522508b39",
1571
+ "language": "Python",
1572
+ "lines": 109,
1573
+ "truncated": false,
1574
+ "block": 3,
1575
+ "row": 22033
1576
+ },
1577
+ {
1578
+ "path": "scripts/polyA_tail/Collect_A-tail_lens_v0.3_Nuo.py",
1579
+ "sha256": "7f9626178f674ead0aa7a72281900b03e93abd9aa40f7eca48461e1130b02590",
1580
+ "language": "Python",
1581
+ "lines": 66,
1582
+ "truncated": false,
1583
+ "block": 3,
1584
+ "row": 20489
1585
+ },
1586
+ {
1587
+ "path": "scripts/polyA_tail/collect_a_tail.py",
1588
+ "sha256": "7e519a60e302c1937b6b01e59ea27f77aa7f8be7563c3a99edf7ae4522508b39",
1589
+ "language": "Python",
1590
+ "lines": 109,
1591
+ "truncated": false,
1592
+ "block": 3,
1593
+ "row": 22033
1594
+ },
1595
+ {
1596
+ "path": "scripts/prepare_shinyApp.R",
1597
+ "sha256": "32eee119e6cd89e8f4ab06dc96f029d4a7a872bd5628cc92790d682dd70c7e45",
1598
+ "language": "R",
1599
+ "lines": 86,
1600
+ "truncated": false,
1601
+ "block": 4,
1602
+ "row": 492
1603
+ },
1604
+ {
1605
+ "path": "scripts/rename_cds_to_exon.sh",
1606
+ "sha256": "795cbdfc2107a0d5152ed5db992fd3ac9849857f5d32b272c9504f20c0643529",
1607
+ "language": "Shell",
1608
+ "lines": 5,
1609
+ "truncated": false,
1610
+ "block": 4,
1611
+ "row": 1392
1612
+ },
1613
+ {
1614
+ "path": "scripts/run_CPAT.sh",
1615
+ "sha256": "2a24803cab4d2906e7eee08e04375189096959e2a1ed5dfe7df4f90c90585354",
1616
+ "language": "Shell",
1617
+ "lines": 23,
1618
+ "truncated": false,
1619
+ "block": 4,
1620
+ "row": 1632
1621
+ },
1622
+ {
1623
+ "path": "scripts/salmon_scripts/CN_1_1_previous_tube_label_CN_1_2_S3_L001.sh",
1624
+ "sha256": "89451633fa399713f2fe64f338980e9fd99c2c547a68ed85ef49b8c5e6144c76",
1625
+ "language": "Shell",
1626
+ "lines": 8,
1627
+ "truncated": false,
1628
+ "block": 4,
1629
+ "row": 1574
1630
+ },
1631
+ {
1632
+ "path": "scripts/salmon_scripts/CN_1_2_previous_tube_label_CN_1_3_S4_L001.sh",
1633
+ "sha256": "4fe725e55035bee1d7bf4c8e0ea2c396e0fac48365dbcfdf54fd6cd261e2c567",
1634
+ "language": "Shell",
1635
+ "lines": 8,
1636
+ "truncated": false,
1637
+ "block": 4,
1638
+ "row": 1573
1639
+ },
1640
+ {
1641
+ "path": "scripts/salmon_scripts/CN_2_1_S8_L001.sh",
1642
+ "sha256": "e0f4784ba363842c15550f2a98949f5dc26914ab91b405c4889a846112527d5f",
1643
+ "language": "Shell",
1644
+ "lines": 8,
1645
+ "truncated": false,
1646
+ "block": 4,
1647
+ "row": 1466
1648
+ },
1649
+ {
1650
+ "path": "scripts/salmon_scripts/CN_2_2_S9_L001.sh",
1651
+ "sha256": "6a09dbe4cbe0a2c733db23e9482922e9d0fde02817da2d4d925a1f5c4532ea86",
1652
+ "language": "Shell",
1653
+ "lines": 8,
1654
+ "truncated": false,
1655
+ "block": 4,
1656
+ "row": 1465
1657
+ },
1658
+ {
1659
+ "path": "scripts/salmon_scripts/CN_3_1_S13_L001.sh",
1660
+ "sha256": "8e7e5c6a01f1f8c4d00c1ec10d108308fb5588a37215356f4975b19310314758",
1661
+ "language": "Shell",
1662
+ "lines": 8,
1663
+ "truncated": false,
1664
+ "block": 4,
1665
+ "row": 1477
1666
+ },
1667
+ {
1668
+ "path": "scripts/salmon_scripts/CN_3_2_S14_L001.sh",
1669
+ "sha256": "b72c670ec4170c4543bae01992cc5042b2ea7b68f8aff8b7f68a8620b6ea2a4f",
1670
+ "language": "Shell",
1671
+ "lines": 8,
1672
+ "truncated": false,
