diff --git a/LICENSE.md b/LICENSE.md new file mode 100644 index 0000000000000000000000000000000000000000..44bfd882f07cc92ffc500b25435aa8dc87a1f4a7 --- /dev/null +++ b/LICENSE.md @@ -0,0 +1,5 @@ +# Licenses + +This dataset has no license of its own. Every file keeps the license of the repository +it comes from, recorded in that repository's manifest (`manifests/…/.json`, +fields `license` and `license_confirmed_by`), with the repository's URL and commit. diff --git a/README.md b/README.md new file mode 100644 index 0000000000000000000000000000000000000000..e5b47e62ed63fbeb049383f309dcc0b1e4184dc7 --- /dev/null +++ b/README.md @@ -0,0 +1,67 @@ +--- +license: other +license_name: per-file +license_link: LICENSE.md +pretty_name: Open Scientific Code Registry (OSCR) scripts +tags: +- neuroscience +- research-software +- code +- reproducibility +configs: +- config_name: scripts + data_files: blocks/*.parquet +--- + +# Open Scientific Code Registry (OSCR): the authors' scripts + +The code published by the authors of open-access neuroscience papers, as found and +verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified +commit, **under the license of its repository**. + +- **14,864 unique files** (127 MB of text) from **375 repositories**, + in 2 Parquet block(s). +- **Only files whose repository's license allows redistribution**, confirmed by the + repository's own license file (or, for an archive without one, by its record). Files + without such a license are never copied here: Open Scientific Code Registry (OSCR) links to them at the source. +- No text of any paper. + +## Layout + +- `blocks/NNNNN.parquet`: one row per unique file (SHA-256 of its text): + `sha256`, `language`, `size`, `lines`, `content`. zstd page compression, 64 rows per + row group: a single file can be read with HTTP range requests (for example with + hyparquet in a browser). A published block never changes; new files go into new + blocks. +- `manifests//.json`: per repository, its URL, commit and license, and + for each file its path, digest, and the (block, row) holding its text. + +## Licenses + +Each file keeps the license of its repository, given in the repository's manifest +(`license`, `license_confirmed_by`). Repositories by license: + +| license | repositories | +|---|---| +| MIT | 178 | +| CC-BY-4.0 | 72 | +| GPL-3.0 | 52 | +| Apache-2.0 | 22 | +| BSD-3-Clause | 17 | +| CC0-1.0 | 10 | +| GPL-2.0 | 5 | +| CC-BY-NC-SA-4.0 | 5 | +| BSD-2-Clause | 4 | +| AGPL-3.0 | 3 | +| CC-BY-NC-ND-4.0 | 2 | +| CC-BY-NC-4.0 | 2 | +| other-open | 1 | +| LGPL-3.0 | 1 | +| CC-BY-SA-4.0 | 1 | + +Files under a non-commercial license (CC BY-NC…) may only be reused non-commercially. + +## Takedown + +An author who wants a file removed: open an issue at +https://github.com/yannbellec/Open-Scientific-Code-Registry-OSCR-/issues. diff --git a/blocks/00001.parquet b/blocks/00001.parquet new file mode 100644 index 0000000000000000000000000000000000000000..34bb5f56851bae900ae3d3e25b76c4438c0d4d8c --- /dev/null +++ b/blocks/00001.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1ce7743a7c8238427006d963e0cbcfa4ea29e7d54fd41f2ade4f4591efcd1634 +size 19762427 diff --git a/blocks/00002.parquet b/blocks/00002.parquet new file mode 100644 index 0000000000000000000000000000000000000000..919154e8cd71e73c20473bdc4535e8696887c94c --- /dev/null +++ b/blocks/00002.parquet @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7830bb81db406ca092745accfc7461db7f2045462e22018388455a1300995839 +size 4395109 diff --git a/manifests/00/github.com__uva-liu__uva-liu-uva-insular-ieeg-neuropathic-pain-analysis.json b/manifests/00/github.com__uva-liu__uva-liu-uva-insular-ieeg-neuropathic-pain-analysis.json new file mode 100644 index 0000000000000000000000000000000000000000..55bf8154f20fb7c2da3155a9cd2350c8a345eb8a --- /dev/null +++ b/manifests/00/github.com__uva-liu__uva-liu-uva-insular-ieeg-neuropathic-pain-analysis.json @@ -0,0 +1,93 