diff --git "a/manifests/a8/github.com__animesh__scripts.json" "b/manifests/a8/github.com__animesh__scripts.json" new file mode 100644--- /dev/null +++ "b/manifests/a8/github.com__animesh__scripts.json" @@ -0,0 +1,10317 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/animesh/scripts", + "url": "https://raw.githubusercontent.com/animesh/scripts/ccc63e663e0cd905a4325327292ae8f15c1d5885/geneGroupsQC.r", + "host": "github.com", + "commit": "45f16b9f8493f70d9026045817d91f44bd616a71", + "license": "GPL-2.0", + "license_confirmed_by": "license file copyright.pl", + "redistribution": "yes", + "files": [ + { + "path": "AnIPlay.java", + "sha256": "23fc5e01ff4e422938e717e205ee139e15d78771f706ed88f9f2fd222ad0ebd5", + "language": "Java", + "lines": 119, + "truncated": false, + "block": 1, + "row": 500 + }, + { + "path": "GSEA.r", + "sha256": "383b0e538fafcb4b5625350604daf9bbaf4915fa2e528728a7e2234229c58029", + "language": "R", + "lines": 38, + "truncated": false, + "block": 1, + "row": 10033 + }, + { + "path": "README.md", + "sha256": "6f143032a251758ecca4ecbe2489674f1d640394c9e3390f12bb19c1f7aa7ee6", + "language": "Text", + "lines": 43, + "truncated": false, + "block": 1, + "row": 11809 + }, + { + "path": "RawReadMZMS1.jl", + "sha256": "27a50c738ebf4a342cb0536efa061a805b08f920aeedac054d88f40598ba03cf", + "language": "Julia", + "lines": 39, + "truncated": false, + "block": 1, + "row": 1578 + }, + { + "path": "RawReadMZMS1.py", + "sha256": "68b4989b785483cd73ef426312a83eddef55c5301ad48a138f5435a2d5f8840b", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 1, + "row": 6376 + }, + { + "path": "RawReadMZMS1.rmd", + "sha256": "5cbc48871014ea2e9472b8b20598024e8b6ba5e4fa8530738fb0841d4029bba6", + "language": "R", + "lines": 540, + "truncated": false, + "block": 1, + "row": 10557 + }, + { + "path": "SiBigDataWS.r", + "sha256": "232e83c5e72e41e4e0d77c3e34acb8a76022aa7e15dd4e29a4e1a7553892cc43", + "language": "R", + "lines": 42, + "truncated": false, + "block": 1, + "row": 10012 + }, + { + "path": "aIdol.jl", + "sha256": "679dafde90444548b7ec19ac6415ea21e824661e4e3103ec218859b4b3b20fea", + "language": "Julia", + "lines": 38, + "truncated": false, + "block": 1, + "row": 1580 + }, + { + "path": "abundance.m", + "sha256": "542caba7fa22a53d4c07abcc69d445614e0e2e3629151610a8ca0c09e2e22347", + "language": "MATLAB", + "lines": 74, + "truncated": false, + "block": 1, + "row": 3135 + }, + { + "path": "addlic.pl", + "sha256": "b82509c2909412dceb92100fb133f8739ceb628231fbb596df32fa345a5b9748", + "language": "Perl", + "lines": 25, + "truncated": false, + "block": 1, + "row": 4530 + }, + { + "path": "aicda.m", + "sha256": "30089284364742afa64824ee5aa7a2faa52297b53a5eb2bbcd8777e51ad63f8e", + "language": "MATLAB", + "lines": 90, + "truncated": false, + "block": 1, + "row": 3305 + }, + { + "path": "aidintactcomp.m", + "sha256": "a1f5a1e806567b08afa8695a166526344e01f7b2f41877ff49bccbc6d012297f", + "language": "MATLAB", + "lines": 91, + "truncated": false, + "block": 1, + "row": 3304 + }, + { + "path": "align.pl", + "sha256": "5fcb5f6f02acd3cec8c59874d0755bb8a137636acc800f49ff9638edb6166f17", + "language": "Perl", + "lines": 270, + "truncated": false, + "block": 1, + "row": 4938 + }, + { + "path": "aligncont.pl", + "sha256": "f7ffe18970ad47e84ca240651d7d288faa4119919dc817b57d080c9017ce59d2", + "language": "Perl", + "lines": 270, + "truncated": false, + "block": 1, + "row": 4936 + }, + { + "path": "aln2csv.pl", + "sha256": "ad35ca3c237fd2a5b9c4e172460b9a1de342b2ff108a749308531ba54a38b3e1", + "language": "Perl", + "lines": 100, + "truncated": false, + "block": 1, + "row": 4724 + }, + { + "path": "aln2hydro.pl", + "sha256": "b44d0d3012ce2c130b0f26c530ad2f16ce34be9135d185be5352d3df58805163", + "language": "Perl", + "lines": 115, + "truncated": false, + "block": 1, + "row": 4797 + }, + { + "path": "alphaFoldSetup.sh", + "sha256": "5fc7e9719f89df2355d0fd31696b4a28eed5a4c62dfaed1c43a9cda07afa4230", + "language": "Shell", + "lines": 34, + "truncated": false, + "block": 1, + "row": 11693 + }, + { + "path": "analyotp1.pl", + "sha256": "15fce763955f9d816d702530d69709562d613298c620c59437b74a1cf7bc2787", + "language": "Perl", + "lines": 106, + "truncated": false, + "block": 1, + "row": 4806 + }, + { + "path": "anamolyDetect.py", + "sha256": "1285d422040c453b60650b6d459cc1116122a7163d4d34c044631d979e05429d", + "language": "Python", + "lines": 423, + "truncated": false, + "block": 1, + "row": 9336 + }, + { + "path": "angle_dist_nc.m", + "sha256": "83b0058fa86a635faaf2f0d653327b702c18be470b409f06aabfbb74d1a5d9e1", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 1, + "row": 2376 + }, + { + "path": "animain.pl", + "sha256": "e7324d3537fd7f67067039a5ca3130a5afcd400e45519575adda0f8af7f84c4f", + "language": "Perl", + "lines": 208, + "truncated": false, + "block": 1, + "row": 4912 + }, + { + "path": "ann.pl", + "sha256": "ffef48c3066cf5b78a2a7af18d81a9351e4a87f2cd87aaab33209170f9f87188", + "language": "Perl", + "lines": 332, + "truncated": false, + "block": 1, + "row": 4933 + }, + { + "path": "ann_jax.py", + "sha256": "ebd4014fb31c28ede31f768ab173cd99476adb64290b71cd6d976a0ceb026db3", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 1, + "row": 7289 + }, + { + "path": "ann_numpy.py", + "sha256": "f680b45a095a2da3c86ed5c688af13f0d49e723ab39a735ce9dc6bc14d1dab44", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 1, + "row": 5616 + }, + { + "path": "ann_pycaret.py", + "sha256": "adee2f5c829b1cadefac807ac1ceb243cb19649a2ce23ab301d0ad27e0731697", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5422 + }, + { + "path": "ann_sl.py", + "sha256": "3fff008ef5bfbe4861f830af8f62a222562fce6be7461035b11af6d6f767d7ff", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 1, + "row": 5744 + }, + { + "path": "ann_tf.py", + "sha256": "4db2f06a954efeb51e4364e70096224a661234a456c75b60d6ad4405b8863735", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 1, + "row": 7090 + }, + { + "path": "ann_tfp.py", + "sha256": "9bc94838d4316e638f2a4c22fbf06b8ea67fa1aae18bab75280d756f7ef7e639", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 1, + "row": 6933 + }, + { + "path": "ann_torch.py", + "sha256": "baa148f30abbe0c161fae2b8c7f66dcaed82008e3826b0eba407baf335cb27c6", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 1, + "row": 7596 + }, + { + "path": "any2any.pl", + "sha256": "0a433f1552374442cb5aad43f4193f4e6d5cbc1527e1f84370efd38d65bbdd2b", + "language": "Perl", + "lines": 16, + "truncated": false, + "block": 1, + "row": 4454 + }, + { + "path": "areacomp.pl", + "sha256": "7cfe6675b3d32b2093bf9868555d9b65f49b4429abae9abdf2e7ac8a1cbb1cf4", + "language": "Perl", + "lines": 66, + "truncated": false, + "block": 1, + "row": 4663 + }, + { + "path": "areacorr.m", + "sha256": "560ea9ab5d76c38f02bcb534880a05f0957ea02a2733ea0879edb830833ed1c7", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 1, + "row": 2857 + }, + { + "path": "asmToC.r.sh", + "sha256": "d6c7b035c47c67b8075a7dbb382eaf058024d2d5a2f2194e03d7b42d03e94760", + "language": "Shell", + "lines": 2, + "truncated": false, + "block": 1, + "row": 11123 + }, + { + "path": "asmb-comp.r", + "sha256": "9028648f29831f3038e0b33ea6ba08a04d209bfc8974b40a51e0da50c1262975", + "language": "R", + "lines": 19, + "truncated": false, + "block": 1, + "row": 9965 + }, + { + "path": "asn2gbk.pl", + "sha256": "74141d0951f5933cb58c15b5ce917aa6551d0087eff5cf972747cfaf4de8f0b9", + "language": "Perl", + "lines": 37, + "truncated": false, + "block": 1, + "row": 4588 + }, + { + "path": "assemble.pl", + "sha256": "3b4cd290209323913587a3bd3946e749a968dd7310d7857551654d9c8a139a75", + "language": "Perl", + "lines": 93, + "truncated": false, + "block": 1, + "row": 4791 + }, + { + "path": "assemble_paths.m", + "sha256": "51146ba999a6c850a78951371061bdae1063f8e321278a749f5e94f4298c5ec7", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 1, + "row": 2525 + }, + { + "path": "assemblecontgraph.pl", + "sha256": "def29d375bbde23a5a2d2e42d23d52f9ff8315790556a7dacee3ce1123179b1b", + "language": "Perl", + "lines": 51, + "truncated": false, + "block": 1, + "row": 4586 + }, + { + "path": "atacParse.pl", + "sha256": "90408de11fe6625a46e6974577347d3b5c772e89df5e17a6d62ce9cc57fe38e0", + "language": "Perl", + "lines": 17, + "truncated": false, + "block": 1, + "row": 4402 + }, + { + "path": "audicd.sh", + "sha256": "45832267ad47e291c8143b8e6fca4817134b859f047865997acec7639046887c", + "language": "Shell", + "lines": 8, + "truncated": false, + "block": 1, + "row": 11172 + }, + { + "path": "augPredmissing.r", + "sha256": "563f40ebb0755afc75afd6510429143a97eed0c1fa6a327e3f1b14ed33e643c4", + "language": "R", + "lines": 7, + "truncated": false, + "block": 1, + "row": 9908 + }, + { + "path": "avbintest.py", + "sha256": "83fb2cf1d501b5d610c08958e8f5f1c0df14b805f625098b48f8fc840c7fc435", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 1, + "row": 5119 + }, + { + "path": "avgls.pl", + "sha256": "dd46a93ebdb6b1a3daf6ffe0b5a24cbd9de4ab9d38d5378996afe3596f2664d9", + "language": "Perl", + "lines": 61, + "truncated": false, + "block": 1, + "row": 4733 + }, + { + "path": "ayuCycle.rmd", + "sha256": "0f0d40dabb14c3b6cf30d729f0ada075b0f97ab36eb4288547da72c7d53fe1ad", + "language": "R", + "lines": 155, + "truncated": false, + "block": 1, + "row": 10266 + }, + { + "path": "ayuMGrast.rmd", + "sha256": "774d7c21af22fd5b4481d284e1a012a83e1f8e6ff430f3859d1f6c67f6673db4", + "language": "R", + "lines": 978, + "truncated": false, + "block": 1, + "row": 10592 + }, + { + "path": "ayuML.rmd", + "sha256": "3bb29c52f6fd6529bb70cecef30ad17f877fad74b4d8d0738148a8b4d8cac369", + "language": "R", + "lines": 257, + "truncated": false, + "block": 1, + "row": 10353 + }, + { + "path": "bac2lib.pl", + "sha256": "fa2b3682d127fe9e298aea270d8a0aa3da536f2f32b8e0e7ae35b1ef6a9685f6", + "language": "Perl", + "lines": 47, + "truncated": false, + "block": 1, + "row": 4642 + }, + { + "path": "bac2pair.pl", + "sha256": "4252a764ee708825d815ec644e384541c33261b8f0d117cdb00ad81621adfa7a", + "language": "Perl", + "lines": 26, + "truncated": false, + "block": 1, + "row": 4558 + }, + { + "path": "backUp.sh", + "sha256": "3bed29bf8bcf77108256cded86ded4241a911efd3bd7bbb2924b9723bb5fe4d3", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11488 + }, + { + "path": "backUpPD.sh", + "sha256": "55ba664ef2452bee8e7278179af0928912c3b526884f6eee8544f45576a96da3", + "language": "Shell", + "lines": 17, + "truncated": false, + "block": 1, + "row": 11411 + }, + { + "path": "backUpTTP.sh", + "sha256": "646e3a71dab9610c07c4dd80fafff6373e4ce1051a60f78ce8c5c53a0f4b40e3", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 1, + "row": 11492 + }, + { + "path": "barChart.js", + "sha256": "506fd344b11cf7c95da86e1471d7396a7d4f4e329ed1e530e0a5182822d18ea9", + "language": "JavaScript", + "lines": 12, + "truncated": false, + "block": 1, + "row": 650 + }, + { + "path": "batchEffectAnalysis.py", + "sha256": "6e0f8c524473b04f93353be9945c70ac4284778cba08c2b52e771a02ed370e73", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 6160 + }, + { + "path": "batchEffectAnalysis.rmd", + "sha256": "fbf8f4aecde85a4c832b799cd701fe7d2b7bd2ef79432b74b439c6a6d671262a", + "language": "R", + "lines": 768, + "truncated": false, + "block": 1, + "row": 10586 + }, + { + "path": "bbswork.sh", + "sha256": "dc328f36e0a11d242c8311d676e862e8123f4a738611bcafa2d5882cf97a91ce", + "language": "Shell", + "lines": 23, + "truncated": false, + "block": 1, + "row": 11164 + }, + { + "path": "beep_player.pl", + "sha256": "59d6f4d50620f459924d3f683db4cdb9f6908c3b81522ef332de9fc5a5469385", + "language": "Perl", + "lines": 13, + "truncated": false, + "block": 1, + "row": 4383 + }, + { + "path": "benchmarkProteomics.py", + "sha256": "7d604afc71bc5a53ed6f34f7b60646054b69b1e1cadc68dd6d919de657f0ed44", + "language": "Python", + "lines": 885, + "truncated": false, + "block": 1, + "row": 9706 + }, + { + "path": "bep.r", + "sha256": "b0f802850decac099c088f6d2979dece3bbeb468e619016418809586d3dc09fd", + "language": "R", + "lines": 22, + "truncated": false, + "block": 1, + "row": 9971 + }, + { + "path": "bhattu2.pl", + "sha256": "8e07f2f0515a2c56629870b637604a2dbe4c4df47b52028db8da28771a43b42e", + "language": "Perl", + "lines": 58, + "truncated": false, + "block": 1, + "row": 4744 + }, + { + "path": "binclasssat.m", + "sha256": "6108a63c8f5ad28150a5c6bf00c9bb82877db8d8fda3536f498fb53539ad112f", + "language": "MATLAB", + "lines": 72, + "truncated": false, + "block": 1, + "row": 3236 + }, + { + "path": "bincombinations.r", + "sha256": "62353672a640ff838b43afae6b6e6caac0c36095c17dd7b7e0af586cfb98bc53", + "language": "R", + "lines": 13, + "truncated": false, + "block": 1, + "row": 9904 + }, + { + "path": "bkl.pl", + "sha256": "050bf884d60ff95d6f681a821ae052cbe19401e7be2a56dff5dbf26a46ed021f", + "language": "Perl", + "lines": 24, + "truncated": false, + "block": 1, + "row": 4548 + }, + { + "path": "bl2seq.pl", + "sha256": "40ff042458c6ef11ec35eb8694f4a6e6db9c513e346eed5d8f2cb6914b909dd4", + "language": "Perl", + "lines": 100, + "truncated": false, + "block": 1, + "row": 4821 + }, + { + "path": "bladder.r", + "sha256": "aff51421af0bd4b3be2f071692a19e5c8151e17d5257e760444e018a0b5ce615", + "language": "R", + "lines": 37, + "truncated": false, + "block": 1, + "row": 10020 + }, + { + "path": "blast2nr_parallel.pl", + "sha256": "1f8f57f70ffd4aec7a64b2159d44c0755e588565021fb73a0b4f212dba7f8d9e", + "language": "Perl", + "lines": 26, + "truncated": false, + "block": 1, + "row": 4478 + }, + { + "path": "blastn.pl", + "sha256": "29cbaed224385c5933303f616e170d37f3fd74b3ed301389073b7ace3da413a8", + "language": "Perl", + "lines": 119, + "truncated": false, + "block": 1, + "row": 4815 + }, + { + "path": "bloodtransfusion.rmd", + "sha256": "e527d5c80bc88f137b4fecc3b536a4abad6194997e02a026bfe452b220cb2fe2", + "language": "R", + "lines": 45, + "truncated": false, + "block": 1, + "row": 10035 + }, + { + "path": "bmi_proc.m", + "sha256": "0cf41347fb1a433877ea9fe5c61c65f19f0f42daf25cb56ef42b8df0e535fb7b", + "language": "MATLAB", + "lines": 53, + "truncated": false, + "block": 1, + "row": 2759 + }, + { + "path": "bogus-run.sh", + "sha256": "b42fd7048cfd6ddc54d12029b044e577d65ef6b6a55c645b3a550088b83bf9e5", + "language": "Shell", + "lines": 78, + "truncated": false, + "block": 1, + "row": 11647 + }, + { + "path": "boltz2JSON.py", + "sha256": "b98ea9f27b1b644711c917c908ff66385cd92bf30ce04b45175d3517409d7734", + "language": "Python", + "lines": 207, + "truncated": false, + "block": 1, + "row": 8181 + }, + { + "path": "boltz2dock.py", + "sha256": "fcde373577c371afaf20e501119d7201f73f34fb17bc3254e27754705dcb968e", + "language": "Python", + "lines": 296, + "truncated": false, + "block": 1, + "row": 8465 + }, + { + "path": "bp.pl", + "sha256": "eafa460a9b4e156364ad4953259fb3825e57ea4258b2b6a32c0b66104668cc34", + "language": "Perl", + "lines": 99, + "truncated": false, + "block": 1, + "row": 4870 + }, + { + "path": "bpfas.pl", + "sha256": "c0fa0b2eecb77b14c774691bf6b386b9a007d13d0b59eeeda3dcf18889b973f2", + "language": "Perl", + "lines": 79, + "truncated": false, + "block": 1, + "row": 4746 + }, + { + "path": "bplgf.m", + "sha256": "d839e42ae80fb6b373fdaaef9e02cc3bdfa625574c4eb0f09a53e455dc3f5d17", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 1, + "row": 2580 + }, + { + "path": "brapaclus.m", + "sha256": "94d0889c00f7cda62dc8da9c30ed7fb2b20a1a9bbced786e9446e113e84d0fff", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 1, + "row": 2972 + }, + { + "path": "brapaclust.m", + "sha256": "35871842dc963d0b8880de9a50b7fade04fa4a1805732c6bf1cc213359e26337", + "language": "MATLAB", + "lines": 264, + "truncated": false, + "block": 1, + "row": 3900 + }, + { + "path": "bs.pl", + "sha256": "e3e5728334a95c8a06336e2ac5886d51c9c3db47659dedb6b17dcbdc8fbf7151", + "language": "Perl", + "lines": 108, + "truncated": false, + "block": 1, + "row": 4829 + }, + { + "path": "bsacomp.m", + "sha256": "1dd7be45c7f2499fd3a67100d10d3cb88da91013c2d11e216454720e0a4fb3bd", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 1, + "row": 2840 + }, + { + "path": "bsaplot.m", + "sha256": "8d3c593081d2b298c79e74156cb329198185ec8639ee33c261355f2d66c659df", + "language": "MATLAB", + "lines": 322, + "truncated": false, + "block": 1, + "row": 3897 + }, + { + "path": "bshstart.sh", + "sha256": "a175f70d41b55104156fe8767407ea38a097e19cc54f3833f0174d19087c6a51", + "language": "Shell", + "lines": 18, + "truncated": false, + "block": 1, + "row": 11165 + }, + { + "path": "c.r", + "sha256": "bc02b795dedc54524f8c6ee7d23d309a8c75a8f0bedf4fc5e5bd971d4e334461", + "language": "R", + "lines": 31, + "truncated": false, + "block": 1, + "row": 9955 + }, + { + "path": "calc.pl", + "sha256": "09424c4470f6abe1f945aa145b9c3da2bbfbeccee658d0bcbd2d75e3578f87f2", + "language": "Perl", + "lines": 46, + "truncated": false, + "block": 1, + "row": 4575 + }, + { + "path": "calc_score.pl", + "sha256": "17f73365f4f1034f954eadc94305c58adf5b452d6a3be5b5493c900388e5832d", + "language": "Perl", + "lines": 42, + "truncated": false, + "block": 1, + "row": 4650 + }, + { + "path": "calculate_synergy.m", + "sha256": "4c0fb3c5f26141fe4dac69ac2a67db76e26307522f4c79e45512253089f1598b", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 1, + "row": 2648 + }, + { + "path": "cancgeneextractor.pl", + "sha256": "5ec641ad862dee6c214d6a421293eb190affbafd6ffb1e781e9700aff9ef2a5b", + "language": "Perl", + "lines": 34, + "truncated": false, + "block": 1, + "row": 4581 + }, + { + "path": "cap3.sh", + "sha256": "378b03b45126a7c2625a0dd5d4158cd9ebfdeb6f2047d72e0cbd10630081c91a", + "language": "Shell", + "lines": 3, + "truncated": false, + "block": 1, + "row": 11110 + }, + { + "path": "cas.pl", + "sha256": "04f7d4f0fc024a1de5ba640f431601a753d383d169be07cb2151c8d04c7522f6", + "language": "Perl", + "lines": 33, + "truncated": false, + "block": 1, + "row": 4486 + }, + { + "path": "category-counting-with-ID.pl", + "sha256": "cfbf9169f1d5c97aef5f6d3bf7d32b689b18cbf8f3a5e797f785fb711b7a5799", + "language": "Perl", + "lines": 74, + "truncated": false, + "block": 1, + "row": 4750 + }, + { + "path": "cds_gbk.pl", + "sha256": "064ba702c5056b898291c2bdaa6c4a494d928f34c59e43c95a0df27b1c9dd987", + "language": "Perl", + "lines": 39, + "truncated": false, + "block": 1, + "row": 4635 + }, + { + "path": "ce7_ext.pl", + "sha256": "18eaf4796ce9f3c5a68ba281e96c6c18718ff1006ea61c21807d55d7558d056c", + "language": "Perl", + "lines": 234, + "truncated": false, + "block": 1, + "row": 4911 + }, + { + "path": "chains2inserts.pl", + "sha256": "fc9dc15643b4a3aeabe8573917881bca3b6404211277954538742d8171a25fd7", + "language": "Perl", + "lines": 298, + "truncated": false, + "block": 1, + "row": 4932 + }, + { + "path": "chaitin.r", + "sha256": "78fd0cdc6c503fc3696aa3930d5869e94c2393d71189766013bf1aa1815dedf8", + "language": "R", + "lines": 193, + "truncated": false, + "block": 1, + "row": 10291 + }, + { + "path": "checkFFT.r", + "sha256": "986859b29817a03fd66fc813b996cae94cfe560d2379c2aa3fb398595c31857e", + "language": "R", + "lines": 11, + "truncated": false, + "block": 1, + "row": 9921 + }, + { + "path": "checkHydro.pl", + "sha256": "068325d7201a4245595149745da6aac700161b319d101c79013ea5e2b692d003", + "language": "Perl", + "lines": 140, + "truncated": false, + "block": 1, + "row": 4847 + }, + { + "path": "checkIncorporationRate.py", + "sha256": "bc1f2ce286f33cbc39c8554bb1fd7e86d9c0a9cbe90daa1cb3a04f50da6d8efe", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 1, + "row": 7228 + }, + { + "path": "checkSequence.pl", + "sha256": "aeae44f5aef8d64c67f3ea2979d9903e37a7cce61ff4b4c1d364264c1f0992ca", + "language": "Perl", + "lines": 91, + "truncated": false, + "block": 1, + "row": 4765 + }, + { + "path": "checkabundance.pl", + "sha256": "4fe56b7740621d6fc74200278ef544ac99b91577015bdf6cf5864e6ea47c0f40", + "language": "Perl", + "lines": 39, + "truncated": false, + "block": 1, + "row": 4482 + }, + { + "path": "checkpepmod.pl", + "sha256": "c581a8fca829cb59a412bff1c57136bef2a6e5419b981088a46f84c026c614f4", + "language": "Perl", + "lines": 59, + "truncated": false, + "block": 1, + "row": 4629 + }, + { + "path": "checkrule.pl", + "sha256": "f593636e17588015d2f2f2f83d175a8db2414daffb514e3e6a767f12dfcc995b", + "language": "Perl", + "lines": 138, + "truncated": false, + "block": 1, + "row": 4868 + }, + { + "path": "chempy_model03.py", + "sha256": "7180646829e4f59dd4c002982a3877b5ff6e33be2a1d5b4e6e1422e24a05ba7e", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 1, + "row": 5979 + }, + { + "path": "chkchg.sh", + "sha256": "3645ef04fda7a428083a50c046f2a7539c51261b27cf233ae46ec4c25b7f6c16", + "language": "Shell", + "lines": 8, + "truncated": false, + "block": 1, + "row": 11129 + }, + { + "path": "choose_row.pl", + "sha256": "815a68a29048a2b8b2bd631c269df3be4f493ca0ea774d09a0506b44d4453631", + "language": "Perl", + "lines": 38, + "truncated": false, + "block": 1, + "row": 4613 + }, + { + "path": "class.pl", + "sha256": "db24cb7288767b0506e5a43131a0af91a9c9030d2b53a7b99162114d7c4c76aa", + "language": "Perl", + "lines": 81, + "truncated": false, + "block": 1, + "row": 4661 + }, + { + "path": "clinTrialSim.r", + "sha256": "3cfc97d4d0fe902183e8d7f259dfdec6a7d04a42bb00fb502254fc9b15de1228", + "language": "R", + "lines": 15, + "truncated": false, + "block": 1, + "row": 10018 + }, + { + "path": "clockIn.py", + "sha256": "42f96102c28264a212fbb121783c54cd434673107f19bcb5e977d75979b0f9f9", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 1, + "row": 5688 + }, + { + "path": "clockOut.py", + "sha256": "ccc563583304637134bec06c991cdbb8445a9eb0886789e13cdc35e48d2ecc74", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 1, + "row": 5689 + }, + { + "path": "clusplot-out.r", + "sha256": "eaa5a93d12b02f072007df60f96e5cd2800cad61e221c5dce4177351ce1a9a60", + "language": "R", + "lines": 29, + "truncated": false, + "block": 1, + "row": 9983 + }, + { + "path": "clustcodon.r", + "sha256": "098c2cc45c4e2a2a753b86109cd50e5c188cb3f96cff683e1b9f0ce028b39d16", + "language": "R", + "lines": 4, + "truncated": false, + "block": 1, + "row": 9898 + }, + { + "path": "cluster_sort.pl", + "sha256": "f9bdbe6e142811d23613178c6e9f85dbd170c30222e60984e3be455e47a70c2e", + "language": "Perl", + "lines": 61, + "truncated": false, + "block": 1, + "row": 4679 + }, + { + "path": "clustering.r", + "sha256": "417255b9412a07da6550d956dc39f7233908998576a56a35a559b9e586638b89", + "language": "R", + "lines": 8, + "truncated": false, + "block": 1, + "row": 9905 + }, + { + "path": "clusters2.pl", + "sha256": "f0fc78608ad49c508e299084beba09d6edeab0f2e0d7501572284e424a982b23", + "language": "Perl", + "lines": 28, + "truncated": false, + "block": 1, + "row": 4540 + }, + { + "path": "cmeans.r", + "sha256": "fee3d4c29e8d6ca158ae5c72b0517ddaa0ab84cb89eef56591ab0be0bc982ab4", + "language": "R", + "lines": 153, + "truncated": false, + "block": 1, + "row": 10274 + }, + { + "path": "cmp1.pl", + "sha256": "49d5e37752d0efd7ba498a1945954a395db1ee693d51259318b1327822835860", + "language": "Perl", + "lines": 63, + "truncated": false, + "block": 1, + "row": 4720 + }, + { + "path": "cmpfile.pl", + "sha256": "9b68052d3ea083f8978d0627e1bb424aca16d50b50ddb97c57ce13f61f898703", + "language": "Perl", + "lines": 217, + "truncated": false, + "block": 1, + "row": 4915 + }, + { + "path": "cntgbk.pl", + "sha256": "73f28ec1153c64afa0ca35203c3efce22f82d77a449922f871aa60c7ba7647ae", + "language": "Perl", + "lines": 36, + "truncated": false, + "block": 1, + "row": 4578 + }, + { + "path": "code.pl", + "sha256": "fd996a394d733f2ca047f389418e6d3672d66600f5ad3c9d5ee735adafeecd0b", + "language": "Perl", + "lines": 273, + "truncated": false, + "block": 1, + "row": 4941 + }, + { + "path": "codeGenerWarren.pl", + "sha256": "53b4fea4d313b84f7d9135c6b5487e1708b3a0a045ae7bb1454fa24b03776168", + "language": "Perl", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4685 + }, + { + "path": "code_assign_feature.or.pl", + "sha256": "3a48a3f4cd71c2249c2fc357f30bffa189220dd5c5374c822fd34e9a9acc86a9", + "language": "Perl", + "lines": 77, + "truncated": false, + "block": 1, + "row": 4754 + }, + { + "path": "code_assign_feature.pl", + "sha256": "fde980b9df602bab5982313b539f9c60c5c5a2a8c94be506d8fe2289dad7e898", + "language": "Perl", + "lines": 113, + "truncated": false, + "block": 1, + "row": 4878 + }, + { + "path": "code_rounding_correction.pl", + "sha256": "03a4f7c04ce793b4ea273e970e1fe10cfb662d2621723b1124100610fc7d7f5e", + "language": "Perl", + "lines": 71, + "truncated": false, + "block": 1, + "row": 4717 + }, + { + "path": "coden.pl", + "sha256": "4c96a0c9e73247680bf05d115d73270c4ca8937ecc2f22555b16fe45419a20d1", + "language": "Perl", + "lines": 199, + "truncated": false, + "block": 1, + "row": 4918 + }, + { + "path": "codestandard.pl", + "sha256": "3b4411b43c11ec185a0d1f0c877ca23617a2780349e0efe770209eaf4238c4a7", + "language": "Perl", + "lines": 25, + "truncated": false, + "block": 1, + "row": 4437 + }, + { + "path": "codon2AA.pl", + "sha256": "2d4569c86388d44e5680475780a8fd5e0d7e57785b43ec4ffed353cb0d199f95", + "language": "Perl", + "lines": 52, + "truncated": false, + "block": 1, + "row": 4528 + }, + { + "path": "codonUsageSelect.r", + "sha256": "dd0ac97a82f5385e01df6bfb2a27ac19ae413015c525bd26cae325665d0a97a4", + "language": "R", + "lines": 44, + "truncated": false, + "block": 1, + "row": 10113 + }, + { + "path": "codoncollect.pl", + "sha256": "6fee9d1813de39676b80aadbb6d7b13a910d17e9899e18f440204aab63455854", + "language": "Perl", + "lines": 31, + "truncated": false, + "block": 1, + "row": 4469 + }, + { + "path": "codoncollectaa.pl", + "sha256": "0c476c824e84cb58c9d324196ee6c5df8a24b4cb5b4ba8b90d5dfe492e01a549", + "language": "Perl", + "lines": 41, + "truncated": false, + "block": 1, + "row": 4513 + }, + { + "path": "codonusage.m", + "sha256": "d57270e935677f9e26697b2e65970514c9e396d111d5d594020df4b7a5b69ee1", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 1, + "row": 3014 + }, + { + "path": "codonusage.pl", + "sha256": "e7b482aa7d871976ac4e07930119c5bdfb3e9bdd7043618f612eee2ee63d8d82", + "language": "Perl", + "lines": 128, + "truncated": false, + "block": 1, + "row": 4891 + }, + { + "path": "codonusage.py", + "sha256": "9fd9b25c7efbc35cdbb1f7f33e58a8ffc79add3dcec1e69d226cec89e1baf647", + "language": "Python", + "lines": 168, + "truncated": false, + "block": 1, + "row": 6982 + }, + { + "path": "coef.r", + "sha256": "f0f6e35ed5de7243aa463af177273c57bddd33f19b5a6706937bd492c0493a16", + "language": "R", + "lines": 14, + "truncated": false, + "block": 1, + "row": 9923 + }, + { + "path": "coherall.m", + "sha256": "789f808da55d68a1c14eeaafaf38e44dd0422c679a64875e3e7e03380b079eb4", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 1, + "row": 2721 + }, + { + "path": "coherence.m", + "sha256": "30a4218b444e2f71588b67e6639bc795efe58c9b8433ce0c794aba2bcc8b6824", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 1, + "row": 2978 + }, + { + "path": "col_ftr_from_all.72.pl", + "sha256": "50e7a4cb5ab6ce275ab2754397882aef6b373332e316d76f687043046676382e", + "language": "Perl", + "lines": 22, + "truncated": false, + "block": 1, + "row": 4425 + }, + { + "path": "collftr.pl", + "sha256": "1a5acbe71865574f234f22e9604dc3c37ae3c222cfc42b74a05f54d8ebea1b73", + "language": "Perl", + "lines": 13, + "truncated": false, + "block": 1, + "row": 4409 + }, + { + "path": "colo.pl", + "sha256": "c4d38db99a2f852b54038d3fc98853238f69ff72499c4b27b1cd6d0990d9759a", + "language": "Perl", + "lines": 24, + "truncated": false, + "block": 1, + "row": 4522 + }, + { + "path": "colorrange.c", + "sha256": "2f8150d88215d950089170d0bb7cf150ce764d480551d9f6d813c0cc0b0d151a", + "language": "C", + "lines": 146, + "truncated": false, + "block": 1, + "row": 39 + }, + { + "path": "colorsys.py", + "sha256": "63a7a8e848ccd981b9e713bff1ecbd686fb269cdc17f7e4c6c1f3afe9322267b", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 1, + "row": 6900 + }, + { + "path": "combcsv.pl", + "sha256": "52993d45efb247a1460c4333e5b3e27ecc19cf35f965fc0b7ca5013dc5a133e4", + "language": "Perl", + "lines": 58, + "truncated": false, + "block": 1, + "row": 4677 + }, + { + "path": "combineCSV.r", + "sha256": "531e5c8cb18ec6555a0ae7b98c9e7989ad024d53327cac05816206634f4ee208", + "language": "R", + "lines": 60, + "truncated": false, + "block": 1, + "row": 10110 + }, + { + "path": "combineExcelReport.pl", + "sha256": "8b674b09d5c944349654c9a73b1f7be5a2eb81fadddef257c7c52a4d38cd566e", + "language": "Perl", + "lines": 65, + "truncated": false, + "block": 1, + "row": 4656 + }, + { + "path": "combineExcelReport.py", + "sha256": "5219373a57cb59c5f738e241071ec4e2f929cb975f7228f0e765dff5a0292120", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 1, + "row": 6770 + }, + { + "path": "combineReports.pl", + "sha256": "3f95c66c604eef3d3b70daa0f82a4ff399f529702c442a8cdfb2a9ccb69aeb28", + "language": "Perl", + "lines": 79, + "truncated": false, + "block": 1, + "row": 4738 + }, + { + "path": "combineTxt.r", + "sha256": "36a69e78e7951b91a1bfdf03d3974042810e2bd0d4ef52ee7f626c5a4534b3d8", + "language": "R", + "lines": 56, + "truncated": false, + "block": 1, + "row": 10114 + }, + { + "path": "combineTxtFilesToXlsx.r", + "sha256": "10765f56078c95caa86f5294eaa384d7398e5258df070f4ebd1b22abb4ea997a", + "language": "R", + "lines": 96, + "truncated": false, + "block": 1, + "row": 10223 + }, + { + "path": "combineXlinkReports.pl", + "sha256": "f55bc003886eb845bf4981e600416d131de9340a4a306464080a84c02144cc5a", + "language": "Perl", + "lines": 73, + "truncated": false, + "block": 1, + "row": 4716 + }, + { + "path": "combineXlsx.r", + "sha256": "97c91c82a5604e3dd7f89d42d08f93f4672866566757b1b9c6b0c584b209aabc", + "language": "R", + "lines": 56, + "truncated": false, + "block": 1, + "row": 10135 + }, + { + "path": "combo.py", + "sha256": "fb898ad9ded8561266e3e37f8e95e7f76b389c6dcf06b66fd04c85e4e8c55ed9", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 1, + "row": 5216 + }, + { + "path": "combos.pl", + "sha256": "374057bbc4c2e99e2d74ed6ffe0ce3c6111e09f1c1383e74c154a487c5b4cf78", + "language": "Perl", + "lines": 79, + "truncated": false, + "block": 1, + "row": 4789 + }, + { + "path": "commWrapper.pl", + "sha256": "0defe0e0445f20b414615c84e416fdad0c0174cc38c0c7c7452776f9d59c00a9", + "language": "Perl", + "lines": 19, + "truncated": false, + "block": 1, + "row": 4406 + }, + { + "path": "commands.py", + "sha256": "abfcff867a7230dde40d0471d99e9f4683ea45ca02522851377e2367ba81f6ef", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 1, + "row": 5891 + }, + { + "path": "common.pl", + "sha256": "f1ebd07e0e7b88d62122c2be2e5272c286fa93bb64b51731d495e81552fa2574", + "language": "Perl", + "lines": 22, + "truncated": false, + "block": 1, + "row": 4529 + }, + { + "path": "common.py", + "sha256": "3e5d689392ef4df603fd416fe193709c455d4480e64a52f3c853b07bf2aa408f", + "language": "Python", + "lines": 165, + "truncated": false, + "block": 1, + "row": 7874 + }, + { + "path": "common.sh", + "sha256": "a665f77b52d998062395ab14c9f6693e1b5a5b518ecc1210626a315b6ff5c205", + "language": "Shell", + "lines": 66, + "truncated": false, + "block": 1, + "row": 11629 + }, + { + "path": "comp-ensembl-cord.pl", + "sha256": "4d40af1983ff2b572f7bfe21bd3d599e7b381a5cc274dbff3768a0d35433e9a7", + "language": "Perl", + "lines": 49, + "truncated": false, + "block": 1, + "row": 4718 + }, + { + "path": "comp-int-genes-wt.pl", + "sha256": "be1137cba82585ba7b34d6a63d86a6ae0199adb78cd27cb7fbf13b66b94610cf", + "language": "Perl", + "lines": 124, + "truncated": false, + "block": 1, + "row": 4875 + }, + { + "path": "comp-int-genes.pl", + "sha256": "a757f601c17d43f969c0a2830e12b9b20a19efec78a6623038f75f16395c595d", + "language": "Perl", + "lines": 146, + "truncated": false, + "block": 1, + "row": 4898 + }, + { + "path": "compare-qc.pl", + "sha256": "d69d5f1baebd8f7c51ee561b78e7c488183dafd4676655a0fc2bf6a022b1a03c", + "language": "Perl", + "lines": 141, + "truncated": false, + "block": 1, + "row": 4897 + }, + { + "path": "compare-trim-against-map.pl", + "sha256": "399101360fb6dee1c8a15116d3dea1f413fd62d81bf31c4962670fb95c21bec1", + "language": "Perl", + "lines": 108, + "truncated": false, + "block": 1, + "row": 4843 + }, + { + "path": "compare.pl", + "sha256": "64f3e3e718f0d2fc33996aea4a4b2b077e935c1c2308f4bf2bf6ceb00ae6b9a7", + "language": "Perl", + "lines": 34, + "truncated": false, + "block": 1, + "row": 4419 + }, + { + "path": "compareDDAnDIA.py", + "sha256": "46669a427ffdc5a84219423130059e02b9bb71c47b9ef11b5c61bb754e32bf4e", + "language": "Python", + "lines": 171, + "truncated": false, + "block": 1, + "row": 7913 + }, + { + "path": "compareDIffExprDIANNmetrics.py", + "sha256": "ef356d7da7c7d6a11d37f77cd90e70982390f44c48d3473515e3c0234df4a299", + "language": "Python", + "lines": 226, + "truncated": false, + "block": 1, + "row": 8475 + }, + { + "path": "compareDIffExprDIANNvalues.py", + "sha256": "67ab177f1b708d72993e006cec13a4e557120bd2662738519ac66cad4658d2ba", + "language": "Python", + "lines": 336, + "truncated": false, + "block": 1, + "row": 8948 + }, + { + "path": "compareFastq.py", + "sha256": "6358a2c6887558178c751cb288fcde88739f7d057d95758306fdc6a660df1d4b", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 1, + "row": 7353 + }, + { + "path": "compareFastq.sh", + "sha256": "667622e600c1bc76a33f8e6fa2e0103c0c6991e4269564da0342fe6e67556d3e", + "language": "Shell", + "lines": 148, + "truncated": false, + "block": 1, + "row": 11716 + }, + { + "path": "compareFractions.rmd", + "sha256": "f778bb483eee9fbad50f50bc301129b21adf2dad85687a75ff88635851d62250", + "language": "R", + "lines": 113, + "truncated": false, + "block": 1, + "row": 10209 + }, + { + "path": "compareIQ.py", + "sha256": "fb7a0b963167b8c9baa0f0d489957b236cca62578c5c9cbe063d43755d99d5e0", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 1, + "row": 7154 + }, + { + "path": "compare_methods.R", + "sha256": "688b2213b49fb03d70e1b24fc74917f4dbb07e7ca3d6eeef73c1e935def79269", + "language": "R", + "lines": 124, + "truncated": false, + "block": 1, + "row": 10273 + }, + { + "path": "compat.py", + "sha256": "6f768ba5768385790ff652ac0a82e2c8a3e8b87f5b3223612dd895923aab8bc5", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 1, + "row": 5073 + }, + { + "path": "compile-remix.sh", + "sha256": "f84b02735e6f3b6937d6ee44f6713f5ee9f91c7e481e738874197413c538f604", + "language": "Shell", + "lines": 3, + "truncated": false, + "block": 1, + "row": 11132 + }, + { + "path": "compile-xib.sh", + "sha256": "eded4044a693712482fa61ce5088608703e70a241f09fdcb496ab2876a554c5f", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 1, + "row": 11162 + }, + { + "path": "compile.m", + "sha256": "28f00868cd515ea51dc5ee0d2b34e2b5b28ff935406000749b9eb25cd18bba96", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 1, + "row": 2258 + }, + { + "path": "compile.py", + "sha256": "30b3feb75ae65b270816c2c3b39d6ae8a7a2ea40d7b17aa6e0fb47602f2a8a76", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 1, + "row": 5010 + }, + { + "path": "completion.r", + "sha256": "f6e422cc63b49e6093c7e06f1b8f2753677338a411f84777b8ccebfab9705142", + "language": "R", + "lines": 29, + "truncated": false, + "block": 1, + "row": 9926 + }, + { + "path": "compnamecombo.pl", + "sha256": "06846e1413d6a90d045b4dd473076071562506e205bdbd51e07289483ac5b498", + "language": "Perl", + "lines": 50, + "truncated": false, + "block": 1, + "row": 4543 + }, + { + "path": "computePVal.m", + "sha256": "059cbc5ffe166b8946200be5e4d173fc7aedcb0ca7a818b1c443b5a0fbdc4271", + "language": "MATLAB", + "lines": 136, + "truncated": false, + "block": 1, + "row": 3468 + }, + { + "path": "compval.r", + "sha256": "cbb364cc2b506d017b98883005038016e0f1bc988ea3d0b33a05076c74057fd7", + "language": "R", + "lines": 23, + "truncated": false, + "block": 1, + "row": 9976 + }, + { + "path": "con237v.pl", + "sha256": "56296ec1f605e1cb4e6d625fa7843da393951ddbaf10eebbe3e6579b05434100", + "language": "Perl", + "lines": 47, + "truncated": false, + "block": 1, + "row": 4673 + }, + { + "path": "con_label_ic.pl", + "sha256": "9be97a89688f7969ff0ee264946846313318d33328f1867b4373526c089d18c3", + "language": "Perl", + "lines": 56, + "truncated": false, + "block": 1, + "row": 4709 + }, + { + "path": "con_label_ic_auto.pl", + "sha256": "8612256999c15128c9f483572335c2364f1813a8ca9eb9c018446e69a9b64f50", + "language": "Perl", + "lines": 44, + "truncated": false, + "block": 1, + "row": 4554 + }, + { + "path": "con_lr_svm.pl", + "sha256": "d21794f34e617bb99aac760cebba3d2b6501982f6b59e0ea2c118cf32a4f134b", + "language": "Perl", + "lines": 16, + "truncated": false, + "block": 1, + "row": 4544 + }, + { + "path": "concordance.pl", + "sha256": "065b13688f26525b58d57e8a5f2e9891a9e94950af664bb757f6de66089a424e", + "language": "Perl", + "lines": 168, + "truncated": false, + "block": 1, + "row": 4909 + }, + { + "path": "concordance.r", + "sha256": "5c73376d231e7581a9c53cfcf4363fe262a49bb5aceb6fd76d6d895e2e96f8c4", + "language": "R", + "lines": 28, + "truncated": false, + "block": 1, + "row": 9986 + }, + { + "path": "condense_characters.pl", + "sha256": "04985c600f7a45d8912cef0b2abcbfeeccd4b338ec1b514e96bd4cf7e0fc108b", + "language": "Perl", + "lines": 105, + "truncated": false, + "block": 1, + "row": 4713 + }, + { + "path": "config.bash", + "sha256": "07d62152cd7e73503df893b445759352f6240a15ab269718e31f4bdb1ab83fab", + "language": "Shell", + "lines": 121, + "truncated": false, + "block": 1, + "row": 11720 + }, + { + "path": "config.pl", + "sha256": "7b5584f79721bcbab1950adb925b11df305faf354b99c6a4aa42d9c751804235", + "language": "Perl", + "lines": 30, + "truncated": false, + "block": 1, + "row": 4512 + }, + { + "path": "config.py", + "sha256": "fdbe8e4bc2e4500390453c718168c8a419f126326adeb44baa0b0e053d8d4507", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 1, + "row": 5052 + }, + { + "path": "config.sh", + "sha256": "7cae11b37722f54df16c563a958f41eb4cf470ce93f1d3af49feea84a6137a0d", + "language": "Shell", + "lines": 75, + "truncated": false, + "block": 1, + "row": 11633 + }, + { + "path": "configPPM3.pl", + "sha256": "cc89263bc16294029dd7d24506813593ccf9e40f4d6339fb6206cbb4da0627f8", + "language": "Perl", + "lines": 12, + "truncated": false, + "block": 1, + "row": 4432 + }, + { + "path": "configure_atomic_ops.sh", + "sha256": "ba769cbf5b8c06fadc94d9829c1af7d9397518a780803396f93fc944e57b4592", + "language": "Shell", + "lines": 4, + "truncated": false, + "block": 1, + "row": 11114 + }, + { + "path": "confint.r", + "sha256": "e7046014a92d4b3611a787a3db0d1f70027948d2c1b3b35412ee78f87b8de31e", + "language": "R", + "lines": 26, + "truncated": false, + "block": 1, + "row": 9954 + }, + { + "path": "connplotter.py", + "sha256": "361f092a821f2fb7973d3a58e74cda2c18217e93194ef3b06e70d2f478ca7cfa", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 1, + "row": 5132 + }, + { + "path": "consts.py", + "sha256": "4da6b5c117891c5f2e1148a41292da07c266a748bf087d3a1321c59d1ddee10d", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 1, + "row": 5272 + }, + { + "path": "contact-update.pl", + "sha256": "42508aed7fcc658d80c493ae8c730a5db36a7911f3468f242fea631b6c5fe266", + "language": "Perl", + "lines": 134, + "truncated": false, + "block": 1, + "row": 4811 + }, + { + "path": "contgraph.pl", + "sha256": "71072e5e6c27b4b955856d0ed5fefc9af9c02a82998c15e048de50d97498b49f", + "language": "Perl", + "lines": 223, + "truncated": false, + "block": 1, + "row": 4937 + }, + { + "path": "contig.pl", + "sha256": "52bb4959cb34576baaed34c4071a00fe27789c681a373b72e8ab8ff236bf2c5f", + "language": "Perl", + "lines": 17, + "truncated": false, + "block": 1, + "row": 4393 + }, + { + "path": "contig2gff.pl", + "sha256": "ec412ffa7282a75bce07ee77caa2641db0cf79b9fd1fe22d78967f34bce73178", + "language": "Perl", + "lines": 40, + "truncated": false, + "block": 1, + "row": 4503 + }, + { + "path": "contigAccession.pl", + "sha256": "10dd43e16a462e0f42ffeafdb4148f69c09c336364d9d829c8703634f04a484f", + "language": "Perl", + "lines": 129, + "truncated": false, + "block": 1, + "row": 4884 + }, + { + "path": "contigview.pl", + "sha256": "bb6910035575128df9bebbcdb51b4f340a578ca21e899867c0ce20b253d5ef2d", + "language": "Perl", + "lines": 34, + "truncated": false, + "block": 1, + "row": 4487 + }, + { + "path": "contractpath.pl", + "sha256": "ad0de521b4cb03c90fb15dac24d6998953af166ac5584c3ac3d71458e20b7f75", + "language": "Perl", + "lines": 15, + "truncated": false, + "block": 1, + "row": 4382 + }, + { + "path": "controlUTRexpression.py", + "sha256": "d747aed6f1c2fde9082cac7a1ab328e0e335393ad86c35077ad256328c660086", + "language": "Python", + "lines": 230, + "truncated": false, + "block": 1, + "row": 8019 + }, + { + "path": "conv.pl", + "sha256": "3be2ce4abe313bba6c95a0944c69aa74a579cf69ae7f7c27f1bb0b4cfc16632b", + "language": "Perl", + "lines": 29, + "truncated": false, + "block": 1, + "row": 4485 + }, + { + "path": "conv.sh", + "sha256": "a3af108c9ca5a9a0873379ee90006823bbe5ab0dfb8f936713255d7a8fa0b152", + "language": "Shell", + "lines": 10, + "truncated": false, + "block": 1, + "row": 11137 + }, + { + "path": "conv_txt2arffWfil.pl", + "sha256": "78d9b6124aee8b108271659e4a8f40d648756bfdcc5f07a31bf1d16c2471c05c", + "language": "Perl", + "lines": 9, + "truncated": false, + "block": 1, + "row": 4405 + }, + { + "path": "conv_txt2arffWfilOrf.pl", + "sha256": "c84092ec7af8c1d4bcfd0dee341a0a8081e3e312d0e2f36bcdc855ca0a02001c", + "language": "Perl", + "lines": 10, + "truncated": false, + "block": 1, + "row": 4418 + }, + { + "path": "convcsv.pl", + "sha256": "553010cc48489e8e17d171a1d9854a93f68e720dc143144d7302964e450747f9", + "language": "Perl", + "lines": 9, + "truncated": false, + "block": 1, + "row": 4377 + }, + { + "path": "convolve.py", + "sha256": "358efbc0e235c8a8d961101d96ec07a8ec7c0d9d0bb9bd5baf8708aeed7e4a72", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 1, + "row": 5314 + }, + { + "path": "convoptclass.m", + "sha256": "42a50fa5bffd860d9a7c9b6c8e35985e2def90b5053f491126ac7e143fc33d42", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 1, + "row": 2670 + }, + { + "path": "copyEnv.r", + "sha256": "7b5d428caf9eb5e7587b277074a8a1286d193cdf7f48f61dfc8a3b9409ed50f3", + "language": "R", + "lines": 14, + "truncated": false, + "block": 1, + "row": 9920 + }, + { + "path": "copyright.pl", + "sha256": "98619ae43fd2009b4398ac7fff5441fbc6fb31df7f33f32c015b72ce7372184d", + "language": "Perl", + "lines": 361, + "truncated": false, + "block": 1, + "row": 4951 + }, + { + "path": "cor1.r", + "sha256": "5beeb0feea6ada29ee4e7ee18c0c343b276f29d3fe870d06a529f3943eb54e0e", + "language": "R", + "lines": 9, + "truncated": false, + "block": 1, + "row": 9907 + }, + { + "path": "corana.pl", + "sha256": "dc2f3c552d42a2996802e610c2b52adbecc3fa4bb31ebdfd1951770a7290c6a5", + "language": "Perl", + "lines": 26, + "truncated": false, + "block": 1, + "row": 4452 + }, + { + "path": "correct_elem.pl", + "sha256": "caeb75e46e7425ba92ccd6b6edf71303b0395cd23aa860edb5b09f2be7ec4402", + "language": "Perl", + "lines": 2, + "truncated": false, + "block": 1, + "row": 4372 + }, + { + "path": "correst.r", + "sha256": "364a20d7186115e20d081e66127214e717137a96d2944d80bcb8043165303676", + "language": "R", + "lines": 10, + "truncated": false, + "block": 1, + "row": 9929 + }, + { + "path": "corseqcol1.pl", + "sha256": "5287949f56f1de3550b970fbd3eba5ad0e09b027cd35bd04ee1b0bc802a44bc7", + "language": "Perl", + "lines": 135, + "truncated": false, + "block": 1, + "row": 4824 + }, + { + "path": "count.pl", + "sha256": "1872181453cc2d3b88e13e8ca7ed57b295587c8ad0dc0ab4053b5a1ddc63c845", + "language": "Perl", + "lines": 17, + "truncated": false, + "block": 1, + "row": 4429 + }, + { + "path": "countAA.pl", + "sha256": "1420ab71b125db44818d72b7c961fc299f4958aa58eec9b6d9441cdd9b873091", + "language": "Perl", + "lines": 55, + "truncated": false, + "block": 1, + "row": 4638 + }, + { + "path": "countATGC.pl", + "sha256": "492f7640b286d96b6f28e8e848b32c16134c507b78a806b2e9128f66bfb2d2dc", + "language": "Perl", + "lines": 103, + "truncated": false, + "block": 1, + "row": 4760 + }, + { + "path": "countColumns.py", + "sha256": "77dc953bba7b2c7c2fd872e519b8cb84f10d23dfb349e12dc3097aa07896795a", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5295 + }, + { + "path": "countGC.pl", + "sha256": "51642985432e840002fcd3cbd77fd32b4d82978323486f71f707ccefade99878", + "language": "Perl", + "lines": 25, + "truncated": false, + "block": 1, + "row": 4435 + }, + { + "path": "countN.pl", + "sha256": "ae407e310cf6d6df593e2cb242c9968d352dc3e760a9f55a51d36bd0bc680519", + "language": "Perl", + "lines": 52, + "truncated": false, + "block": 1, + "row": 4561 + }, + { + "path": "countRepeats.pl", + "sha256": "a87c9671e1a4466a4ceacfe3bf7b17fd34fddcf01ef73b877b7aa8b421194ec8", + "language": "Perl", + "lines": 39, + "truncated": false, + "block": 1, + "row": 4632 + }, + { + "path": "counter.pl", + "sha256": "5f3385e1399d30bd23d9d85c5dace02282879cd181736736c800a9f90c5021db", + "language": "Perl", + "lines": 40, + "truncated": false, + "block": 1, + "row": 4703 + }, + { + "path": "counting.r", + "sha256": "920510b27750832232ac79a71b475bed9bb76fba09638b84c08a3dc67038872c", + "language": "R", + "lines": 43, + "truncated": false, + "block": 1, + "row": 10060 + }, + { + "path": "countpattern.r", + "sha256": "bc69b50998f85fd8c742c6fa590dd2a39b845e27c01bf8db0318073c5003a775", + "language": "R", + "lines": 27, + "truncated": false, + "block": 1, + "row": 9952 + }, + { + "path": "coveragehack.pl", + "sha256": "14af871a8e906f6aec1c1276e6deba548742ee5873873bfb61abe3dcb017192a", + "language": "Perl", + "lines": 28, + "truncated": false, + "block": 1, + "row": 4459 + }, + { + "path": "cpmtf.pl", + "sha256": "22042839624c8a74e339fb86dbb9d6f9454c3659e5bd4c521b9e8d887f21fa94", + "language": "Perl", + "lines": 42, + "truncated": false, + "block": 1, + "row": 4523 + }, + { + "path": "cr1.pl", + "sha256": "2b4e7b1532c91338eec37a211f22e63d2711997e09b3c5e76dee3b1aa813b185", + "language": "Perl", + "lines": 24, + "truncated": false, + "block": 1, + "row": 4519 + }, + { + "path": "crc8.m", + "sha256": "68aaacba4103b9825ce7fb8fa04bd6221ca22a7e872e2e0d34e04889b7d82d06", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 1, + "row": 2404 + }, + { + "path": "create.pl", + "sha256": "b4d24eebde4691e779fc34a993fb0ace841661a35957090cf380bcce78b90782", + "language": "Perl", + "lines": 32, + "truncated": false, + "block": 1, + "row": 4577 + }, + { + "path": "createOverlapCorrectionJobs.pl", + "sha256": "6fd8b9d40d8e614d4becbde40300b72c0c8bd2d15876bb41eee5023ccae181da", + "language": "Perl", + "lines": 102, + "truncated": false, + "block": 1, + "row": 4874 + }, + { + "path": "createOverlapStore.pl", + "sha256": "376b8d4b7fece097a5ef0c54c7e07f310dec477d7fc8fa78dcf1ce64f04eb5b6", + "language": "Perl", + "lines": 33, + "truncated": false, + "block": 1, + "row": 4571 + }, + { + "path": "create_animation.sh", + "sha256": "0d7eebc34e33e6fb175e16f5dad2de29c52869a3759013b27674c0b59ba1d18c", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11177 + }, + { + "path": "create_music_from_string.pl", + "sha256": "d087b1d011cd4a8cb5ca58f0634bb05e2f5cf6473f2efdfa9e23b521607e83aa", + "language": "Perl", + "lines": 140, + "truncated": false, + "block": 1, + "row": 4860 + }, + { + "path": "create_music_from_string2.pl", + "sha256": "8cf001db8688f11a7ba5830093913da5490e9336263ed44c7b6c6128e3707e71", + "language": "Perl", + "lines": 141, + "truncated": false, + "block": 1, + "row": 4858 + }, + { + "path": "create_nifti.m", + "sha256": "d26e5ed1f2840dfb0ad148a612c388441064ccb65882076222c0810c622b08c2", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 1, + "row": 2719 + }, + { + "path": "create_scores_file.sh", + "sha256": "3540f64202fbc82d50d9b8062705f9bf0abf919ee2504158e958f7462d44ed10", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11157 + }, + { + "path": "createjob.pl", + "sha256": "77202aa83623d58c95ffd3836272ad58f5e88029fd984dd995ccbd38001d5e36", + "language": "Perl", + "lines": 48, + "truncated": false, + "block": 1, + "row": 4696 + }, + { + "path": "creatertf.pl", + "sha256": "6c26f398e41e6566b5585160a4b1958b1f8aadc34b31bb994ef2a2ab02bf2d84", + "language": "Perl", + "lines": 363, + "truncated": false, + "block": 1, + "row": 4931 + }, + { + "path": "createxclusionlist.m", + "sha256": "d379fbd11450302c1cd7e9bc196113b565dd5acea471ecccacae84963976157f", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 1, + "row": 2658 + }, + { + "path": "crosslink.rmd", + "sha256": "48fb06b3b8a046781c4a686eb25a6504a3ba589bc4c783ee801b70c267c7fb35", + "language": "R", + "lines": 71, + "truncated": false, + "block": 1, + "row": 10139 + }, + { + "path": "crt_idx.pl", + "sha256": "6a2bd4dcf6c76707c84bf74d6c64a8260c7d51d56b8e245eb0e5cb137440a09b", + "language": "Perl", + "lines": 19, + "truncated": false, + "block": 1, + "row": 4438 + }, + { + "path": "crtmus.pl", + "sha256": "8549537e6aa3244da171d6ba5301455aed3591ad8ca256aa242b9a18a541fba7", + "language": "Perl", + "lines": 186, + "truncated": false, + "block": 1, + "row": 4880 + }, + { + "path": "crtmus_nothresh.pl", + "sha256": "04a995e5b971f9d06c570e78ab99e525fa550ab93ed3da6cfb14e748e3053d76", + "language": "Perl", + "lines": 187, + "truncated": false, + "block": 1, + "row": 4881 + }, + { + "path": "crtpng.pl", + "sha256": "3eef0a17d0303d16d8cac6045a80c5e419d823254f18e8f5bb09a061bdbc656a", + "language": "Perl", + "lines": 24, + "truncated": false, + "block": 1, + "row": 4434 + }, + { + "path": "cs-hack.pl", + "sha256": "63b108b8613f06725f9df9da78d6e79b231d8514d15c00d664f8981b032c90ee", + "language": "Perl", + "lines": 8, + "truncated": false, + "block": 1, + "row": 4374 + }, + { + "path": "cs81.pl", + "sha256": "eac949da0bf27542b50fdd54e3ec0bc06e52536e41304ca3f60f2afef419dd39", + "language": "Perl", + "lines": 83, + "truncated": false, + "block": 1, + "row": 4790 + }, + { + "path": "cstring.m", + "sha256": "b149028e675c4041befa1b357888fa004c079e1b9546cb8235ad2d3a7810b9ef", + "language": "MATLAB", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2429 + }, + { + "path": "csv2weka_aha.pl", + "sha256": "28b043adc34af13e0f1ec51ca5a6ecf2dc7c5517c885e87f9b4bc844020b8d41", + "language": "Perl", + "lines": 27, + "truncated": false, + "block": 1, + "row": 4525 + }, + { + "path": "cta.pl", + "sha256": "7c467103759e192f7e68509c723ad357376a74aec58160ac9ad7b44b6e741fc8", + "language": "Perl", + "lines": 11, + "truncated": false, + "block": 1, + "row": 4410 + }, + { + "path": "ctriad.pl", + "sha256": "66182b5195c2a651c88037ecc85bf03e935666a5cd60edc4ae484f0fc8d2371b", + "language": "Perl", + "lines": 91, + "truncated": false, + "block": 1, + "row": 4784 + }, + { + "path": "cutChromosome.pl", + "sha256": "b018d81252726022b79ee86e18cd75bf62ea535db8b2c60fb93bc56e5f06e170", + "language": "Perl", + "lines": 30, + "truncated": false, + "block": 1, + "row": 4426 + }, + { + "path": "cutter.pl", + "sha256": "cf3274f52b2b4d2c7b8b75eab8ea3fa359a59f38b759042bffec8d8eb04b19ae", + "language": "Perl", + "lines": 18, + "truncated": false, + "block": 1, + "row": 4411 + }, + { + "path": "cyrename.pl", + "sha256": "64ac93ea044c379bbf7249684b4b4c2d7b512de85bd100e4e38328540078556d", + "language": "Perl", + "lines": 81, + "truncated": false, + "block": 1, + "row": 4693 + }, + { + "path": "cytoscape.sh", + "sha256": "1c0430fcbb9d086e3e0e33b63557939ce96fb9f26e02568d5f18a38fabd6b6ef", + "language": "Shell", + "lines": 10, + "truncated": false, + "block": 1, + "row": 11147 + }, + { + "path": "dataRaw.sh", + "sha256": "a9f38f0d92b402ffb4a4a610dd8f60ed89c77f81aba12eb31c3f7f8006f04c02", + "language": "Shell", + "lines": 10, + "truncated": false, + "block": 1, + "row": 11126 + }, + { + "path": "dataSum.py", + "sha256": "b62df77b30c92e05b29e039a71043f49754d8bc60347e9e76f26bf70a5f75314", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5443 + }, + { + "path": "dataSumPol.py", + "sha256": "f90319b9a4c5f655dc2419afbec25e501d5568bdc652f05f20193cb848e5c1b4", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 1, + "row": 5411 + }, + { + "path": "date-parse-en.pl", + "sha256": "f6ced6812052ce7204b813976e65b10e5beb065a5254f57421b526f64852a73a", + "language": "Perl", + "lines": 15, + "truncated": false, + "block": 1, + "row": 4420 + }, + { + "path": "dePep.py", + "sha256": "a5b18752f2cc8eb490bf206cf6afa78781b1a972c6fed3a72fc0b25d3f2d1e06", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 1, + "row": 6574 + }, + { + "path": "dePepComet.py", + "sha256": "176ac43de51f99faad2862040ea01edf9d89783136229910a33c0dabb96326ca", + "language": "Python", + "lines": 262, + "truncated": false, + "block": 1, + "row": 9000 + }, + { + "path": "dePepFP.py", + "sha256": "9c71cc2ad9f130e466a93a1f9e7849cee6a58c50f5ff1d7fa657766ab15a2497", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 1, + "row": 6939 + }, + { + "path": "dePepGUI.py", + "sha256": "1923f0bd723c99db0e38e3249b4009109f800ac6dbd3e091e8264a609d6b66f3", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 1, + "row": 7779 + }, + { + "path": "dePepMascot.py", + "sha256": "ca325367cb76a900ee9f8e53ec888e821f442563e7bc9134937b2c14015a5f67", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 1, + "row": 6649 + }, + { + "path": "deRNA.py", + "sha256": "f9ac8e16c36ac294ef3f88cc5edafa9c181f38d34060c6a8024e2f17265f4356", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 1, + "row": 6776 + }, + { + "path": "deRNA.rmd", + "sha256": "79a55733d90b26dffe1f8fa1b5d3d4aa5a895ca69f6b1e1df781feceddabd3ca", + "language": "R", + "lines": 58, + "truncated": false, + "block": 1, + "row": 10039 + }, + { + "path": "deRSNA.py", + "sha256": "9203d4571a7df9c2d992a30978ceadb47cd10b39b727aed57c54ec1be57acf4c", + "language": "Python", + "lines": 482, + "truncated": false, + "block": 1, + "row": 8949 + }, + { + "path": "deepMS.py", + "sha256": "38a20975a1ad41a1c29b83ea0e2fb291848cfcfed8c31b91de321ebfbdd2243c", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 1, + "row": 7308 + }, + { + "path": "deepvariantHeLa.py", + "sha256": "417b2f49efbc2236b0fe610df9d344769f33db17b71ca47bcf2607577adb7af4", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 1, + "row": 6407 + }, + { + "path": "deepvariantSetup.pl", + "sha256": "fd24d6d0461ac20f7b03147b48bb9e60b4da0e7f90582627f70a292cd33d3917", + "language": "Perl", + "lines": 32, + "truncated": false, + "block": 1, + "row": 4445 + }, + { + "path": "deepvariantSetup.sh", + "sha256": "02f7aa2cab63482ad7ce5746b6efaeab78c5a9ced8cb732384441f52914eaa40", + "language": "Shell", + "lines": 205, + "truncated": false, + "block": 1, + "row": 11753 + }, + { + "path": "diaNNparquet.py", + "sha256": "ec8758c3c7a6e672fc4a393426a9166bcda7eb8016407d9220b151f1e0387d1d", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 1, + "row": 6767 + }, + { + "path": "diaNNparquetSILACratio.py", + "sha256": "f9c3bf852e50e18e7c6de8ff89463d9f190dd2547b1e11eff9fe5e5798ee3d24", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 1, + "row": 6614 + }, + { + "path": "diannrunDash.py", + "sha256": "1e2f865b363d05600845ff71c962c067128318eafa0ead626c1425069bd58185", + "language": "Python", + "lines": 1616, + "truncated": false, + "block": 1, + "row": 9842 + }, + { + "path": "dict.pl", + "sha256": "7c8512fa05845b222239747761b22be303ed782d5751597d3e60bf2c12237056", + "language": "Perl", + "lines": 19, + "truncated": false, + "block": 1, + "row": 4440 + }, + { + "path": "dictprog.pl", + "sha256": "c74d0105e596a919177cea19722362659af66472daa7fa97e3def5d101909bb1", + "language": "Perl", + "lines": 32, + "truncated": false, + "block": 1, + "row": 4604 + }, + { + "path": "diffExprANOVA.jl", + "sha256": "fcaf3b4a23533fd80504088d951f5f6677d9e00875eb24d20f25446f6f52ee5e", + "language": "Julia", + "lines": 126, + "truncated": false, + "block": 1, + "row": 1603 + }, + { + "path": "diffExprANOVA.r", + "sha256": "624abf9d9ecaa102b209abb448fb36a0e639147bc70a28434504dc8d63f03eca", + "language": "R", + "lines": 164, + "truncated": false, + "block": 1, + "row": 10365 + }, + { + "path": "diffExprANOVA.rmd", + "sha256": "fb97b6f5222c9b298ab534ade395c7d72b088cd5169b69ccc2be3509c8b0cd44", + "language": "R", + "lines": 783, + "truncated": false, + "block": 1, + "row": 10603 + }, + { + "path": "diffExprBands.rmd", + "sha256": "c78b9d4884b841daf47404b1e1183c6d6f6f6ec9ae49f6e42ed491f8b1076b4e", + "language": "R", + "lines": 419, + "truncated": false, + "block": 1, + "row": 10537 + }, + { + "path": "diffExprCluster.py", + "sha256": "ac912495915b9355a6ec3ef10e4de87b95b28d66b1c96afabc05170a8271c597", + "language": "Python", + "lines": 115, + "truncated": false, + "block": 1, + "row": 7221 + }, + { + "path": "diffExprCorNet.r", + "sha256": "57bc16990c043a3ce26f4dd640871747ecc821c0c011504df68f25ebf9eaf846", + "language": "R", + "lines": 1578, + "truncated": false, + "block": 1, + "row": 10614 + }, + { + "path": "diffExprDEP.r", + "sha256": "fbc0cd45c7fd37c885c471c504aba100327f63baa94aa1b6d7e99b8ed4f288a0", + "language": "R", + "lines": 74, + "truncated": false, + "block": 1, + "row": 10208 + }, + { + "path": "diffExprDEqMS.rmd", + "sha256": "c66da18d80332d930ca88e070ed29ec5bdea72f0dd94666b78942e77ef1612b9", + "language": "R", + "lines": 274, + "truncated": false, + "block": 1, + "row": 10458 + }, + { + "path": "diffExprDIANN.py", + "sha256": "fe11b8241028d0561bbaf2f55a9b1ec88bef516daf839a3f416080b9b922a1df", + "language": "Python", + "lines": 278, + "truncated": false, + "block": 1, + "row": 8773 + }, + { + "path": "diffExprDoseCor.r", + "sha256": "e550847e8b98fdc92b88e15c694e87420cc2ba62dd89be7189f8e668cd35f785", + "language": "R", + "lines": 