1673
+ "block": 4,
1674
+ "row": 1478
1675
+ },
1676
+ {
1677
+ "path": "scripts/salmon_scripts/NPC_1_1_resub_S15_L001.sh",
1678
+ "sha256": "202e76b3e9dd26d385e0c39d75571402c61eb71a0a55d23de7633155916abd33",
1679
+ "language": "Shell",
1680
+ "lines": 8,
1681
+ "truncated": false,
1682
+ "block": 4,
1683
+ "row": 1516
1684
+ },
1685
+ {
1686
+ "path": "scripts/salmon_scripts/NPC_1_2_previous_tube_label_NPC_1_3_S2_L001.sh",
1687
+ "sha256": "d5159c55b073562ffce9fabd46e2476ce325d3b4c43c09bda38f83c553a49905",
1688
+ "language": "Shell",
1689
+ "lines": 8,
1690
+ "truncated": false,
1691
+ "block": 4,
1692
+ "row": 1584
1693
+ },
1694
+ {
1695
+ "path": "scripts/salmon_scripts/NPC_2_1_S6_L001.sh",
1696
+ "sha256": "450c0594458d956f122c747f031dcabee65e7f0e3c1902640c176a1a73cf4d6d",
1697
+ "language": "Shell",
1698
+ "lines": 8,
1699
+ "truncated": false,
1700
+ "block": 4,
1701
+ "row": 1475
1702
+ },
1703
+ {
1704
+ "path": "scripts/salmon_scripts/NPC_2_2_S7_L001.sh",
1705
+ "sha256": "845f5b2eb915ee1720f6c34b1568d5891b3e460e1ae8738f6de2a62e91bf6ac2",
1706
+ "language": "Shell",
1707
+ "lines": 8,
1708
+ "truncated": false,
1709
+ "block": 4,
1710
+ "row": 1476
1711
+ },
1712
+ {
1713
+ "path": "scripts/salmon_scripts/NPC_3_1_S11_L001.sh",
1714
+ "sha256": "863a42e8ceee108273564fe662b6b6a64a4bda5d4d507559ba907a232ce4d884",
1715
+ "language": "Shell",
1716
+ "lines": 8,
1717
+ "truncated": false,
1718
+ "block": 4,
1719
+ "row": 1484
1720
+ },
1721
+ {
1722
+ "path": "scripts/salmon_scripts/NPC_3_2_previous_tube_label_NPC_3_3_S12_L001.sh",
1723
+ "sha256": "b55d5419bdb661a97f56dd48519d4559650356bd6c24f65488b4c97d056730f4",
1724
+ "language": "Shell",
1725
+ "lines": 8,
1726
+ "truncated": false,
1727
+ "block": 4,
1728
+ "row": 1587
1729
+ },
1730
+ {
1731
+ "path": "scripts/salmon_scripts/iPSC_1_S1_L001.sh",
1732
+ "sha256": "fa04947be70fefaf7f022e6e400acf9590fa55f9c78ac8a149a8aa894727691a",
1733
+ "language": "Shell",
1734
+ "lines": 8,
1735
+ "truncated": false,
1736
+ "block": 4,
1737
+ "row": 1467
1738
+ },
1739
+ {
1740
+ "path": "scripts/salmon_scripts/iPSC_2_S5_L001.sh",
1741
+ "sha256": "1b8f37e24536934f86d50090edb78f733ed300081ef0160d4ba46c1c0a909a23",
1742
+ "language": "Shell",
1743
+ "lines": 8,
1744
+ "truncated": false,
1745
+ "block": 4,
1746
+ "row": 1463
1747
+ },
1748
+ {
1749
+ "path": "scripts/salmon_scripts/iPSC_3_S10_L001.sh",
1750
+ "sha256": "129782613daf3dd2c3f8bd7c7d7e80c3912e3c37746d8a4d56336bfde8b31f54",
1751
+ "language": "Shell",
1752
+ "lines": 8,
1753
+ "truncated": false,
1754
+ "block": 4,
1755
+ "row": 1474
1756
+ },
1757
+ {
1758
+ "path": "scripts/splice_sites_annotation.py",
1759
+ "sha256": "0896c059fed1e8f45c359204f46aa4a10eb4c8cec9c418ac15a19bbf0fe3df7f",
1760
+ "language": "Python",
1761
+ "lines": 218,
1762
+ "truncated": false,
1763
+ "block": 3,
1764
+ "row": 24965
1765
+ },
1766
+ {
1767
+ "path": "scripts/split_fasta.sh",
1768
+ "sha256": "27e6206a6134d3e7fd4c1941b3056566e93ff6c9b3919adfee442f03c7287c90",
1769
+ "language": "Shell",
1770
+ "lines": 48,
1771
+ "truncated": false,
1772
+ "block": 4,
1773
+ "row": 1764