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/uva-liu/uva-liu-uva-insular-ieeg-neuropathic-pain-analysis", + "url": "https://github.com/UVA-LIU/UVA-LIU-uva-insular-iEEG-neuropathic-pain-analysis", + "host": "github.com", + "commit": "a9e7743c02a909f149875feb810ba3a0ca7bf5c3", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "618b16e82fa2b1f7f78889be3d930fb66f65f0e32bb1fc3a676d1d62a8272980", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2085 + }, + { + "path": "README.md", + "sha256": "ecb7804afa39ae94a967769e6660099c12bdd907e935df4606147144d66315a9", + "language": "Text", + "lines": 128, + "truncated": false, + "block": 1, + "row": 11875 + }, + { + "path": "build_bipolar_montage.m", + "sha256": "2c230c193bfad5fe8dd0877f3823064a1ef654548c7a3d8204f5190689f13962", + "language": "MATLAB", + "lines": 427, + "truncated": false, + "block": 1, + "row": 4139 + }, + { + "path": "build_connectivity_longtable.m", + "sha256": "2770153ec3db3a596cab1eb2f4f076f966cbe0ebf12ac5f8b3e6903d2f9b9368", + "language": "MATLAB", + "lines": 196, + "truncated": false, + "block": 1, + "row": 3737 + }, + { + "path": "compute_psd_metrics.m", + "sha256": "b7ff416805774b95ca3b7eb454958760ed0637421a5710641966cfc0a4cba3a4", + "language": "MATLAB", + "lines": 174, + "truncated": false, + "block": 1, + "row": 3626 + }, + { + "path": "run_all_analysis.m", + "sha256": "5648c9c3fd9e4039de18df2fe9df8a3bb2b49d96e1987de253dee690218dd650", + "language": "MATLAB", + "lines": 83, + "truncated": false, + "block": 1, + "row": 3318 + }, + { + "path": "run_bipolar_qc.m", + "sha256": "f24a3f32ad3a2197c7b1b36a71e7f3fb7d2c15b50cadcd0d4434af9a367d6068", + "language": "MATLAB", + "lines": 174, + "truncated": false, + "block": 1, + "row": 3705 + }, + { + "path": "run_connectivity_lme_models.m", + "sha256": "d33bd2e873aec1b5cfedddee7e61074c727a68e16fe3665b76f9eb63b6069e91", + "language": "MATLAB", + "lines": 422, + "truncated": false, + "block": 1, + "row": 4177 + }, + { + "path": "run_psd_lme_models.m", + "sha256": "a3d0fb799327722241cf3b213477b0c2abac05603696eb9ebb68ba039bdc9f4c", + "language": "MATLAB", + "lines": 303, + "truncated": false, + "block": 1, + "row": 4101 + } + ] +} \ No newline at end of file diff --git a/manifests/02/github.com__brsynth__amn_release.json b/manifests/02/github.com__brsynth__amn_release.json new file mode 100644 index 0000000000000000000000000000000000000000..b6637b0ad202dddca34373f40773508a06d11569 --- /dev/null +++ b/manifests/02/github.com__brsynth__amn_release.json @@ -0,0 +1,183 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/brsynth/amn_release", + "url": "https://github.com/brsynth/amn_release", + "host": "github.com", + "commit": "10db2a62e8ea17b303ce21a9a1261b7328f861e9", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Build_Dataset.ipynb", + "sha256": "922e3116256464cb76ab342fa7560aa4e5c615ae056742f0c57f4eb3df6709b6", + "language": "Jupyter", + "lines": 383, + "truncated": false, + "block": 2, + "row": 1091 + }, + { + "path": "Build_Dataset_KO.ipynb", + "sha256": "a0934617197e78f81b50ea8ec7558dc6c01cf72f5987bb07820df13bf35031f8", + "language": "Jupyter", + "lines": 179, + "truncated": false, + "block": 2, + "row": 1047 + }, + { + "path": "Build_Experimental.ipynb", + "sha256": "0e3833d8d23e780f2dc9e5980379f79ba4aa2b79cb54bde726a43e6dc1d24a8e", + "language": "Jupyter", + "lines": 248, + "truncated": false, + "block": 2, + "row": 1070 + }, + { + "path": "Build_Model_AMN.ipynb", + "sha256": "796b079e3ddde71015a303c3c10c182ba52fda0cc9afa255174d276933cafffa", + "language": "Jupyter", + "lines": 659, + "truncated": false, + "block": 2, + "row": 1104 + }, + { + "path": "Build_Model_AMN_KO.ipynb", + "sha256": "c8764991368c5dd702a18164f1bb6ed695c936ac7d270b9be2e62af2109bc2fc", + "language": "Jupyter", + "lines": 128, + "truncated": false, + "block": 2, + "row": 1030 + }, + { + "path": "Build_Model_ANN_Dense.ipynb", + "sha256": "c8380106f6e90c036c30ded92394ec65da91421a13e7784e1e03c92d407e2aca", + "language": "Jupyter", + "lines": 260, + "truncated": false, + "block": 2, + "row": 1067 + }, + { + "path": "Build_Model_MM.ipynb", + "sha256": "4e12a2437fad2ffc16e3075c8043c972e62c53d815ea2b248cadb0ce279c56ab", + "language": "Jupyter", + "lines": 181, + "truncated": false, + "block": 2, + "row": 1045 + }, + { + "path": "Build_Model_RC.ipynb", + "sha256": "6725f6f41c6d17a3eb04a701a1c7d40bc99d51a68f97bbe23767132f92c244be", + "language": "Jupyter", + "lines": 212, + "truncated": false, + "block": 2, + "row": 1061 + }, + { + "path": "Duplicate_Model.ipynb", + "sha256": "8630bc663a896039b33ed9ff17e3e0d0c34b26d444615a6ada862927955e6e1c", + "language": "Jupyter", + "lines": 217, + "truncated": false, + "block": 2, + "row": 1068 + }, + { + "path": "Figures.ipynb", + "sha256": "de5c4b5aba006cc2cf5c570f8a744a4e08a31493e869d2901f637b932bf77831", + "language": "Jupyter", + "lines": 991, + "truncated": false, + "block": 2, + "row": 1112 + }, + { + "path": "LICENSE", + "sha256": "50b64138e511d16186b7a407bf256dbc36cc43e775ed64b8301c1d614334f070", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1145 + }, + { + "path": "Library/Build_Dataset.py", + "sha256": "2686e39ec4a1fb65b6f1df7c62262f8ce70c4580e7b13a308ea4ec7dd9b60d61", + "language": "Python", + "lines": 862, + "truncated": false, + "block": 2, + "row": 2215 + }, + { + "path": "Library/Build_Dataset_KO.py", + "sha256": "c9c7976fd20bfd47857b984635b35dc6eae26a267e73b5f5f5b683d5580a9293", + "language": "Python", + "lines": 955, + "truncated": false, + "block": 2, + "row": 2224 + }, + { + "path": "Library/Build_Experimental.py", + "sha256": "30446d710fab1be3314315deeb42fc47a8f2aa7f15cee1d5719a8f7fb1cdb1fd", + "language": "Python", + "lines": 227, + "truncated": false, + "block": 2, + "row": 2074 + }, + { + "path": "Library/Build_Model.py", + "sha256": "e7000a14313bead46dd85179c4f5440b019de590ab2600da7cba13bb3d63ab3a", + "language": "Python", + "lines": 1582, + "truncated": false, + "block": 2, + "row": 2245 + }, + { + "path": "Library/Build_Model_KO.py", + "sha256": "eb6520d343c8fc04b5eb2e11894424621b813ed6b9ed2954040cd2a2a8b8884a", + "language": "Python", + "lines": 1559, + "truncated": false, + "block": 2, + "row": 2244 + }, + { + "path": "Library/Duplicate_Model.py", + "sha256": "04353e2ec49f97d1c6378aba381f44a59379ca662c112fe4373f746356ec052e", + "language": "Python", + "lines": 358, + "truncated": false, + "block": 2, + "row": 2121 + }, + { + "path": "README.md", + "sha256": "b47466e8e978a041ec192897b4b3af7f3b3572cd481bd80cda1b68c220dace70", + "language": "Text", + "lines": 96, + "truncated": false, + "block": 2, + "row": 2647 + }, + { + "path": "Tutorial.ipynb", + "sha256": "a5ec3004dca54185afe89bcaeb84a11ead8de769a696896b349a54e2a3b2ccae", + "language": "Jupyter", + "lines": 388, + "truncated": false, + "block": 2, + "row": 1089 + } + ] +} \ No newline at end of file diff --git a/manifests/02/github.com__scan-nrad__dl-direct.json b/manifests/02/github.com__scan-nrad__dl-direct.json new file mode 100644 index 0000000000000000000000000000000000000000..a1f6f4c46ccfadfd6277308c99874f1544b8eb77 --- /dev/null +++ b/manifests/02/github.com__scan-nrad__dl-direct.json @@ -0,0 +1,147 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/scan-nrad/dl-direct", + "url": "https://github.com/SCAN-NRAD/DL-DiReCT", + "host": "github.com", + "commit": "c750348c569f9dc1c8321048c1ab374b2daca61d", + "license": "BSD-3-Clause", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "0643dd2dea513ab7008e82f1901d59dc20f2693e9c983ef35f5326959beb8a6f", + "language": "License", + "lines": 29, + "truncated": false, + "block": 2, + "row": 1148 + }, + { + "path": "README.md", + "sha256": "b8d8fd05a1ef35b0c4ccceda7398abfe15ea2e318114b0cfba204b9696f8e31f", + "language": "Text", + "lines": 62, + "truncated": false, + "block": 2, + "row": 2625 + }, + { + "path": "batch-dl+direct.sh", + "sha256": "8e399bf02de27ca22440ef5e2eee80ddabfd25cbba34702bab559d6f4df936db", + "language": "Shell", + "lines": 133, + "truncated": false, + "block": 2, + "row": 2563 + }, + { + "path": "direct.sh", + "sha256": "a32c82b8775a2ea6c0152dc61cf4baf871629269dfb91039ec1ba04360589ef0", + "language": "Shell", + "lines": 56, + "truncated": false, + "block": 2, + "row": 2529 + }, + { + "path": "dl+direct.sh", + "sha256": "6dfffcc49f82f9c15bae2ff394344c2514945da6b4e1bf4e5ef5b0ba68cf852c", + "language": "Shell", + "lines": 157, + "truncated": false, + "block": 2, + "row": 2574 + }, + { + "path": "src/DeepSCAN_Anatomy_Newnet_apply.py", + "sha256": "f1cfa9b41f6be1e1b3e27de17bc300e308f688f4bf2d6d27d02d4527a6de6f99", + "language": "Python", + "lines": 488, + "truncated": false, + "block": 2, + "row": 2172 + }, + { + "path": "src/DiReCT.py", + "sha256": "6127568cf0a53028fe628180ec21c6c3355dd5b6dcf43726d9ea6164ce0bfcaa", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 2, + "row": 1841 + }, + { + "path": "src/bet.py", + "sha256": "e6ae217be7bbfaebffa01b2334e53143874850eba855535dfb52394eb955f669", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 2, + "row": 1870 + }, + { + "path": "src/conform.py", + "sha256": "0381378337435564d232384e29987fa64b5f8db3f1c1c35f3d83f87bd67e0d63", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 2, + "row": 1735 + }, + { + "path": "src/crop.py", + "sha256": "d8cbfaa7596160fcc50bd94bf955f648e744c2803b2ea0fe6f6df60c34406518", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 2, + "row": 1756 + }, + { + "path": "src/extract_stats.py", + "sha256": "f21cadfe8b3e7c3ded00cc2cba5e11270e2261528947b41da32ba68a6616e5b8", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 2, + "row": 1920 + }, + { + "path": "src/radiomics2table.py", + "sha256": "0d966e55819fb6ea2a071b2204023ee372f371f575842e283c920d77e467b1bb", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 2, + "row": 1728 + }, + { + "path": "src/radiomics_extractor.py", + "sha256": "8374415cecbd62c428c368e1930b26b54d22ec424beecef82dd17fefcd2884dc", + "language": "Python", + "lines": 115, + "truncated": false, + "block": 2, + "row": 1907 + }, + { + "path": "src/run_script.py", + "sha256": "d16a0c4350301c5dac9b0187fd86ce188a58a628623a4ce08756f1042814cc9f", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 2, + "row": 1622 + }, + { + "path": "src/stats2table.py", + "sha256": "d9b24d058e8a2d28ec90f5b7ab2bd43028744f6071b01d98e1530aa2ab51f424", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 2, + "row": 1847 + } + ] +} \ No newline at end of file diff --git a/manifests/02/zenodo__20798972.json b/manifests/02/zenodo__20798972.json new file mode 100644 index 0000000000000000000000000000000000000000..83e86945a2d9729a30f1ba025cab44c2458462be --- /dev/null +++ b/manifests/02/zenodo__20798972.json @@ -0,0 +1,273 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:20798972", + "url": "https://doi.org/10.5281/zenodo.20798972", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "ParamSweepGit/WongWangFluc.m", + "sha256": "d0ba73c2a97422d1eafbbdc14c7e9db7be6434a2833f8938f9bfd60759d1cd6d", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 1, + "row": 2833 + }, + { + "path": "ParamSweepGit/main_script.m", + "sha256": "dbc1b600702ed4338f9c43fd812c6db8d33776b85ed8298004701a17e9f496da", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 1, + "row": 2974 + }, + { + "path": "README.md", + "sha256": "d76e5be03d7b653d84021b70da50334079342a3e947f437b24b92479e40cca62", + "language": "Text", + "lines": 1, + "truncated": false, + "block": 1, + "row": 11767 + }, + { + "path": "dfc-walk/BuildSpeedHistogram.m", + "sha256": "9ec6a5b5e92f499d701630bf6ff2823eb103f15c6a5ceabd59ca4bf4632f38fd", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 1, + "row": 3081 + }, + { + "path": "dfc-walk/DFA_fun.m", + "sha256": "20634d5c03492751b4d75bf2a64d6611da973187e9bfa9076f62897964d13456", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 1, + "row": 3079 + }, + { + "path": "dfc-walk/ExtractTrimerStrengths.m", + "sha256": "af87dd160ec6daefeb183ba9405159dfaa8edf3dedd65341a07c669c47cb8bfb", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 1, + "row": 3012 + }, + { + "path": "dfc-walk/Matrix2Vec.m", + "sha256": "c8bbe0725d30ed4066afe20ba9491faa73dbf3c54d9e7c109b4e981358481af8", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 1, + "row": 2476 + }, + { + "path": "dfc-walk/Mutual_Information_Labels.m", + "sha256": "e2ac73d177c946b72d2a53a2f4b96b26c3f762fb49e877590b81195436cd86e1", + "language": "MATLAB", + "lines": 66, + "truncated": false, + "block": 1, + "row": 3048 + }, + { + "path": "dfc-walk/PhaseRand_surrogates.m", + "sha256": "81bc9b8db0048836f1e9cc17dda067ad3888348a758c3f032c30a054e696475b", + "language": "MATLAB", + "lines": 