115, + "truncated": false, + "block": 1, + "row": 10281 + }, + { + "path": "diffExprEnrichment.rmd", + "sha256": "e73285d76bfb835c9d6ab8ee56283c55a8878364067f4f8a9959eddd7d3e3234", + "language": "R", + "lines": 1492, + "truncated": false, + "block": 1, + "row": 10612 + }, + { + "path": "diffExprML.py", + "sha256": "608eba82ef07f3ce9758007c135fe6361bc5dda7a65db957a0b18ecb07c7f716", + "language": "Python", + "lines": 3658, + "truncated": false, + "block": 1, + "row": 9870 + }, + { + "path": "diffExprML.r", + "sha256": "d76434cd96c5607a26ba8ecbb8701397353ef38e6e740823bed59dc766a04fb7", + "language": "R", + "lines": 50, + "truncated": false, + "block": 1, + "row": 10055 + }, + { + "path": "diffExprNetwork.jl", + "sha256": "48c28cbbdf05f74a08fc69824a4207a4d210ab8eb8ec3dc8d7d14f8c1728227e", + "language": "Julia", + "lines": 696, + "truncated": false, + "block": 1, + "row": 1640 + }, + { + "path": "diffExprNetwork.py", + "sha256": "e80f661414b5949d275f04cf616ee8e437f3533883914bff98e0dd2dc0c6dabc", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 1, + "row": 6909 + }, + { + "path": "diffExprNetwork.rmd", + "sha256": "d062512771b57a7298801a4ab7e2cbd1a2a78bc9a80e10b1a38dd2b9385752f9", + "language": "R", + "lines": 888, + "truncated": false, + "block": 1, + "row": 10593 + }, + { + "path": "diffExprPeptides.rmd", + "sha256": "c33d6b1181364fca28d656d8641ba975c44fd7fd8f873cb77ccd0c27067053f2", + "language": "R", + "lines": 404, + "truncated": false, + "block": 1, + "row": 10525 + }, + { + "path": "diffExprPhos.r", + "sha256": "3d20437e8999231d72d498b9a1e9d938dc4073b30a9c12e4d84865756766ed18", + "language": "R", + "lines": 106, + "truncated": false, + "block": 1, + "row": 10317 + }, + { + "path": "diffExprPlots.qmd", + "sha256": "58aa800560f30d5d3ac20916353c727248e981bb905e14c9bddf00e938848ebd", + "language": "Quarto", + "lines": 66, + "truncated": false, + "block": 1, + "row": 9888 + }, + { + "path": "diffExprPlots.r", + "sha256": "71eca88b188509216b7e097ef9fb886fbbc500aaf594042cfad5893124e4b0ec", + "language": "R", + "lines": 284, + "truncated": false, + "block": 1, + "row": 10501 + }, + { + "path": "diffExprPlots.rmd", + "sha256": "e04c162beb9963fbfaba77370db3580526300ac04194fbbaa0951c5ce0d99c05", + "language": "R", + "lines": 4332, + "truncated": false, + "block": 1, + "row": 10621 + }, + { + "path": "diffExprPlotsMetabo.rmd", + "sha256": "a78a480fab9f092337f80a513124f2a95cbce02c5727b0408ac53fa4500e2377", + "language": "R", + "lines": 45, + "truncated": false, + "block": 1, + "row": 10098 + }, + { + "path": "diffExprPool.r", + "sha256": "0508ab717b238ec92ac733a5db85a96f87e4c319953b54c3fefefa7e6bb03a61", + "language": "R", + "lines": 915, + "truncated": false, + "block": 1, + "row": 10595 + }, + { + "path": "diffExprProDA.r", + "sha256": "24880728de4c4e1453d1941564383a7e1f55dac4b10c9ef318859e1448b6159d", + "language": "R", + "lines": 74, + "truncated": false, + "block": 1, + "row": 10215 + }, + { + "path": "diffExprProlfqua.r", + "sha256": "b22ed0fea9d1a8ff1b6292d31823db62a73e105b9d63ef795b3cde476973b987", + "language": "R", + "lines": 155, + "truncated": false, + "block": 1, + "row": 10342 + }, + { + "path": "diffExprQC.r", + "sha256": "4c53d60d8e20db074f9ea4769f440b94917acacd488fdaec58fde10177b4382d", + "language": "R", + "lines": 56, + "truncated": false, + "block": 1, + "row": 10138 + }, + { + "path": "diffExprRNAseqPlot.r", + "sha256": "8ebbd99ec51233376d54dafd805c72afadf1d7f0c297fd517ac9d92a6d7fc5da", + "language": "R", + "lines": 133, + "truncated": false, + "block": 1, + "row": 10372 + }, + { + "path": "diffExprROTS.rmd", + "sha256": "4011d4b201960b20e8789537351b86833456ab72789822affb78359308254d5a", + "language": "R", + "lines": 2157, + "truncated": false, + "block": 1, + "row": 10617 + }, + { + "path": "diffExprRank.py", + "sha256": "aad8f2447161981f2e8ac62c79de9b9dbe15794228ac4f539850de1ac0f1a2eb", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 1, + "row": 5943 + }, + { + "path": "diffExprSILAC.py", + "sha256": "33ad9eacf541a45748337780a39fbe251e424d9ea7fd6dff26ab21d065ebb37a", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 1, + "row": 7273 + }, + { + "path": "diffExprSILACdiaNN.py", + "sha256": "3687abcdb270fa6abcf272b0a1bb4f49bfa5dfc4399db7a94d89eac642d21deb", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 1, + "row": 6560 + }, + { + "path": "diffExprSILACdiaNN.r", + "sha256": "f4c5b6fdfaa0a9b7893e9045331e5a8abe0293528239fddaa147dc8e8491c605", + "language": "R", + "lines": 21, + "truncated": false, + "block": 1, + "row": 10001 + }, + { + "path": "diffExprSeq.r", + "sha256": "9156418db2de017df656fbfa923154b3987b5ed3d6bb3d62212aafcc1522c2cd", + "language": "R", + "lines": 199, + "truncated": false, + "block": 1, + "row": 10451 + }, + { + "path": "diffExprSeqSingle.r", + "sha256": "840606d0b794f07d1538859885bd495ca3365b6f947cbdde2ae07dfd2429255e", + "language": "R", + "lines": 28, + "truncated": false, + "block": 1, + "row": 10104 + }, + { + "path": "diffExprStringify.py", + "sha256": "3efbfaa61fed9e8f9bbda3c964b089c10ff4ccea93a79c08115e50857d1bc010", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 1, + "row": 5642 + }, + { + "path": "diffExprTestCor.r", + "sha256": "f29d30084e1b23dae6909dee46cad97e2afe55c2dd92e12a01fb358f3d6096ec", + "language": "R", + "lines": 186, + "truncated": false, + "block": 1, + "row": 10397 + }, + { + "path": "diffExprTestLIMPA.r", + "sha256": "5bf43a8a893b31f81230c4cec348a49d2c4f89de31ebf19cf4e30f2ea4682b12", + "language": "R", + "lines": 401, + "truncated": false, + "block": 1, + "row": 10544 + }, + { + "path": "diffExprTestRank.r", + "sha256": "da2339b72e7d17e2c5ef631acbb1af5644b40795ca83a75dc3e0708088585891", + "language": "R", + "lines": 193, + "truncated": false, + "block": 1, + "row": 10416 + }, + { + "path": "diffExprTestT.r", + "sha256": "79a2c91f1a9013b14f120c852ec8ee99d74c6ef48b655fbfe41a8c0374726177", + "language": "R", + "lines": 353, + "truncated": false, + "block": 1, + "row": 10549 + }, + { + "path": "diffExprTestT1way.r", + "sha256": "e3490386976cacbf2e4a66b0a9fbb820e1c573999a1b0314ccf7edb438598f39", + "language": "R", + "lines": 168, + "truncated": false, + "block": 1, + "row": 10404 + }, + { + "path": "diffExprTestTmatrix.r", + "sha256": "6ac876658e93379820e5d4013a9f2a87b3094b40d2160bcf48311607f25ee806", + "language": "R", + "lines": 193, + "truncated": false, + "block": 1, + "row": 10453 + }, + { + "path": "diffExprTestTmatrixXL.r", + "sha256": "88331cf7741f88afa3d406c1757ff93f2521ad0073e5c87283f3bcc53d21349f", + "language": "R", + "lines": 131, + "truncated": false, + "block": 1, + "row": 10363 + }, + { + "path": "diffExprTestTmodSites.r", + "sha256": "c542ebff7af6c67e752b373192c515dfb9ed5d2054e61cef803ea1b1f35aa2ff", + "language": "R", + "lines": 172, + "truncated": false, + "block": 1, + "row": 10406 + }, + { + "path": "diffExprTestTpair.r", + "sha256": "b4352f646e7c069c4649ba9476bb7bee28278bccc21467c63b1a3a0ddd0d1605", + "language": "R", + "lines": 286, + "truncated": false, + "block": 1, + "row": 10518 + }, + { + "path": "diffExprTestTphosphoSites.r", + "sha256": "8209f22b8d37cbe251a9d3311aaeb817aae411f27256691f6596d0dd5816617b", + "language": "R", + "lines": 177, + "truncated": false, + "block": 1, + "row": 10399 + }, + { + "path": "diffExprTree.rmd", + "sha256": "b66d0f425bf553a5e92bef635447b18c4d2d098d491fba7826846a5fa9a5ad61", + "language": "R", + "lines": 99, + "truncated": false, + "block": 1, + "row": 10145 + }, + { + "path": "diffExprWSRT.m", + "sha256": "4b52ffe002815f26ad497095bdd319d7f10b30a0e278c9432595d1eb24888fa3", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 1, + "row": 2893 + }, + { + "path": "diffExprWSRT.r", + "sha256": "bf01a5504c1a6ba047531b5559b9f49afe1545162deef68516bdd8ebe2eccbf8", + "language": "R", + "lines": 37, + "truncated": false, + "block": 1, + "row": 10084 + }, + { + "path": "diffExprWSRT.rmd", + "sha256": "d6750012c6c404bfabf24b42319357e88bd3b90cd8b2b8f76e7921ec10d998bf", + "language": "R", + "lines": 1212, + "truncated": false, + "block": 1, + "row": 10605 + }, + { + "path": "diff_der.m", + "sha256": "59308a10b95a9e4a0387e842df9e18bdadcd0dffb5a164b812eef51b56e8323b", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 1, + "row": 2745 + }, + { + "path": "difflist.pl", + "sha256": "b836f13e79d55b473d6c08b75cf46404f8b2f66e12ac7f496fb1126541f4b848", + "language": "Perl", + "lines": 35, + "truncated": false, + "block": 1, + "row": 4493 + }, + { + "path": "digest.m", + "sha256": "5f1e14bd4e1309b41b375c2784d03bade889bed11cae15d637b66ebac9010dc4", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 1, + "row": 3538 + }, + { + "path": "digest.pl", + "sha256": "746a0b34bdc0ae69f39334c2eceb16b0d7f449bbf671c00b9222e0f3d99b0159", + "language": "Perl", + "lines": 35, + "truncated": false, + "block": 1, + "row": 4597 + }, + { + "path": "digestNphosphorylate.m", + "sha256": "de97c792e4f94599a378ed602f9b4db3b7624bcfc790e35c0b32289f2b3d1373", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 1, + "row": 3016 + }, + { + "path": "dijkstra_perf.m", + "sha256": "4f04e9b82bc626c2b7239591825d7ff7697fdd0c93181a0a6a05d976cdeba3c9", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 1, + "row": 2831 + }, + { + "path": "directories.pl", + "sha256": "20e9300fe730b0825d54a6c300fb343ce21f0850aebb62180657bd4f399d2d7b", + "language": "Perl", + "lines": 47, + "truncated": false, + "block": 1, + "row": 4598 + }, + { + "path": "dist_ed.pl", + "sha256": "050473938bf29f4f68a44cd88b957d9263b40925fe4c1bdf03f89e10a1926700", + "language": "Perl", + "lines": 56, + "truncated": false, + "block": 1, + "row": 4704 + }, + { + "path": "dityrosinecheck.m", + "sha256": "9d15c8a301dabe1fac5bb0fcc5499d1fc8de736cd87cc23345e80138c38146fd", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 1, + "row": 3369 + }, + { + "path": "dlage.pl", + "sha256": "79fe5a6743a93a974219f6059da7d309f6c07bee57c31f8dd9d96968c8bed6ec", + "language": "Perl", + "lines": 13, + "truncated": false, + "block": 1, + "row": 4491 + }, + { + "path": "dlfmri2csv.pl", + "sha256": "2d23dc077c1955f52b817454998df1ff9ca6ca496519be2038e99909b84ef7fa", + "language": "Perl", + "lines": 52, + "truncated": false, + "block": 1, + "row": 4684 + }, + { + "path": "dlomixRT.py", + "sha256": "da61fd742177ed73ae2835abdf2bb28b629b112f3e6da8460f94b02dde2b5282", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 1, + "row": 6766 + }, + { + "path": "dmsocompbsa.m", + "sha256": "f41d0fa1ac1b7e24fe184279cb30db99a9c2c0ae054a315dd9d8170251032fae", + "language": "MATLAB", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2627 + }, + { + "path": "down.pl", + "sha256": "5a0e5afad9f86780076dc127de46da0369ccb94955b4c72a418243cea6dab1da", + "language": "Perl", + "lines": 57, + "truncated": false, + "block": 1, + "row": 4730 + }, + { + "path": "downloadSeq.pl", + "sha256": "89f5c0e8763085d24475ec88ff6970607c6fb8d4ae30cfa6dfd9b259356eb3c3", + "language": "Perl", + "lines": 14, + "truncated": false, + "block": 1, + "row": 4396 + }, + { + "path": "download_proteome.sh", + "sha256": "a915f970100c65d5cdc97bc473c903e0806e891904c7eba45bc6e736ba1fcb8d", + "language": "Shell", + "lines": 28, + "truncated": false, + "block": 1, + "row": 11696 + }, + { + "path": "draw_contig.pl", + "sha256": "727162d7afad147b7385f2d9a3557db9ee90a9b44454e5bfdbb2d0cf6cad7f22", + "language": "Perl", + "lines": 55, + "truncated": false, + "block": 1, + "row": 4678 + }, + { + "path": "drawcontgraph.pl", + "sha256": "867426774a8415557419dbf36a1097d7e82bbfb0a9ec39d9064d6b271876a48c", + "language": "Perl", + "lines": 33, + "truncated": false, + "block": 1, + "row": 4480 + }, + { + "path": "drive.sh", + "sha256": "e2e0c0831ea06ff181c762006fc1212de2310d17fcba8d6d6545933eb3f84f5d", + "language": "Shell", + "lines": 2, + "truncated": false, + "block": 1, + "row": 11121 + }, + { + "path": "drugsynergy.m", + "sha256": "86351cf3dc3b0d06fab4d0a5cda84b122aea07e8d079b83593efbd98266c9710", + "language": "MATLAB", + "lines": 96, + "truncated": false, + "block": 1, + "row": 3264 + }, + { + "path": "ecgcpftptnr.pl", + "sha256": "9f033cec4974a4da059eb2b33408ef3ca17fc5e1f93e6a345070f38b5be38945", + "language": "Perl", + "lines": 41, + "truncated": false, + "block": 1, + "row": 4594 + }, + { + "path": "ecnametest.pl", + "sha256": "fa1a05a8cbfa237a50c840c955cbe3c6ee135dbbe830ba6ae4aa24addc78cb08", + "language": "Perl", + "lines": 35, + "truncated": false, + "block": 1, + "row": 4514 + }, + { + "path": "ecol.m", + "sha256": "6df9131b42b9cc123602c6049d5cdbfaca9de8af65d4c5637b47609918440d13", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 1, + "row": 2413 + }, + { + "path": "ecoli.m", + "sha256": "b5b1e0227f48dd4e7692163f91e2eb78deab4706cafd025fa4f6b0833cf32c50", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 1, + "row": 2535 + }, + { + "path": "ecoli1.pl", + "sha256": "2e449c2eccdf7e74ab3ae59252d29b4b41822b0cf7b4d4c9ad3825a378d7cdd8", + "language": "Perl", + "lines": 55, + "truncated": false, + "block": 1, + "row": 4731 + }, + { + "path": "ecseqannosep.pl", + "sha256": "34331cf45796668c2d926981662c8d533c94055ebb32f5c1c9a32debe2a7412b", + "language": "Perl", + "lines": 37, + "truncated": false, + "block": 1, + "row": 4559 + }, + { + "path": "ed50.r", + "sha256": "67486f8c3ca3b3700f867a037c91592fb0a9d9a8efd794b0921b1086d3ddcfd3", + "language": "R", + "lines": 56, + "truncated": false, + "block": 1, + "row": 10083 + }, + { + "path": "ed_cho.pl", + "sha256": "e3503b12cc44242f6b653168d69cb5623e761d8ffb62d5608f537c249b0c43bc", + "language": "Perl", + "lines": 48, + "truncated": false, + "block": 1, + "row": 4702 + }, + { + "path": "editcg.pl", + "sha256": "9c68a70bd998b7de5bdb742c2566e7b9d0d17a2c4c361d7068171bec75ad3f1d", + "language": "Perl", + "lines": 41, + "truncated": false, + "block": 1, + "row": 4654 + }, + { + "path": "efor1.pl", + "sha256": "94e6db842137295495ea65bbcf4fd534d2d0dc5fac2a32711d91bb00f966f58f", + "language": "Perl", + "lines": 36, + "truncated": false, + "block": 1, + "row": 4458 + }, + { + "path": "emailaLyze.py", + "sha256": "498ae143dd3efb449ae9760e41dbc0c14b568e1632f07eab911178de11817a38", + "language": "Python", + "lines": 217, + "truncated": false, + "block": 1, + "row": 8137 + }, + { + "path": "emit.pl", + "sha256": "8c069c852e38c64fd241800e4d00a1a6f713a523914e13b30ad657d89540f360", + "language": "Perl", + "lines": 109, + "truncated": false, + "block": 1, + "row": 4808 + }, + { + "path": "en_gbk.pl", + "sha256": "7e404efb38971c91780912095ee79008dc0d3a48dd3e12a508fcff8ee588c552", + "language": "Perl", + "lines": 510, + "truncated": false, + "block": 1, + "row": 4948 + }, + { + "path": "en_gbk2gbk_map2gen.pl", + "sha256": "43daf95ae213e8b2cf932b88eea139298ff86be85e08f238a967ab5de2fb6871", + "language": "Perl", + "lines": 615, + "truncated": false, + "block": 1, + "row": 4952 + }, + { + "path": "encdna.pl", + "sha256": "7f63ae599b9d91fca04d87698facd4e54d0774a6744df0f0d56a3586366ff0fa", + "language": "Perl", + "lines": 61, + "truncated": false, + "block": 1, + "row": 4560 + }, + { + "path": "entamoeba_promo.pl", + "sha256": "b1ae770a12cc6987d81c1d0c99dc68573ffb6319acb955c6dca41f127fee3e2c", + "language": "Perl", + "lines": 1334, + "truncated": false, + "block": 1, + "row": 4955 + }, + { + "path": "entropy.pl", + "sha256": "923a0c9c4315b868f8a033d4fe437efbde71d6fbcc889ad90846ea0a5d770f61", + "language": "Perl", + "lines": 67, + "truncated": false, + "block": 1, + "row": 4756 + }, + { + "path": "errorTolerance.rmd", + "sha256": "ea7ecef04d9be722d24fea3d7ed94a27302df92712a05185fabceed04a269513", + "language": "R", + "lines": 94, + "truncated": false, + "block": 1, + "row": 10103 + }, + { + "path": "est2gen.pl", + "sha256": "c004c52f090b101a2638dc63b906808d6632d1dc3e04d62baeaebacd643dcc15", + "language": "Perl", + "lines": 84, + "truncated": false, + "block": 1, + "row": 4741 + }, + { + "path": "est2gen_parallel.pl", + "sha256": "8ca66c398ae0f6a1d35a6be28800e12c548077174a2ce15e4e189253836db42b", + "language": "Perl", + "lines": 23, + "truncated": false, + "block": 1, + "row": 4451 + }, + { + "path": "euler.pl", + "sha256": "c0961d6518a923d1e9921fe768d82db67354f4f9e6a27f9531470b3bfb568741", + "language": "Perl", + "lines": 104, + "truncated": false, + "block": 1, + "row": 4852 + }, + { + "path": "eupa2015fig.m", + "sha256": "71e8ca2cc22afece1029f9e56ecd1808003090ca9d588a4d004224c9f8460975", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 1, + "row": 2927 + }, + { + "path": "evidenceIntSum.py", + "sha256": "56791e1d5c789167a0121f9347f44248828d682ce1c621db19a8cc7b03e77799", + "language": "Python", + "lines": 360, + "truncated": false, + "block": 1, + "row": 8921 + }, + { + "path": "evidencePep.py", + "sha256": "b82c46ec51438962f0093e26599ad8c0f8628bbe32cad70e368badd35c77074b", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 1, + "row": 6180 + }, + { + "path": "evidencePepMap.py", + "sha256": "02b07aea0a2047efe2b73ae740ac5915e38c6fc48848b8769eda164f45e32c10", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 1, + "row": 7120 + }, + { + "path": "evidenceQC.r", + "sha256": "9b26fb7c12936555e28130121509f926f2548af4223f114be1ad976250455223", + "language": "R", + "lines": 31, + "truncated": false, + "block": 1, + "row": 10062 + }, + { + "path": "evidenceScoreProtMap.py", + "sha256": "8548f445890643e85d8c7aec83ea2c83d53a7a513e198c3f4fb2479a70061902", + "language": "Python", + "lines": 162, + "truncated": false, + "block": 1, + "row": 8123 + }, + { + "path": "expand-list.pl", + "sha256": "26b828d3ccaeb90bffae2f8c9a78e2657559c8c10d141f5199d5a24ff18d23f7", + "language": "Perl", + "lines": 69, + "truncated": false, + "block": 1, + "row": 4690 + }, + { + "path": "experimentaldata1.pl", + "sha256": "3ae7b55a14134d7652eaa260bdabebe9ec0ba04d11e473870b3d05d311e4e1a0", + "language": "Perl", + "lines": 46, + "truncated": false, + "block": 1, + "row": 4708 + }, + { + "path": "expressionGOvenn.rmd", + "sha256": "af81c81c89b7e3180b6fc26abe85562f8d828ae4ca4be52557fed69f63e53c92", + "language": "R", + "lines": 97, + "truncated": false, + "block": 1, + "row": 10136 + }, + { + "path": "expressionTree.r", + "sha256": "e8379d388088cef67f6ffa19ad82c77f401d75db3044dddeb311a8664d9968c2", + "language": "R", + "lines": 104, + "truncated": false, + "block": 1, + "row": 10230 + }, + { + "path": "ext_siglist.pl", + "sha256": "a744369e179dbb234d7d47f9424be52bdc6b4ae26e9dd7439203c928fb818be4", + "language": "Perl", + "lines": 140, + "truncated": false, + "block": 1, + "row": 4863 + }, + { + "path": "ext_wm.pl", + "sha256": "9f260eb0c49e66deadffc2ee30f7dfbfdb3129af2e1c956dd91c83529b2a72e0", + "language": "Perl", + "lines": 138, + "truncated": false, + "block": 1, + "row": 4872 + }, + { + "path": "extftrfromall.pl", + "sha256": "6542fc986efe1d9d05a81e64bf8c5fc65c1ab2f521655f155eb813e9495b6c95", + "language": "Perl", + "lines": 63, + "truncated": false, + "block": 1, + "row": 4627 + }, + { + "path": "extracseq.pl", + "sha256": "1164b72016a761349d28f22ada815324ddaea58e599e03934681d7ab1ee987cf", + "language": "Perl", + "lines": 11, + "truncated": false, + "block": 1, + "row": 4416 + }, + { + "path": "extractGTFseqMutate.pl", + "sha256": "7b3c7ebee74c779718539cec0d1700be701afc2f8b5d0ea4d62282c5033b3828", + "language": "Perl", + "lines": 102, + "truncated": false, + "block": 1, + "row": 4861 + }, + { + "path": "extract_cds.pl", + "sha256": "8c84b0c57639eccb84b374e7bac962c86edbac2e9814a65583188d7c134aeefa", + "language": "Perl", + "lines": 30, + "truncated": false, + "block": 1, + "row": 4531 + }, + { + "path": "extract_rat_map_ids.pl", + "sha256": "9762ecfd9a66c956a74f0c078cee62248f33f8c5bf9026964c59a008f26df227", + "language": "Perl", + "lines": 66, + "truncated": false, + "block": 1, + "row": 4792 + }, + { + "path": "extractgnipa.pl", + "sha256": "6fe2cc0847af7322115cc308508949e07f863b6e43921009bbdebfb13320b624", + "language": "Perl", + "lines": 87, + "truncated": false, + "block": 1, + "row": 4834 + }, + { + "path": "extractseq.pl", + "sha256": "99e68ba26bf91851fc41d0c00829f0f8016a592ae4de01fe890e5a208345e332", + "language": "Perl", + "lines": 53, + "truncated": false, + "block": 1, + "row": 4603 + }, + { + "path": "extscf.pl", + "sha256": "a8e9455ec3e6fdc8c2e68e6a0646279bee3a21c7372c7f23ed1cad671b74750c", + "language": "Perl", + "lines": 60, + "truncated": false, + "block": 1, + "row": 4636 + }, + { + "path": "extss.pl", + "sha256": "773d7766ddf0e83189527d7d82de3837f4a16a42e87a299638243518db3f1d28", + "language": "Perl", + "lines": 39, + "truncated": false, + "block": 1, + "row": 4599 + }, + { + "path": "faTail.nb", + "sha256": "c1c79550e185cb31698b1872374796b0bc814987bc497b6ca20005d8e8ed597e", + "language": "Mathematica", + "lines": 26, + "truncated": false, + "block": 1, + "row": 4365 + }, + { + "path": "fal1.r", + "sha256": "029698d25f5cbe42e7b5a29fb21beb715426247856a24acaa07d4b9f311d53e8", + "language": "R", + "lines": 104, + "truncated": false, + "block": 1, + "row": 10170 + }, + { + "path": "fas2pair.pl", + "sha256": "cc5672db6787e5efec033471f4f5060b46885139464ba44efaf78ef45a86779d", + "language": "Perl", + "lines": 95, + "truncated": false, + "block": 1, + "row": 4785 + }, + { + "path": "fas2readvl.pl", + "sha256": "778ebd33c7747df84dbbfe6def0f001acd074ebb6150988e418bc7d75660d73b", + "language": "Perl", + "lines": 89, + "truncated": false, + "block": 1, + "row": 4772 + }, + { + "path": "fas2tablen.pl", + "sha256": "0a154661549b3db8b10fb2677981061cc3cf3cff773fd6621374e4a589405b5b", + "language": "Perl", + "lines": 56, + "truncated": false, + "block": 1, + "row": 4607 + }, + { + "path": "fasseqformatter1.pl", + "sha256": "5061f1da45a95daecaa211537c82604828ba951c01a0f124ee82699b6026ddb6", + "language": "Perl", + "lines": 42, + "truncated": false, + "block": 1, + "row": 4666 + }, + { + "path": "fasta454tofrg.pl", + "sha256": "ff6f6fd5e8d93e2149ab06b93deb5594c6206a4ba0e7d1411a717c6232003647", + "language": "Perl", + "lines": 32, + "truncated": false, + "block": 1, + "row": 4481 + }, + { + "path": "fastaHeaderUniprot.py", + "sha256": "e7b9e9d99c5e8f470bb21bffa522068f08d7fe6669178e32993924e202ba2660", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 1, + "row": 5965 + }, + { + "path": "fastaUniq.pl", + "sha256": "8fa654e0e50d96b5e9d846c861db3f11f40b5f43a7da11878c162e453dca9c6e", + "language": "Perl", + "lines": 75, + "truncated": false, + "block": 1, + "row": 4800 + }, + { + "path": "fastqUniq.pl", + "sha256": "82ab65f0f18e07d34027241e2af645329a2c2fb8ab7a7cb7039da546f307ba95", + "language": "Perl", + "lines": 77, + "truncated": false, + "block": 1, + "row": 4751 + }, + { + "path": "fcm.c", + "sha256": "826de2c5eacc4223ba5c8ba96b31b107f60f644d3d3bd10b706ce1e56406eb33", + "language": "C", + "lines": 363, + "truncated": false, + "block": 1, + "row": 98 + }, + { + "path": "fft.pl", + "sha256": "b3d92d5f3978e348f67efc9dced58e9007dd24b25b1a04d1db91f6142b6f8a2c", + "language": "Perl", + "lines": 141, + "truncated": false, + "block": 1, + "row": 4859 + }, + { + "path": "fft_to_image.c", + "sha256": "f29afe348e16ed75bc549b20b71ccf80c28005ee9e0728ecd592de88c3d62515", + "language": "C", + "lines": 136, + "truncated": false, + "block": 1, + "row": 32 + }, + { + "path": "ffteg.m", + "sha256": "0818ba67c1967fd72dd15310c096050e7b273463674dd008b9abb276b3e5f587", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 1, + "row": 2752 + }, + { + "path": "ficdsconcat.pl", + "sha256": "8f9d70fc834c3b8652bc6920cff6b08964cbd65a1f76788acf8115a0862096bf", + "language": "Perl", + "lines": 153, + "truncated": false, + "block": 1, + "row": 4838 + }, + { + "path": "fig.pl", + "sha256": "96594c1347fe11965625454c028e4924ac63d93650676296724d3221cc2620ec", + "language": "Perl", + "lines": 20, + "truncated": false, + "block": 1, + "row": 4412 + }, + { + "path": "figeno.sh", + "sha256": "eaf73daad7224e151bac4dc4e786c00c09ad85d41f4622202e95342feef13bd0", + "language": "Shell", + "lines": 12, + "truncated": false, + "block": 1, + "row": 11251 + }, + { + "path": "fileformofs.pl", + "sha256": "a52726f818d527b6279d5b9d82a6a8353c3977a88cea55b2a5f9538937b4fecf", + "language": "Perl", + "lines": 45, + "truncated": false, + "block": 1, + "row": 4646 + }, + { + "path": "filelength.pl", + "sha256": "444b7793aee4bf2ac4b4d17afe04665d013b3c008f7ccc555b994058bacd1049", + "language": "Perl", + "lines": 14, + "truncated": false, + "block": 1, + "row": 4378 + }, + { + "path": "filesep.pl", + "sha256": "f9ea6b8269a9ad777775b3eaeb074f2279723d839f0e832816db65ace25c0771", + "language": "Perl", + "lines": 56, + "truncated": false, + "block": 1, + "row": 4710 + }, + { + "path": "filterFasta.pl", + "sha256": "690d4e70164632e6a1eebf473bbe63997de44318939838527798cf030265da43", + "language": "Perl", + "lines": 31, + "truncated": false, + "block": 1, + "row": 4556 + }, + { + "path": "finDups.py", + "sha256": "41c04bacefa66cfea7c878630c72c2785bb1323c7366cd5eea67ca04c9e1d6c5", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 1, + "row": 7060 + }, + { + "path": "finalassn.pl", + "sha256": "25977044891f8e544ba8b35d088498f7d7202c9a30ad3abe100c10539bfc550d", + "language": "Perl", + "lines": 152, + "truncated": false, + "block": 1, + "row": 4835 + }, + { + "path": "findKEGGcompoundID.pl", + "sha256": "3e3b948785b1af0045fcc3b4336aaea99ada51a82e500f03c8ada3ee99858ae8", + "language": "Perl", + "lines": 9, + "truncated": false, + "block": 1, + "row": 4391 + }, + { + "path": "findProtein.pl", + "sha256": "c7e1d65666952401a64aa881be3ce5e7b9aa2326bc9e2729e9e45812825f12cc", + "language": "Perl", + "lines": 32, + "truncated": false, + "block": 1, + "row": 4538 + }, + { + "path": "findconseq.pl", + "sha256": "dd33da88996392fc011cd2ec1282a741a89a19a0756aa78f59745841e16b89a9", + "language": "Perl", + "lines": 94, + "truncated": false, + "block": 1, + "row": 4805 + }, + { + "path": "finsol.m", + "sha256": "2bd8100ada67c1db5c5d7bd519a26f5bea6ad9d9f15471de249b2115022a9fc8", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 1, + "row": 2669 + }, + { + "path": "fiplasintergenic.pl", + "sha256": "3bd7cb8c9f8e02c965a877ced9d7be63f46132ca994e58ac2d2a377f7f876038", + "language": "Perl", + "lines": 142, + "truncated": false, + "block": 1, + "row": 4905 + }, + { + "path": "fix-maps.sh", + "sha256": "6f475ba9e028a02d30e000a71ffb33ff39d3ab39248e8f58ff3c39b333987017", + "language": "Shell", + "lines": 31, + "truncated": false, + "block": 1, + "row": 11178 + }, + { + "path": "flashDeConvMZMS1.r", + "sha256": "1815ebbc4889a7b67cf20c2f91419972fe992bcde0c47c3cf355a809a9c2225f", + "language": "R", + "lines": 91, + "truncated": false, + "block": 1, + "row": 10268 + }, + { + "path": "flexdashboard.rmd", + "sha256": "99b3a9d16fc1dae9db11f2a3e93ce0cd820e3d74d6b32a2a1d17ea224be27536", + "language": "R", + "lines": 128, + "truncated": false, + "block": 1, + "row": 10143 + }, + { + "path": "flow-blast-ml.pl", + "sha256": "86c61ef6e0ff5cd5e645343bc7828f891e70dd503aced3ea77025a39c387d5e9", + "language": "Perl", + "lines": 323, + "truncated": false, + "block": 1, + "row": 4939 + }, + { + "path": "fmrivol.m", + "sha256": "ed435b733b1fe0156f5b759303ece5e3bf4567a35f459519413d0e6ff3d6e886", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 1, + "row": 2710 + }, + { + "path": "formatsvmres.pl", + "sha256": "5d3e5fecc05aaf1a97948a6a72cee387ce0fb748cf68d9e49586974bd2cb8789", + "language": "Perl", + "lines": 35, + "truncated": false, + "block": 1, + "row": 4570 + }, + { + "path": "fprunHF.sh", + "sha256": "e538c07dc0f741ce6e5d7bb5bf8ea08f372f2e6ec6e24a7d36bf67085457af87", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11654 + }, + { + "path": "fprunTTP.dl.sh", + "sha256": "e8c7e16f7e2dcaaee08214409af8676a80e4e544bf05df81f1a63a5fd4d70385", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11675 + }, + { + "path": "fprunTTP.sh", + "sha256": "f719518fd5d885ded1ff410a8151cba8d85160f187fece165c93329d48799066", + "language": "Shell", + "lines": 32, + "truncated": false, + "block": 1, + "row": 11711 + }, + { + "path": "fragger.sh", + "sha256": "05e1e9ea28e8648a293b8ab893ec6c97e2ef65988b573cf7919b5c1d6e24cc35", + "language": "Shell", + "lines": 398, + "truncated": false, + "block": 1, + "row": 11756 + }, + { + "path": "frb.pl", + "sha256": "2a881daac6598d97b903fcd004a159d0816412b7099fcf7c21c62d1e4c2954af", + "language": "Perl", + "lines": 451, + "truncated": false, + "block": 1, + "row": 4946 + }, + { + "path": "frg2fas.pl", + "sha256": "c3502446c3a3cc5413ba9207a4c553d701d056945f0277f42c18003a9f98bbce", + "language": "Perl", + "lines": 19, + "truncated": false, + "block": 1, + "row": 4431 + }, + { + "path": "fse_tr.pl", + "sha256": "90006df5e6bd86c9df0b2d2e19e38e91ebbfa3a6f26777ba41937ff6168ed84a", + "language": "Perl", + "lines": 1282, + "truncated": false, + "block": 1, + "row": 4954 + }, + { + "path": "ftXML.pl", + "sha256": "efd235243bf5b6a1ddf95c6142fee42cc83fd4fdd82e08dea9ee21b416493f9d", + "language": "Perl", + "lines": 