1774
+ },
1775
+ {
1776
+ "path": "scripts/stringtie.sh",
1777
+ "sha256": "1062e01a1d626913c557dc7bf6bf57d24cab9cefde402f2ac9d5a478f5d99390",
1778
+ "language": "Shell",
1779
+ "lines": 5,
1780
+ "truncated": false,
1781
+ "block": 4,
1782
+ "row": 1623
1783
+ },
1784
+ {
1785
+ "path": "scripts/submit_blastp.sh",
1786
+ "sha256": "e3cf723a1dcafbecf86ddfee2ea4bb3b66fb3242a09d311dd0200f3fe0501844",
1787
+ "language": "Shell",
1788
+ "lines": 9,
1789
+ "truncated": false,
1790
+ "block": 4,
1791
+ "row": 1513
1792
+ },
1793
+ {
1794
+ "path": "scripts/submit_come_2.sh",
1795
+ "sha256": "7f3441a74f3b6d379edacb83676a0f3795c3b41197eee2b3308f4008b0b17966",
1796
+ "language": "Shell",
1797
+ "lines": 8,
1798
+ "truncated": false,
1799
+ "block": 4,
1800
+ "row": 1351
1801
+ },
1802
+ {
1803
+ "path": "scripts/submit_comet_PacBio_search_db.sh",
1804
+ "sha256": "b1cef916c1d9ef05d1724b86a91c4b8798f47dfa40a5c131b68e3db8c7dc2f59",
1805
+ "language": "Shell",
1806
+ "lines": 8,
1807
+ "truncated": false,
1808
+ "block": 4,
1809
+ "row": 1378
1810
+ },
1811
+ {
1812
+ "path": "scripts/submit_generateDecoyTranscriptome.sh",
1813
+ "sha256": "6b4a99d25b03a5c43245bee77e133a7e97d90b6b644b54c7f7e5c7aa37997c7a",
1814
+ "language": "Shell",
1815
+ "lines": 14,
1816
+ "truncated": false,
1817
+ "block": 4,
1818
+ "row": 1491
1819
+ },
1820
+ {
1821
+ "path": "scripts/submit_getSingleCellObject.sh",
1822
+ "sha256": "9ee425ce908bdc7e5e92240e54b6ab9028e6a4600aa4a78efc09783f068bcb0d",
1823
+ "language": "Shell",
1824
+ "lines": 12,
1825
+ "truncated": false,
1826
+ "block": 4,
1827
+ "row": 1450
1828
+ },
1829
+ {
1830
+ "path": "scripts/submit_get_cds.sh",
1831
+ "sha256": "7d85dacda5937f9d36f3b6809d438eb542ac52ecc80d5636d7f523c225453e49",
1832
+ "language": "Shell",
1833
+ "lines": 9,
1834
+ "truncated": false,
1835
+ "block": 4,
1836
+ "row": 1340
1837
+ },
1838
+ {
1839
+ "path": "scripts/submit_hmmsearch_predict.sh",
1840
+ "sha256": "109da1975f4131802924f49433892f5b7989f6dc116a3f4b1cfc3dac440bf31f",
1841
+ "language": "Shell",
1842
+ "lines": 10,
1843
+ "truncated": false,
1844
+ "block": 4,
1845
+ "row": 1611
1846
+ },
1847
+ {
1848
+ "path": "scripts/submit_percolator.sh",
1849
+ "sha256": "ed460904dd347e65b3717d9704e5ab2062bf508224d7234f9080a0adf8f6a7aa",
1850
+ "language": "Shell",
1851
+ "lines": 23,
1852
+ "truncated": false,
1853
+ "block": 4,
1854
+ "row": 1636
1855
+ },
1856
+ {
1857
+ "path": "scripts/submit_percolator_2.sh",
1858
+ "sha256": "f4d1c4c12137943f02dc2ab581ec78480c36e86f5f89e54b2183734b47227b62",
1859
+ "language": "Shell",
1860
+ "lines": 23,
1861
+ "truncated": false,
1862
+ "block": 4,
1863
+ "row": 1638
1864
+ },
1865
+ {
1866
+ "path": "scripts/submit_salmon.sh",
1867
+ "sha256": "a27b653f1a630c6064486b56a6d79ab1a5f27eeded863a1de5c2f37ba24bab20",
1868
+ "language": "Shell",
1869
+ "lines": 9,
1870
+ "truncated": false,
1871
+ "block": 4,
1872
+ "row": 1338
1873
+ },
1874
+ {
1875
+ "path": "scripts/submit_salmon_index.sh",
1876
+ "sha256": "8afe84539e0bdcfae92e8c03aab40daa40e6053d61f7c8652df0853cbe14339e",
1877
+ "language": "Shell",
1878
+ "lines": 9,
1879