96, + "truncated": false, + "block": 1, + "row": 3299 + }, + { + "path": "dfc-walk/Pick_MCModuleStream.m", + "sha256": "3b367a69be7659e43058dc5f4693f7cd78b4fd488db51ed3b6e7f6a7b42f3f52", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 1, + "row": 2937 + }, + { + "path": "dfc-walk/Pick_StarStream.m", + "sha256": "5987049380d19fe13a8ffb2e5cb84ba72217bda7635d1b8269420af1ecf3f67e", + "language": "MATLAB", + "lines": 53, + "truncated": false, + "block": 1, + "row": 2998 + }, + { + "path": "dfc-walk/Pick_SubgraphStream.m", + "sha256": "6f762c524f66db1eaa1b977c1f13c114ef020bf844468c7e2a6ee3f5ccf7885a", + "language": "MATLAB", + "lines": 53, + "truncated": false, + "block": 1, + "row": 2991 + }, + { + "path": "dfc-walk/PlotSpeedHisto.m", + "sha256": "5d81922a2d886222d9a8e7e242ec1a333eaa029eea0499944cd0bb501a8197b9", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 1, + "row": 2425 + }, + { + "path": "dfc-walk/TS2FC.m", + "sha256": "94636a797498153c3e465af23be40f21e7987ab0ce54d5f8621baced1e8054f9", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 1, + "row": 2644 + }, + { + "path": "dfc-walk/TS2dFCstream.m", + "sha256": "41d2f321eacc7e8d6d1cb268f5bc3c181db17f7b7b3de073f286612b5485e47e", + "language": "MATLAB", + "lines": 85, + "truncated": false, + "block": 1, + "row": 3230 + }, + { + "path": "dfc-walk/TS2eFC.m", + "sha256": "98746a7e5e2d680d56bcdabaf2f41f1b9d81329bf8fbc611650351d1d800c070", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 1, + "row": 2551 + }, + { + "path": "dfc-walk/Which_Link_ThisMCIndex.m", + "sha256": "83569f13198c05ac92ecda40bab0a7055a74900a833a3400ee324099ab66f944", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 1, + "row": 2518 + }, + { + "path": "dfc-walk/Which_MCIndex_ThisLink.m", + "sha256": "83cedc809d73d08084badafc9bd38fcd9c2b4ebf12edcfe85e415db6c4d95f20", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 1, + "row": 2546 + }, + { + "path": "dfc-walk/Which_StreamIndex_ThisLink.m", + "sha256": "9264645f24d722966f0650abf4528e95ad12b7f34e896985cbf0b500587f60b6", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 1, + "row": 2619 + }, + { + "path": "dfc-walk/Which_StreamIndices_ThisMCmodule.m", + "sha256": "4bca67fd7635bd9f1b06bf3a4235f36693c80e217e9cdc9e7988b29a1e597231", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 1, + "row": 3117 + }, + { + "path": "dfc-walk/community_louvain.m", + "sha256": "a230b69bb01db03ac48b6a273d93b76574ff0326978e003f77c265c311961260", + "language": "MATLAB", + "lines": 198, + "truncated": false, + "block": 1, + "row": 3909 + }, + { + "path": "dfc-walk/dFC_Speeds.m", + "sha256": "7caa7b717aba26ba8bd4e9b71124832996a742ea537e36c3f3a2492af301fb7f", + "language": "MATLAB", + "lines": 70, + "truncated": false, + "block": 1, + "row": 3094 + }, + { + "path": "dfc-walk/dFCstream2MC.m", + "sha256": "289ffa6774aaabbe6e9096525713495675b095b283558d6ca4fb88a8f09ed14a", + "language": "MATLAB", + "lines": 135, + "truncated": false, + "block": 1, + "row": 3540 + }, + { + "path": "dfc-walk/dFCstream2dFC.m", + "sha256": "c67fce896c09412363ce88f30697daac8a46ca55cb93a7ac445a3db65e6ae7cf", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 1, + "row": 2628 + }, + { + "path": "filter-lib/FilterAllChannels.m", + "sha256": "badf680a2314d9f47d37ad23c9cdd5a698e883911730b75b0a18ee95d8557731", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 1, + "row": 2326 + }, + { + "path": "filter-lib/bandpasshopf.m", + "sha256": "f434c32d30e19a991286b6ca7d5fbe9f2fe162769d1995ddf7ee282a8ca96cd7", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 1, + "row": 2576 + }, + { + "path": "filter-lib/convert_back_to_time.m", + "sha256": "47e6e078b05bcf83be91225ba7f7d2894f08a30b06ebb8037b5598488821fffa", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 1, + "row": 2574 + }, + { + "path": "fld-dim/MA_EEG_Man_Dim_Flui.m", + "sha256": "da5c9088bb60e620cbf0f4da88640aea52559275c239942df7de848fada19937", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 1, + "row": 2704 + }, + { + "path": "fld-dim/extremal_Sueveges.m", + "sha256": "8ed6049a9161a12dba50ecfccd07fadc07b95bf1c069ac5648c63f5dd71b0caf", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 1, + "row": 2345 + } + ] +} \ No newline at end of file diff --git a/manifests/02/zenodo__20819668.json b/manifests/02/zenodo__20819668.json new file mode 100644 index 0000000000000000000000000000000000000000..3a3ff5cb17deee0ed6f90fa3e6274579764f96c5 --- /dev/null +++ b/manifests/02/zenodo__20819668.json @@ -0,0 +1,48 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:20819668", + "url": "https://doi.org/10.5281/zenodo.20819668", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "1edbaf669cf27dd23651022d85d352edc368412d7003a14b8dd3a9d023a3cb24", + "language": "Text", + "lines": 140, + "truncated": false, + "block": 1, + "row": 11925 + }, + { + "path": "brain_stride_apply_lme.Rmd", + "sha256": "c999d8a462115fe5f9f4c42b6307f16c40a00ce09c8de32b77b3f974738e284e", + "language": "R", + "lines": 325, + "truncated": false, + "block": 1, + "row": 10437 + }, + { + "path": "brain_stride_apply_longcombat.Rmd", + "sha256": "84334e38dcf5941b64efcfd9f1bcac3c55dbce13a1c919e3c04de0cba44cf498", + "language": "R", + "lines": 429, + "truncated": false, + "block": 1, + "row": 10492 + }, + { + "path": "brain_stride_lifestyle_analysis.Rmd", + "sha256": "2b47c1fdea991f030e47c74ad8efffe52a14f1476fa2233e4d6445fa8bef9a49", + "language": "R", + "lines": 202, + "truncated": false, + "block": 1, + "row": 10333 + } + ] +} \ No newline at end of file diff --git a/manifests/04/github.com__rpomponio__neuroharmonize.json b/manifests/04/github.com__rpomponio__neuroharmonize.json new file mode 100644 index 0000000000000000000000000000000000000000..e2641daee7e5e8e37e633e28f9a7ac6b44ba4709 --- /dev/null +++ b/manifests/04/github.com__rpomponio__neuroharmonize.json @@ -0,0 +1,120 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/rpomponio/neuroharmonize", + "url": "https://github.com/rpomponio/neuroHarmonize", + "host": "github.com", + "commit": "89ef77fa44c7c5f11113e22f766cc66a9776af71", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "6c47cbce0b0787f0ecf045619e1b87364e1b91d70bff9d97e7500bc349ee1353", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2117 + }, + { + "path": "README.md", + "sha256": "1c963429a0e2cdc8741aadd61103187dd33bb925089087278d85d2a52ae732ee", + "language": "Text", + "lines": 294, + "truncated": false, + "block": 1, + "row": 11972 + }, + { + "path": "neuroHarmonize/__init__.py", + "sha256": "bef25a9f639222fadc3e33316b683b2659bba01afc96b63b46033779783e8e66", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5163 + }, + { + "path": "neuroHarmonize/harmonizationApply.py", + "sha256": "d3c0903f70ba7174b70b8b2f2cc2d6da994349e8860d469c5e5b9afc8c4960ca", + "language": "Python", + "lines": 257, + "truncated": false, + "block": 1, + "row": 8436 + }, + { + "path": "neuroHarmonize/harmonizationLearn.py", + "sha256": "1c1a22e352f4766a7a84d86ea3539f0e421afa4d76111b195305c36e0d1ab1f9", + "language": "Python", + "lines": 401, + "truncated": false, + "block": 1, + "row": 9271 + }, + { + "path": "neuroHarmonize/harmonizationNIFTI.py", + "sha256": "37b0c901a2192c95292561f28ba41885328fafb647e102621d1f9fc49bc1ef69", + "language": "Python", + "lines": 203, + "truncated": false, + "block": 1, + "row": 8269 + }, + { + "path": "setup.py", + "sha256": "f534de187443c700a0f839ce3d0b0174a29b69dbbb36804d1737e31734b31b74", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 1, + "row": 6111 + }, + { + "path": "tests/__init__.py", + "sha256": "99eaac595c359937cfb56e607ce4df2cd9ad4249dcbbc92a1a0218e73dc6661c", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4994 + }, + { + "path": "tests/conftest.py", + "sha256": "ff2e09105a6b7fe7cf1eacb843740253dd3aad27fc345bb0a40491ec41f5a93a", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 1, + "row": 6075 + }, + { + "path": "tests/test_determinism.py", + "sha256": "a092b006f30314465398e578a13b80f59de7c9fd3c8d8ff7b826bad693f6d1a9", + "language": "Python", + "lines": 197, + "truncated": false, + "block": 1, + "row": 7947 + }, + { + "path": "tests/test_harmonization_consistency.py", + "sha256": "5c887f63e82b2099d060fce0d072979a9778ac8becd464a2b9d4f1f6f02fa2b6", + "language": "Python", + "lines": 192, + "truncated": false, + "block": 1, + "row": 7972 + }, + { + "path": "tests/test_nifti_consistency.py", + "sha256": "509b478f473e1ff13717e310aeddc57b2680cd7feb3c085fe8db1fccd546930d", + "language": "Python", + "lines": 197, + "truncated": false, + "block": 1, + "row": 8158 + } + ] +} \ No newline at end of file diff --git a/manifests/04/github.com__younesvalibeigi__coupled-cardiac-system.json b/manifests/04/github.com__younesvalibeigi__coupled-cardiac-system.json new file mode 100644 index 0000000000000000000000000000000000000000..52d65b85a36a05f74d3c5b6a87df170ffa7fbc1a --- /dev/null +++ b/manifests/04/github.com__younesvalibeigi__coupled-cardiac-system.json @@ -0,0 +1,14349 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/younesvalibeigi/coupled-cardiac-system", + "url": "https://github.com/younesvalibeigi/Coupled-Cardiac-System", + "host": "github.com", + "commit": "fbef46693d6d2e37719144175345d1c2da4a6200", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "5dac87deceb5db4ad4bb6b3d0b7721878e1f9a68c92a4437eebfafea25128a4b", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2144 + }, + { + "path": "Python_Data-Analysis/PhotoDiod_Analysis.py", + "sha256": "227c37b582d9ba773b0cbecc7bee7992ba0b6dec07225dcf46b105f51e42d153", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 1, + "row": 6178 + }, + { + "path": "Python_Data-Analysis/fixedDelay.py", + "sha256": "73f9afebef57ff23c28daeda078e86c0e08a24c89fb329900dd2a57f934bd4dc", + "language": "Python", + "lines": 156, + "truncated": false, + "block": 1, + "row": 7375 + }, + { + "path": "Python_Data-Analysis/read-ROI-files.py", + "sha256": "97611b27632debd97f894087dc5608a95d3bf3b97d55912c16fe107f15c240f4", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 1, + "row": 5906 + }, + { + "path": "Python_Data-Analysis/readCyclePeriods_FromNodeJS.py", + "sha256": "5ce12a233936c41dc1e171b43aa838d70447c49b2e0b28cc39ed8f6f3df9dcb2", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 1, + "row": 5598 + }, + { + "path": "README.md", + "sha256": "682ff39b9fee02d391dcd4a71c86c6a81374c5d91a898c524591046d10ebc7eb", + "language": "Text", + "lines": 805, + "truncated": false, + "block": 1, + "row": 11994 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/binding-abstract/lib/index.js", + "sha256": "ad699b9b42ad45bf0476042cfb7a8a05affdc253bbc58ca4e23a907947020932", + "language": "JavaScript", + "lines": 222, + "truncated": false, + "block": 1, + "row": 1395 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/binding-abstract/node_modules/debug/src/browser.js", + "sha256": "4e3dc6d0e1db58a0d74206b443f35582d3b717be56a0f6d030c34af6c2ad9f62", + "language": "JavaScript", + "lines": 269, + "truncated": false, + "block": 1, + "row": 1329 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/binding-abstract/node_modules/debug/src/common.js", + "sha256": "ae6855e9f5ef6687aa8f76e69dd1854f1b99985146434daff310150083cfde02", + "language": "JavaScript", + "lines": 261, + "truncated": false, + "block": 1, + "row": 1332 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/binding-abstract/node_modules/debug/src/index.js", + "sha256": "aa127ff1752b7d9c7415c5c7bb6994d9aa722b81bcbcab4bd48316b013d23bf3", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 616 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/binding-abstract/node_modules/debug/src/node.js", + "sha256": "f237adcb52849de7c128f57e0468b52353c529a6c8341810477c0e7144359559", + "language": "JavaScript", + "lines": 263, + "truncated": false, + "block": 1, + "row": 1283 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/binding-abstract/node_modules/ms/index.js", + "sha256": "55986972f5f3c9446f876c576e1cd30fd4f04cd26527efbb5ad834637c740e4c", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1169 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/binding-mock/lib/index.js", + "sha256": "02c29fefc263bca25c07c2f19b082efbb1618a85e150399716d245536aa7c946", + "language": "JavaScript", + "lines": 233, + "truncated": false, + "block": 1, + "row": 1319 