82, + "truncated": false, + "block": 1, + "row": 4795 + }, + { + "path": "ftexome.pl", + "sha256": "a21eb534ae6e957c02f84b40374a30c62984ef0c6c2d8088252f4975041fe3c2", + "language": "Perl", + "lines": 122, + "truncated": false, + "block": 1, + "row": 4853 + }, + { + "path": "ftn.pl", + "sha256": "bd38298e77cab776446119ade3ceca9d0f7419af1aeb7756968356f2d058f24a", + "language": "Perl", + "lines": 65, + "truncated": false, + "block": 1, + "row": 4776 + }, + { + "path": "ftseq.pl", + "sha256": "7e792849fa6e3c8dc00ecba56f6bc74ec2e29e14d9290ed6dd7e10b89ff65f19", + "language": "Perl", + "lines": 218, + "truncated": false, + "block": 1, + "row": 4923 + }, + { + "path": "fuzzy_c_means.pl", + "sha256": "40b9c462ed77580681e01dff6290b77f2926c3acec4f7cccda638558f7207282", + "language": "Perl", + "lines": 460, + "truncated": false, + "block": 1, + "row": 4947 + }, + { + "path": "gatc.pl", + "sha256": "212e228d1b8e49b94548e97f14ae864661f521fc64bc8746daa91af5710965a6", + "language": "Perl", + "lines": 157, + "truncated": false, + "block": 1, + "row": 4882 + }, + { + "path": "gatc.r", + "sha256": "51cfdecb2722842466dd912ca769c20709c729fba79d035bb07b952f62b89fd2", + "language": "R", + "lines": 37, + "truncated": false, + "block": 1, + "row": 10007 + }, + { + "path": "gatcdensity.r", + "sha256": "4f6c2653aae0b3b299dbd5cfcf2cf46c02f9bb0521407e721e68fddd2cc4bd19", + "language": "R", + "lines": 61, + "truncated": false, + "block": 1, + "row": 10161 + }, + { + "path": "gatcdist.pl", + "sha256": "cbae865aa5c361d506b10a0168ae52dbc3fc0d94b3a1d5c68842c0a3e0caed27", + "language": "Perl", + "lines": 29, + "truncated": false, + "block": 1, + "row": 4475 + }, + { + "path": "gatcsnp.pl", + "sha256": "00ab3e00323a6b47db7e968ef00970401170dfa0c8816bd54b888a35cb4ee4e7", + "language": "Perl", + "lines": 22, + "truncated": false, + "block": 1, + "row": 4403 + }, + { + "path": "gb.pl", + "sha256": "a10aa5146e4184922a34b73f05699edff73c6f4e76d1d18bdc6cc928b7591182", + "language": "Perl", + "lines": 118, + "truncated": false, + "block": 1, + "row": 4833 + }, + { + "path": "gb2fas.pl", + "sha256": "dd90c49bb79b4f5a4fee874d4d5e65edee4ed750f1a1914b4052b0801f9feab1", + "language": "Perl", + "lines": 43, + "truncated": false, + "block": 1, + "row": 4624 + }, + { + "path": "gb_to_gff.pl", + "sha256": "d01665bdd12f4cf33a06c9f6abb87a762aabb25e42dadb69741af21b88d50f4c", + "language": "Perl", + "lines": 38, + "truncated": false, + "block": 1, + "row": 4648 + }, + { + "path": "gbk2fas_454.pl", + "sha256": "6cb69e0199bb0185d3a384465286880750ab8f7d4e6f2350ee7b05dc4515fd6f", + "language": "Perl", + "lines": 59, + "truncated": false, + "block": 1, + "row": 4711 + }, + { + "path": "gbk2fas_edena.pl", + "sha256": "612d0beb1c7ac5af2814814b9271de4dc1ab0ba3702013e7ab1457e658691895", + "language": "Perl", + "lines": 48, + "truncated": false, + "block": 1, + "row": 4659 + }, + { + "path": "gbk2fas_splitter.pl", + "sha256": "60706d0e485818761d99d3ef333984b4ab79dd7fd698b85123cada393a20d3e4", + "language": "Perl", + "lines": 60, + "truncated": false, + "block": 1, + "row": 4763 + }, + { + "path": "gbk2fasta.pl", + "sha256": "38e7914bbbf9a555a4901b2935b01d129e51a7c855d0c346cd04f0ac46a16abc", + "language": "Perl", + "lines": 46, + "truncated": false, + "block": 1, + "row": 4637 + }, + { + "path": "gbkcds2fas.pl", + "sha256": "6db9df9674022167bddbfd4d0b075021902b52153d0766488153635035286311", + "language": "Perl", + "lines": 149, + "truncated": false, + "block": 1, + "row": 4917 + }, + { + "path": "gc.pl", + "sha256": "521b7875127abbc92329ba39c4cc7ceba7b2cc3d098f087ede54867e19e504ce", + "language": "Perl", + "lines": 44, + "truncated": false, + "block": 1, + "row": 4546 + }, + { + "path": "gc5cdfd.pl", + "sha256": "66221ab2e0821573aca66817b6c155ab1243a39a59c54798fb2e2ab1f02ccf0d", + "language": "Perl", + "lines": 24, + "truncated": false, + "block": 1, + "row": 4625 + }, + { + "path": "gc8gcdown.pl", + "sha256": "c05d7619e510ddbac7b73c858cdee095184a2a0fff32b97b20c3fde3916e8c53", + "language": "Perl", + "lines": 24, + "truncated": false, + "block": 1, + "row": 4620 + }, + { + "path": "gcco.pl", + "sha256": "807672bb158874dcaa965cebdcbcfe6cf652252aaa6680cf6226e5422ea7c923", + "language": "Perl", + "lines": 23, + "truncated": false, + "block": 1, + "row": 4436 + }, + { + "path": "gcd.pl", + "sha256": "b683cda239d42776e30cb55e3b69023f340cfcac3efe60b2a6b1fa87fec7294a", + "language": "Perl", + "lines": 88, + "truncated": false, + "block": 1, + "row": 4688 + }, + { + "path": "gclencalc.pl", + "sha256": "f15aeaa5f337040cd9c1adec05ca5a43d3817ccb510c5bfea482b5b6de6bd82c", + "language": "Perl", + "lines": 41, + "truncated": false, + "block": 1, + "row": 4618 + }, + { + "path": "gcmain.pl", + "sha256": "2e82f0a3ab1404d15bbebeefcf61b689fea99870a778cfb787f7aea5d4d14748", + "language": "Perl", + "lines": 43, + "truncated": false, + "block": 1, + "row": 4706 + }, + { + "path": "gd1.pl", + "sha256": "a5d846a1e147de53a22e614ec745bffe8fa59da5e08d5e995b17028248c9b5b7", + "language": "Perl", + "lines": 30, + "truncated": false, + "block": 1, + "row": 4579 + }, + { + "path": "gel2dsim.m", + "sha256": "3cdb87e8bcc84c2b78881b9dd6040a9c9481f654140433f0271265545433251c", + "language": "MATLAB", + "lines": 194, + "truncated": false, + "block": 1, + "row": 3717 + }, + { + "path": "gen454pair.pl", + "sha256": "612a4bc1d9b9e62263ccbbee8dccc65f586ff51ea12aa4a1e6b4609ac6c2e396", + "language": "Perl", + "lines": 112, + "truncated": false, + "block": 1, + "row": 4777 + }, + { + "path": "genDepth.sh", + "sha256": "a636b7d69698dd2b9cc5f741c87acf59dee67f3b9fee6016456eeee1109f9235", + "language": "Shell", + "lines": 9, + "truncated": false, + "block": 1, + "row": 11393 + }, + { + "path": "genListPRM.py", + "sha256": "52173f8065379a2dbab34c157d77d979d1789191f35a6cd510eb570267762426", + "language": "Python", + "lines": 309, + "truncated": false, + "block": 1, + "row": 9504 + }, + { + "path": "genMotif.pl", + "sha256": "5a66a02df46651a6f14df8160601693f7f7e6dcfe6ceff4f0318a5955f57d485", + "language": "Perl", + "lines": 94, + "truncated": false, + "block": 1, + "row": 4801 + }, + { + "path": "genPRM.py", + "sha256": "650e759cbeffa120422637733b0db813af33566e4cd74644b69d4e1bbc860867", + "language": "Python", + "lines": 213, + "truncated": false, + "block": 1, + "row": 8520 + }, + { + "path": "gen_input.R", + "sha256": "d93eae2ff381d3a9264ac755f37a800782a4f3c51b8bc89ff33793a5b3dc0614", + "language": "R", + "lines": 98, + "truncated": false, + "block": 1, + "row": 10262 + }, + { + "path": "gene2proteinKmerCnt.pl", + "sha256": "e06b24ab9a87679ddf9784372aa3b16bbeb8413ac4e8709234be39ad69969150", + "language": "Perl", + "lines": 112, + "truncated": false, + "block": 1, + "row": 4831 + }, + { + "path": "geneExprTest.r", + "sha256": "7b5d90f3017ea5915ce7aafcdd063314770a123d38d10493c7b05141194bbb09", + "language": "R", + "lines": 360, + "truncated": false, + "block": 1, + "row": 10556 + }, + { + "path": "geneExpressions.pl", + "sha256": "d043d5990cfbb3ada80927fadd215d8d20358493208da31779ebb5ca01385913", + "language": "Perl", + "lines": 68, + "truncated": false, + "block": 1, + "row": 4807 + }, + { + "path": "geneGroupsCombineDIANN.py", + "sha256": "0880dea769f10b735be13f6c145de1ae439f6dce7fd02865999e18386adbe80e", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 1, + "row": 6347 + }, + { + "path": "geneGroupsQC.r", + "sha256": "79e957a87c8e0e9c14b576eef07d54400c54e86b0a90bc8f6971454db7164875", + "language": "R", + "lines": 57, + "truncated": false, + "block": 1, + "row": 10129 + }, + { + "path": "generate.sh", + "sha256": "1834502754dc94bddb63919f53467402a7b899e66ef12c9907b51911a9530815", + "language": "Shell", + "lines": 28, + "truncated": false, + "block": 1, + "row": 11403 + }, + { + "path": "generate_csv_graph_file.pl", + "sha256": "3a6bafcd1f0fcc6672a473a3f9e87f1d0c6c28cfbdefc278e89f523ecca7f82b", + "language": "Perl", + "lines": 62, + "truncated": false, + "block": 1, + "row": 4551 + }, + { + "path": "generate_reg_file.pl", + "sha256": "3d428f71fe3effce12f83f73f4a79dd6fc0831be3ac86c2dd001c51033b14bfb", + "language": "Perl", + "lines": 122, + "truncated": false, + "block": 1, + "row": 4822 + }, + { + "path": "generate_wxs.pl", + "sha256": "47e35b1770b7c98b4112b32dee82aab36c1a0ed5d4e80cb9b85b0cb1047a67e3", + "language": "Perl", + "lines": 200, + "truncated": false, + "block": 1, + "row": 4904 + }, + { + "path": "genescancutter.pl", + "sha256": "e050c9d1f1c9b0914c1209e312e4f7d9a1f03222a0cc7d14beef7d0c85a0ef03", + "language": "Perl", + "lines": 54, + "truncated": false, + "block": 1, + "row": 4683 + }, + { + "path": "genescansub.pl", + "sha256": "05d811938853ec4a997c1674eb90dd671f5d0c10b7213a8fcb45d1ee7d3ab314", + "language": "Perl", + "lines": 70, + "truncated": false, + "block": 1, + "row": 4739 + }, + { + "path": "geneview.pl", + "sha256": "6b56d7db62ddc5c42ff40613ec5e4addc4090e763d3b5007158f0c6a9c2aa4eb", + "language": "Perl", + "lines": 137, + "truncated": false, + "block": 1, + "row": 4837 + }, + { + "path": "genlink.pl", + "sha256": "97110cb2f52fd42be47adb432e0b2818bd7e6b67ef6347e1d3e9e8abdcd226eb", + "language": "Perl", + "lines": 34, + "truncated": false, + "block": 1, + "row": 4630 + }, + { + "path": "genloc.pl", + "sha256": "d2a02c6700dbb86a9e2f66d4d9fd81db2b842b6b96c81ecffd87cc4633daee05", + "language": "Perl", + "lines": 26, + "truncated": false, + "block": 1, + "row": 4658 + }, + { + "path": "genmap.pl", + "sha256": "d95de5afd85c42e66386b0aa3e465239a13564f49d29e4b888037f0c7b1a2301", + "language": "Perl", + "lines": 518, + "truncated": false, + "block": 1, + "row": 4949 + }, + { + "path": "genmova.sh", + "sha256": "6ca33da0c1076020a0a8fd512277e0ef23cd7ec271c5fbab4fccbb757bef8f02", + "language": "Shell", + "lines": 163, + "truncated": false, + "block": 1, + "row": 11727 + }, + { + "path": "genomalign.m", + "sha256": "fc5f51a73babef86534a53bfe460ab99290f6e1b6a14a88c9f5363e7801897cd", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 1, + "row": 2365 + }, + { + "path": "genomeChart.py", + "sha256": "4232c70b1cc3a4f64b865a748fada43190aa5467a33e864ff40db9e5bd693447", + "language": "Python", + "lines": 190, + "truncated": false, + "block": 1, + "row": 7933 + }, + { + "path": "genomeTranslate.py", + "sha256": "23699f726ccef97c7078138cc7717d662c5f32515e101446495866da9f731fab", + "language": "Python", + "lines": 709, + "truncated": false, + "block": 1, + "row": 9545 + }, + { + "path": "genpairfromcont.pl", + "sha256": "de8e056216397552bd59d710657df8c350a09c2b57b4d8ee4709f50b9507136a", + "language": "Perl", + "lines": 96, + "truncated": false, + "block": 1, + "row": 4826 + }, + { + "path": "genpairlib.pl", + "sha256": "5f9969382ea46bf4682411ff8d8cc89388a96b194cf13fb01d82238afc5c0adc", + "language": "Perl", + "lines": 51, + "truncated": false, + "block": 1, + "row": 4631 + }, + { + "path": "genscanriceout.pl", + "sha256": "3efbd34c4d0bb81b2ebe52cf3a6788bfa9533756b66f3c5a03c5a7396a733dcb", + "language": "Perl", + "lines": 44, + "truncated": false, + "block": 1, + "row": 4721 + }, + { + "path": "genssplitter1.pl", + "sha256": "ae6c69e75213b1625129a0fa9a5fbe330b4cd1236b7310268e79188fd08b1237", + "language": "Perl", + "lines": 225, + "truncated": false, + "block": 1, + "row": 4910 + }, + { + "path": "genstock.pl", + "sha256": "4e748f69260e12d9fa33d1caa077151597d37186795fa50623811bb480f0882e", + "language": "Perl", + "lines": 22, + "truncated": false, + "block": 1, + "row": 4447 + }, + { + "path": "gentune.sh", + "sha256": "06bf4b82513f8b08d45af264e41e642507cec64eb16429919c8e0e880782253b", + "language": "Shell", + "lines": 12, + "truncated": false, + "block": 1, + "row": 11169 + }, + { + "path": "get-chromosomes.pl", + "sha256": "dd633b273317d21dbbb5514ec52f567c2c75965684af5911df920597aecfe0e1", + "language": "Perl", + "lines": 29, + "truncated": false, + "block": 1, + "row": 4510 + }, + { + "path": "get-freq.pl", + "sha256": "c3d0f3741ebf3b70cc23ff98b86559edcbb2475e287685d1e90ebf4a24ea6ddb", + "language": "Perl", + "lines": 33, + "truncated": false, + "block": 1, + "row": 4736 + }, + { + "path": "get-group.pl", + "sha256": "3e2bc9bd8ec90a8e096428d0c19dbb73b0cdf7de64dbc4835165158f20a961c9", + "language": "Perl", + "lines": 29, + "truncated": false, + "block": 1, + "row": 4504 + }, + { + "path": "get-orth-zf.pl", + "sha256": "1e1a4d81c15c4f6bcefc1a28b2e851056b2a981583aa576972db9c1e286f64c6", + "language": "Perl", + "lines": 48, + "truncated": false, + "block": 1, + "row": 4719 + }, + { + "path": "get-region.pl", + "sha256": "addd930e30fd0eb3c77e6ee10c476528bb992d4beed3fc46105c7c9b64e97c07", + "language": "Perl", + "lines": 29, + "truncated": false, + "block": 1, + "row": 4494 + }, + { + "path": "get-regional-gene.pl", + "sha256": "bf5a83f708a45d39996a104c68f4641d36565a3ed1c67348546c6119d8095f7e", + "language": "Perl", + "lines": 124, + "truncated": false, + "block": 1, + "row": 4871 + }, + { + "path": "get-regional-seq.pl", + "sha256": "33e8be786d1f9a2b73ab6702c2bb39df3883977de9472d4deafeb3453898102f", + "language": "Perl", + "lines": 64, + "truncated": false, + "block": 1, + "row": 4762 + }, + { + "path": "get-scaffold.pl", + "sha256": "00f396633ceef61b237f8bc9aab850d4042e7cb1ad0015727ae9978105cc0e0e", + "language": "Perl", + "lines": 29, + "truncated": false, + "block": 1, + "row": 4506 + }, + { + "path": "get-syn-salmIg.pl", + "sha256": "edc41e512039600ce7f9baefc2f305cfc296ec09bc41c90502a01d22f1e7d3f3", + "language": "Perl", + "lines": 84, + "truncated": false, + "block": 1, + "row": 4854 + }, + { + "path": "get-syn-salmIgL.pl", + "sha256": "873725417a917831b1f86c2f947edec8fece0861a4f881e67bc74bd4f2fb5cb8", + "language": "Perl", + "lines": 88, + "truncated": false, + "block": 1, + "row": 4869 + }, + { + "path": "get-syn.pl", + "sha256": "fae0c2807c954297a32179dc2c5d3d1a9db1b24669e8ee0c2edc38865d51273f", + "language": "Perl", + "lines": 64, + "truncated": false, + "block": 1, + "row": 4794 + }, + { + "path": "get.pl", + "sha256": "b35b996c05e102430c5350fdeea969d7d720a86e94fdbfe6bb1b9d014796780e", + "language": "Perl", + "lines": 30, + "truncated": false, + "block": 1, + "row": 4492 + }, + { + "path": "get.sh", + "sha256": "1393dfc8d129ba22c43d16e4f953383f216010f206c6a8479069f1960549a78d", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11151 + }, + { + "path": "getClasses.pl", + "sha256": "694af5e1dc51130a3cff5eff50bcac32eeedef4d21f85d5f9efde8ae12e300f7", + "language": "Perl", + "lines": 14, + "truncated": false, + "block": 1, + "row": 4395 + }, + { + "path": "getConservationScores.pl", + "sha256": "05eec7a8746b3aad326cfc4366dde55f9b46a7c5bcec8c5bfec1986afb44be98", + "language": "Perl", + "lines": 54, + "truncated": false, + "block": 1, + "row": 4755 + }, + { + "path": "getData.r", + "sha256": "ed72a0ff3345001087cbc9f001d045893c938c016a99c60b7c7b453d0627f5da", + "language": "R", + "lines": 8, + "truncated": false, + "block": 1, + "row": 9906 + }, + { + "path": "getEnsemblData.pl", + "sha256": "9b951d9bad0941bbf64c1dc95ed94785865922cdc684c75b6fa08e01788f67d9", + "language": "Perl", + "lines": 121, + "truncated": false, + "block": 1, + "row": 4855 + }, + { + "path": "getFastaIDsoap.pl", + "sha256": "c0d2b52a9f8b8ae573863cab599d5219f3cf283e61f053b5707e27d5917bdbf3", + "language": "Perl", + "lines": 75, + "truncated": false, + "block": 1, + "row": 4757 + }, + { + "path": "getGRK.pl", + "sha256": "3b40dde3d646893c53ca966f3f527efd26514ce734924749b56c007b7bfb9559", + "language": "Perl", + "lines": 65, + "truncated": false, + "block": 1, + "row": 4818 + }, + { + "path": "getGenBank.pl", + "sha256": "cd91facced69877a8ee3311cb41f0a0b0fa95af61fb5fda3b7dd9261db278b61", + "language": "Perl", + "lines": 29, + "truncated": false, + "block": 1, + "row": 4483 + }, + { + "path": "getGeneCounts.m", + "sha256": "555d50fa3871875948e64e3b59d13365800fdaad9999676be1cbae19fa82dacd", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 1, + "row": 2920 + }, + { + "path": "getHgnc.pl", + "sha256": "7a36a6ac40d286e05198ed5896cb706b88752769d8c75670cbc4d1a65baf3a0f", + "language": "Perl", + "lines": 15, + "truncated": false, + "block": 1, + "row": 4524 + }, + { + "path": "getNA.pl", + "sha256": "96167f84a193e75dac2c8737ccb0f0472558315ea823ec9e72cef47dc64132a8", + "language": "Perl", + "lines": 71, + "truncated": false, + "block": 1, + "row": 4662 + }, + { + "path": "getRand.c", + "sha256": "88c67dbe011d6805435b6e0c8522a056fb2b7902ec1bd051aa2c61730e8c87b6", + "language": "C", + "lines": 21, + "truncated": false, + "block": 1, + "row": 4 + }, + { + "path": "getTracks.pl", + "sha256": "85fef128c05803c5cb57918f38d5f88f46656e2422b11f0683d2a42e7d3a5e0e", + "language": "Perl", + "lines": 35, + "truncated": false, + "block": 1, + "row": 4537 + }, + { + "path": "getUPIforAccession_soap.pl", + "sha256": "d21923880e3e05f0a26ac570009a3ec720aa7493535bfd98100cce5eeb273e54", + "language": "Perl", + "lines": 101, + "truncated": false, + "block": 1, + "row": 4814 + }, + { + "path": "get_all_core_databases_from_2staging_servers.pl", + "sha256": "4a5be27674f66d7484dafd9771a72a36ff24b5ae74cd65ebc26a0168f58dc712", + "language": "Perl", + "lines": 28, + "truncated": false, + "block": 1, + "row": 4527 + }, + { + "path": "get_contig.pl", + "sha256": "4d979b10d59b47a76273e2441253fd42e7654a1d623ddbafc217d1cd3c9ed0f8", + "language": "Perl", + "lines": 31, + "truncated": false, + "block": 1, + "row": 4520 + }, + { + "path": "get_interpro_alignments.pl", + "sha256": "498316a254932a3ab0eba1af506c47f2c3139e3fb9b2fe4a3d87445067d18725", + "language": "Perl", + "lines": 103, + "truncated": false, + "block": 1, + "row": 4894 + }, + { + "path": "get_n50.pl", + "sha256": "b4b03a5d9735be577163b52a1810aa5d19238b81a7bc533469da44eb8662d25d", + "language": "Perl", + "lines": 42, + "truncated": false, + "block": 1, + "row": 4574 + }, + { + "path": "get_reference_nodes.m", + "sha256": "945d0fe7b69b8986feb7589ed9bd42b23140f6298fb494560b637978cb466f52", + "language": "MATLAB", + "lines": 108, + "truncated": false, + "block": 1, + "row": 3647 + }, + { + "path": "get_stats.pl", + "sha256": "20d7193a4873c9aafe09ccb397b81eead0e78a2d8557cab72d554c25a8d080f0", + "language": "Perl", + "lines": 204, + "truncated": false, + "block": 1, + "row": 4908 + }, + { + "path": "get_str.pl", + "sha256": "9016946e13222bee9664c04f37fc23ebcc422ad5f74230e0d54dbaf58c717b8a", + "language": "Perl", + "lines": 63, + "truncated": false, + "block": 1, + "row": 4687 + }, + { + "path": "getcds.pl", + "sha256": "a98d1d745dc109fceab259d3a0eddc07f685468519b9e23b4c5a80e6ea3147b0", + "language": "Perl", + "lines": 81, + "truncated": false, + "block": 1, + "row": 4799 + }, + { + "path": "getcompftr.pl", + "sha256": "f81f5db9af321877d87bb2920bc54c3785efc6efb70a0914691bfea86c850630", + "language": "Perl", + "lines": 28, + "truncated": false, + "block": 1, + "row": 4501 + }, + { + "path": "getcompswise.m", + "sha256": "115605a8d6ad8e4e7716d68ff5f6b0444f477453898ea735ad03892ffbe3153e", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 1, + "row": 2873 + }, + { + "path": "getcont.pl", + "sha256": "3bf880848929da135d27467ffa0e3c4b9ad019775d70520df86bcf40945f9706", + "language": "Perl", + "lines": 386, + "truncated": false, + "block": 1, + "row": 4945 + }, + { + "path": "getcontig.pl", + "sha256": "5da70a4eb01e4671b47ce51783a710f7cc1d5d58389daffefc3fed1885fd713e", + "language": "Perl", + "lines": 129, + "truncated": false, + "block": 1, + "row": 4889 + }, + { + "path": "getcov.pl", + "sha256": "71cff7b6597d3c5bb9dffc2bb63e9cb7fffab7e15bda9b54eb44591485f57019", + "language": "Perl", + "lines": 17, + "truncated": false, + "block": 1, + "row": 4397 + }, + { + "path": "getcov.r", + "sha256": "e1799bfe735f091a5bd1639a2fb88e2d50656e7df2eaae8d13c88be0b9bc34ef", + "language": "R", + "lines": 13, + "truncated": false, + "block": 1, + "row": 9940 + }, + { + "path": "getcwd.pl", + "sha256": "0baa1bf390a9a6104ff5c11e59cd6c2b315e596ce2da599729611d12101f1d2d", + "language": "Perl", + "lines": 71, + "truncated": false, + "block": 1, + "row": 4671 + }, + { + "path": "getdb.pl", + "sha256": "6965288022458882265eef09a7f445844696ce532afbbd127e91375c13bd5d31", + "language": "Perl", + "lines": 23, + "truncated": false, + "block": 1, + "row": 4460 + }, + { + "path": "getdepth.pl", + "sha256": "a2260258580ac3a4a2fe787bb13a2a4fdf57767c91c1f1b0a0ebe646bd1fb6a4", + "language": "Perl", + "lines": 25, + "truncated": false, + "block": 1, + "row": 4399 + }, + { + "path": "getdepthR.pl", + "sha256": "15f826e68b0b412818019ed706dccf6cf5a90d36c492f7a67799076dbba734c9", + "language": "Perl", + "lines": 29, + "truncated": false, + "block": 1, + "row": 4417 + }, + { + "path": "getdepthall.pl", + "sha256": "e1c49c1b3529b6b55e048c6a89900c9160d8d6b4150764924e32894fea7d2f58", + "language": "Perl", + "lines": 31, + "truncated": false, + "block": 1, + "row": 4466 + }, + { + "path": "getdist.pl", + "sha256": "e3cc71c5ef221e1805af2a6b451a9d21256802101a9b5c6c597af63ba7447094", + "language": "Perl", + "lines": 183, + "truncated": false, + "block": 1, + "row": 4886 + }, + { + "path": "getensid.pl", + "sha256": "a2568018428587a51c6f49fa1ed2805be449816b3604065a808127ba4f476f5c", + "language": "Perl", + "lines": 40, + "truncated": false, + "block": 1, + "row": 4595 + }, + { + "path": "getensidmech.pl", + "sha256": "81134747f68e9c580fea513f41a97ff70533029ae39811513c224e0f6e653ba9", + "language": "Perl", + "lines": 32, + "truncated": false, + "block": 1, + "row": 4479 + }, + { + "path": "getenv.c", + "sha256": "e4d704563737815b652dc5ff027c55dec9ee6511c810993b2dc184d17e4ab948", + "language": "C", + "lines": 56, + "truncated": false, + "block": 1, + "row": 16 + }, + { + "path": "getflow.pl", + "sha256": "daec465cbc3fcf78bbd92fac8de7a7f0d44cc7f280c478574b61d99b6c084244", + "language": "Perl", + "lines": 4, + "truncated": false, + "block": 1, + "row": 4381 + }, + { + "path": "getfna.pl", + "sha256": "a6a0794fb42dd072257b2958314330955742de202f36b6d56cb15fcf23f26f69", + "language": "Perl", + "lines": 4, + "truncated": false, + "block": 1, + "row": 4380 + }, + { + "path": "getgen.pl", + "sha256": "8739b95ecf4e185cb7251918ab1a0fc138a12c66b08300e2febf6210a457480e", + "language": "Perl", + "lines": 17, + "truncated": false, + "block": 1, + "row": 4583 + }, + { + "path": "getgene.pl", + "sha256": "3ace9006f21245bd8eeb01517a19efb5d4096b5a2eb0e5603ef9080f53e0bb95", + "language": "Perl", + "lines": 82, + "truncated": false, + "block": 1, + "row": 4793 + }, + { + "path": "getgenezf.pl", + "sha256": "156fb17e3db75a68d0df4ff46e9a57af39d608fe9cb41065a260989c1229f283", + "language": "Perl", + "lines": 103, + "truncated": false, + "block": 1, + "row": 4827 + }, + { + "path": "getgn.pl", + "sha256": "4f3edb7570d228cf628074dfa30223cbb596ef960f5ff7cf2ea3a1086079c4f6", + "language": "Perl", + "lines": 13, + "truncated": false, + "block": 1, + "row": 4392 + }, + { + "path": "getgoodpair.pl", + "sha256": "71ca6c0bf9f7de7d18e584fefc854e28a5738712ea009da798bf08c7bffe100e", + "language": "Perl", + "lines": 20, + "truncated": false, + "block": 1, + "row": 4442 + }, + { + "path": "getintgenelem.pl", + "sha256": "9f69e081f85743bde0c80deac84f3bacb3c040b4a5997917433ed69d98415a39", + "language": "Perl", + "lines": 80, + "truncated": false, + "block": 1, + "row": 4767 + }, + { + "path": "getjobid.pl", + "sha256": "91d47dc301195cf060648d7c766ad83cb9b0b4bf49b03a66daaf8309044cba03", + "language": "Perl", + "lines": 12, + "truncated": false, + "block": 1, + "row": 4386 + }, + { + "path": "getlinker.pl", + "sha256": "b63ea37cdc183b8576f530466839326614a6e4a6e20453685ee6d2c816bc439c", + "language": "Perl", + "lines": 82, + "truncated": false, + "block": 1, + "row": 4769 + }, + { + "path": "getorder.pl", + "sha256": "249984b25f516d35d98d567c19a0e5c402b994f775232f6d335b737bc4e85edc", + "language": "Perl", + "lines": 104, + "truncated": false, + "block": 1, + "row": 4779 + }, + { + "path": "getordernew.pl", + "sha256": "12be278952a3f5ab2f85ca68fd1ea3ac8eab6202c1a3bb8696367ec1ffe928ea", + "language": "Perl", + "lines": 96, + "truncated": false, + "block": 1, + "row": 4810 + }, + { + "path": "getorf.pl", + "sha256": "edaf371aeb257a14df3bdc975ede1275c2fcd22b8a59eef7abd554da3056b526", + "language": "Perl", + "lines": 84, + "truncated": false, + "block": 1, + "row": 4809 + }, + { + "path": "getpair.pl", + "sha256": "6dfaa7362659bd2e17278ee83c3be20ee61aff2efe6e13399039b5444ec89297", + "language": "Perl", + "lines": 29, + "truncated": false, + "block": 1, + "row": 4470 + }, + { + "path": "getpdb.pl", + "sha256": "8bbfcee8f5bb736b6e74c9e72cddd5f43e8fadae8dbcde3daed7f6c77ea15950", + "language": "Perl", + "lines": 5, + "truncated": false, + "block": 1, + "row": 4370 + }, + { + "path": "getpospairdist.pl", + "sha256": "6735dd21a9d80fb7e2eec85e383e12d3aa402ef3d0e3bb8927ad64b049bd752f", + "language": "Perl", + "lines": 22, + "truncated": false, + "block": 1, + "row": 4448 + }, + { + "path": "getreadanno.pl", + "sha256": "7fbd90feaab84b894ee52b75ca99180919b976a945cd84cd731b9e64d6059683", + "language": "Perl", + "lines": 27, + "truncated": false, + "block": 1, + "row": 4422 + }, + { + "path": "getrefsize.m", + "sha256": "cca2750a1211410abf325a622b7db6c15a8343ed550ee062d97da4b60a5cc87c", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 1, + "row": 2374 + }, + { + "path": "getsiglist.m", + "sha256": "b30682b6c6abda911661b5b61d9abcb7a19b46f120b8655ea2eedacd48e3b4f2", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 1, + "row": 3043 + }, + { + "path": "getsigseq.pl", + "sha256": "08c1678725290c5f25ace0bfbdf034a4b11a59372bc27424a7d993f04c6f2b7e", + "language": "Perl", + "lines": 7, + "truncated": false, + "block": 1, + "row": 4376 + }, + { + "path": "gettophit.pl", + "sha256": "16a05bb3a902d90cd034821aea78b733106dddc45ec2ae9a3abfbd0a271a673d", + "language": "Perl", + "lines": 52, + "truncated": false, + "block": 1, + "row": 4580 + }, + { + "path": "getys.py", + "sha256": "fa015d248400bed81ab30a2311ee8d859cac3076cf783b5f1d289380f16a6e6d", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5219 + }, + { + "path": "ghcii.sh", + "sha256": "c71bb331afbc5e87e19b4ccaabcdd4d919f7c3bb4143f58e6541d88623f2c144", + "language": "Shell", + "lines": 2, + "truncated": false, + "block": 1, + "row": 11106 + }, + { + "path": "gifd.pl", + "sha256": "30ee465b21f766b223a0d609619c8cddc8100eef33208b344c009632bf1dd2b1", + "language": "Perl", + "lines": 29, + "truncated": false, + "block": 1, + "row": 4541 + }, + { + "path": "gifgrab.pl", + "sha256": "996e04afedfe362645dc91f787b4d7c7eda931d1845cc526485a2357a9cbd367", + "language": "Perl", + "lines": 25, + "truncated": false, + "block": 1, + "row": 4640 + }, + { + "path": "gin_det_dlabels.m", + "sha256": "47a42a10a4be151bda212af32753ab561816ac31a825f970c6589d14ceb3aa31", + "language": "MATLAB", + "lines": 121, + "truncated": false, + "block": 1, + "row": 3277 + }, + { + "path": "gin_det_plabels.m", + "sha256": "ad7063d196c3b6c47014383fc7393543ee0395da3b7f10f2c604ed30383a668d", + "language": "MATLAB", + "lines": 96, + "truncated": false, + "block": 1, + "row": 3220 + }, + { + "path": "gir.pl", + "sha256": "230c7d7dc04fac4cb62cdcea3f97d62c8028b77dec8515f5431a0ab1dfe45be2", + "language": "Perl", + "lines": 183, + "truncated": false, + "block": 1, + "row": 4883 + }, + { + "path": "gkrpt.pl", + "sha256": "1dec8a89d4a1cd7c0c8ea9bd6fca9f5a88438cb7fbfda7eb6eebd7e34f32797a", + "language": "Perl", + "lines": 224, + "truncated": false, + "block": 1, + "row": 4906 + }, + { + "path": "glm.nb.r", + "sha256": "1b7e3119e8326fd2e9e5fb14fa76131883f259296d38692dddcf621470b46893", + "language": "R", + "lines": 49, + "truncated": false, + "block": 1, + "row": 10028 + }, + { + "path": "glm.vr.r", + "sha256": "e277cda8d82eb2b7987f81f3a68b84157ebc36f5be62ccb18311e157bbbce329", + "language": "R", + "lines": 22, + "truncated": false, + "block": 1, + "row": 9958 + }, + { + "path": "glm_phi.m", + "sha256": "d37e3b49836c0948adc91051e6fa9b862a7dc78810e102e496d03b3772cb4ff3", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 1, + "row": 2825 + }, + { + "path": "gluconst.py", + "sha256": "fdd1a4a86dc16a64df9ab5445f5a0d41914fe8e2ff6ee480380791b1e31de0ec", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 1, + "row": 6888 + }, + { + "path": "gnus.pl", + "sha256": "e5f648d68c3e6d8f92a3fe9cc8a930b41d1a8ee9259c5b783818605c57da5886", + "language": "Perl", + "lines": 12, + "truncated": false, + "block": 1, + "row": 4390 + }, + { + "path": "godel.r", + "sha256": "5339a13afce7746af783b2685118cbb0c2fcaaacd13f9a070b34be2bbe2e1620", + "language": "R", + "lines": 83, + "truncated": false, + "block": 1, + "row": 10102 + }, + { + "path": "goograph.pl", + "sha256": "3922fefb987e917eea066f0fbf16bdcc4eec747c5e8e10ff3f7a7f642cc1535f", + "language": "Perl", + "lines": 12, + "truncated": false, + "block": 1, + "row": 4394 + }, + { + "path": "gplot.sh", + "sha256": "c4d12c3a41379607dc52ae7ea6feab9f0c48c9f5ce013909d5fa23b34b475c65", + "language": "Shell", + "lines": 22, + "truncated": false, + "block": 1, + "row": 11253 + }, + { + "path": "gps.pl", + "sha256": "475040a0cd378b15ef9e8c4be3508d90c2d526861fb538e1e26ce597c1fde03e", + "language": "Perl", + "lines": 51, + "truncated": false, + "block": 1, + "row": 4566 + }, + { + "path": "grade.c", + "sha256": "1b19ffe2e344cbd002f541ef651553f56a2cab5400d0b776919a3ea56441267c", + "language": "C", + "lines": 119, + "truncated": false, + "block": 1, + "row": 6 + }, + { + "path": "graph.pl", + "sha256": "114319dbc0e68342c591cdb30377ad25131b7ffb1832be2c383df8d87482dc04", + "language": "Perl", + "lines": 38, + "truncated": false, + "block": 1, + "row": 4507 + }, + { + "path": "graphSearch.pl", + "sha256": "b0153bf08acf9cde2349f5175653aeeb70c780af7da372479f66ed95e8827b9c", + "language": "Perl", + "lines": 56, + "truncated": false, + "block": 1, + "row": 4689 + }, + { + "path": "grep.py", + "sha256": "ad1a0f1012b6d3801ea757f09dd7e7252b387357a4c39a5985a08ef3e8a6dc4f", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 1, + "row": 6403 + }, + { + "path": "grepdead.pl", + "sha256": "4b22c136606ecbf5fcf85f89f314c6e94994091eb650246d5bc7ed568fc73cdf", + "language": "Perl", + "lines": 44, + "truncated": false, + "block": 1, + "row": 4509 + }, + { + "path": "grepfailed.pl", + "sha256": "b130b7d17f4c79d78a2a76a24ded7aaf50c33424839728100359fd2c1fdf213f", + "language": "Perl", + "lines": 55, + "truncated": false, + "block": 1, + "row": 4564 + }, + { + "path": "groteig.pl", + "sha256": "959447ef8bebfead119eaf0085ad15d42da1375e71892bcef7aa42a790cce166", + "language": "Perl", + "lines": 10, + "truncated": false, + "block": 1, + "row": 4389 + }, + { + "path": "groupByOverlap.r", + "sha256": "fbefcfedc5dab5ac5117210a708eee62084f59368148959cdece456a9432eb64", + "language": "R", + "lines": 18, + "truncated": false, + "block": 1, + "row": 9985 + }, + { + "path": "group_tags.pl", + "sha256": "e1040f82d198353f342a45c3ee15fe60a59eb27afba3531dc091ce6331081ca4", + "language": "Perl", + "lines": 22, + "truncated": false, + "block": 1, + "row": 4415 + }, + { + "path": "gs.pl", + "sha256": "ef0a88ef252828de6cae528b760832dd3ce11bdcae5b2cb430e26e5653f60d96", + "language": "Perl", + "lines": 31, + "truncated": false, + "block": 1, + "row": 4439 + }, + { + "path": "gsalgoforcdslistat3bp.pl", + "sha256": "5229078ae851c3ff2bbf7854275bc413f5b2c633bcc979d4c72abec3b5a19c97", + "language": "Perl", + "lines": 76, + "truncated": false, + "block": 1, + "row": 4761 + }, + { + "path": "gsalgoforcdssepat3bp.pl", + "sha256": "348248bd03d37d927752e4f976b0d96f3698885ee785600d09ec69d69af27230", + "language": "Perl", + "lines": 76, + "truncated": false, + "block": 1, + "row": 4759 + }, + { + "path": "gso.m", + "sha256": "dd045cebbe548075d7f7494375f9633310277a75a02d19758357f5dac006c93c", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 1, + "row": 2448 + }, + { + "path": "gsparser.pl", + "sha256": "79591ed187cb30db7d902cf6934974440ec6cb60336387ec4eb443c62516369b", + "language": "Perl", + "lines": 34, + "truncated": false, + "block": 1, + "row": 4490 + }, + { + "path": "gsrucc.pl", + "sha256": "2cb991f7403c861c54ed525be5295969f66226bc4028dce7ef0d5732e0b9f61a", + "language": "Perl", + "lines": 8, + "truncated": false, + "block": 1, + "row": 4371 + }, + { + "path": "hToTxt.pl", + "sha256": "4d63e1215049b22d80e97347eca51cc3c896472586437bd727ed72ba1c893f14", + "language": "Perl", + "lines": 50, + "truncated": false, + "block": 1, + "row": 4652 + }, + { + "path": "ham.sh", + "sha256": "6b28e1f6cf0d4fe431154bf439c0aa8c8b35cb30c745b4a81180440ec5c0509e", + "language": "Shell", + "lines": 79, + "truncated": false, + "block": 1, + "row": 11643 + }, + { + "path": "hamming.distance.r", + "sha256": "b7e959948179b3f420ec63511335c67d2d34de004407b8e25d534397df907105", + "language": "R", + "lines": 38, + "truncated": false, + "block": 1, + "row": 9922 + }, + { + "path": "hamming.window.r", + "sha256": "a55d6a5a70de93fa32559061c8f688e117a32fd3e38893f9fadcf91f2d137cec", + "language": "R", + "lines": 11, + "truncated": false, + "block": 1, + "row": 9900 + }, + { + "path": "hamrcount.pl", + "sha256": "e96916d1f4df677b88908ea26ce4227e7b3aaea3950cfbb2acadd3bcf9af5e23", + "language": "Perl", + "lines": 50, + "truncated": false, + "block": 1, + "row": 4534 + }, + { + "path": "hamrpwcomb.pl", + "sha256": "2cfdc78a16931cb6c573e253c9bd27327c41555e092f21ad3681f1eb5b6f1bf8", + "language": "Perl", + "lines": 117, + "truncated": false, + "block": 1, + "row": 4950 + }, + { + "path": "hanning.window.r", + "sha256": "9faff9b8e101ade8563f781832846fe292d7060db1759f176cdefa8a36063a58", + "language": "R", + "lines": 11, + "truncated": false, + "block": 1, + "row": 9899 + }, + { + "path": "hansen2.pl", + "sha256": "8ec5bb8d71c9d86541a2e83a0e108d1fdbf153a07f2cc4398ab087404d8da2c1", + "language": "Perl", + "lines": 26, + "truncated": false, + "block": 1, + "row": 4587 + }, + { + "path": "harness.pl", + "sha256": "6ce580076b5fe8ea29f389b9b5a06c87a0b7220d8af1c7f9926c02f9f1f0760b", + "language": "Perl", + "lines": 234, + "truncated": false, + "block": 1, + "row": 4929 + }, + { + "path": "hatch_demo.py", + "sha256": "adf9f16d2af9acf1c540ad6538a4b386a01e490c94f7fcd66abf1edf9c0063ee", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 1, + "row": 5382 + }, + { + "path": "hbb.sh", + "sha256": "17b5b9395251bed824aa59c45fe332303eab03e3792abde91c9bc98a29aee993", + "language": "Shell", + "lines": 1, + "truncated": false, + "block": 1, + "row": 11119 + }, + { + "path": "headWrapper.pl", + "sha256": "2f51f854a2075d791f7e769d47a6d5556c98045c15c64d16bfbd02e4c6468bcd", + "language": "Perl", + "lines": 19, + "truncated": false, + "block": 1, + "row": 4428 + }, + { + "path": "hel2mos1.sh", + "sha256": "0fbe90d2e1c5127bc9b8c447f01ce4f234e9521dd08fcb12be9026c3f43f07ca", + "language": "Shell", + "lines": 35, + "truncated": false, + "block": 1, + "row": 11392 + }, + { + "path": "hell.pl", + "sha256": "a14865856d54b3d0a9f3f6bb0aa2825454c13d2d0f325c7916be1566c749f199", + "language": "Perl", + "lines": 13, + "truncated": false, + "block": 1, + "row": 4413 + }, + { + "path": "hello.c", + "sha256": "812e5fc5593d7e1590a1e9e719fa7430ca415b76654d30decba0838a2d787d1d", + "language": "C", + "lines": 17, + "truncated": false, + "block": 1, + "row": 3 + }, + { + "path": "hello.cpp", + "sha256": "184102290cd30918ccec72abf229bd1b6bddaa66ed7bf3960737c99ab6bb2cf2", + "language": "C++", + "lines": 17, + "truncated": false, + "block": 1, + "row": 208 + }, + { + "path": "hello.pl", + "sha256": "3071655aeb7e29429da8ae27c1bfbee20975c79ce69e376dd648ee9d5bbdc445", + "language": "Perl", + "lines": 21, + "truncated": false, + "block": 1, + "row": 4602 + }, + { + "path": "helloWorld.py", + "sha256": "6b903fb7762640ef94fe9351e98703146593d2bda588565f770109ca68341729", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4963 + }, + { + "path": "hexToPng.pl", + "sha256": "dd37087475c14bf2dd220244264466177a1fce904e8df08f2426abec58b14de4", + "language": "Perl", + "lines": 98, + "truncated": false, + "block": 1, + "row": 4828 + }, + { + "path": "hg1.pl", + "sha256": "7e28775174f8cf5fd024d8988abc199b02440083f30b2ae5822c94eefca31e34", + "language": "Perl", + "lines": 22, + "truncated": false, + "block": 1, + "row": 4518 + }, + { + "path": "hg2nrnversion_h.sh", + "sha256": "c4ff9bd57eed4065fd1c0a72cdfcefba9bb7ad908ce686a03be24ffe29c22c71", + "language": "Shell", + "lines": 36, + "truncated": false, + "block": 1, + "row": 11493 + }, + { + "path": "higherordercorr.m", + "sha256": "232af0a9d3da7250ad2e3300f80e43e811c6cb7135ac09a5c4ad043000321616", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 1, + "row": 2650 + }, + { + "path": "hind.pl", + "sha256": "7c061537cb7202b443e6b3e18950febbc4b020a9ee3ef8f42db6f81460337175", + "language": "Perl", + "lines": 64, + "truncated": false, + "block": 1, + "row": 4771 + }, + { + "path": "hisdal.pl", + "sha256": "65f99074f06a0f73261b4922f60ec3d308ac0ef7477b9bf718ea4f0345fe07f8", + "language": "Perl", + "lines": 52, + "truncated": false, + "block": 1, + "row": 4723 + }, + { + "path": "hmm1.pl", + "sha256": "abebdc64c4a1d1188572efebbf17a65bf7900159a04e0ad32f9a99fd53b52a6f", + "language": "Perl", + "lines": 115, + "truncated": false, + "block": 1, + "row": 4841 + }, + { + "path": "hmmwriteout.pl", + "sha256": "be31fc78775ab73c4f1cc8286d7a53a2682bbb147f75c356e22e994de5d7dbec", + "language": "Perl", + "lines": 18, + "truncated": false, + "block": 1, + "row": 4433 + }, + { + "path": "hoc2dec.sh", + "sha256": "37cb4e4cff852f50b0e54a7c2c8eec141bf12cbdf0c477b1064ba86a3a5b35d5", + "language": "Shell", + "lines": 43, + "truncated": false, + "block": 1, + "row": 11599 + }, + { + "path": "homology_diff.conf.pl", + "sha256": "367a110e72a505642ccaeeaee5e423c8317c8ebd5a55ebd8bdd74bcf225d6fc8", + "language": "Perl", + "lines": 20, + "truncated": false, + "block": 1, + "row": 4430 + }, + { + "path": "homology_distances.pl", + "sha256": "7ece91b10096a535d2da5569ff3b8a1cc7d15d308d9ec988310ff77c6377a40d", + "language": "Perl", + "lines": 61, + "truncated": false, + "block": 1, + "row": 4735 + }, + { + "path": "hon1.pl", + "sha256": "c7e343f588d4c808a71196c52752c4a992a9f86248eef4508a00ddb45e17057a", + "language": "Perl", + "lines": 26, + "truncated": false, + "block": 1, + "row": 4591 + }, + { + "path": "hook.pl", + "sha256": "c19a4613b5a52545cdbfd3f241f3015a7ac087d84f24a3fa09b3742252a75fab", + "language": "Perl", + "lines": 18, + "truncated": false, + "block": 1, + "row": 4398 + }, + { + "path": "hordnes.pl", + "sha256": "99b9f19fdc6bc853aa4604c39dd4d92b4299e76babdb9f0f7fda66692b360aca", + "language": "Perl", + "lines": 53, + "truncated": false, + "block": 1, + "row": 4633 + }, + { + "path": "hpgcdown1.pl", + "sha256": "aae4339c4c688e6b92d8b539b0299a5425d1bcc46fd3ea148ea224b9eb8a0aec", + "language": "Perl", + "lines": 27, + "truncated": false, + "block": 1, + "row": 4547 + }, + { + "path": "ht.sh", + "sha256": "a7c2a272550f584e1a3a56a606483b94c8601974879eef0fff2a6b536be12ffe", + "language": "Shell", + "lines": 7, + "truncated": false, + "block": 1, + "row": 11111 + }, + { + "path": "htcontext.sh", + "sha256": "c979a11fe7ca12fee0703bdc6dceb09d8846e170d3381511a79fd2c9c5fa7649", + "language": "Shell", + "lines": 7, + "truncated": false, + "block": 1, + "row": 11131 + }, + { + "path": "htlatex.sh", + "sha256": "0a0c8deb56f32769fdf05be54cd95746f7a8a45d187c274685f12e9a52ee6859", + "language": "Shell", + "lines": 9, + "truncated": false, + "block": 1, + "row": 11645 + }, + { + "path": "htmex.sh", + "sha256": "b69491c78ac2534c2396e817af2610ff543f39b62f2a1c6f110d00c7de3058b3", + "language": "Shell", + "lines": 9, + "truncated": false, + "block": 1, + "row": 11580 + }, + { + "path": "html_index.pl", + "sha256": "b2c7a6136f69224d462dd88dfab2091285d78a2e3bc6c9b46861f44950afd70f", + "language": "Perl", + "lines": 42, + "truncated": false, + "block": 1, + "row": 4497 + }, + { + "path": "htmldiff.pl", + "sha256": "10fe1671524f656a028bbb44e763bc3adcccb2aab96a76208fdfc5369e6441c9", + "language": "Perl", + "lines": 100, + "truncated": false, + "block": 1, + "row": 4748 + }, + { + "path": "httex.sh", + "sha256": "3ce566119c378cdcf3bd6d5f6e9c80d109516f3869aa52fdda6e37984e2d07d1", + "language": "Shell", + "lines": 9, + "truncated": false, + "block": 1, + "row": 11582 + }, + { + "path": "httexi.sh", + "sha256": "3b5743a7f1e34249934eaea553753e23aca007abcdd4a84d30d0d40c8dc703f0", + "language": "Shell", + "lines": 10, + "truncated": false, + "block": 1, + "row": 11642 + }, + { + "path": "htxelatex.sh", + "sha256": "8d058b1bd9301dc903acf0f5a51201583368c65b0138508499fd60ca98c14651", + "language": "Shell", + "lines": 9, + "truncated": false, + "block": 1, + "row": 11648 + }, + { + "path": "htxetex.sh", + "sha256": "3ff488b325264a0ae7c50323ed6267f7c571b7cbb2a41081e61f7ad7a4b397e1", + "language": "Shell", + "lines": 9, + "truncated": false, + "block": 1, + "row": 11591 + }, + { + "path": "hum.r", + "sha256": "76e4493775efe71f9a3d174c7d8c2d3a62d61f90541c3ee2affe395c882fb72d", + "language": "R", + "lines": 8, + "truncated": false, + "block": 1, + "row": 9901 + }, + { + "path": "huntmr.m", + "sha256": "cf68615e23d689953a9bac723a0119df4ac4211c8dea25f06531b0a049afc374", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 1, + "row": 2340 + }, + { + "path": "husom.pl", + "sha256": "0f2888debcdb38306b5f7a794dd91050ee97ca0c86a168921640d8e81315e5c6", + "language": "Perl", + "lines": 39, + "truncated": false, + "block": 1, + "row": 4567 + }, + { + "path": "hw2intersectunion.pl", + "sha256": "d3220338fba6b84af8b8b68e2d67e178ab85db96f4cea557e44ad330c57b1c0c", + "language": "Perl", + "lines": 18, + "truncated": false, + "block": 1, + "row": 4446 + }, + { + "path": "hw2palin.pl", + "sha256": "9dc3e870810ef076063490cc9df968e29cc252ced7742cd99f76585f8236740b", + "language": "Perl", + "lines": 18, + "truncated": false, + "block": 1, + "row": 4427 + }, + { + "path": "hydpro.pl", + "sha256": "f6df75387dd34b2942f0f3d81232ef09d8ffa9957d490b77ca6c22fdbee071aa", + "language": "Perl", + "lines": 199, + "truncated": false, + "block": 1, + "row": 4903 + }, + { + "path": "hyp.pl", + "sha256": "dc958ac769437ecabc4dce2d8f8f309c0f25077b351386fe541586a9cbea4941", + "language": "Perl", + "lines": 45, + "truncated": false, + "block": 1, + "row": 4617 + }, + { + "path": "i_f_ft_img.pl", + "sha256": "d3048da0e88f02b2d1bf9e627e0b9be390ae247581270fe6485596c61a0bc823", + "language": "Perl", + "lines": 154, + "truncated": false, + "block": 1, + "row": 4877 + }, + { + "path": "iad.pl", + "sha256": "3bafda1db5634ba85a442d77ea40cc80323955bca63002706bc9e8378c0e0046", + "language": "Perl", + "lines": 94, + "truncated": false, + "block": 1, + "row": 4802 + }, + { + "path": "iam_int.pl", + "sha256": "a51c844194fad9234ad6507d93faf22aa05fca4c8d83cf70f49f0f3cdf5ca347", + "language": "Perl", + "lines": 43, + "truncated": false, + "block": 1, + "row": 4517 + }, + { + "path": "ica.r", + "sha256": "4ebc432e163ad9c9a32b3e82415694132d8d5e7086042d712d904d0bdf775c29", + "language": "R", + "lines": 60, + "truncated": false, + "block": 1, + "row": 10054 + }, + { + "path": "iceegplot.m", + "sha256": "655ff55fcf9da2d254a34a6d6da9cc8247c99a99d547335669041a0e5a4e18a5", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 1, + "row": 2689 + }, + { + "path": "idlever.py", + "sha256": "c148862fbbe3494a69e52fe2543d23cbca5621b352439d0d9e4d91ede68c111c", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4974 + }, + { + "path": "idxGen.sh", + "sha256": "14fa7e391530d484153da0481108e6d890f9971a55884b499826395b29f50edf", + "language": "Shell", + "lines": 1439, + "truncated": false, + "block": 1, + "row": 11754 + }, + { + "path": "ig_glm.r", + "sha256": "8c40ba0e8f4dc184a92e061951dec237f9d0865b234247e9effcc0a8e86e36ea", + "language": "R", + "lines": 61, + "truncated": false, + "block": 1, + "row": 10091 + }, + { + "path": "image.r", + "sha256": "7765e693977c92c009c7e508d1b4d134818289bf0bcfc2fd286c0b21ec26de30", + "language": "R", + "lines": 35, + "truncated": false, + "block": 1, + "row": 10003 + }, + { + "path": "image_mat.m", + "sha256": "b0e00b098480eb252cfe88753fca8044980f422820a1791baf6affbcc24037aa", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 1, + "row": 2714 + }, + { + "path": "imgdistpt.m", + "sha256": "b7dc316cf78fb2b4c92bc34ecc12cbd1b23c5d81ca935b4363f03e986b5cad7a", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 1, + "row": 2385 + }, + { + "path": "imports_runme.pl", + "sha256": "c1ff2862eea515ad2bf3fc1fb28a6f0815200b2fcb7d007f41d3fcb18ef7396c", + "language": "Perl", + "lines": 5, + "truncated": false, + "block": 1, + "row": 4369 + }, + { + "path": "impropers.py", + "sha256": "7969191b552b45e8072e92323fc6e457b53ed6e5c4ebef212848022edadac574", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 1, + "row": 7478 + }, + { + "path": "impute.r", + "sha256": "b2b8e1cb29a960650607fd1eaf644b715edefc53f02b7e3df26f40abd163e152", + "language": "R", + "lines": 39, + "truncated": false, + "block": 1, + "row": 9997 + }, + { + "path": "inclusionList.m", + "sha256": "82d8e3ef1e1d22d2bbcff94295ac6a88e59e818b8fccbc70ca1ea95c94313582", + "language": "MATLAB", + "lines": 177, + "truncated": false, + "block": 1, + "row": 3528 + }, + { + "path": "infcox.r", + "sha256": "b2a8fbe65dc2ed9dfe0fa719ad9a7cc17b5b83ffafe9a030a41c24fe30727230", + "language": "R", + "lines": 10, + "truncated": false, + "block": 1, + "row": 9915 + }, + { + "path": "info.pl", + "sha256": "e7a2cfcaf493e489e4073e6e1b63a19df8064ecf62803a4ee4ae84c520c5a177", + "language": "Perl", + "lines": 111, + "truncated": false, + "block": 1, + "row": 4865 + }, + { + "path": "info.py", + "sha256": "ea579672b65f5fdacc4460a30773178ed8dd8764c41249f0a9f7bd996874b23a", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 1, + "row": 5194 + }, + { + "path": "inform.pl", + "sha256": "57a322572b8206e85dbba61d158ec9b2905e0b8b5a4a07a0e08efd773c628677", + "language": "Perl", + "lines": 38, + "truncated": false, + "block": 1, + "row": 4533 + }, + { + "path": "inherit_runme.pl", + "sha256": "1b0e47ab8fdd69b11ba81ab30550c1b4e70f615319ff2c3d483dcd35cd668ff7", + "language": "Perl", + "lines": 9, + "truncated": false, + "block": 1, + "row": 4375 + }, + { + "path": "init_8.0.1.0.m", + "sha256": "468cf353446709dc335079a9a7ac57631e732cea4196aa99131a0e1f996fc20b", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 1, + "row": 2378 + }, + { + "path": "inject-errors.pl", + "sha256": "4d23dcd3e69721d025ee6e7a7540e0677317d0eab526bae1ddfa3848006d62e3", + "language": "Perl", + "lines": 55, + "truncated": false, + "block": 1, + "row": 4628 + }, + { + "path": "inject_mutations.pl", + "sha256": "9bf8de8703eccd5df6be2a936bfb9877e93285d2fd1010904872909235c2cac3", + "language": "Perl", + "lines": 66, + "truncated": false, + "block": 1, + "row": 4737 + }, + { + "path": "injectmute.pl", + "sha256": "ad6e8caeef2248aa7d51f48fff7668303edded1ceba369f5d25dff840c5cafa4", + "language": "Perl", + "lines": 44, + "truncated": false, + "block": 1, + "row": 4614 + }, + { + "path": "inlpp.pl", + "sha256": "3b0b2f9da954b7c2a29298556b1b083496645299462ec8b684bcd882131b82f2", + "language": "Perl", + "lines": 29, + "truncated": false, + "block": 1, + "row": 4474 + }, + { + "path": "inlpp_link.pl", + "sha256": "27de19bdb68d33a28902bbe5e73a5454513210e139f330cfba6ca71257520635", + "language": "Perl", + "lines": 39, + "truncated": false, + "block": 1, + "row": 4576 + }, + { + "path": "inlppminimal.pl", + "sha256": "2c31baff9966727f5a5903dd513942e69673275227e384ecc9743b49576749b9", + "language": "Perl", + "lines": 22, + "truncated": false, + "block": 1, + "row": 4444 + }, + { + "path": "insertSeq.pl", + "sha256": "ca92864266ed93009b337ede21fcfd718c2ca3a9c2c384b9a0eb67a87e72cfc3", + "language": "Perl", + "lines": 34, + "truncated": false, + "block": 1, + "row": 4508 + }, + { + "path": "insertWA.pl", + "sha256": "028b6d36e82bd7d9bf746a707857402099555c6cacd6c071cfa4651e7c672723", + "language": "Perl", + "lines": 34, + "truncated": false, + "block": 1, + "row": 4532 + }, + { + "path": "inserts2estimates.pl", + "sha256": "d94410cab0ad6849538106a497a831f126517b1cd27252be09f033f95c82617c", + "language": "Perl", + "lines": 292, + "truncated": false, + "block": 1, + "row": 4940 + }, + { + "path": "insilicodigest.m", + "sha256": "58e888dab6e75d514624697e2b49d3cf4512700553e20c5e7f3577cb8b8bf374", + "language": "MATLAB", + "lines": 124, + "truncated": false, + "block": 1, + "row": 3549 + }, + { + "path": "inspect.sh", + "sha256": "6082f3c85a9a817a4549bca6c6cf834b0fd37256444ad8bb60dc901f3621219c", + "language": "Shell", + "lines": 7, + "truncated": false, + "block": 1, + "row": 11125 + }, + { + "path": "integEEGfMRI.m", + "sha256": "9c156cfc409c3fd3846aa48a27a51af6831b6d9388c3e7be5d10e411eb8baa6a", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 1, + "row": 2396 + }, + { + "path": "intelCompilerTest.py", + "sha256": "e922219da3b3e8cd8e9f8027055254d9adbf0830138e685d169ccfac8b126fad", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 1, + "row": 5331 + }, + { + "path": "intensitycomp.r", + "sha256": "f67b4606e4f6c7245863c67699539de40df8e32a937a754b08f4668770f6f346", + "language": "R", + "lines": 5, + "truncated": false, + "block": 1, + "row": 9897 + }, + { + "path": "interactive.r", + "sha256": "4d6c45e26fd9315c3b4983d5bcad0dee2240798f380ac54a2e764cb60437b645", + "language": "R", + "lines": 106, + "truncated": false, + "block": 1, + "row": 10162 + }, + { + "path": "interp_demo.py", + "sha256": "acad7ee1ea5dea67d1f919a1b1e77169ac6c15a20ed5628b886fc12602e3480e", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 1, + "row": 5193 + }, + { + "path": "interpolate.r", + "sha256": "a213a87d1b775216da24466c442398a68cba95fb254ae4d6677cabc714fbd0ae", + "language": "R", + "lines": 67, + "truncated": false, + "block": 1, + "row": 10078 + }, + { + "path": "intronstats.pl", + "sha256": "2c2bcc03f0c28f69c852110ee197e45304fd1039fafff0e880821219a8ac90f4", + "language": "Perl", + "lines": 137, + "truncated": false, + "block": 1, + "row": 4867 + }, + { + "path": "intrpltNxcorr.m", + "sha256": "44154bb4f94eae7abf231e9cf2792384639b4904241b15a9e5c9c27d510d8a40", + "language": "MATLAB", + "lines": 150, + "truncated": false, + "block": 1, + "row": 3354 + }, + { + "path": "invftn.pl", + "sha256": "bb0bb170332217686668a9481c11c050453965992a5599eed95412cab599913b", + "language": "Perl", + "lines": 170, + "truncated": false, + "block": 1, + "row": 4879 + }, + { + "path": "ionDistribution.rmd", + "sha256": "0ace294e2a0ebbcbfd000e2d8677a053255eab15ebc59843a40086b7afb03b49", + "language": "R", + "lines": 44, + "truncated": false, + "block": 1, + "row": 9963 + }, + { + "path": "ionSearch.py", + "sha256": "764ca715f90574f32909f71f379906a5f4673e88fde30413f78f4e7dff7babfb", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 1, + "row": 7071 + }, + { + "path": "japh1.pl", + "sha256": "0faa4ea8006af20e07865c61b697c34f5dac93044f9ac09caa3310b9b36a2ec9", + "language": "Perl", + "lines": 48, + "truncated": false, + "block": 1, + "row": 4691 + }, + { + "path": "join_feature_op_vec.pl", + "sha256": "af8387e54bb3edb14c0b199e7f235beeb0f8f7ef62d6d0b02408a7b1ffebc26b", + "language": "Perl", + "lines": 40, + "truncated": false, + "block": 1, + "row": 4590 + }, + { + "path": "kap11_2.pl", + "sha256": "33b535ba3ba7ac16ff6c50f3198d72ab528acebb788f2401a3217673e3fc5c62", + "language": "Perl", + "lines": 17, + "truncated": false, + "block": 1, + "row": 4414 + }, + { + "path": "lan2csv.pl", + "sha256": "f15a0af800afde28b808bd95907a54741a8ce1809006ec23fd1d143fb7379307", + "language": "Perl", + "lines": 26, + "truncated": false, + "block": 1, + "row": 4421 + }, + { + "path": "lansepstudy.pl", + "sha256": "cd79654c75037230cc3b432c0ee38e674b105666e295b3cd5a128d39c3baee47", + "language": "Perl", + "lines": 19, + "truncated": false, + "block": 1, + "row": 4589 + }, + { + "path": "lasso.r", + "sha256": "42378da238e3e8bd0439a027d14e333d463cc59e68c1694b6b5d3cf294d43a41", + "language": "R", + "lines": 296, + "truncated": false, + "block": 1, + "row": 10439 + }, + { + "path": "lcr.pl", + "sha256": "ee653a1c7071a57dc6ec1ef071823712022070165c57483351bdd9fd5b3918cf", + "language": "Perl", + "lines": 83, + "truncated": false, + "block": 1, + "row": 4770 + }, + { + "path": "le.pl", + "sha256": "d429f9ac7505c91b1c479e9b7711359a40b31eeb176c2e1060d649f53297b774", + "language": "Perl", + "lines": 27, + "truncated": false, + "block": 1, + "row": 4610 + }, + { + "path": "len.pl", + "sha256": "5af6eb72e85ac13fe4d0b84c673b2c8531fcb001282638a6917fe49f4e5c7ab1", + "language": "Perl", + "lines": 48, + "truncated": false, + "block": 1, + "row": 4682 + }, + { + "path": "lenthr.pl", + "sha256": "a2b01de9f23fa991953f33076cd6baca328e51e726e2ec246672854d770483bb", + "language": "Perl", + "lines": 39, + "truncated": false, + "block": 1, + "row": 4645 + }, + { + "path": "levdis.pl", + "sha256": "68267b10f997bd7850c8b06d462a05863df493c004827ecf7626a2d59f33807b", + "language": "Perl", + "lines": 143, + "truncated": false, + "block": 1, + "row": 4873 + }, + { + "path": "lfqclusters.m", + "sha256": "86702aa6fa1dd1bce786ddbef8b0a700ad0eab2779611a62e2d0347a0f3ce9b5", + "language": "MATLAB", + "lines": 44, + "truncated": false, + "block": 1, + "row": 3235 + }, + { + "path": "limma.py", + "sha256": "c5180909f2de3e3cf5394501267bda2c9b4969d3c5e7db23ec9b453c5ca4d5bd", + "language": "Python", + "lines": 378, + "truncated": false, + "block": 1, + "row": 8880 + }, + { + "path": "linkerAssemblyGraph.pl", + "sha256": "77e8b97b930af8e29b3ed882235afd5750a423a33da1329cb06f910934d288cb", + "language": "Perl", + "lines": 82, + "truncated": false, + "block": 1, + "row": 4768 + }, + { + "path": "linkgrab.pl", + "sha256": "cfa33a40fd5bc26e20710f7812cc7cf0291c1b2f40d7de002d1781a3bcccd775", + "language": "Perl", + "lines": 27, + "truncated": false, + "block": 1, + "row": 4515 + }, + { + "path": "lionessMM.r", + "sha256": "8d103164a7da4c97c74dcec46b688af4ff19551c4057c97b8f05a51452a8f35c", + "language": "R", + "lines": 242, + "truncated": false, + "block": 1, + "row": 10382 + }, + { + "path": "list2csv.pl", + "sha256": "666855a12b80546bf05b8e04c0d300fe3350f4a72d97e9276b773ee43a1ed906", + "language": "Perl", + "lines": 46, + "truncated": false, + "block": 1, + "row": 4562 + }, + { + "path": "list_clusters.pl", + "sha256": "0cc328494eb8219908fef02407ecc7549821b925f6aa7d020f75f204ebf98dcd", + "language": "Perl", + "lines": 80, + "truncated": false, + "block": 1, + "row": 4787 + }, + { + "path": "lme.r", + "sha256": "7f9622a5d7d4141f6da12db8e444aa6d418299ce1739f1c8619f254cfa4957cb", + "language": "R", + "lines": 78, + "truncated": false, + "block": 1, + "row": 10134 + }, + { + "path": "loadAssembly.r", + "sha256": "a2c3a2c99389c937147621e400675dda0c8000cfd09c32a974f7c4b658b69b30", + "language": "R", + "lines": 35, + "truncated": false, + "block": 1, + "row": 9931 + }, + { + "path": "logistic.stan", + "sha256": "bcbe00154f28ab2a7c0f543f79a817986c9dbc0a9daadf96ec730d781260ab28", + "language": "Stan", + "lines": 28, + "truncated": false, + "block": 1, + "row": 11758 + }, + { + "path": "loocv_cat.pl", + "sha256": "4242d0026e56ff88a270166602a1981aa85489cc02cfc332fa80c5e5017348ab", + "language": "Perl", + "lines": 161, + "truncated": false, + "block": 1, + "row": 4925 + }, + { + "path": "loocv_t_cc.pl", + "sha256": "ed3faa8e2ce3c722cb306a8d8512c93063f077804f5fefbe7b9afb6298cdf486", + "language": "Perl", + "lines": 155, + "truncated": false, + "block": 1, + "row": 4924 + }, + { + "path": "loocv_u_rank.pl", + "sha256": "122caf758276dfe1e6fd3dfa04a2e402a9ad975793b756868506d01b13fea276", + "language": "Perl", + "lines": 153, + "truncated": false, + "block": 1, + "row": 4914 + }, + { + "path": "lots_of_glyphs.pl", + "sha256": "da58bdbd2e146d8d99f564965fa00f5876b43cfb269a87d72283658b60c858bf", + "language": "Perl", + "lines": 201, + "truncated": false, + "block": 1, + "row": 4926 + }, + { + "path": "maia1000.m", + "sha256": "2b97050d5fb37a10e92dce8420b7b81c06facb65ee2f711afdafc76ae334b160", + "language": "MATLAB", + "lines": 4, + "truncated": false, + "block": 1, + "row": 2304 + }, + { + "path": "map2gen.pl", + "sha256": "643e8aeafa247a4b5a62404baa6fe4ca2ed886f284412c0dd9e37bf06325ee9d", + "language": "Perl", + "lines": 132, + "truncated": false, + "block": 1, + "row": 4851 + }, + { + "path": "map2genome.pl", + "sha256": "91335a2dad2b32e4989c0b5c6a4c3ebece277c92a85522e17cb7501dfe60afba", + "language": "Perl", + "lines": 309, + "truncated": false, + "block": 1, + "row": 4944 + }, + { + "path": "mapAssemblyEns.pl", + "sha256": "797f224db74e3919e5b217dc876c7220d8a3d146a17556fa2925efdd3d288cda", + "language": "Perl", + "lines": 55, + "truncated": false, + "block": 1, + "row": 4675 + }, + { + "path": "mapID.r", + "sha256": "57e8aa849144e9c1529cb062317d2964b1762f818db25d19e7104443edb1d7f8", + "language": "R", + "lines": 147, + "truncated": false, + "block": 1, + "row": 10368 + }, + { + "path": "mapKEGGpathview.r", + "sha256": "31bd3201cb73cb03a1aa20efe0ccdeadf4b5c85f372975635d49e4c43797b200", + "language": "R", + "lines": 82, + "truncated": false, + "block": 1, + "row": 10297 + }, + { + "path": "mapKEGGpathview.rmd", + "sha256": "f6997444ce6ead74dbf49149943de84434d1bfd6a41da2b5d99af3feebb3d6d5", + "language": "R", + "lines": 115, + "truncated": false, + "block": 1, + "row": 10182 + }, + { + "path": "mapSeqGPU.sh", + "sha256": "4c34f2cd27b4abfd488d3349aa63c5230cc0f38b667c5b50684be556b9e1a6c0", + "language": "Shell", + "lines": 29, + "truncated": false, + "block": 1, + "row": 11649 + }, + { + "path": "mapest2codgen.pl", + "sha256": "8f5dff2eff994329fc3fc198c762889738621db3587e8511366fd86e120e7bb2", + "language": "Perl", + "lines": 60, + "truncated": false, + "block": 1, + "row": 4727 + }, + { + "path": "mapft2gen.pl", + "sha256": "58a8344286aaa6c5c91a5bcbfb19c258990e72e61032a1269161d570ea299cc7", + "language": "Perl", + "lines": 39, + "truncated": false, + "block": 1, + "row": 4516 + }, + { + "path": "markVolcanoXlsx.r", + "sha256": "e7c0f2817bdbf650be71e382840ed6af2a82638a2944da83090aa9cdf1c8d6d3", + "language": "R", + "lines": 63, + "truncated": false, + "block": 1, + "row": 10158 + }, + { + "path": "markovn.pl", + "sha256": "0b5af460030fd721309f7809c8bd4df8198235d6704b2351ae69d96c036fac49", + "language": "Perl", + "lines": 70, + "truncated": false, + "block": 1, + "row": 4740 + }, + { + "path": "match.pl", + "sha256": "b46c5cfb0205e3f4b4f6f62df2c0e60988db23c2d09e2fbf7c62f4916f578a13", + "language": "Perl", + "lines": 64, + "truncated": false, + "block": 1, + "row": 4667 + }, + { + "path": "match_column.pl", + "sha256": "ff21d9d7ba4bb7aeeddbf44889652f0fc3816ae70089715f8be3669e6360c245", + "language": "Perl", + "lines": 72, + "truncated": false, + "block": 1, + "row": 4758 + }, + { + "path": "match_string.pl", + "sha256": "2977ff79e5da2af8b4195ed69ae5d3dd395514e6b9a49e966e2dca6bd593e97d", + "language": "Perl", + "lines": 73, + "truncated": false, + "block": 1, + "row": 4749 + }, + { + "path": "matchid.pl", + "sha256": "2b2df2e5c977291f2f6e15089b9da0f21c2fd6454075736fe27936219dcd374a", + "language": "Perl", + "lines": 30, + "truncated": false, + "block": 1, + "row": 4443 + }, + { + "path": "matrix.c", + "sha256": "9416f1758b7579d128658d432e6273de0c303be4f5ed5368b67dae789c1d62b8", + "language": "C", + "lines": 61, + "truncated": false, + "block": 1, + "row": 11 + }, + { + "path": "maxLFQmo.py", + "sha256": "f41b6c895d28a500711e6923bef1f3cf7db60c10f91c1d52f0f13e77ae2eef7f", + "language": "Python", + "lines": 816, + "truncated": false, + "block": 1, + "row": 9646 + }, + { + "path": "melfalanExpression.m", + "sha256": "3c3f87e198171d94e5d57f1717eb966af46e6e5b6f6e0dc481463527a7f1fd3d", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 1, + "row": 2834 + }, + { + "path": "melfalanExpression.r", + "sha256": "2d569e0f174a7bd32afcb09c6c365d4c04fa105be559dd070490802c7b13e8e6", + "language": "R", + "lines": 186, + "truncated": false, + "block": 1, + "row": 10275 + }, + { + "path": "merOverlapper.pl", + "sha256": "6897c01597999d38648d33c5246e9895f036875d803f1318386d132555213ac0", + "language": "Perl", + "lines": 216, + "truncated": false, + "block": 1, + "row": 4934 + }, + { + "path": "merge_gtf_exons.pl", + "sha256": "7d5a4880bd835cd2e769871e3e35a70d3868327c01850f5cafb87416067d752a", + "language": "Perl", + "lines": 54, + "truncated": false, + "block": 1, + "row": 4619 + }, + { + "path": "mergelist.pl", + "sha256": "d3d62e31999bddfecd2493898a30fe62358d63b654672ded21d3570f683c5a1d", + "language": "Perl", + "lines": 67, + "truncated": false, + "block": 1, + "row": 4764 + }, + { + "path": "mergeqc.pl", + "sha256": "ae84788d84cc39246438a230b15303198ea7bdab66c853d2a1f97fc76745686e", + "language": "Perl", + "lines": 72, + "truncated": false, + "block": 1, + "row": 4634 + }, + { + "path": "metaboGroups.r", + "sha256": "f7d9741fc05c862849ea95210ed82c41fb6cdfd13107a768ce416bb2b2018575", + "language": "R", + "lines": 54, + "truncated": false, + "block": 1, + "row": 10146 + }, + { + "path": "mlflow.pl", + "sha256": "6639511f4e3f41aa71fe79ea6e520f8639eeee7c79f47da671b58652dc9137e5", + "language": "Perl", + "lines": 135, + "truncated": false, + "block": 1, + "row": 4856 + }, + { + "path": "mlflowweka.pl", + "sha256": "e6a29ed75ff55fbf1eb0b89a8ac8bc4f6ffd925784f00435b568b145d7fe495e", + "language": "Perl", + "lines": 82, + "truncated": false, + "block": 1, + "row": 4692 + }, + { + "path": "mlp.c", + "sha256": "3f37a513bc758915235f2af8465dcf1ec6978841538ebcddad8ca517728b18e8", + "language": "C", + "lines": 392, + "truncated": false, + "block": 1, + "row": 126 + }, + { + "path": "mm.r", + "sha256": "1cded46bf7d6832172e2cfe53382a3b8dda5c4b35300deb4f3a419c3ff629962", + "language": "R", + "lines": 37, + "truncated": false, + "block": 1, + "row": 9966 + }, + { + "path": "modSpecPep.py", + "sha256": "4b8f1a89802b417eff1583cbbdbd201f40d32f3a272a6e8f6d4fbdff793836d6", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 1, + "row": 5978 + }, + { + "path": "model.pl", + "sha256": "2c01f2304e7ad204cc54ba3d34edcdb3a9bb42752f60661ffb827d19675ed15e", + "language": "Perl", + "lines": 117, + "truncated": false, + "block": 1, + "row": 4786 + }, + { + "path": "model_new.pl", + "sha256": "d6d3ca8f5d2da5951e1e17ed20d5781dac6699a6645023332caa755da8fde957", + "language": "Perl", + "lines": 140, + "truncated": false, + "block": 1, + "row": 4846 + }, + { + "path": "modpy.sh", + "sha256": "fa557617526c80e76954268aab34f59c045df0f9a4b9323f5738cc0f9532a163", + "language": "Shell", + "lines": 39, + "truncated": false, + "block": 1, + "row": 11496 + }, + { + "path": "motif.pl", + "sha256": "82e78fff6da380e4762edaed53a2bf027150384d6fec21e213323d1b7bc65b19", + "language": "Perl", + "lines": 54, + "truncated": false, + "block": 1, + "row": 4697 + }, + { + "path": "motifGen.pl", + "sha256": "3737e54dabcba0764dbc7f4ac48fce5d316d073d13bebde1816d3572a9829525", + "language": "Perl", + "lines": 209, + "truncated": false, + "block": 1, + "row": 4921 + }, + { + "path": "motifSeqAlign.py", + "sha256": "84430a2f4fc989f1d85b744a23bec81cbdec7b1f68f039c86c48e999dfeed562", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 1, + "row": 7707 + }, + { + "path": "motifSeqAlign.r", + "sha256": "df8be5b74e61596f17773c272432be13b5e4662adabed649f2802982c4ed2bae", + "language": "R", + "lines": 31, + "truncated": false, + "block": 1, + "row": 10115 + }, + { + "path": "mpileupcount.pl", + "sha256": "7cab877d5b90c1efa476ac51b870d531c3e6cf69633744e4914e1bfe2930fb88", + "language": "Perl", + "lines": 83, + "truncated": false, + "block": 1, + "row": 4780 + }, + { + "path": "mqcomp.pl", + "sha256": "7af6b2127a3ae574eca055b9c7361831923cd2c67c79500c41ac55e568ec5306", + "language": "Perl", + "lines": 68, + "truncated": false, + "block": 1, + "row": 4651 + }, + { + "path": "mqpepcomp.pl", + "sha256": "66deb8d9a0aa4abccdfa856a2969b1091f77e22e6ea2c26edfd5d1e67ec44778", + "language": "Perl", + "lines": 69, + "truncated": false, + "block": 1, + "row": 4669 + }, + { + "path": "mqrun.sh", + "sha256": "eb134be2aeb44496326499bf61312cef3d50e84d6cdd7f646dca280141c3c5cb", + "language": "Shell", + "lines": 33, + "truncated": false, + "block": 1, + "row": 11676 + }, + { + "path": "mqrunDash.py", + "sha256": "3cdf1c4b0030d08c966284e2b107f93a1dddb6a5e19998b89f0a6ec35cda64cb", + "language": "Python", + "lines": 1287, + "truncated": false, + "block": 1, + "row": 9818 + }, + { + "path": "mqrunDash_db_verify.py", + "sha256": "0aa11cfb05c66b095d433ee79623c676c90dad7de260ca5437d457f0cb2a1912", + "language": "Python", + "lines": 156, + "truncated": false, + "block": 1, + "row": 7826 + }, + { + "path": "mqrunDash_playwright_test.py", + "sha256": "5b923ad1110cc73ffe9658e90e1c8e944c6dc5e275669e968bac77c762805706", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 1, + "row": 7516 + }, + { + "path": "mqrunDash_verify_peptides.py", + "sha256": "ed4da0472422d12c8ae2aa318cf63d52fcd548b5d5c2cb5ae8f097ab44fd4bc2", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 1, + "row": 7029 + }, + { + "path": "mqrunTTP.sh", + "sha256": "40b3fafc92994ef778fa095c08259f95167964031fec0691ef09e9d0d13130cc", + "language": "Shell", + "lines": 35, + "truncated": false, + "block": 1, + "row": 11683 + }, + { + "path": "mqrunTTPdia.sh", + "sha256": "40b3fafc92994ef778fa095c08259f95167964031fec0691ef09e9d0d13130cc", + "language": "Shell", + "lines": 35, + "truncated": false, + "block": 1, + "row": 11683 + }, + { + "path": "mrna-prot-con.pl", + "sha256": "bbde73f06b5893f10c0b5329e37b0bbdad8531d37712df670b16f21f025a7f57", + "language": "Perl", + "lines": 114, + "truncated": false, + "block": 1, + "row": 4812 + }, + { + "path": "ms2ms.m", + "sha256": "6635ed2dfeca7d8b9d9d2ae20d7292b9abb623a698e0a76f4307e43de958aff6", + "language": "MATLAB", + "lines": 210, + "truncated": false, + "block": 1, + "row": 3723 + }, + { + "path": "mseg.m", + "sha256": "62518310135c8fd5933f3647736cdb341f70fb112740af5c5ef9d623460fbad0", + "language": "MATLAB", + "lines": 174, + "truncated": false, + "block": 1, + "row": 3627 + }, + { + "path": "msmsCount.py", + "sha256": "7fe51fe0d61a787173c4383adcdd3517ffa714e5155001a6dd9ca41a5d06c0f6", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 1, + "row": 6132 + }, + { + "path": "multi_layer_perceptron.pl", + "sha256": "b7cce39a8c0527b4f9d333afdc83600d6c10d21abdd6acee0062bafde1688879", + "language": "Perl", + "lines": 223, + "truncated": false, + "block": 1, + "row": 4901 + }, + { + "path": "multimeter.py", + "sha256": "a5c5471f72dbe9d178ca9ee8fab00d9c594159eb438b504d46101f8f158ccd52", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 1, + "row": 6307 + }, + { + "path": "music21.py", + "sha256": "3a42e2eea5042be4a57520948a6df0ad024c50e2e6dab8e10a4251517709cb82", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 1, + "row": 5206 + }, + { + "path": "musicScale.pl", + "sha256": "2bbe589e7726ad9bee4975edced4a3a69a090cef9c7d3dc8cd2bda6aac80e711", + "language": "Perl", + "lines": 29, + "truncated": false, + "block": 1, + "row": 4557 + }, + { + "path": "mutSig.rmd", + "sha256": "ec2818db28134d67a45492ed6427ac7402637186bc159795284c30bc8f91b9a9", + "language": "R", + "lines": 276, + "truncated": false, + "block": 1, + "row": 10431 + }, + { + "path": "mztabCombine.r", + "sha256": "e7a18733dabdd9799e2f69f7c0182aa532b6295ad79725d613e3f1cf0d7c60c3", + "language": "R", + "lines": 67, + "truncated": false, + "block": 1, + "row": 10171 + }, + { + "path": "n50.m", + "sha256": "cc246b74335bfbe4b2219130d1ab059cd35457bf69a696bf7f386fc2f2f54400", + "language": "MATLAB", + "lines": 87, + "truncated": false, + "block": 1, + "row": 3000 + }, + { + "path": "ncdsgbk.pl", + "sha256": "a3e69bbf247b31304a229a07904aedaf961eda1909285f1e54cd91f4d659cda4", + "language": "Perl", + "lines": 131, + "truncated": false, + "block": 1, + "row": 4895 + }, + { + "path": "needle.pl", + "sha256": "7c71b60147f1339b0601740d30fe873501f7237ddfe851e5ca1acb87dd9f9932", + "language": "Perl", + "lines": 95, + "truncated": false, + "block": 1, + "row": 4781 + }, + { + "path": "networkAnalysis.py", + "sha256": "af7640e240ba527c23592e62674c9bfa24cda447f7446b85161e6602af42d11d", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 1, + "row": 6898 + }, + { + "path": "neuroSky.py", + "sha256": "ec7d000fb9604027cd789a75b1b3f93448b8a010253bc8ce80ff81665bfff304", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 1, + "row": 5853 + }, + { + "path": "neuroplay.py", + "sha256": "283d14adbe42ce0df289cafb81c8adf5d421c58e88f6f3f8c14cb4e319f34417", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 1, + "row": 6518 + }, + { + "path": "njoin.pl", + "sha256": "2487b837e09a830f4324220a712e7f202d5654cff261a19a2713bfb9534e1335", + "language": "Perl", + "lines": 84, + "truncated": false, + "block": 1, + "row": 4705 + }, + { + "path": "nmer.pl", + "sha256": "278a0595ab0573cbea2d770d6a9f2d6820c547c33c607ef22cd42199d3c389ab", + "language": "Perl", + "lines": 40, + "truncated": false, + "block": 1, + "row": 4568 + }, + { + "path": "norm.pl", + "sha256": "71c8cf434d9ceb8a1871da99937310d6ca06d6925d1237213516a9d9518b4eee", + "language": "Perl", + "lines": 200, + "truncated": false, + "block": 1, + "row": 4920 + }, + { + "path": "normalize.pl", + "sha256": "54a1f6183e360c885baa594c2a67a62b75c36ecf10fa15a0d69c3504cd3668df", + "language": "Perl", + "lines": 45, + "truncated": false, + "block": 1, + "row": 4660 + }, + { + "path": "nrm.pl", + "sha256": "dfc1eeeb2566efbca16c44af14ebdf4a5c974766c511f8341f3a7da8b1eeda79", + "language": "Perl", + "lines": 44, + "truncated": false, + "block": 1, + "row": 4655 + }, + { + "path": "nrnsys.sh", + "sha256": "40dce67da601556304f5527d18dd7761a314f8a1f97ce4ad231e6101a4e2213c", + "language": "Shell", + "lines": 13, + "truncated": false, + "block": 1, + "row": 11136 + }, + { + "path": "octave.r", + "sha256": "e5c3342d89a2a226b59e05d536035705e63bae61f61867ef6259da1cc9c616d3", + "language": "R", + "lines": 5, + "truncated": false, + "block": 1, + "row": 9896 + }, + { + "path": "offsets.r", + "sha256": "0e761beee2026a955e379b38bb79ddfdfca4cac8ce65d3feb9b25a06b41c733d", + "language": "R", + "lines": 27, + "truncated": false, + "block": 1, + "row": 9981 + }, + { + "path": "ofs2svm.pl", + "sha256": "826a6d37176ae33b94e2a77af517562e3ddf074af3cdae54bc2c76352ca41517", + "language": "Perl", + "lines": 69, + "truncated": false, + "block": 1, + "row": 4585 + }, + { + "path": "one-neuron.py", + "sha256": "750a15229a42f6cd7c6c7c125d97baf92be1e22e444a1be2c2cf52d73f466b56", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 1, + "row": 5395 + }, + { + "path": "online_ftr_sel.pl", + "sha256": "3097aaf0958b32020873a22f57e3f8da0a0b95516c67c320a7328fded6d74eb5", + "language": "Perl", + "lines": 253, + "truncated": false, + "block": 1, + "row": 4916 + }, + { + "path": "openTargetsDis.py", + "sha256": "0c059425c36efda4572defb5ff2576e2d21a65ba08bb7ad6fcc5c6a811fec60c", + "language": "Python", + "lines": 973, + "truncated": false, + "block": 1, + "row": 7991 + }, + { + "path": "outLierDetect.qmd", + "sha256": "814d3e63fdd971145562999632e08bd645d3d1229d365b147837e4af7c015678", + "language": "Quarto", + "lines": 115, + "truncated": false, + "block": 1, + "row": 9889 + }, + { + "path": "outLierDetect.rmd", + "sha256": "3ccc613043eb5ba0b5b515bd66655f7abe598b5805dad4ddc839879a3468d4d0", + "language": "R", + "lines": 188, + "truncated": false, + "block": 1, + "row": 10318 + }, + { + "path": "overlap.pl", + "sha256": "0ac5f53e71926823afd12027a7535f79953c727ef672a9df372c0ff2e26f7917", + "language": "Perl", + "lines": 180, + "truncated": false, + "block": 1, + "row": 4913 + }, + { + "path": "p-align.pl", + "sha256": "622b34421eb31d328037132fb99b1401e178f729f24aecaf0a6ab3947fabb7c6", + "language": "Perl", + "lines": 365, + "truncated": false, + "block": 1, + "row": 4930 + }, + { + "path": "pa2dist.pl", + "sha256": "1f06960e0230fa5da532b309b066715f9269bc4ffaa4a76a48bc5a4a0f1dc9e1", + "language": "Perl", + "lines": 37, + "truncated": false, + "block": 1, + "row": 4555 + }, + { + "path": "pagesDown.py", + "sha256": "5c2101e3fde164a895e54ab6122d4f2ecf8a56edf7554d974d00317bbbe0a9f0", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 1, + "row": 5804 + }, + { + "path": "pair454ext.pl", + "sha256": "334d7606877724df7fc42a38b1b41af2f03a0f3216c0a74bc0c43215c2108f84", + "language": "Perl", + "lines": 42, + "truncated": false, + "block": 1, + "row": 4502 + }, + { + "path": "paletteToHtml.pl", + "sha256": "72d2ff43cd767a96d5d3d6df577870001ed5f32a39875cf6f6744d865ff47a85", + "language": "Perl", + "lines": 100, + "truncated": false, + "block": 1, + "row": 4820 + }, + { + "path": "parallel_get.pl", + "sha256": "20a748d912a503ba94b4fdee764ddebe0d7fbd457a10c9e20c890019812e130c", + "language": "Perl", + "lines": 17, + "truncated": false, + "block": 1, + "row": 4424 + }, + { + "path": "parse-gwas.pl", + "sha256": "356599c6db8c1cffe06c40be96fd215f74eef2a411e44651216fe5025b7b5859", + "language": "Perl", + "lines": 22, + "truncated": false, + "block": 1, + "row": 4441 + }, + { + "path": "parse.pl", + "sha256": "a07e8c1809bd5df4718817a78f27cef65cdfca68adc5c86ee95603695b0ae115", + "language": "Perl", + "lines": 75, + "truncated": false, + "block": 1, + "row": 4643 + }, + { + "path": "parseEEG.py", + "sha256": "a5e2cfca87dbbf611ec31f086a29e27257f1ccd9671e54fabd2362a5217bb5ef", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 1, + "row": 5940 + }, + { + "path": "parseMGFcluster.py", + "sha256": "5fe0252d92504ad73db7588fca83c41690071e7ed0c5ff469802a80da0716560", + "language": "Python", + "lines": 601, + "truncated": false, + "block": 1, + "row": 9396 + }, + { + "path": "parseOFS.pl", + "sha256": "b2241d3786070e90425f7d20e87b77422d7e1ebabf083bc9da91694ec9f3ade8", + "language": "Perl", + "lines": 50, + "truncated": false, + "block": 1, + "row": 4665 + }, + { + "path": "parsePS.pl", + "sha256": "e4928c05585d25ddc5eba523b335fb07227d56a0b63cd063a0a14c0b4e3b54d8", + "language": "Perl", + "lines": 12, + "truncated": false, + "block": 1, + "row": 4385 + }, + { + "path": "parsePages.py", + "sha256": "2d5c42af854179ad2cf8904027088051b0bd8161db8e509ee470de95494d3092", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 1, + "row": 6070 + }, + { + "path": "parseSNPjson.py", + "sha256": "ddd16680b040cd5446b6a0e515b7d1bce2d9e3af2c74e3f41e14607d9ed37211", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5578 + }, + { + "path": "parse_codeml.pl", + "sha256": "2870ca8fe4086fbbe49baf776ffb5e36aaa8297ea7b94375494133ba89fe73a0", + "language": "Perl", + "lines": 39, + "truncated": false, + "block": 1, + "row": 4611 + }, + { + "path": "parseblast.pl", + "sha256": "8bedf764ca273332ffb22048af41a3618d419e1947debf95c9320eaabf8c3150", + "language": "Perl", + "lines": 44, + "truncated": false, + "block": 1, + "row": 4511 + }, + { + "path": "parserunmap.pl", + "sha256": "4faa5f3917c01d10ba5c52b7437f3d0b74fb338753d4c4a48179dc478360a273", + "language": "Perl", + "lines": 96, + "truncated": false, + "block": 1, + "row": 4839 + }, + { + "path": "parserunmapelephantshark.pl", + "sha256": "6f82d3236b1a24cdaf15bb0917819db8444cf1c5a6a227d6ff0e0b03ea39a744", + "language": "Perl", + "lines": 96, + "truncated": false, + "block": 1, + "row": 4830 + }, + { + "path": "parserunmapfugu.pl", + "sha256": "6ae2892e7cb96ea044408364ee06a5fe5565c8879ed44b74649dbd4d061087ad", + "language": "Perl", + "lines": 96, + "truncated": false, + "block": 1, + "row": 4848 + }, + { + "path": "parserunmapmedaka.pl", + "sha256": "ac28976ad69493d31e850357ef010946456f26295a52dac2ed7ee92d84b08c92", + "language": "Perl", + "lines": 97, + "truncated": false, + "block": 1, + "row": 4845 + }, + { + "path": "parserunmapsticklebac.pl", + "sha256": "23090e08b4662bab471eb74d1c1761317b614fd450e7c83f48323299bf5e7352", + "language": "Perl", + "lines": 204, + "truncated": false, + "block": 1, + "row": 4922 + }, + { + "path": "parserunmapstickleback.pl", + "sha256": "10ae8727d0d906868ce16ebc16a8b30b287832e9156b7494f48f9643b0580e08", + "language": "Perl", + "lines": 147, + "truncated": false, + "block": 1, + "row": 4893 + }, + { + "path": "parserunmaptetraodon.pl", + "sha256": "ca4a688176dbe1396857ff0f41f050f78969ce1acb5f1789bcf1a7a64d148250", + "language": "Perl", + "lines": 98, + "truncated": false, + "block": 1, + "row": 4840 + }, + { + "path": "parserunmapzebrafish.pl", + "sha256": "b9a9c996cabf825056be3af78ce173407f1e12cafdd2e82524baea700eb55369", + "language": "Perl", + "lines": 127, + "truncated": false, + "block": 1, + "row": 4885 + }, + { + "path": "pathImgClassifier.py", + "sha256": "308473d524de8940dcc881b6c02a1352ab0f8fcb1ca40f95e8d3e2267c65d71f", + "language": "Python", + "lines": 219, + "truncated": false, + "block": 1, + "row": 7998 + }, + { + "path": "pattern2.pl", + "sha256": "afeb61cdc967d5d015b05445c8ca922a9701999f73c8d1c9c957e9f376cbafad", + "language": "Perl", + "lines": 78, + "truncated": false, + "block": 1, + "row": 4766 + }, + { + "path": "pb.pl", + "sha256": "41a87b7119254bafbe6b2d27930c23c7bbc6442cbcaf81b86500ca0028bc8e51", + "language": "Perl", + "lines": 67, + "truncated": false, + "block": 1, + "row": 4796 + }, + { + "path": "pb3.pl", + "sha256": "9c7068207d29da2d5f2234e4c7272110fb1cff8d362f8182647e5e4077903062", + "language": "Perl", + "lines": 39, + "truncated": false, + "block": 1, + "row": 4605 + }, + { + "path": "pbo.pl", + "sha256": "dce81bb0936a49c0ee86ea0d6e67e4cd0b2c8896a8d6aba3583bf2c5a1cca58c", + "language": "Perl", + "lines": 43, + "truncated": false, + "block": 1, + "row": 4552 + }, + { + "path": "pca2.r", + "sha256": "c5d01545b0d6db436c33a420afa62fc1ae4cf38d0306ef7ddeef7f4c80d2bfc1", + "language": "R", + "lines": 23, + "truncated": false, + "block": 1, + "row": 9946 + }, + { + "path": "pdb.pl", + "sha256": "a45fbac3ee31240daa19c083be9b571c24f7124cc32722f25da4bde3300cd39d", + "language": "Perl", + "lines": 33, + "truncated": false, + "block": 1, + "row": 4572 + }, + { + "path": "pdb1.pl", + "sha256": "b163dadcfe8beeeb8f57deb99aa534d4ee0099aff11e9028db864b31908b916b", + "language": "Perl", + "lines": 29, + "truncated": false, + "block": 1, + "row": 4498 + }, + { + "path": "pdb2fasta.pl", + "sha256": "6603259f59d43c849131addc5ac28ee2232d3bf68daf161aafc7b13046f762d5", + "language": "Perl", + "lines": 52, + "truncated": false, + "block": 1, + "row": 4672 + }, + { + "path": "pdb_chain_extract.pl", + "sha256": "ee7afc17925fbd9fdf93347551c8f6986a6499b8eb53b0260326952207fc6082", + "language": "Perl", + "lines": 114, + "truncated": false, + "block": 1, + "row": 4866 + }, + { + "path": "pdbce.pl", + "sha256": "4f3d1df1f6dfef29d1da92738d4b72bee2edf7a75a2c474fca1052656bbc2ff3", + "language": "Perl", + "lines": 129, + "truncated": false, + "block": 1, + "row": 4836 + }, + { + "path": "pdmqcomp.pl", + "sha256": "1cdce096d5c2512839ec8b25cab5ccf38a910aadbf5dedf57ed80cd574166c54", + "language": "Perl", + "lines": 55, + "truncated": false, + "block": 1, + "row": 4616 + }, + { + "path": "pdpevolptm.pl", + "sha256": "619c1e8d9e1b77c0f85897a907371c6cdd67af0864ae69131d95f659d76ff121", + "language": "Perl", + "lines": 60, + "truncated": false, + "block": 1, + "row": 4644 + }, + { + "path": "pegfinder.m", + "sha256": "af0d927fa8cb55b30b8125879f77cb2313278fc8e77086b91817d709d1486bf1", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 1, + "row": 2641 + }, + { + "path": "pep2protPTM.pl", + "sha256": "3bec609a1ccd61ece9ce659ed30c8f5589e062aca344431f829857c1a7f36f81", + "language": "Perl", + "lines": 49, + "truncated": false, + "block": 1, + "row": 4647 + }, + { + "path": "pep2protmap.pl", + "sha256": "569433e32b2d6ae61a3efb99cceb3a36b327950b9c6be11b94623a7b1cf56c0f", + "language": "Perl", + "lines": 84, + "truncated": false, + "block": 1, + "row": 4892 + }, + { + "path": "pepCleave.pl", + "sha256": "3ba9c6ae13e2a6868df93124278ed5c04c5701ca19f6d7642928856bb6ceb757", + "language": "Perl", + "lines": 127, + "truncated": false, + "block": 1, + "row": 4864 + }, + { + "path": "pepCleave.py", + "sha256": "fb350329ed50d543091590cb52e377f27fc1a4173f8df5bf7bacb546b9f05c62", + "language": "Python", + "lines": 139, + "truncated": false, + "block": 1, + "row": 7330 + }, + { + "path": "pepCount.py", + "sha256": "a176580bb85de3aa4dbee9fda6eb7f2843802d2495d284ed756dc3dc0652cb53", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 1, + "row": 6222 + }, + { + "path": "pepCountTTP.py", + "sha256": "3589472e488035fa3110b74b9e9cc4948cfbd5da81df75db42e200cb47f08412", + "language": "Python", + "lines": 370, + "truncated": false, + "block": 1, + "row": 9057 + }, + { + "path": "pepFrag.py", + "sha256": "fdda8082fbf28aa8e5f3fbd26973fc982b0c9385eacf51d36c3389beed2f880c", + "language": "Python", + "lines": 168, + "truncated": false, + "block": 1, + "row": 7615 + }, + { + "path": "pepIntSum.py", + "sha256": "8b236f376117591a3408c1b9e28513327ff2285a747f8df535c31cce380a7d99", + "language": "Python", + "lines": 595, + "truncated": false, + "block": 1, + "row": 9441 + }, + { + "path": "pepMap.py", + "sha256": "209a5016313be35ba27c757f4eaa0a52aad0023e6ae87df0c5509f9ee3999e0d", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 7244 + }, + { + "path": "pepProtMap.py", + "sha256": "e243975a3c2fd4b524d63c64110df05a825ba75095cda155f3885b47b401d6a3", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 1, + "row": 7439 + }, + { + "path": "pepQuanProtMap.py", + "sha256": "28cef1ee23aae39ec9f4e16f5c0a3497270cc1e05a814a174cff74c9a0354781", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 1, + "row": 6421 + }, + { + "path": "pepSearch.py", + "sha256": "f37fc2ebdbdc9cf9ae80fc9425b7f96d054dbb1309ca3805b349b3c02f92479c", + "language": "Python", + "lines": 223, + "truncated": false, + "block": 1, + "row": 8203 + }, + { + "path": "pepStatePTM.py", + "sha256": "e74e7470694b4055796409bf2a2a0ae0beaa92c99389a683af9ac39eb37f9e50", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 1, + "row": 5801 + }, + { + "path": "pepXscoreProtMap.py", + "sha256": "b2fe61b940048ce8abe1240c89ff2e41f18b991c14078db5d7df1d2b8dc1a942", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 1, + "row": 8155 + }, + { + "path": "peparea.m", + "sha256": "5de4da440cbb81ba786ea6ec91a14134f88b2171ee5430e4562a5b99658d270e", + "language": "MATLAB", + "lines": 93, + "truncated": false, + "block": 1, + "row": 3261 + }, + { + "path": "pepcleave.m", + "sha256": "9c5ff31edde2e98e94ced92ac38db3ee2605f5e51822ac1bda07e6fbcc984e65", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 1, + "row": 2667 + }, + { + "path": "pepcleavesite.pl", + "sha256": "43c4b264efbfe02d2328c0e76e4e4d703440891ab0b180e52fa59fff2057584f", + "language": "Perl", + "lines": 37, + "truncated": false, + "block": 1, + "row": 4565 + }, + { + "path": "pepcomp.pl", + "sha256": "8bb41e20e31a2f9f7022505de6858b1eaf1189df1458cac4ebcab6ea296601c7", + "language": "Perl", + "lines": 81, + "truncated": false, + "block": 1, + "row": 4707 + }, + { + "path": "pepmap.m", + "sha256": "5531b4b567d289c78db1be41d82f0fd59a8e1bbf67203119b173037858c2063a", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 1, + "row": 2829 + }, + { + "path": "pepmixlfq.m", + "sha256": "a149af6b6471c0fe84fca1d45488118693553403b2be9bfdeeccc6aa6f1af27e", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 1, + "row": 2928 + }, + { + "path": "peptide2uniprot.pl", + "sha256": "f75b7255d366e318998d22759f7d7cecd58d3599576b6bb2b57fedcdbedf3bef", + "language": "Perl", + "lines": 57, + "truncated": false, + "block": 1, + "row": 4582 + }, + { + "path": "peptideCCS.py", + "sha256": "e16435367a74ea7a3ce0fbb12307e50881cace84d82a90d0a1669d7842ac1cc1", + "language": "Python", + "lines": 578, + "truncated": false, + "block": 1, + "row": 9517 + }, + { + "path": "peptideGroups.r", + "sha256": "c582e8c4a01ef94e6c974a9bb63cf501b891d239e20144e1b35c9410eb5a17b9", + "language": "R", + "lines": 270, + "truncated": false, + "block": 1, + "row": 10499 + }, + { + "path": "peptideGroupsCombine.py", + "sha256": "61e6186156ff77118677418bb611a3f4d4091b0b809dbdbbc44e98d1a32a1514", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 1, + "row": 7368 + }, + { + "path": "peptideGroupsCombineTTP.py", + "sha256": "4b61128abd5a411f9435c67ef3b6f653696db7ede85564a3a6261c86b7e6446a", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 1, + "row": 6712 + }, + { + "path": "peptideGroupsMQDIANNcombine.py", + "sha256": "62754ca4b73d92648a9deda14e0cc7164fae9be05a8cd1e0d40f55b6b4b7a24b", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 6268 + }, + { + "path": "pfname.pl", + "sha256": "c27778ad688669ee1c13a358c9eb4a2a4803ed0c473857d85e578766908c0383", + "language": "Perl", + "lines": 44, + "truncated": false, + "block": 1, + "row": 4681 + }, + { + "path": "pfseqsep.pl", + "sha256": "0cb8e51989d1740230056da652092f8115cb925ad942ffaef4fbfc318a316248", + "language": "Perl", + "lines": 52, + "truncated": false, + "block": 1, + "row": 4714 + }, + { + "path": "pfwaexome.pl", + "sha256": "e25a46636bf14d2e3eeee70fab1e1653edd65c0bf41be789327e37ac7c30d23d", + "language": "Perl", + "lines": 83, + "truncated": false, + "block": 1, + "row": 4819 + }, + { + "path": "phylogeny.pl", + "sha256": "9e4288587fa5d8d4b4c1ff705078fe991c42224fff10356796c9f50a7c8974f7", + "language": "Perl", + "lines": 277, + "truncated": false, + "block": 1, + "row": 4943 + }, + { + "path": "picktpfs.pl", + "sha256": "86582da86bba3415db29bed6423e65f2c45b9af27cd76712460de0641532aa52", + "language": "Perl", + "lines": 205, + "truncated": false, + "block": 1, + "row": 4899 + }, + { + "path": "picktpfsn.pl", + "sha256": "7d27ef607fd5e9fa0616623c25907fabb3f34d5d0c7858c4ec3f2cb781903875", + "language": "Perl", + "lines": 101, + "truncated": false, + "block": 1, + "row": 4816 + }, + { + "path": "picktprs.pl", + "sha256": "0049cedc175a8579a0ec5e170cef114610ecc813782b9e2d0026e58ee4b61b9d", + "language": "Perl", + "lines": 195, + "truncated": false, + "block": 1, + "row": 4888 + }, + { + "path": "picktprsn.pl", + "sha256": "ae3f628d601a290a277364c17b1db783893ae1c2b6ea691b445e0b1383a8a76d", + "language": "Perl", + "lines": 101, + "truncated": false, + "block": 1, + "row": 4817 + }, + { + "path": "picrgb.pl", + "sha256": "549a8c17ef6b9ec9170469b1f1ad6ae9f8568537e6f1dcefdef27264d1c841b4", + "language": "Perl", + "lines": 74, + "truncated": false, + "block": 1, + "row": 4732 + }, + { + "path": "picrrest.pl", + "sha256": "f0e108a06bdaf5ffc470a87b1d26edbc71731186f35254ca40bfa5d0d120680b", + "language": "Perl", + "lines": 33, + "truncated": false, + "block": 1, + "row": 4496 + }, + { + "path": "picseq.pl", + "sha256": "b11902cc74b7079be19c99c296a82ee332233ddb69deb7ed9236e6e2d018e6f2", + "language": "Perl", + "lines": 53, + "truncated": false, + "block": 