+ "truncated": false,
1880
+ "block": 4,
1881
+ "row": 1374
1882
+ },
1883
+ {
1884
+ "path": "scripts/submit_salmon_quant.sh",
1885
+ "sha256": "1bf01cd1c7a92da1374df83f975bb94ce95a0f78f974ab34d44e4c766332bb56",
1886
+ "language": "Shell",
1887
+ "lines": 9,
1888
+ "truncated": false,
1889
+ "block": 4,
1890
+ "row": 1532
1891
+ },
1892
+ {
1893
+ "path": "scripts/submit_sqanti3_qc.sh",
1894
+ "sha256": "64551d17d2e048a30de0a639257ed2e85455a58a8ceaa52887239eb2cdfac984",
1895
+ "language": "Shell",
1896
+ "lines": 15,
1897
+ "truncated": false,
1898
+ "block": 4,
1899
+ "row": 1637
1900
+ },
1901
+ {
1902
+ "path": "scripts/tables/table_s6.R",
1903
+ "sha256": "db8e932bb222a70cb395b93e7358ddbb6cfcd4095c880b88cca4d3ba3596e781",
1904
+ "language": "R",
1905
+ "lines": 8,
1906
+ "truncated": false,
1907
+ "block": 4,
1908
+ "row": 170
1909
+ },
1910
+ {
1911
+ "path": "scripts/test_parse_transcriptome.py",
1912
+ "sha256": "15d13418b0ede38ed80ba91f62d635c2ddf0cf22039eb6de19b7b0287693cb8b",
1913
+ "language": "Python",
1914
+ "lines": 22,
1915
+ "truncated": false,
1916
+ "block": 3,
1917
+ "row": 18581
1918
+ },
1919
+ {
1920
+ "path": "scripts/transdecoder_LongOrfs.sh",
1921
+ "sha256": "65c34aab8ab9daf5dde189ec1ca37b84005f5d22c95102aafaa9f7013f8895f5",
1922
+ "language": "Shell",
1923
+ "lines": 9,
1924
+ "truncated": false,
1925
+ "block": 4,
1926
+ "row": 1423
1927
+ },
1928
+ {
1929
+ "path": "scripts/transdecoder_predict.sh",
1930
+ "sha256": "5f7cf1a6dac3b86bb521243d4ae97aaee4208b4f4d64852d701ae2ac0c7c18ef",
1931
+ "language": "Shell",
1932
+ "lines": 9,
1933
+ "truncated": false,
1934
+ "block": 4,
1935
+ "row": 1492
1936
+ },
1937
+ {
1938
+ "path": "scripts/variant/annovar.sh",
1939
+ "sha256": "89b0bad1259e8b27c0eb53e7744e107f9f321448ea4053757fbb6fef80418eb5",
1940
+ "language": "Shell",
1941
+ "lines": 67,
1942
+ "truncated": false,
1943
+ "block": 4,
1944
+ "row": 1976
1945
+ },
1946
+ {
1947
+ "path": "scripts/variant/get_novel_exonic_regions.R",
1948
+ "sha256": "ad2484fca4316cdc9c0ab1bf95d85337ddfed4bff5aaeeb35a297e44c370501c",
1949
+ "language": "R",
1950
+ "lines": 18,
1951
+ "truncated": false,
1952
+ "block": 4,
1953
+ "row": 199
1954
+ },
1955
+ {
1956
+ "path": "scripts/variant/get_novel_splice_sites.py",
1957
+ "sha256": "7b2cf99677d568fc04509b69d3d92232d56cb985ccedf96d6211e7c71b59202a",
1958
+ "language": "Python",
1959
+ "lines": 79,
1960
+ "truncated": false,
1961
+ "block": 3,
1962
+ "row": 21747
1963
+ },
1964
+ {
1965
+ "path": "scripts/variant/intersect_novel_exonic_regions_with_ClinVar.R",
1966
+ "sha256": "1c93c0dc48dfb70b1d2698894188bdf0c77460ad54d7569c7cde23fc7e443463",
1967
+ "language": "R",
1968
+ "lines": 33,
1969
+ "truncated": false,
1970
+ "block": 4,
1971
+ "row": 260
1972
+ },
1973
+ {
1974
+ "path": "scripts/variant/intersect_splice_sites_with_ClinVar.R",
1975
+ "sha256": "bbd06840cb072f60730a03db11a06be5884bdfdb1ad249f55b0716aa27dcc846",
1976
+ "language": "R",
1977
+ "lines": 29,
1978
+ "truncated": false,
1979
+ "block": 4,
1980
+ "row": 291
1981
+ },
1982
+ {
1983
+ "path": "scripts/variant/splice_site_phyloP.py",
1984
+ "sha256": "0296ad1a87cc9d4fa4f49df16cf79f3f88a84351e43d1cb906d00f4536125684",
1985
+ "language": "Python",
1986
+ "lines": 218,
1987
+ "truncated": false,
1988
+ "block": 3,
1989
+ "row": 24756
1990
+ },
1991
+ {
1992
+ "path": "scripts/variant/trost_2022.R",
1993
+ "sha256": "70239ed4e194c6ee6647f5f3ba64389832440018ebca5090b032a90fb01eb752",
1994
+ "language": "R",
1995
+ "lines": 104,
1996
+ "truncated": false,
1997
+ "block": 4,
1998
+ "row": 485
1999
+ },
2000
+ {
2001
+ "path": "scripts/visualiza_bam.py",
2002
+ "sha256": "63a68e662439a65223d5b0946007e5a80ad0380b28e19d87e52fa3b9c3387c6b",
2003
+ "language": "Python",
2004
+ "lines": 37,
2005
+ "truncated": false,
2006
+ "block": 3,
2007
+ "row": 19467
2008
+ },
2009
+ {
2010
+ "path": "scripts_for_Nuo/making_figures/Figures.R",
2011
+ "sha256": "e296a0d1ddf745996ff9448f24bd107dff194652e4a8306bf53fd1cc8565e6a3",
2012
+ "language": "R",
2013
+ "lines": 3306,
2014
+ "truncated": false,
2015
+ "block": 4,
2016
+ "row": 1241
2017
+ },
2018
+ {
2019
+ "path": "scripts_for_Nuo/making_figures/Functions.R",
2020
+ "sha256": "46afb0cddc5671543d66ffae78311b169c2b6481fcc00e0e5d63541c11f6d2c5",
2021
+ "language": "R",
2022
+ "lines": 3004,
2023
+ "truncated": false,
2024
+ "block": 4,
2025
+ "row": 1234
2026
+ },
2027
+ {
2028
+ "path": "scripts_for_Nuo/making_figures/ago_plotting.R",
2029
+ "sha256": "01519184727d3b8a83ed486bdf33a5ad1a2b3666e091e86047c50a92eb7a4670",
2030
+ "language": "R",
2031
+ "lines": 1794,
2032
+ "truncated": false,
2033
+ "block": 4,
2034
+ "row": 1223
2035
+ },
2036
+ {
2037
+ "path": "setup.py",
2038
+ "sha256": "d13fbfaa2902484b4c6fc87e959ae69a1314a3917eb9d81ec455ffecbd0f7051",
2039
+ "language": "Python",
2040
+ "lines": 6,
2041
+ "truncated": false,
2042
+ "block": 3,
2043
+ "row": 17525
2044
+ },
2045
+ {
2046
+ "path": "subworkflows/local/ORFanage/bin/get_best_orf.py",
2047
+ "sha256": "9d49b7703c7ac6b542284aed66eee2765523a03fbfc44dbd7c2fe7fbd8705611",
2048
+ "language": "Python",
2049
+ "lines": 109,
2050
+ "truncated": false,
2051
+ "block": 3,
2052
+ "row": 21903
2053
+ },
2054
+ {
2055
+ "path": "subworkflows/local/classify_and_count/bin/filter_by_exp_ext.py",
2056
+ "sha256": "8d7ba6fcd2d4b4202fc5289236d0fe560d9a837f31104736c6e1b68efd7cc796",
2057
+ "language": "Python",
2058
+ "lines": 181,
2059
+ "truncated": false,
2060
+ "block": 3,
2061
+ "row": 24120
2062
+ },
2063
+ {
2064
+ "path": "subworkflows/local/classify_and_count/bin/get_full_expression.py",
2065
+ "sha256": "75f383c8f7d9cb6bc1ac391602ee2cc1093300be3e188480033309b5e5bc43d9",
2066
+ "language": "Python",
2067
+ "lines": 49,
2068
+ "truncated": false,
2069
+ "block": 3,
2070
+ "row": 20240
2071
+ },
2072
+ {
2073
+ "path": "subworkflows/local/peptide/bin/get_novel_peptides.R",
2074
+ "sha256": "580e46e1923d2278d2a51e6c69195b3001fb381e4a0966a77fc64f89f627a8de",
2075
+ "language": "R",
2076
+ "lines": 78,
2077
+ "truncated": false,
2078
+ "block": 4,
2079
+ "row": 453
2080
+ },
2081
+ {
2082
+ "path": "subworkflows/local/peptide/bin/make_peptide_gtf_file.py",
2083
+ "sha256": "189caca6203da1aa94ea55f0782f5a838bc626f27de281a40aa025a002e0ab4c",