1, + "row": 4573 + }, + { + "path": "picseqm2gn.pl", + "sha256": "f46635382e108cec0b5f1fd957e2fd649775e08f0302bd258413913d4e7e7142", + "language": "Perl", + "lines": 72, + "truncated": false, + "block": 1, + "row": 4686 + }, + { + "path": "picseqm2gn_qual.pl", + "sha256": "6848f6b6e7e6adec90176fcafe23a4f698cb10fec1467008736764a3099603e0", + "language": "Perl", + "lines": 70, + "truncated": false, + "block": 1, + "row": 4674 + }, + { + "path": "pir2fas.pl", + "sha256": "8c7e351b86d59d5127a4721732edc8bf9d3d356f08c5e81659c03e29324b69d2", + "language": "Perl", + "lines": 16, + "truncated": false, + "block": 1, + "row": 4453 + }, + { + "path": "pkl2mgf.pl", + "sha256": "7fb34435b089ca6f383cba0de6fddc146c92424b5b77f21b4819c96214d09051", + "language": "Perl", + "lines": 11, + "truncated": false, + "block": 1, + "row": 4423 + }, + { + "path": "plasintergenic.pl", + "sha256": "ec7ac2443efa899a5037cbbbebec4a785f4d88a5a8c362140cff23dde77dd4fc", + "language": "Perl", + "lines": 137, + "truncated": false, + "block": 1, + "row": 4900 + }, + { + "path": "plate2row.m", + "sha256": "8989376c63e073ed03e1dc3c63067c5e296924a4eb95295694b8f8d9e8f4e126", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 1, + "row": 2470 + }, + { + "path": "plot-contigs.sh", + "sha256": "c48d0258ff46df20f516ff4c4d4a272e66ebeb87b77df8a2b77c7f6469ec9f48", + "language": "Shell", + "lines": 18, + "truncated": false, + "block": 1, + "row": 11152 + }, + { + "path": "plot.pl", + "sha256": "aad45fda668f59b5d370901a9f33437350d1d26c14d09e44f67036f5d82f4f76", + "language": "Perl", + "lines": 8, + "truncated": false, + "block": 1, + "row": 4387 + }, + { + "path": "plotDEG.py", + "sha256": "3d83e862ec52fbdda732845131e82c4f079630ff38afdd63d0d359e6736e06ee", + "language": "Python", + "lines": 195, + "truncated": false, + "block": 1, + "row": 8173 + }, + { + "path": "plotPSM.py", + "sha256": "137a6b14e30515ff379b5def94b0dee5ce0110e1ad844666bac28b97bf30ce1a", + "language": "Python", + "lines": 451, + "truncated": false, + "block": 1, + "row": 9259 + }, + { + "path": "plotPSMdash.py", + "sha256": "f19fa978aa9e1056b1c5e3798a5378d4f764efdba4684d998235ac6543675780", + "language": "Python", + "lines": 417, + "truncated": false, + "block": 1, + "row": 9284 + }, + { + "path": "plotVenn.py", + "sha256": "ef8c79a203b2a0adcdfac7068b12e0f780f6113d65800208fd15d2079c8a3c71", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 1, + "row": 5700 + }, + { + "path": "plotbacpairhit.r", + "sha256": "1662afffed604e3cfe3b9ab59c17a3e325942598e9cd0bac7844a925618f13d3", + "language": "R", + "lines": 62, + "truncated": false, + "block": 1, + "row": 10207 + }, + { + "path": "plotconnlayer.py", + "sha256": "63189ff150c112466279e0074eafe29b654f6f0fa118f83685c17e5b7d226e63", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 1, + "row": 5556 + }, + { + "path": "plotdep.r", + "sha256": "b6de7b9f8f07868038bdaa6924d139fd19a71513780e72b7428037b2af17c176", + "language": "R", + "lines": 13, + "truncated": false, + "block": 1, + "row": 9927 + }, + { + "path": "plothist.r", + "sha256": "90b975fcfa14dc8461db6bc5cd7fd8d84b8cd6e84f42f4be71fb4e24db36b75c", + "language": "R", + "lines": 10, + "truncated": false, + "block": 1, + "row": 9975 + }, + { + "path": "plotxy.r", + "sha256": "6965899ad91d8af3f9ce1e91029de96dc140d318621d20596d9ff52b96a4e1f7", + "language": "R", + "lines": 17, + "truncated": false, + "block": 1, + "row": 9918 + }, + { + "path": "pos2var1.pl", + "sha256": "1c643ab52b6b6e4a1e21bcf2e234e9722a7cadb4461c71dc2775a7b29f3ab2ea", + "language": "Perl", + "lines": 44, + "truncated": false, + "block": 1, + "row": 4641 + }, + { + "path": "pr.pl", + "sha256": "b9763460015353f59173c52e4bd98bf944cf8d74acab6d8fac8a40a17c0963f2", + "language": "Perl", + "lines": 64, + "truncated": false, + "block": 1, + "row": 4728 + }, + { + "path": "pr5_m.pl", + "sha256": "7e4faa667d5923e5e43a18d9c466da322d4d40832a589a0555656a36847ddbd7", + "language": "Perl", + "lines": 54, + "truncated": false, + "block": 1, + "row": 4747 + }, + { + "path": "pr_cho.pl", + "sha256": "aeb47617fe2dc34f580168da310c646a55ed8d07a2a30f65d74735a1bac5860e", + "language": "Perl", + "lines": 54, + "truncated": false, + "block": 1, + "row": 4729 + }, + { + "path": "predPHOsite.rmd", + "sha256": "b0fc5a2ee965d355a476b6ac7f8f371e52f4512a25c46959c196adc82bb9af9c", + "language": "R", + "lines": 711, + "truncated": false, + "block": 1, + "row": 10554 + }, + { + "path": "predict.lme.r", + "sha256": "d0135f61cab68af646e2041527918d6ed8cb1f11102475597ace5f1d151f4697", + "language": "R", + "lines": 8, + "truncated": false, + "block": 1, + "row": 9913 + }, + { + "path": "predictNA.py", + "sha256": "233d4bcf4b57e3a264ceb129367c2dafeca6fedd2b81ba24ff4e7e7396c2cd77", + "language": "Python", + "lines": 182, + "truncated": false, + "block": 1, + "row": 7560 + }, + { + "path": "prime.pl", + "sha256": "70992dabe5c8af7add735adae4b3f22b77d7789f190a3e9db9810bd7777817f9", + "language": "Perl", + "lines": 11, + "truncated": false, + "block": 1, + "row": 4388 + }, + { + "path": "probMod.py", + "sha256": "43e606d8b9cd7f5f454bd46f753e67a5d21955dfc81e6bfc8d2c2741c28215d8", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 1, + "row": 5995 + }, + { + "path": "probMod.r", + "sha256": "903a4982b90b1a865836c309e392ad61790c7f911fc2e2ce5006ef8c470ddf85", + "language": "R", + "lines": 58, + "truncated": false, + "block": 1, + "row": 10193 + }, + { + "path": "prot2pep.pl", + "sha256": "2d0071a02a5aa63733d47ca01168ec35795621514a903631bd6a4c1381267c16", + "language": "Perl", + "lines": 41, + "truncated": false, + "block": 1, + "row": 4521 + }, + { + "path": "protCopyNum.py", + "sha256": "b86f8c590b0749e3d0ea5747419ef1a6bbeb11af4d89975fcbcf171e96546ec7", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 1, + "row": 5729 + }, + { + "path": "protGym.py", + "sha256": "da920332782d3e62697f9520843799ebba3ad8f1dfa407b3ec4abaa5ae791184", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 1, + "row": 6798 + }, + { + "path": "protareacomp.m", + "sha256": "3f030d29da4a9b17380f70acc1e679ee0ab057a8fdd15fbf9dae86548c4dee65", + "language": "MATLAB", + "lines": 99, + "truncated": false, + "block": 1, + "row": 3250 + }, + { + "path": "protcleave.pl", + "sha256": "669742e1e3e67fac09c99f6433f10f7640b3e3aa19f348c41bae327b950e518e", + "language": "Perl", + "lines": 36, + "truncated": false, + "block": 1, + "row": 4477 + }, + { + "path": "proteinExprTest.r", + "sha256": "a8c337d6ab6eb483c66ae2f863a80c16c4242cc7e92ad1143a300d2069e1e238", + "language": "R", + "lines": 356, + "truncated": false, + "block": 1, + "row": 10558 + }, + { + "path": "proteinGroups.r", + "sha256": "f1e99288f131c2c08a1a339987715759fc43847c8e55de2fbff1187aabf09878", + "language": "R", + "lines": 291, + "truncated": false, + "block": 1, + "row": 10512 + }, + { + "path": "proteinGroupsANOVA.r", + "sha256": "5875076617972f54861097793b4a04c5aa273910bcb8b62969fca0f61e323f07", + "language": "R", + "lines": 123, + "truncated": false, + "block": 1, + "row": 10298 + }, + { + "path": "proteinGroupsBatchCorrection.py", + "sha256": "c1d2e361bb0688b76052bbb1df223c0ce7a067e0595dfed9a7aa5339fa058feb", + "language": "Python", + "lines": 1057, + "truncated": false, + "block": 1, + "row": 9750 + }, + { + "path": "proteinGroupsCombine.py", + "sha256": "fd29e62a1b0bff11407fcae846fbbcc309f8afa48efb42a5be4297dbb624739a", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 1, + "row": 6929 + }, + { + "path": "proteinGroupsCombineDIANN.py", + "sha256": "9f6b3dacd76019ddc0cf529ec0f7cd0cfb25d11de8f834e1b5414848f3ed1c8a", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 1, + "row": 6352 + }, + { + "path": "proteinGroupsCombineFP.py", + "sha256": "357ab72c5b7704b74740ef7e0cd23ca52a792cf78cd7bc828e8fb21e22270e76", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 1, + "row": 6346 + }, + { + "path": "proteinGroupsCombinePD.py", + "sha256": "43e3165de23e3cd672eea0142d4837634a8cd9280a073ff236d6b7918c8db197", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 1, + "row": 6417 + }, + { + "path": "proteinGroupsCombineTTP.py", + "sha256": "bd32a680024f398efa381744949a5c7a5d313db94279d98cccb202c18e912843", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 1, + "row": 6562 + }, + { + "path": "proteinGroupsCompareTTP.py", + "sha256": "359de7c90b089d2bd6d2e0916de0bfd3222bc532a767b4bfc9a24bc3b93b882b", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 1, + "row": 6540 + }, + { + "path": "proteinGroupsFit.py", + "sha256": "564e85b3d67dbf989ef150d5e626debd00dd1b1e97510452e46ea7ea8f6b448d", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 1, + "row": 7659 + }, + { + "path": "proteinGroupsMQtesorAIcombine.py", + "sha256": "fe0295914cf41d45f69068dfd9832069eed3e8423ad6383bf27510edd08d71a7", + "language": "Python", + "lines": 249, + "truncated": false, + "block": 1, + "row": 8542 + }, + { + "path": "proteinGroupsNormGene.r", + "sha256": "e8574bfac46196237aaf8cb32bc1131e069de61ac18de58fc3aadfdc0939302e", + "language": "R", + "lines": 36, + "truncated": false, + "block": 1, + "row": 10071 + }, + { + "path": "proteinGroupsPASER.r", + "sha256": "bc6025be3af1b4aadfc92d00424241819d3e7a7bc5a19c0ac52be44f61eacaf6", + "language": "R", + "lines": 121, + "truncated": false, + "block": 1, + "row": 10279 + }, + { + "path": "proteinGroupsPD.r", + "sha256": "af9875a5631cbc6c90f4bb9a7e293e9505237514279175c216f01a7adc8bddb4", + "language": "R", + "lines": 125, + "truncated": false, + "block": 1, + "row": 10311 + }, + { + "path": "proteinGroupsQC.r", + "sha256": "7246fb59d40d88a2c369a12e9063c1bab6b572a96b4ed9c039ecdddf94d53935", + "language": "R", + "lines": 135, + "truncated": false, + "block": 1, + "row": 10316 + }, + { + "path": "proteinGroupsSelect.py", + "sha256": "959e64df57332719e28dcc96ccc72b78a2e3cc04029caa3eb56d1812be75e86f", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 6087 + }, + { + "path": "proteinGroupsSplit.r", + "sha256": "a0b66c4352d84d042248c665eac640fce896d1469381174d91b1cf32f39ee72a", + "language": "R", + "lines": 112, + "truncated": false, + "block": 1, + "row": 10277 + }, + { + "path": "proteinGroupsTS.py", + "sha256": "b5a658952bfe45f3d9ca5698fef521bb6276df59b909b2ac193889c5c907d361", + "language": "Python", + "lines": 1195, + "truncated": false, + "block": 1, + "row": 9756 + }, + { + "path": "proteinGroupsTS.r", + "sha256": "6969e24844b2e8186f5891a914505293f61ff3f4ad1cbc9f0279be2a018f54d6", + "language": "R", + "lines": 178, + "truncated": false, + "block": 1, + "row": 10361 + }, + { + "path": "proteinGroupsTtest.r", + "sha256": "55b8a687ed530130bdb41a78e610e64c348a180fac6f8e735b5e783fd8f56b72", + "language": "R", + "lines": 76, + "truncated": false, + "block": 1, + "row": 10206 + }, + { + "path": "proteinGroupsTtestCombine.py", + "sha256": "440910d5d9abcb62d1db83d38eec5c9ac5a1c644570961767d967f9b1b79252e", + "language": "Python", + "lines": 133, + "truncated": false, + "block": 1, + "row": 8264 + }, + { + "path": "proteinGroupsTtestCombine.r", + "sha256": "9c650afb0dad2f05fc53eb07eae08b31323010d305392b8fb6f46ec47ec4e083", + "language": "R", + "lines": 51, + "truncated": false, + "block": 1, + "row": 10157 + }, + { + "path": "proteinGroupsVSN.qmd", + "sha256": "6c5119537184ab6756d49bbb89a16530601b1a4af7d07cf8a2a08f980ad91d68", + "language": "Quarto", + "lines": 580, + "truncated": false, + "block": 1, + "row": 9892 + }, + { + "path": "proteinGroupsVSN.r", + "sha256": "d7b9ca36320a948aacabf85643912a726ad324aac4ea61922744d28580863fca", + "language": "R", + "lines": 54, + "truncated": false, + "block": 1, + "row": 10117 + }, + { + "path": "proteinGroupsViolin.r", + "sha256": "c6302404ebdcbbfd4a081db52f6d769f0211ee7cd2565713833dde0c9acab3f5", + "language": "R", + "lines": 116, + "truncated": false, + "block": 1, + "row": 10334 + }, + { + "path": "proteinSequenceProperties.py", + "sha256": "9ffefc1f611422089581a6a95c5bf6fb1833507a7ba364e83a02a6f3a33a3061", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 1, + "row": 6736 + }, + { + "path": "proteinSequenceProperties.r", + "sha256": "be403b59ca1620f297205c42823bab29bef33dd43a8e54b4704e1af12769f709", + "language": "R", + "lines": 69, + "truncated": false, + "block": 1, + "row": 10186 + }, + { + "path": "proteins.nb", + "sha256": "d8c9d767662490bcbf033c794e096808ca5abe443d42fa594a272c9bc7cb7418", + "language": "Mathematica", + "lines": 10, + "truncated": false, + "block": 1, + "row": 4364 + }, + { + "path": "proteins.r", + "sha256": "5b2dc08e05ee5d226aa0d0b5f3a046fb45d75a21e9a1a21ffb492f0c2878207b", + "language": "R", + "lines": 144, + "truncated": false, + "block": 1, + "row": 10356 + }, + { + "path": "prox.pl", + "sha256": "9f0240726c220f5328283f32c4fa4f495d2a4a73e2c0a68d6155da3d0075bb82", + "language": "Perl", + "lines": 40, + "truncated": false, + "block": 1, + "row": 4664 + }, + { + "path": "ps1.pl", + "sha256": "941ca7f2e98895ed178bf661b920ed5e7fbf98867001d55eb58e4d586c6086ed", + "language": "Perl", + "lines": 42, + "truncated": false, + "block": 1, + "row": 4500 + }, + { + "path": "psmCombineTTP.py", + "sha256": "2f729c2517212324ecaec9a2cb2152d07a13dbde95cb297a5e7dbb4ecb5a86e3", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 1, + "row": 6799 + }, + { + "path": "ptm2motif.pl", + "sha256": "bec995baf6c176eaf31028b8818592ffe1b55d59d9e8c8d4c8c1f8209824119c", + "language": "Perl", + "lines": 30, + "truncated": false, + "block": 1, + "row": 4545 + }, + { + "path": "pts.r", + "sha256": "c217eeb53d23376d702986b598e5c8f5b164de4b943a4c0a1df21f3e9db5e99a", + "language": "R", + "lines": 60, + "truncated": false, + "block": 1, + "row": 10053 + }, + { + "path": "pubparser.pl", + "sha256": "826965146910e20f4fe6faf95e503b1a5081c7405dcd70c31c085b0671a6d567", + "language": "Perl", + "lines": 53, + "truncated": false, + "block": 1, + "row": 4584 + }, + { + "path": "pullMatchRegion.pl", + "sha256": "201421f48cc36c0cc2e9ce959f231049cd17f8c3d27291b8324b22ac795e7eda", + "language": "Perl", + "lines": 25, + "truncated": false, + "block": 1, + "row": 4499 + }, + { + "path": "pval.r", + "sha256": "ea518a1ef63515ace5990dfede38ca431a1e95b81af1fbf93b2bb5deccab38a6", + "language": "R", + "lines": 36, + "truncated": false, + "block": 1, + "row": 9988 + }, + { + "path": "qdel.pl", + "sha256": "4df538f01831e77f0596028806a4c2bd0223fed66d023cc9bfd3edc5e63f1d0f", + "language": "Perl", + "lines": 11, + "truncated": false, + "block": 1, + "row": 4379 + }, + { + "path": "quantR.rmd", + "sha256": "757f3d2d14441f83f9ef9a322603764948b5ddfc69f8f6596535984d5018c096", + "language": "R", + "lines": 38, + "truncated": false, + "block": 1, + "row": 10010 + }, + { + "path": "rand.py", + "sha256": "5d7780cf0167b00257555a760f72f019eae72d1c762e848c023764dfb2288fd1", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 1, + "row": 5213 + }, + { + "path": "rank.pl", + "sha256": "01afdf2d1c4b4fcfdc77ed7aceb37c006170f347048a618f24e6687ce3112c1a", + "language": "Perl", + "lines": 40, + "truncated": false, + "block": 1, + "row": 4615 + }, + { + "path": "rats.stan", + "sha256": "fac84668a5fbc8e79c7918b75085a2971525caad0cf63e4f889ebed368e58e1e", + "language": "Stan", + "lines": 47, + "truncated": false, + "block": 1, + "row": 11759 + }, + { + "path": "rawReadMZML.py", + "sha256": "c4601dabab01be734ea3650adae4b35e71d4be0b53bf3a7c5bb0a09d4838093b", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 1, + "row": 6773 + }, + { + "path": "rd.pl", + "sha256": "fa2c94c6882f7e1af9752f75f61b7f2ac714b93998cd7725feaa3a9496176949", + "language": "Perl", + "lines": 182, + "truncated": false, + "block": 1, + "row": 4902 + }, + { + "path": "readFasta.py", + "sha256": "43202ed6f89114cfab910e0eb7b9fa39494c9488ab87c11547aaa38b03b703bc", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 1, + "row": 5209 + }, + { + "path": "readdistrib.pl", + "sha256": "5dd6b231a2433dbbb512c05209a8b2ba836e98abf0c28d4a8dc1f06ad44f98af", + "language": "Perl", + "lines": 54, + "truncated": false, + "block": 1, + "row": 4553 + }, + { + "path": "relation.pl", + "sha256": "dda0ee7a6e6ffc776456eb1c905fb46de0de7ef9f6b6bd3359fde99572b848fd", + "language": "Perl", + "lines": 43, + "truncated": false, + "block": 1, + "row": 4715 + }, + { + "path": "remove-duplicate-gene.pl", + "sha256": "9754f7fd625c6ff74f2cb929cdfaf6fdc919b7287440148a6cc06012c59a8119", + "language": "Perl", + "lines": 57, + "truncated": false, + "block": 1, + "row": 4653 + }, + { + "path": "remove_xrefs.pl", + "sha256": "e79f1a61f1d16907210c416201f1e04184234632470bd397c20021886ba4d036", + "language": "Perl", + "lines": 8, + "truncated": false, + "block": 1, + "row": 4373 + }, + { + "path": "repeat_gss.pl", + "sha256": "c403146ebc1544716a16f93ca0704628670d05fe6116049f56babed58287801a", + "language": "Perl", + "lines": 104, + "truncated": false, + "block": 1, + "row": 4823 + }, + { + "path": "repeat_parse.pl", + "sha256": "d2d1e31f44bf25e7f1a3e3d12bbf12e8cfba45adaf62e786729348ca94bd31d6", + "language": "Perl", + "lines": 32, + "truncated": false, + "block": 1, + "row": 4542 + }, + { + "path": "replacetext.sh", + "sha256": "a4d7a6f584266a9f8259c2a0c409a0d3dc978cdeb40b48f733cd5569cf2b6dab", + "language": "Shell", + "lines": 7, + "truncated": false, + "block": 1, + "row": 11133 + }, + { + "path": "reproduceFigure.py", + "sha256": "ec7d033d9bb67c191f46928575b2ac82fe5b3e38d9888bf6437c32622130fce0", + "language": "Python", + "lines": 443, + "truncated": false, + "block": 1, + "row": 9201 + }, + { + "path": "reshuffle.pl", + "sha256": "6bbe394d4921e5f85e220f8babe60e4fbd7be7c0205c687cf73c8bad8fb9a6c3", + "language": "Perl", + "lines": 37, + "truncated": false, + "block": 1, + "row": 4621 + }, + { + "path": "result_set_closing_test.r", + "sha256": "76b76bb072f7c77f29ddbe3c9b1d33b4428b324e062784c255069cb358499690", + "language": "R", + "lines": 46, + "truncated": false, + "block": 1, + "row": 10015 + }, + { + "path": "resultsGroupby.py", + "sha256": "d9fec70f78cbeb2a964117bf7ec26280d28c19c7cc925b89cb9b0fc8a1f79310", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 1, + "row": 6349 + }, + { + "path": "resultsImputeby.py", + "sha256": "15e3dfd5d55abf99a88a3c7db76fd7cae60f01e53e934da73e727c65e77f2304", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 1, + "row": 6581 + }, + { + "path": "retention.m", + "sha256": "04a7fdc6433a671581e71a4be4e8399349af1ce5a5e6d6a91a22ac971b7ae800", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 1, + "row": 2526 + }, + { + "path": "retprotID.m", + "sha256": "2af05d76944235db0dd28f649185b44ef58e335c83c524399ca0873d333841d0", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 1, + "row": 2558 + }, + { + "path": "revstring.pl", + "sha256": "cee33ff520531954da1c55529db3cb77be5ce7e00500c862dad5eb0a62019fe0", + "language": "Perl", + "lines": 36, + "truncated": false, + "block": 1, + "row": 4472 + }, + { + "path": "rf.pl", + "sha256": "79d63a13657c95c797efed1af5d7976fc557d33d604fcb40d6da52bbe83d12cd", + "language": "Perl", + "lines": 107, + "truncated": false, + "block": 1, + "row": 4803 + }, + { + "path": "rfas.pl", + "sha256": "3d559b1c3e12b85d1061cc19366e6e6bc0846aa515792c5f749f9ff4de325556", + "language": "Perl", + "lines": 67, + "truncated": false, + "block": 1, + "row": 4752 + }, + { + "path": "ricecontest.pl", + "sha256": "23ab90615646adc6b9dd82a5445c7993390799382e131c495e1ac4ade6b54d12", + "language": "Perl", + "lines": 25, + "truncated": false, + "block": 1, + "row": 4563 + }, + { + "path": "rightbuilder.pl", + "sha256": "ab0613613e6650b2f0bad4be1ff9c0b1c3000baa575d093fbb6ae5612788b367", + "language": "Perl", + "lines": 194, + "truncated": false, + "block": 1, + "row": 4896 + }, + { + "path": "rnd.pl", + "sha256": "bd52e271240a6c536bbf6fc51c781eeea947b2cffd5d79b12b112e4614d93711", + "language": "Perl", + "lines": 53, + "truncated": false, + "block": 1, + "row": 4698 + }, + { + "path": "rsync.sh", + "sha256": "2db796938a28b62668702419d4d0ea14ced4019259b39b556fc317e94498c3a5", + "language": "Shell", + "lines": 8, + "truncated": false, + "block": 1, + "row": 11394 + }, + { + "path": "rulnrp.pl", + "sha256": "5d3c65f6485b56d539af83857c3b2d3f206fb51740a3eb7ada3da75fbd6fa52f", + "language": "Perl", + "lines": 279, + "truncated": false, + "block": 1, + "row": 4942 + }, + { + "path": "run-length-histogram.pl", + "sha256": "184ee625bfc45c414213649d5ee9b254478ed9efe7066c175f9dad7763e85972", + "language": "Perl", + "lines": 39, + "truncated": false, + "block": 1, + "row": 4539 + }, + { + "path": "run-length-n50.pl", + "sha256": "d33783e59e57bf13d0c28c79ea5b124eba7e16874cbc9005dd15b3d8e294e198", + "language": "Perl", + "lines": 52, + "truncated": false, + "block": 1, + "row": 4592 + }, + { + "path": "run.pl", + "sha256": "1bbe66de88f825aafd4d99417d776d41ed93a80cf62c073c3a66b33d36d5d349", + "language": "Perl", + "lines": 59, + "truncated": false, + "block": 1, + "row": 4778 + }, + { + "path": "run.sh", + "sha256": "7460a1842c7731aa3dc2a17838874fd5235448fe99ec70954ebf7d48c47c75eb", + "language": "Shell", + "lines": 10, + "truncated": false, + "block": 1, + "row": 11141 + }, + { + "path": "runFPTTP.sh", + "sha256": "5fda397c6819e5d9960a8ed59ce58ed64755477a2824841cfd9c70add383395c", + "language": "Shell", + "lines": 278, + "truncated": false, + "block": 1, + "row": 11748 + }, + { + "path": "runJemboss.sh", + "sha256": "e0526068cf4b4c93b38468d5377b6638751a6bb52d4cfeb08f78d405a904912c", + "language": "Shell", + "lines": 38, + "truncated": false, + "block": 1, + "row": 11614 + }, + { + "path": "runMultiTest.pl", + "sha256": "b502222d04d9d079f573932326d09389e33b430dbacccd83e3145c307f22e3ef", + "language": "Perl", + "lines": 69, + "truncated": false, + "block": 1, + "row": 4798 + }, + { + "path": "run_all.pl", + "sha256": "4855a630524bf6493a6ee2e9eabb600fbdc0ee25591f197cfa7584d0392b241f", + "language": "Perl", + "lines": 26, + "truncated": false, + "block": 1, + "row": 4484 + }, + { + "path": "run_assemblepreprocessed.sh", + "sha256": "ddc93a6c8b8e12d9eda3b7cd27a6a30f74fdf3d21808c1c59d0e7f9ffc4140cd", + "language": "Shell", + "lines": 35, + "truncated": false, + "block": 1, + "row": 11632 + }, + { + "path": "run_fuzzyrule_gen.pl", + "sha256": "5b41165d813d1541c5c8afd445db0bc81676db6ad1607bb802485e1029ef39c9", + "language": "Perl", + "lines": 31, + "truncated": false, + "block": 1, + "row": 4569 + }, + { + "path": "run_hum2chimp.sh", + "sha256": "b1117f5d54c23ec82e507810c41b725ec37e4288faa3e4159cd2879556c0c511", + "language": "Shell", + "lines": 8, + "truncated": false, + "block": 1, + "row": 11161 + }, + { + "path": "run_limma.R", + "sha256": "eaf79b5829afb436b3129218636bdf50b632e594706d6060a8fe9a67deaec114", + "language": "R", + "lines": 100, + "truncated": false, + "block": 1, + "row": 10294 + }, + { + "path": "run_scr.pl", + "sha256": "b575611c5f722a7a26d0f096e83a00b487399eb0aaf78e227dda45bafe9ba06e", + "language": "Perl", + "lines": 113, + "truncated": false, + "block": 1, + "row": 4862 + }, + { + "path": "run_tTest.R", + "sha256": "49da6bb227383653fe9ae0caa3169623454ff16a3cebf39c33e1dc035719811f", + "language": "R", + "lines": 52, + "truncated": false, + "block": 1, + "row": 10124 + }, + { + "path": "runas.pl", + "sha256": "9fbfcdb2972b6954e62ff27f235e71b928421814c32cae4a9b8c8879b6fec09a", + "language": "Perl", + "lines": 7, + "truncated": false, + "block": 1, + "row": 4455 + }, + { + "path": "runatac.pl", + "sha256": "9b236148bb28af82685f820959cd9940d36e8cfc85baf309b2fb2c938460502a", + "language": "Perl", + "lines": 16, + "truncated": false, + "block": 1, + "row": 4401 + }, + { + "path": "runcodbaclm.pl", + "sha256": "c37b59c3cca33712c10746d946ba8f7ed3fb9161f797dfc8dd9fea111775c6e9", + "language": "Perl", + "lines": 25, + "truncated": false, + "block": 1, + "row": 4488 + }, + { + "path": "runeast.pl", + "sha256": "da5edf54cfe13783c6b1fa186ae1b2e9cd9b8bf4c261ef0b50bbeb1fcf663826", + "language": "Perl", + "lines": 55, + "truncated": false, + "block": 1, + "row": 4775 + }, + { + "path": "runjobs.pl", + "sha256": "0d0b1bea3ffe9e79f514b920e6066296528bc4c6788a645c7c4e37778c8462e0", + "language": "Perl", + "lines": 20, + "truncated": false, + "block": 1, + "row": 4408 + }, + { + "path": "runmap.pl", + "sha256": "064d2e2a897b6324c93c8c37dc7458fa3cf56a775c0088b34f6ab8592c99d360", + "language": "Perl", + "lines": 7, + "truncated": false, + "block": 1, + "row": 4471 + }, + { + "path": "runme.sh", + "sha256": "b68e6757791e512be47fbaa6b711c4461ad3ed5a94122e213bcc9d5bf5229982", + "language": "Shell", + "lines": 21, + "truncated": false, + "block": 1, + "row": 11491 + }, + { + "path": "runmod.pl", + "sha256": "1a508fe29af5f2f4af1c9f3470d4a81f0cb1e2fd66441e79c152e0c67d3cbb3e", + "language": "Perl", + "lines": 24, + "truncated": false, + "block": 1, + "row": 4450 + }, + { + "path": "runnewbler.pl", + "sha256": "3d48e11258418d76ca17332ec41c41deb27466aa66ec98fc49e1b76254b1d9ec", + "language": "Perl", + "lines": 57, + "truncated": false, + "block": 1, + "row": 4774 + }, + { + "path": "runnewonrndread_flc.pl", + "sha256": "b48720ec08e11bce3a93be185fd1ae0a008f5dc01396adeac7a9e96bd06dc99a", + "language": "Perl", + "lines": 65, + "truncated": false, + "block": 1, + "row": 4849 + }, + { + "path": "runnv.pl", + "sha256": "2778ac8d72ef8e7d8520f2edb8570bb7765d20d9137544df2f771ad093a5d8a0", + "language": "Perl", + "lines": 55, + "truncated": false, + "block": 1, + "row": 4773 + }, + { + "path": "runord_nn.pl", + "sha256": "dcce4f91a908bf21964ffaa9d702b11c7aa3a669897225ba3933daab0aa266b6", + "language": "Perl", + "lines": 11, + "truncated": false, + "block": 1, + "row": 4465 + }, + { + "path": "runordlr.pl", + "sha256": "3a2cda3f4e98c258026905ba236ed8d76589f5e94babbb3790fcfcc56dbee98d", + "language": "Perl", + "lines": 20, + "truncated": false, + "block": 1, + "row": 4601 + }, + { + "path": "runordsc.pl", + "sha256": "1b69327781703c25b447c3b13b9c85aa130a248e0b95ac645b865a18c5d1446b", + "language": "Perl", + "lines": 10, + "truncated": false, + "block": 1, + "row": 4505 + }, + { + "path": "runordscsvm.pl", + "sha256": "53e8a03231e3243510c24f3c96e911f7f95f99b607b25492e2831beccede7a5f", + "language": "Perl", + "lines": 10, + "truncated": false, + "block": 1, + "row": 4400 + }, + { + "path": "runproj.pl", + "sha256": "1ab177e2544cd6ae73a6d7842a0f3e780b9185d8d055fa173aef8891eec45368", + "language": "Perl", + "lines": 25, + "truncated": false, + "block": 1, + "row": 4462 + }, + { + "path": "rustSeqMap.rmd", + "sha256": "acd17a3373b5cad6891b0540abb8938000c50297ed55fbf230eaa3b04a7e63d9", + "language": "R", + "lines": 85, + "truncated": false, + "block": 1, + "row": 10112 + }, + { + "path": "s2g.pl", + "sha256": "acb397578760fe2ac5bd5c94a196c693f89c22ed4e8fedac32b2b810c2638072", + "language": "Perl", + "lines": 84, + "truncated": false, + "block": 1, + "row": 4783 + }, + { + "path": "saga.sh", + "sha256": "60dd21e1d31e774e193b1ebff3c2a7a0571c47e8a05c7bad9ce4cb9835f27d50", + "language": "Shell", + "lines": 2, + "truncated": false, + "block": 1, + "row": 11115 + }, + { + "path": "sageDE.py", + "sha256": "82e9e1539dec3092695e6613814b3da092b9ca121398ccd566c7719a3f65ae37", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 1, + "row": 5875 + }, + { + "path": "sageDE.r", + "sha256": "685af3003f26ed204e053b905118054dbaa3a749ec3afc51199f55cacd9607cf", + "language": "R", + "lines": 12, + "truncated": false, + "block": 1, + "row": 9930 + }, + { + "path": "scafpair.pl", + "sha256": "7bb9cd345593aeb579ba7a95f0bc8ef57e1cec646937e4e0f4a33daaf709c1da", + "language": "Perl", + "lines": 23, + "truncated": false, + "block": 1, + "row": 4463 + }, + { + "path": "scaleColMedianRowHeatmap.rmd", + "sha256": "97d17073e4a2ccd77bc8fe0f253b8ff3be39775a309014038701b3c9f9462529", + "language": "R", + "lines": 162, + "truncated": false, + "block": 1, + "row": 10292 + }, + { + "path": "scan.pl", + "sha256": "0c12521a87fd1177743764a7d4b4cb704cf303c662751f4048cdadbd5b8911c3", + "language": "Perl", + "lines": 63, + "truncated": false, + "block": 1, + "row": 4609 + }, + { + "path": "scatterPlot.js", + "sha256": "c939a7960742f489b369842f8934e8d14279bc44fde149efb8b0b6bef6ab3c69", + "language": "JavaScript", + "lines": 14, + "truncated": false, + "block": 1, + "row": 654 + }, + { + "path": "scimath.py", + "sha256": "5b344313ef5548e64403fc4178838ed8ef24cc38c1cf03cf30388a6753136cd6", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 1, + "row": 6266 + }, + { + "path": "scorecomp.pl", + "sha256": "55e04555dfebe8c96cdc196a8ff0bbb2fff9f18c3c65e95c141e53d9138d8bac", + "language": "Perl", + "lines": 56, + "truncated": false, + "block": 1, + "row": 4649 + }, + { + "path": "scratch.c", + "sha256": "40271cc4be3d31ebcad4b3c01ab3b6d2ded5daed5f5c670f3bdb35c2471a1cc0", + "language": "C", + "lines": 19, + "truncated": false, + "block": 1, + "row": 1 + }, + { + "path": "scratch.cpp", + "sha256": "0aff89113cccf35acd8b9063ab7bda591c934a2eee0a8bc49ac14f6ded838213", + "language": "C++", + "lines": 