2084
+ "language": "Python",
2085
+ "lines": 216,
2086
+ "truncated": false,
2087
+ "block": 3,
2088
+ "row": 25185
2089
+ },
2090
+ {
2091
+ "path": "subworkflows/local/peptide/bin/peptide_mapping.R",
2092
+ "sha256": "2731812009a0c0b850b4726aef6084957848833a3d28137e826a3bfadd914ee4",
2093
+ "language": "R",
2094
+ "lines": 93,
2095
+ "truncated": false,
2096
+ "block": 4,
2097
+ "row": 533
2098
+ },
2099
+ {
2100
+ "path": "subworkflows/local/proteoform_classification/bin/1_get_gc_exon_and_5utr_info.py",
2101
+ "sha256": "79399b3b16cd0b711497bea3e2a5825159b899343b06809ca0f7840a24d5dba8",
2102
+ "language": "Python",
2103
+ "lines": 89,
2104
+ "truncated": false,
2105
+ "block": 3,
2106
+ "row": 21804
2107
+ },
2108
+ {
2109
+ "path": "subworkflows/local/proteoform_classification/bin/2_classify_5utr_status.py",
2110
+ "sha256": "f80e1ce047343dcc436489b0405b46d38109308287a99bb8489871f5953015f6",
2111
+ "language": "Python",
2112
+ "lines": 229,
2113
+ "truncated": false,
2114
+ "block": 3,
2115
+ "row": 24688
2116
+ },
2117
+ {
2118
+ "path": "subworkflows/local/proteoform_classification/bin/3_merge_5utr_info_to_pclass_table.py",
2119
+ "sha256": "691b0dada76adb4590e0affd9b71e6818fdac7fd3b2a853e0ac86d1e56cfe16c",
2120
+ "language": "Python",
2121
+ "lines": 23,
2122
+ "truncated": false,
2123
+ "block": 3,
2124
+ "row": 18731
2125
+ },
2126
+ {
2127
+ "path": "subworkflows/local/proteoform_classification/bin/make_protein_search_database.py",
2128
+ "sha256": "54031ba80260ba1132ded1c492c6a29c9a2c4468d4eacc0ae6631f5406a4369e",
2129
+ "language": "Python",
2130
+ "lines": 63,
2131
+ "truncated": false,
2132
+ "block": 3,
2133
+ "row": 20967
2134
+ },
2135
+ {
2136
+ "path": "subworkflows/local/proteoform_classification/bin/protein_classification.py",
2137
+ "sha256": "bb4dcebe89ea2972b63afeeb57829edbe2212be9dfee444d261569e5435c226d",
2138
+ "language": "Python",
2139
+ "lines": 175,
2140
+ "truncated": false,
2141
+ "block": 3,
2142
+ "row": 24664
2143
+ },
2144
+ {
2145
+ "path": "subworkflows/local/proteoform_classification/bin/rename_cds_to_exon.py",
2146
+ "sha256": "448b784a30e1bb2b2201baa9fda9fe7b0d415301f2a1f8bef36df4fce8ad1c5d",
2147
+ "language": "Python",
2148
+ "lines": 148,
2149
+ "truncated": false,
2150
+ "block": 3,
2151
+ "row": 23424
2152
+ },
2153
+ {
2154
+ "path": "subworkflows/local/proteoform_classification/bin/utils.py",
2155
+ "sha256": "e9050bcbe794084857e0abcdc925b78d6f321b2bc47e54edd46852fb963fa8af",
2156
+ "language": "Python",
2157
+ "lines": 200,
2158
+ "truncated": false,
2159
+ "block": 3,
2160
+ "row": 24774
2161
+ },
2162
+ {
2163
+ "path": "subworkflows/local/variant_analysis/bin/riboseq_track.R",
2164
+ "sha256": "c3132a8698b1c4f436232e8396f5bdb26d712ba09d926398d1d0a598af5d6206",
2165
+ "language": "R",
2166
+ "lines": 38,
2167
+ "truncated": false,
2168
+ "block": 4,
2169
+ "row": 242
2170
+ },
2171
+ {
2172
+ "path": "transcript_vis_app/app.R",
2173
+ "sha256": "47c27598b70584991137223b2ac537c364adab34dd8bbf8e19de3d0538ba07c8",
2174
+ "language": "R",
2175
+ "lines": 186,
2176
+ "truncated": false,
2177
+ "block": 4,
2178
+ "row": 706
2179
+ }
2180
+ ]
2181
+ }
manifests/13/zenodo__20605863.json ADDED
@@ -0,0 +1,210 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "format": "oscr-script-manifest/1",
3
+ "repository": "zenodo:20605863",
4
+ "url": "10.5281/zenodo.20605863",
5
+ "host": "zenodo.org",
6
+ "commit": "",
7
+ "license": "MIT",
8
+ "license_confirmed_by": "license file LICENSE",
9
+ "redistribution": "yes",
10
+ "files": [
11
+ {
12
+ "path": "LICENSE",
13
+ "sha256": "600b7b5b9d792d42fc68018fc1b40327c16095c53e5998382640e7d7f7f984dd",
14
+ "language": "License",
15
+ "lines": 21,
16
+ "truncated": false,
17
+ "block": 3,
18
+ "row": 8057
19
+ },
20
+ {
21
+ "path": "README.md",
22
+ "sha256": "84b07f0fc30ec6c123ab554356b4f955376be11e254d4fdeaef23475cf4a51e4",
23
+ "language": "Text",
24
+ "lines": 75,
25
+ "truncated": false,
26
+ "block": 4,
27
+ "row": 2574
28
+ },
29
+ {
30
+ "path": "code\\app.py",
31
+ "sha256": "a6c5e2eac2d17c62a9826d6502a9043d45e897e7023c18f764d1ccdd8429eff6",
32
+ "language": "Python",
33
+ "lines": 3148,
34
+ "truncated": false,
35
+ "block": 4,
36
+ "row": 106
37
+ },
38
+ {
39
+ "path": "code\\batch_multislice_extraction_lbm.py",
40
+ "sha256": "b8edbd696adad3af161027c03d368f562ddcb6900ea89e2b5cd1a5b533a37cd8",
41
+ "language": "Python",
42
+ "lines": 907,
43
+ "truncated": false,
44
+ "block": 3,
45
+ "row": 27823
46
+ },
47
+ {
48
+ "path": "code\\dynamic_stripping_sim.py",
49
+ "sha256": "3584d88006c33b8849d7daa42c60f8459c5ba2a7be1fce47bd7e772c474e7a4f",
50
+ "language": "Python",
51
+ "lines": 847,
52
+ "truncated": false,
53
+ "block": 3,
54
+ "row": 27669
55
+ },
56
+ {
57
+ "path": "code\\generate_figure12_standalone.py",
58
+ "sha256": "5b4d8c692c2c429c5f30363198514618cc05f8ef86afd9a08328bfc4bf569785",
59
+ "language": "Python",
60
+ "lines": 463,
61
+ "truncated": false,
62
+ "block": 3,
63
+ "row": 27143
64
+ },
65
+ {
66
+ "path": "code\\knudsen_calculator_app.py",
67
+ "sha256": "0143452138bf2cf2bc6f6c69f2f462d00af4f12df78226bd76249965aa9fd419",
68
+ "language": "Python",
69
+ "lines": 327,
70
+ "truncated": false,
71
+ "block": 3,
72
+ "row": 25928
73
+ },
74
+ {
75
+ "path": "code\\lbm_extraction_coefficient_validation.py",
76
+ "sha256": "1dba47bb9033dc97561a74fbeaffba9a622fa2056375f46780e2b2420ff647bd",
77
+ "language": "Python",
78
+ "lines": 1011,
79
+ "truncated": false,
80
+ "block": 3,
81
+ "row": 27997
82
+ },
83
+ {
84
+ "path": "code\\parameter_sensitivity_analysis.py",
85
+ "sha256": "76f08f4cb70f3680355ff161dcdacf8401e020ae15126671b36308e0cabfa2b4",
86
+ "language": "Python",
87
+ "lines": 974,
88
+ "truncated": false,
89
+ "block": 3,
90
+ "row": 27868
91
+ },
92
+ {
93
+ "path": "code\\phreeqc_simulator.py",
94
+ "sha256": "d3fc436d5f5649026874e3e0a1d01876843c5c08f36e9ece260635ef760bf10a",
95
+ "language": "Python",
96
+ "lines": 1437,
97
+ "truncated": false,
98
+ "block": 3,
99
+ "row": 27974
100
+ },
101
+ {
102
+ "path": "code\\plot_stripping_box_model_figures.py",
103
+ "sha256": "a3c7839e9608be07c0d60414b95569b3fc93234e2ccb584e5d0d8794a035c726",
104
+ "language": "Python",
105
+ "lines": 280,
106
+ "truncated": false,