11, + "truncated": false, + "block": 1, + "row": 207 + }, + { + "path": "scratch.go", + "sha256": "2c2ec71b19e590a5d6bc9a2a34a57d86d57dc85f2a4bffc4570518aedafcf764", + "language": "Go", + "lines": 62, + "truncated": false, + "block": 1, + "row": 467 + }, + { + "path": "scratch.jl", + "sha256": "24a5933bbe442b286cf91c063267b5f6fcb00c933c19c8cc534d913757ae9e97", + "language": "Julia", + "lines": 447, + "truncated": false, + "block": 1, + "row": 1632 + }, + { + "path": "scratch.js", + "sha256": "15b00b6f8a7e50f2e83e3b5eacccbad8746d8378f80699977388616c5c5fd8a0", + "language": "JavaScript", + "lines": 66, + "truncated": false, + "block": 1, + "row": 1047 + }, + { + "path": "scratch.m", + "sha256": "cb29f67d089eb96ddc0a87de182febabe303156c4972d018543826338e6af783", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 1, + "row": 2933 + }, + { + "path": "scratch.nb", + "sha256": "fc1ea32e22b8e6984aa20b74c0ee9bc3d783384e39dda82c5f2c76885833fcae", + "language": "Mathematica", + "lines": 137, + "truncated": false, + "block": 1, + "row": 4367 + }, + { + "path": "scratch.pl", + "sha256": "05db5476a07058a6411b12deefb2eb2eacf9ad2bc2cac64f969bc6465df8baa1", + "language": "Perl", + "lines": 781, + "truncated": false, + "block": 1, + "row": 4953 + }, + { + "path": "scratch.py", + "sha256": "9c5845ed6fa765041e785752c5740b802e53ac89a783d561a0a801481899f008", + "language": "Python", + "lines": 5175, + "truncated": true, + "block": 1, + "row": 9886 + }, + { + "path": "scratch.qmd", + "sha256": "0a7b44df3af8c73701492f7f1d6d60a4aba3faee500db8250cf8a953f0f55683", + "language": "Quarto", + "lines": 31, + "truncated": false, + "block": 1, + "row": 9887 + }, + { + "path": "scratch.rmd", + "sha256": "53f99c3e5824484523f210b49500b1922df4f28066774a063640f04e6cccbf7d", + "language": "R", + "lines": 4750, + "truncated": true, + "block": 1, + "row": 10622 + }, + { + "path": "scratch.scala", + "sha256": "7180dcae56b467aefb8421ba372e1db81718f4bac9d9a0b64c849cc2c2fe4d58", + "language": "Scala", + "lines": 10, + "truncated": false, + "block": 1, + "row": 11105 + }, + { + "path": "scratch.sh", + "sha256": "a76a44b8f85560dd0efd55981821d0662489bf678a7929a5c5fba3caba1b86ca", + "language": "Shell", + "lines": 40, + "truncated": false, + "block": 1, + "row": 11724 + }, + { + "path": "scratchPerseus.py", + "sha256": "c7e46187d0663cb327a483dc906515abd1692cf8d1671aa6906826318711021d", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 1, + "row": 5477 + }, + { + "path": "scratchPerseus.r", + "sha256": "c8ca9ab815bd99e1756d6cc3d40b145e3ed7000ae8d2ac8dc62244d3e4c283c9", + "language": "R", + "lines": 33, + "truncated": false, + "block": 1, + "row": 10047 + }, + { + "path": "selcomp_rand.pl", + "sha256": "a2878082c24aa8e9c084dddd5673867db1b2fa7e2ebff185a2b8bf0a1cf78949", + "language": "Perl", + "lines": 64, + "truncated": false, + "block": 1, + "row": 4928 + }, + { + "path": "selectIDfromXlsx.r", + "sha256": "ad3a367901e752f17270cc9d30cd85d68d8ae25724bf92f1877c8b1c9dee8e0b", + "language": "R", + "lines": 49, + "truncated": false, + "block": 1, + "row": 10059 + }, + { + "path": "select_assemble.pl", + "sha256": "e8f137e0a04bffd0c302bda3c58f66102cf2399433d4b2ecb374f86f43c404e5", + "language": "Perl", + "lines": 21, + "truncated": false, + "block": 1, + "row": 4622 + }, + { + "path": "select_map_low.pl", + "sha256": "ab9c2d8d9a04c76553dc54ccb1a1d3fa5e281faba60d4dce8e61d9f5e505184d", + "language": "Perl", + "lines": 21, + "truncated": false, + "block": 1, + "row": 4623 + }, + { + "path": "sepclass.pl", + "sha256": "59dfa2a17a196629196bf06f095ef0d822587c2f2221c3211b6ccd6e6fa76a8c", + "language": "Perl", + "lines": 16, + "truncated": false, + "block": 1, + "row": 4495 + }, + { + "path": "sepconrunbac.pl", + "sha256": "da16a1364708ed6d873f0b00f7e9be80cb7c3e0ad108a3dfca711811b2415ebc", + "language": "Perl", + "lines": 39, + "truncated": false, + "block": 1, + "row": 4593 + }, + { + "path": "sepsolpair.pl", + "sha256": "1817e38f760e49f0c195fc51ae9d25e19d02d194b0c9bd560f56de5d5f34a524", + "language": "Perl", + "lines": 50, + "truncated": false, + "block": 1, + "row": 4626 + }, + { + "path": "seqDIANN.sh", + "sha256": "d250b4c1148fed12b7a1fb35b96fb705a334d9cfe996338f21bfc499a4e11759", + "language": "Shell", + "lines": 71, + "truncated": false, + "block": 1, + "row": 11691 + }, + { + "path": "seqIO.pl", + "sha256": "100f7a6f5fbb81b1a579c2ee1658e8772d5383a8c0833c7ef518a4852bbd7ba2", + "language": "Perl", + "lines": 9, + "truncated": false, + "block": 1, + "row": 4404 + }, + { + "path": "seqRNASetup.sh", + "sha256": "07e3725f2a26acb21e555a6debd535b3125ee2a150e7952645b5ebb23caf78a6", + "language": "Shell", + "lines": 81, + "truncated": false, + "block": 1, + "row": 11730 + }, + { + "path": "seqcom.pl", + "sha256": "3c227d9ba77988ab503d1d7dbbb9e326589f22cc6eed8301ed6a37d649f2dcb2", + "language": "Perl", + "lines": 112, + "truncated": false, + "block": 1, + "row": 4842 + }, + { + "path": "seqexport_parser.pl", + "sha256": "8f6e8e5e3ff856d6d7b01948980f17f3baecfe6acf7f2a06769160bceb5cc808", + "language": "Perl", + "lines": 40, + "truncated": false, + "block": 1, + "row": 4550 + }, + { + "path": "seqgbk.pl", + "sha256": "790d89404d9485d31f83ad686e7c7e9a0803abd0a37552085c967f2d74c801cd", + "language": "Perl", + "lines": 60, + "truncated": false, + "block": 1, + "row": 4745 + }, + { + "path": "seqgenDNAbacktrans.pl", + "sha256": "574fb60cc348b79b2d6fa77854fccf3142acb2e31d6f24124f6cf5e1e2b27acf", + "language": "Perl", + "lines": 252, + "truncated": false, + "block": 1, + "row": 4927 + }, + { + "path": "seqlength.pl", + "sha256": "04d0819a0b975b17efb3b1d1024ffe71db44694f2c2041e49a63d9218006c3d8", + "language": "Perl", + "lines": 34, + "truncated": false, + "block": 1, + "row": 4596 + }, + { + "path": "seqmerge.pl", + "sha256": "6096afcaf07cf9cb3764cbb684d3c0c4678f881a850940ee3554caf4d83f4384", + "language": "Perl", + "lines": 104, + "truncated": false, + "block": 1, + "row": 4813 + }, + { + "path": "seqnosptotab.pl", + "sha256": "9c80199f38bef74f2bee561b3263cafea5775c688435357b117274faaf62e53a", + "language": "Perl", + "lines": 67, + "truncated": false, + "block": 1, + "row": 4695 + }, + { + "path": "seqpic.pl", + "sha256": "371cfdfb406d15e2614a04ed16471416831b2cdadfb173cad8a5710a21fc38d1", + "language": "Perl", + "lines": 88, + "truncated": false, + "block": 1, + "row": 4857 + }, + { + "path": "seqprop.pl", + "sha256": "5ceed23e426132513172c1d8151030e8e9026e7f52499d6eb741a1f5bfa18412", + "language": "Perl", + "lines": 53, + "truncated": false, + "block": 1, + "row": 4701 + }, + { + "path": "seqstsp.pl", + "sha256": "89a4858dd16c86686365f7a77e1629c1c1c899b43155bdcd18178f6ef747fc36", + "language": "Perl", + "lines": 47, + "truncated": false, + "block": 1, + "row": 4668 + }, + { + "path": "sequenceVenn_fasta.py", + "sha256": "56a8f26f7aaa48009fe84c43ddfb57c957aac6a2d3919ea4144fa5129ad142d0", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 1, + "row": 7028 + }, + { + "path": "sff2clc.pl", + "sha256": "10a23e0af9a54d10ed74fc5815c6e47d9da7f228eb64cdf0513a8537dd87e36b", + "language": "Perl", + "lines": 20, + "truncated": false, + "block": 1, + "row": 4489 + }, + { + "path": "shannonEntropy.pl", + "sha256": "6ace860f675be71b79c8b3f2a67b3677bcc9d6abefa5ae9c6028dbb958fe16b4", + "language": "Perl", + "lines": 50, + "truncated": false, + "block": 1, + "row": 4680 + }, + { + "path": "shareLink.py", + "sha256": "8fe5d352bddf0b336119c0957cd0736fbc95d0b2c4e9f12b185bd70be6931832", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5554 + }, + { + "path": "shuffle.c", + "sha256": "34c8edce4043866213b49009ef040a8ee035ab98d26e95ee59c40a4c2f8c62d2", + "language": "C", + "lines": 148, + "truncated": false, + "block": 1, + "row": 41 + }, + { + "path": "shuffleSequences_fasta.pl", + "sha256": "e15754d36d39585c2caa79982241e88b20a5d778cc6a94e9d629214b8e86691e", + "language": "Perl", + "lines": 41, + "truncated": false, + "block": 1, + "row": 4606 + }, + { + "path": "silac.m", + "sha256": "3b6ed24b2d579f922166c78d4ea714720e2eb75e86923b834709fdd658fe8b70", + "language": "MATLAB", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2683 + }, + { + "path": "simspecies.m", + "sha256": "a075a9cc9d535eeb11f00141e9249053000633f389628b67974d476206c2e0e8", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 1, + "row": 2564 + }, + { + "path": "simtop.m", + "sha256": "7dd5548b162fc267a081977d2b021b2d32618fb29c61c5407d3ab6ffd8d6efcf", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 1, + "row": 2771 + }, + { + "path": "simulate.r", + "sha256": "921e78df12322b13ffd1b1852926f57ac9fd08c4a5f86c84f81f56d152774ce8", + "language": "R", + "lines": 78, + "truncated": false, + "block": 1, + "row": 10094 + }, + { + "path": "slurmDIANN.sh", + "sha256": "28d128431e5636a4a0012bee7ac7c2a4763127fae95f44e4a9941fa3560d6dd2", + "language": "Shell", + "lines": 12, + "truncated": false, + "block": 1, + "row": 11180 + }, + { + "path": "slurmFP.sh", + "sha256": "a7a0f7104c6c31e33a2652456d951bf55a2dc0cfa098bc6f29f7ece7d065fe96", + "language": "Shell", + "lines": 44, + "truncated": false, + "block": 1, + "row": 11651 + }, + { + "path": "slurmFastQC.sh", + "sha256": "e157629bece3cd623af2117797b67ce6391730f19aee57c4274a8a3724976bc4", + "language": "Shell", + "lines": 21, + "truncated": false, + "block": 1, + "row": 11487 + }, + { + "path": "slurmHISAT2.sh", + "sha256": "c97d39160685e97e8197492936aa8efc7e832ac823a49bdbe3f4e34193263820", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11635 + }, + { + "path": "slurmMQrun.sh", + "sha256": "d769ec4db0d517ae8603d6083d9e90cb4359e9457ad1659bf90e0190dd2925b2", + "language": "Shell", + "lines": 80, + "truncated": false, + "block": 1, + "row": 11731 + }, + { + "path": "slurmMQrunTTP.sh", + "sha256": "fedda642c367c3b414bb321293c0558b9cdfa39b5ab71a8b0789895422d9b381", + "language": "Shell", + "lines": 57, + "truncated": false, + "block": 1, + "row": 11702 + }, + { + "path": "slurmMinMap2.sh", + "sha256": "3b765981ad15852d516a217470b8a8867414e3254ac37a7afb7e580195541fce", + "language": "Shell", + "lines": 31, + "truncated": false, + "block": 1, + "row": 11690 + }, + { + "path": "slurmQI.sh", + "sha256": "978304a8ded4c9037f5bca42366944e4190f45060f864285a53f5b41700c3d92", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11542 + }, + { + "path": "slurmSR.sh", + "sha256": "17ac75a1a9b10f3226549c4abb62739cad6964c07f0ac3fd60bde368584ad269", + "language": "Shell", + "lines": 99, + "truncated": false, + "block": 1, + "row": 11750 + }, + { + "path": "slurmST.sh", + "sha256": "20bf688f1f3b5c1800cce21932f2428402f764333c8c58e259b8392d4cc09910", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11637 + }, + { + "path": "slurmSTAR.sh", + "sha256": "99a97ddcd981a60e99365d43f1d73d39c83406139522d6c3ec9fefc36dc44f2d", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11620 + }, + { + "path": "slurmSage.sh", + "sha256": "51dba9f98462023580704ced5d18d815a4f29c74b35a6338be32e9c4d490e419", + "language": "Shell", + "lines": 49, + "truncated": false, + "block": 1, + "row": 11719 + }, + { + "path": "slurmTM.sh", + "sha256": "c123f3f125ac2922466aca1477b26077a00a52cceb36ef0ce9b0d285e6a462d7", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11618 + }, + { + "path": "smm.pl", + "sha256": "d806e3817cfb41ced958555119fd9ff0444957c94cb9276722de76a764f58ff6", + "language": "Perl", + "lines": 135, + "truncated": false, + "block": 1, + "row": 4876 + }, + { + "path": "smp_generator.py", + "sha256": "f9af4c263fea1c8f04e0cb11514b8d33aeb93493bc1b3acce3484e170f012cfd", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 1, + "row": 5558 + }, + { + "path": "sn5_m_sm.pl", + "sha256": "ce7dc9c087a6c6144f09b6d3286a18e21dd5a49c461079ed15d123443b093c9d", + "language": "Perl", + "lines": 52, + "truncated": false, + "block": 1, + "row": 4742 + }, + { + "path": "sn_cho.pl", + "sha256": "b9c60b776702f0f552ce7b7a82e96c94d66bf3ea66e1fb36d9c0d64d568a43b4", + "language": "Perl", + "lines": 62, + "truncated": false, + "block": 1, + "row": 4743 + }, + { + "path": "soap.pl", + "sha256": "2f4408ecbb9deb0adc228e15e7a8ae5ee10f966af034a5041252d10c78bf87fc", + "language": "Perl", + "lines": 7, + "truncated": false, + "block": 1, + "row": 4384 + }, + { + "path": "sol2asm-plot-all.r", + "sha256": "7b021e59c6990ea5c7f21f04611f5ec8491f9663cda759de5e5c86ba0b0ead20", + "language": "R", + "lines": 20, + "truncated": false, + "block": 1, + "row": 9962 + }, + { + "path": "sol2pair454.pl", + "sha256": "fcc096f4cff32eaedd886acd92893809ede21ecc5852451f11f569183d2364dd", + "language": "Perl", + "lines": 17, + "truncated": false, + "block": 1, + "row": 4449 + }, + { + "path": "some_scales.pl", + "sha256": "9050c7bfedc8fd227dd153df153910587050e79229f19281d775eae92c34a3b2", + "language": "Perl", + "lines": 28, + "truncated": false, + "block": 1, + "row": 4608 + }, + { + "path": "sound_corr.m", + "sha256": "f8ab2c43d3413cd093e07d2a39e3009dc22e43944c1a972f422b2c1864f791f8", + "language": "MATLAB", + "lines": 162, + "truncated": false, + "block": 1, + "row": 3530 + }, + { + "path": "sound_sm.m", + "sha256": "68518033111d60f658f70d18491d7022989c5e5fdeabc816fc90b1c6053e5d0c", + "language": "MATLAB", + "lines": 628, + "truncated": false, + "block": 1, + "row": 4195 + }, + { + "path": "spark-mz-distrib.py", + "sha256": "b56678124e8f84ce4806ec66abcfb81b55d17cb0e094c5b7ab6496f43738574a", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 1, + "row": 5562 + }, + { + "path": "spdbv2.pl", + "sha256": "5155456d9c010f71e9c830089b2fc64698b4fcb52656a158400525eb4bd23f63", + "language": "Perl", + "lines": 47, + "truncated": false, + "block": 1, + "row": 4676 + }, + { + "path": "spidez.pl", + "sha256": "5983b7664bf1d8db6d764b31e6ce79be639ec57e545854ab6f15c603426e96fd", + "language": "Perl", + "lines": 44, + "truncated": false, + "block": 1, + "row": 4639 + }, + { + "path": "split_fasta.pl", + "sha256": "365b38b10d81ab304f48dc969cbde4f7c43f8473dafdfd15da0ef22a4e3f06f7", + "language": "Perl", + "lines": 10, + "truncated": false, + "block": 1, + "row": 4407 + }, + { + "path": "split_test_file.pl", + "sha256": "804d745e62bdfb8e5bb759778b4d4ddd6fbab7b2828e52728a563af800160642", + "language": "Perl", + "lines": 27, + "truncated": false, + "block": 1, + "row": 4464 + }, + { + "path": "splitseq.pl", + "sha256": "b04927489a5783d656bdb68dad66e00fd71cf375074bd8b1ae2948aafa66ff94", + "language": "Perl", + "lines": 66, + "truncated": false, + "block": 1, + "row": 4722 + }, + { + "path": "srm.r", + "sha256": "751f31417d6d524311056c33bf3d32b6d1449db0fb3fda1ced77a6bb93d86580", + "language": "R", + "lines": 25, + "truncated": false, + "block": 1, + "row": 9980 + }, + { + "path": "ssaacomp.m", + "sha256": "7f31acacb596bea8d0865fdcfd67a073ce005097aa13daa66accc559fd64b45a", + "language": "MATLAB", + "lines": 139, + "truncated": false, + "block": 1, + "row": 3534 + }, + { + "path": "std_mean.pl", + "sha256": "b675290146cb7303572fa8abb49984d5b193ea5aff8b5f6c6d050d046a0d46c5", + "language": "Perl", + "lines": 54, + "truncated": false, + "block": 1, + "row": 4726 + }, + { + "path": "stdp_prot.m", + "sha256": "9dd1b0de758a8b6e350504a2d6e91667ca3aebc5f0cfb6f9816c167684a4d15f", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 1, + "row": 2590 + }, + { + "path": "stratatest.r", + "sha256": "b0011d3a7eef6ea6969f295d7f201bc439ac2a6ae1d8eae4584367e366c7c82f", + "language": "R", + "lines": 43, + "truncated": false, + "block": 1, + "row": 10052 + }, + { + "path": "streamData.py", + "sha256": "cde67ff2c43093e8a2d5a10928caf6b45acb87905ab2bb6c8de7bb6ab182f7bd", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 1, + "row": 6379 + }, + { + "path": "streamPlotData.py", + "sha256": "17c4f6924958a8cb942fc12bd0f75aa43c7010e23e53b52cefa2744872447ce6", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 1, + "row": 6612 + }, + { + "path": "streamVennData.py", + "sha256": "cc1b791051e5e6438fe9c7c28079aaeb93ff206a89b92ef516c57182c481ad65", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 1, + "row": 6392 + }, + { + "path": "stretcher.pl", + "sha256": "8614e2323ea4bc67fea4bcc0a2d3290a83bbc67ad17d56cbdc046c3942509dd8", + "language": "Perl", + "lines": 80, + "truncated": false, + "block": 1, + "row": 4734 + }, + { + "path": "structure-io.pl", + "sha256": "f7464d601689bc9631feb6f787ad6dec52aad70d865c710ad656910a45c68405", + "language": "Perl", + "lines": 21, + "truncated": false, + "block": 1, + "row": 4476 + }, + { + "path": "subCellularLocationMap.r", + "sha256": "4437d51f5262921db8625d8c77db69d04d9b56a10b7d08e0cc85075b9ac4db53", + "language": "R", + "lines": 364, + "truncated": false, + "block": 1, + "row": 10531 + }, + { + "path": "subLineInFiles.pl", + "sha256": "dfbe7c39608f67bf0280a5fff0bdfc564756c047b031e63f0a29a01110c2cec6", + "language": "Perl", + "lines": 64, + "truncated": false, + "block": 1, + "row": 4725 + }, + { + "path": "subPRIDE.sh", + "sha256": "e9806d1a99887e62a43df15e698efe818440253b89116a1d151eca19f7476571", + "language": "Shell", + "lines": 19, + "truncated": false, + "block": 1, + "row": 11634 + }, + { + "path": "subseq.pl", + "sha256": "002c5d38ab90a53dfc70c028b8e83c63616d7b5b81d991a225f0638f1ab4ad6e", + "language": "Perl", + "lines": 71, + "truncated": false, + "block": 1, + "row": 4694 + }, + { + "path": "supersilac.m", + "sha256": "e4708bed0adf0d6f4283d9751431bf07f5e318d517432c9eb4669cbfdabf59de", + "language": "MATLAB", + "lines": 281, + "truncated": false, + "block": 1, + "row": 3942 + }, + { + "path": "survFit.r", + "sha256": "6500407287209951eb1eb6100e22d6065b5f12936ae02066fb2dc572dd3754bb", + "language": "R", + "lines": 131, + "truncated": false, + "block": 1, + "row": 10222 + }, + { + "path": "survivalAnalysis.rmd", + "sha256": "b3a518e571b3ed95e174ca5176a54ba60779e22cfb7bc8581f1dc1344ce7fa04", + "language": "R", + "lines": 1735, + "truncated": false, + "block": 1, + "row": 10611 + }, + { + "path": "svm_demo.m", + "sha256": "e2b8790b806568ad462c16db19f1480dccaa3f879e5ed34776eb9ca6967dd896", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 1, + "row": 2755 + }, + { + "path": "symParams.py", + "sha256": "b710d000bfae50d5a21a00f9938e669bc154db995db7c7717e73eb61d04ca6db", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 1, + "row": 6241 + }, + { + "path": "syn.r", + "sha256": "03a1b18a9d1e517995e9cc9cdea76128bd561686590a95c4af90f5076e4a7a33", + "language": "R", + "lines": 28, + "truncated": false, + "block": 1, + "row": 9973 + }, + { + "path": "synergy.rmd", + "sha256": "f93337f3f06bec34b7bd76524350de08cee3f7adf8e5bf180d74ea5deb1a5f7a", + "language": "R", + "lines": 110, + "truncated": false, + "block": 1, + "row": 10189 + }, + { + "path": "tRNAmap.r", + "sha256": "a3d82af4b19b38d5b5b1c25b218425f8a5b510447500bb6022dd3b5a18421892", + "language": "R", + "lines": 17, + "truncated": false, + "block": 1, + "row": 9947 + }, + { + "path": "tab.pl", + "sha256": "8c9f57f04370881d09f4bec9ef661d066bb1a3eeae09c5ff03263b574d8fbd34", + "language": "Perl", + "lines": 33, + "truncated": false, + "block": 1, + "row": 4467 + }, + { + "path": "tab2csv.pl", + "sha256": "45b2dab3e21211f8086b2f77d4184824cda2807539c3901f9c83a12249961fff", + "language": "Perl", + "lines": 26, + "truncated": false, + "block": 1, + "row": 4456 + }, + { + "path": "tarX.sh", + "sha256": "0b0e519a3dff3454d888d59a3f190fe0ebc23d17d6ebdda85762cd3ea26af3f9", + "language": "Shell", + "lines": 4, + "truncated": false, + "block": 1, + "row": 11218 + }, + { + "path": "taxonomy.pl", + "sha256": "7fc7389c7c929e581a8df6b5456efbcbd00539cf644637177c4e49d841e7afb5", + "language": "Perl", + "lines": 30, + "truncated": false, + "block": 1, + "row": 4526 + }, + { + "path": "tespygame.py", + "sha256": "9dbc47c4c6ee3afe2f3146c6b5d94bb2425ffb1ad7580b691ba07d1a5e6f7786", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 1, + "row": 6264 + }, + { + "path": "testGPU.py", + "sha256": "f5eb5a461a8500b5148ce50eb8d40877fa9e13779849427fa2873334153f9bfb", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5320 + }, + { + "path": "testIQ.r", + "sha256": "5cfb6cc8c4e0b6744ff577e09a24b0c5aef9e59d65315109b2b459b4f3461035", + "language": "R", + "lines": 310, + "truncated": false, + "block": 1, + "row": 10326 + }, + { + "path": "testMarimo.py", + "sha256": "98bd3c066f894e90daea92a93d4819776263c1893cdd2eee6de5a19808a2ee8a", + "language": "Python", + "lines": 192, + "truncated": false, + "block": 1, + "row": 7419 + }, + { + "path": "testRapids.py", + "sha256": "a4009e385fdae63124c8515947dbc0502db38c411c6ac2bb6e82ed2c3f632eaf", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 1, + "row": 5196 + }, + { + "path": "testVSN.r", + "sha256": "79d177953bedfc149450c2990655cbb73f96e1fc51b858bb820c2832a9125249", + "language": "R", + "lines": 248, + "truncated": false, + "block": 1, + "row": 10198 + }, + { + "path": "testVersion.py", + "sha256": "3883359dfc5b7f5bb3af82fb4fb7570be90f55d742aa2707233dca7eeced87d2", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 1, + "row": 5205 + }, + { + "path": "tfPneumo.py", + "sha256": "02e1298e3ded8748a8187e2824d774616a51901e42e3dd1a7be3d19fee47cdcd", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 1, + "row": 5981 + }, + { + "path": "time.java", + "sha256": "5f79bd09292fd22cfdda34d2c62effcffbaddd32fbddbf07d86e00b5041106ef", + "language": "Java", + "lines": 41, + "truncated": false, + "block": 1, + "row": 497 + }, + { + "path": "topsim.py", + "sha256": "6051769dbeae64d64a6041c1f87c7582e1c40e924a582b208d79ffe313ad3d4a", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 1, + "row": 6217 + }, + { + "path": "trainGENTLR4HDACi.py", + "sha256": "82cd9b9494db7773d244799fc3fb16b1e3160f10068057c8702b4fc5c951e278", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 1, + "row": 7074 + }, + { + "path": "transeqUnstar.pl", + "sha256": "eb603295e2f06584b1f153edb31a7ede2693deedcace8b1bd6fa2371c8b4c21b", + "language": "Perl", + "lines": 29, + "truncated": false, + "block": 1, + "row": 4468 + }, + { + "path": "transfecexp.m", + "sha256": "51a8577c883aea991c0933e8e1b47473cf1edd1f5b526400c4f4d4a4e90ce2b9", + "language": "MATLAB", + "lines": 124, + "truncated": false, + "block": 1, + "row": 3482 + }, + { + "path": "translateFasta.pl", + "sha256": "f1cb1ae074f6df2842f0faf61c9262efd6548360144806898a754659e10905d5", + "language": "Perl", + "lines": 94, + "truncated": false, + "block": 1, + "row": 4825 + }, + { + "path": "transpose.pl", + "sha256": "f25f6c6043805bf57dde716f2139bd45d9422ab3449caae320d14128d6db2f0f", + "language": "Perl", + "lines": 25, + "truncated": false, + "block": 1, + "row": 4461 + }, + { + "path": "tree_name_to_ids.pl", + "sha256": "65fcec94fe27947e6094331b321c560ac61f49930642709e002293a0469b66c4", + "language": "Perl", + "lines": 33, + "truncated": false, + "block": 1, + "row": 4600 + }, + { + "path": "treebuilder.pl", + "sha256": "d530feca6b13a10247a7c49d90ea5e875f8ae83895212afe13c0ebb12e0d8e80", + "language": "Perl", + "lines": 203, + "truncated": false, + "block": 1, + "row": 4890 + }, + { + "path": "treform_table.pl", + "sha256": "1d342579c80c4498e5e49c5fb96bfdf49ff647c5cf3d9e8fa57d38a59ca23587", + "language": "Perl", + "lines": 97, + "truncated": false, + "block": 1, + "row": 4804 + }, + { + "path": "trendlysis.m", + "sha256": "4f8ce8fb462d9e47f9a3d4b33f838045b7a9246052db07126e5bdf434a6096e3", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 1, + "row": 2473 + }, + { + "path": "trpNormalize.pl", + "sha256": "9ad3d0d93aa7d2d830c19760fe742cdb96f01e3fc1739155cd5a7daa093f2e5c", + "language": "Perl", + "lines": 41, + "truncated": false, + "block": 1, + "row": 4657 + }, + { + "path": "truncate.pl", + "sha256": "f11a541261f8efb114d87405ad6e079bfb246807f33d652e736c008e1a281515", + "language": "Perl", + "lines": 169, + "truncated": false, + "block": 1, + "row": 4907 + }, + { + "path": "tweetaLyze.nb", + "sha256": "b1de47806166d3f35533bd6bd8846b0a78fddc85f8bd1449745b7e7b7c5bff4a", + "language": "Mathematica", + "lines": 31, + "truncated": false, + "block": 1, + "row": 4366 + }, + { + "path": "tweetaLyze.py", + "sha256": "abf60916cf832aff7096a722ac45a43ce3d783b0013bb40e209bc9ba729cf350", + "language": "Python", + "lines": 408, + "truncated": false, + "block": 1, + "row": 9023 + }, + { + "path": "u_test.pl", + "sha256": "d79ef981d74dab0643ec7d0a8f6a1caac1b83eaa3d94e04d1bcc943222a86145", + "language": "Perl", + "lines": 81, + "truncated": false, + "block": 1, + "row": 4782 + }, + { + "path": "uasc.pl", + "sha256": "4a717196faf55451f653db12f469075ae7cb4268eb17e01fb9038f32d0dfd3c8", + "language": "Perl", + "lines": 102, + "truncated": false, + "block": 1, + "row": 4832 + }, + { + "path": "ungrouplist.pl", + "sha256": "8ab0fda7256bd009a90948b2735e8c5d6f9ac08ceb5c743e04029554b8ccc55f", + "language": "Perl", + "lines": 45, + "truncated": false, + "block": 1, + "row": 4536 + }, + { + "path": "uniprot2geneanswers.rmd", + "sha256": "e6dab97f21bf5979cbae555c5b66505d0a9ed8ae947eff7b9db2db6b3cd9f5e1", + "language": "R", + "lines": 498, + "truncated": false, + "block": 1, + "row": 10519 + }, + { + "path": "uniprotIDmap.r", + "sha256": "6f733877e9c4591f10607f5e5c0ac0d5f37df8f3a4313a2c100361e1a04a15bc", + "language": "R", + "lines": 39, + "truncated": false, + "block": 1, + "row": 10105 + }, + { + "path": "upgmac.pl", + "sha256": "304bd0f7ad29b7da9d497d2bdef7d2d067c02445c63e28d9aed7936edd565e32", + "language": "Perl", + "lines": 192, + "truncated": false, + "block": 1, + "row": 4887 + }, + { + "path": "upload.pl", + "sha256": "e79319c4f0fd2ac900a35881f5d1e1a2d50ba0396cbede5624f7a6edb07d999e", + "language": "Perl", + "lines": 59, + "truncated": false, + "block": 1, + "row": 4670 + }, + { + "path": "utr_tensorflow.py", + "sha256": "dded73e11078187b57e03764e853a2a51673ccd291b4be3f03486bfd0dd7c278", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 1, + "row": 7051 + }, + { + "path": "variantMS.rmd", + "sha256": "f9bc69602a8451d270b77381468321d51c244677cdff5121c528963d2d6207c7", + "language": "R", + "lines": 60, + "truncated": false, + "block": 1, + "row": 10099 + }, + { + "path": "vepExtract.py", + "sha256": "304279e4215ef348784e98b39275f2898026287dea339e7e1af52299634a5de7", + "language": "Python", + "lines": 259, + "truncated": false, + "block": 1, + "row": 8437 + }, + { + "path": "volcanoplot.rmd", + "sha256": "d988b8b84992b6793c847769fbb0f5bceb11a7291f7e211f5a335bce0df3db82", + "language": "R", + "lines": 74, + "truncated": false, + "block": 1, + "row": 10132 + }, + { + "path": "wa.pl", + "sha256": "b91866960591ea76f2e41db523a3850d0ccfd5490778c75b23c46cf0eb6e7ddd", + "language": "Perl", + "lines": 108, + "truncated": false, + "block": 1, + "row": 4850 + }, + { + "path": "watertest.pl", + "sha256": "34ab67afda16ae6e7782b55c356e2565d8355699f608c2f1aa52bfa2d16c4a72", + "language": "Perl", + "lines": 86, + "truncated": false, + "block": 1, + "row": 4753 + }, + { + "path": "webIntProtein.pl", + "sha256": "c2e9765c0065e3bf7e1f57f384d0121b31c310cb6e69b4c3a6870e9c8c99394c", + "language": "Perl", + "lines": 47, + "truncated": false, + "block": 1, + "row": 4612 + }, + { + "path": "weka.pl", + "sha256": "eb02c3ce966359d96ddef4bce38c0ba4f7fc65febbd3d529d31341635899df27", + "language": "Perl", + "lines": 17, + "truncated": false, + "block": 1, + "row": 4535 + }, + { + "path": "winmain.py", + "sha256": "37f28a6870c1ef48d2db18d72ae2a47856014ff995a0c2587f5c1935ea17ed40", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 1, + "row": 5225 + }, + { + "path": "wordCloud.r", + "sha256": "0d58b566804fd6775266fec6cf32b2a11c7055c8095e7906518e2c0386d6abb0", + "language": "R", + "lines": 76, + "truncated": false, + "block": 1, + "row": 10177 + }, + { + "path": "wordwrap.pl", + "sha256": "392144aa8017584948125a56360d0955b9021b500b1a677de2e699ceca58795d", + "language": "Perl", + "lines": 29, + "truncated": false, + "block": 1, + "row": 4473 + }, + { + "path": "writeScalar.pl", + "sha256": "e41f68118a3832284a96e69080ea7f1d157cb108db15614001d08f1a7d542765", + "language": "Perl", + "lines": 22, + "truncated": false, + "block": 1, + "row": 4457 + }, + { + "path": "wwwProxy.pl", + "sha256": "dbfc4122ac4c34c21c29900ac286989c64c6cd12b7fee482a966408fcbe59b65", + "language": "Perl", + "lines": 26, + "truncated": false, + "block": 1, + "row": 4549 + }, + { + "path": "ycompt.pl", + "sha256": "fa169aaa010669f40806822170be799a8dcc078357ad41fe45dde14f0d2d7d58", + "language": "Perl", + "lines": 67, + "truncated": false, + "block": 1, + "row": 4700 + }, + { + "path": "yorfsukanal.pl", + "sha256": "6f0b4c22e9f59eb5fd98cb131eca3079b39abad97d911d01f476456c71db2fd9", + "language": "Perl", + "lines": 67, + "truncated": false, + "block": 1, + "row": 4699 + }, + { + "path": "yuasmpos.pl", + "sha256": "5d5da77d4b354104f03a26da3227c79a4d3c2f6f7c95ef1c9dad477d9fffdc91", + "language": "Perl", + "lines": 110, + "truncated": false, + "block": 1, + "row": 4844 + } + ] +} \ No newline at end of file