107
+ "block": 3,
108
+ "row": 26239
109
+ },
110
+ {
111
+ "path": "code\\slip_correction_applicability_diagnostic.py",
112
+ "sha256": "676de784196213c4d7b8298fa93fca89485c2f00a47642156841a49d2f046a84",
113
+ "language": "Python",
114
+ "lines": 515,
115
+ "truncated": false,
116
+ "block": 3,
117
+ "row": 27285
118
+ },
119
+ {
120
+ "path": "code\\taichi_extraction_lbm.py",
121
+ "sha256": "c16a53a044e611459a189ca62f90475962f7e507f176ecbb7ad04c27614e7e39",
122
+ "language": "Python",
123
+ "lines": 767,
124
+ "truncated": false,
125
+ "block": 3,
126
+ "row": 27659
127
+ },
128
+ {
129
+ "path": "code\\tests\\test_batch_multislice_extraction_lbm.py",
130
+ "sha256": "b67d714f9ad933114827bda8bb36e48b1740802212fab848307ee4f49ba0d6a6",
131
+ "language": "Python",
132
+ "lines": 84,
133
+ "truncated": false,
134
+ "block": 3,
135
+ "row": 20874
136
+ },
137
+ {
138
+ "path": "code\\tests\\test_parameter_sensitivity_analysis.py",
139
+ "sha256": "ac133b20eca13cdb56550cba2d7c20da60d3b8636886e745fbd044cf123e789d",
140
+ "language": "Python",
141
+ "lines": 222,
142
+ "truncated": false,
143
+ "block": 3,
144
+ "row": 24890
145
+ },
146
+ {
147
+ "path": "code\\tests\\test_slip_correction_applicability_diagnostic.py",
148
+ "sha256": "49f3c5893a834704d9c00df7f2462ca86656a3d92a03a21f3769a990b573855d",
149
+ "language": "Python",
150
+ "lines": 85,
151
+ "truncated": false,
152
+ "block": 3,
153
+ "row": 21317
154
+ },
155
+ {
156
+ "path": "code\\tests\\test_thermodynamic_consistency_diagnostic.py",
157
+ "sha256": "9d7281d6753c89f7b0a20b49b1b3b05983c7299856370f1a499a3c8f5093b9a4",
158
+ "language": "Python",
159
+ "lines": 125,
160
+ "truncated": false,
161
+ "block": 3,
162
+ "row": 23283
163
+ },
164
+ {
165
+ "path": "code\\tests\\test_ui_multislice_extraction_lbm.py",
166
+ "sha256": "613da64674ec1b5cc46e5b8bb67e7221be1ad5657df808c9421df63a91e5d097",
167
+ "language": "Python",
168
+ "lines": 223,
169
+ "truncated": false,
170
+ "block": 3,
171
+ "row": 24066
172
+ },
173
+ {
174
+ "path": "code\\tests\\test_validate_cnn_reconstruction_benchmark.py",
175
+ "sha256": "84c2f95e8838a4d835e306da64713ee3daa0a5dfbce72e729215f53e4e228b46",
176
+ "language": "Python",
177
+ "lines": 126,
178
+ "truncated": false,
179
+ "block": 3,
180
+ "row": 22842
181
+ },
182
+ {
183
+ "path": "code\\thermodynamic_consistency_diagnostic.py",
184
+ "sha256": "d4295ea09d49b3f8e52d2df5a0247425643c2f478393e673fcb81c59896bc065",
185
+ "language": "Python",
186
+ "lines": 991,
187
+ "truncated": false,
188
+ "block": 3,
189
+ "row": 27926
190
+ },
191
+ {
192
+ "path": "code\\ui_multislice_extraction_lbm.py",
193
+ "sha256": "6c43052ad95ef02846dfec9a34513b910baf17ca1fd577b23c68e1e2daa66ebc",
194
+ "language": "Python",
195
+ "lines": 1955,
196
+ "truncated": false,
197
+ "block": 4,
198
+ "row": 78
199
+ },
200
+ {
201
+ "path": "code\\validate_cnn_reconstruction_benchmark.py",
202
+ "sha256": "7f77286d510ac4d7e7f34cdd16f9450949496e76e03763c647a243c55d7b4741",
203
+ "language": "Python",
204
+ "lines": 1190,
205
+ "truncated": false,
206
+ "block": 3,
207
+ "row": 27973
208
+ }
209
+ ]
210
+ }