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/binding-mock/lib/legacy.js", + "sha256": "5b81d2da89374aca3e891db5f79186e1c7288e73e4be39aadc16377e81d276bd", + "language": "JavaScript", + "lines": 26, + "truncated": false, + "block": 1, + "row": 726 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/binding-mock/node_modules/debug/src/browser.js", + "sha256": "4e3dc6d0e1db58a0d74206b443f35582d3b717be56a0f6d030c34af6c2ad9f62", + "language": "JavaScript", + "lines": 269, + "truncated": false, + "block": 1, + "row": 1329 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/binding-mock/node_modules/debug/src/common.js", + "sha256": "ae6855e9f5ef6687aa8f76e69dd1854f1b99985146434daff310150083cfde02", + "language": "JavaScript", + "lines": 261, + "truncated": false, + "block": 1, + "row": 1332 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/binding-mock/node_modules/debug/src/index.js", + "sha256": "aa127ff1752b7d9c7415c5c7bb6994d9aa722b81bcbcab4bd48316b013d23bf3", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 616 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/binding-mock/node_modules/debug/src/node.js", + "sha256": "f237adcb52849de7c128f57e0468b52353c529a6c8341810477c0e7144359559", + "language": "JavaScript", + "lines": 263, + "truncated": false, + "block": 1, + "row": 1283 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/binding-mock/node_modules/ms/index.js", + "sha256": "55986972f5f3c9446f876c576e1cd30fd4f04cd26527efbb5ad834637c740e4c", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1169 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/lib/darwin.js", + "sha256": "3805d0cb29dd6f7d22873a24faa0dfc0f1799e63ab01d51360755d6def131283", + "language": "JavaScript", + "lines": 110, + "truncated": false, + "block": 1, + "row": 1139 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/lib/index.js", + "sha256": "a1712039aa76f42c0bf5da9b0b3cc4080fc3da8b7366ad6f456d2348d1f55769", + "language": "JavaScript", + "lines": 15, + "truncated": false, + "block": 1, + "row": 645 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/lib/legacy.js", + "sha256": "5b81d2da89374aca3e891db5f79186e1c7288e73e4be39aadc16377e81d276bd", + "language": "JavaScript", + "lines": 26, + "truncated": false, + "block": 1, + "row": 726 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/lib/linux-list.js", + "sha256": "b18cbd1238e8e7b228517641670b0d31a8f4110dc96acbe4aa120d82a586b92e", + "language": "JavaScript", + "lines": 100, + "truncated": false, + "block": 1, + "row": 1121 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/lib/linux.js", + "sha256": "33141436365765d92db7e67261d83016fb5b491f90d73d13ca47e849f141f9b8", + "language": "JavaScript", + "lines": 110, + "truncated": false, + "block": 1, + "row": 1137 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/lib/poller.js", + "sha256": "424e965a6ea648b39177e2755c8ea6b50b5d40b41c0c29d26bc227af28f60dfb", + "language": "JavaScript", + "lines": 111, + "truncated": false, + "block": 1, + "row": 1147 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/lib/unix-read.js", + "sha256": "8d3cfaedd7aa7a565f73cd0bcb3e7dac1d5d74b231f7e966f5dcb982d12a1289", + "language": "JavaScript", + "lines": 57, + "truncated": false, + "block": 1, + "row": 1004 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/lib/unix-write.js", + "sha256": "75416bc5bca63b31889fdabe6e29d6f00f696e05c469f868c70829da062fa8f8", + "language": "JavaScript", + "lines": 57, + "truncated": false, + "block": 1, + "row": 1040 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/lib/win32-sn-parser.js", + "sha256": "5e814ca196ff403a42fe5ab90c7555325496841f410ae6a35b1f0aa6415364e7", + "language": "JavaScript", + "lines": 14, + "truncated": false, + "block": 1, + "row": 593 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/lib/win32.js", + "sha256": "e51b6213a8da449e23cc99a4858a51269c1a662d95c37b8cc55f85566469e501", + "language": "JavaScript", + "lines": 123, + "truncated": false, + "block": 1, + "row": 1167 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/node_modules/debug/src/browser.js", + "sha256": "4e3dc6d0e1db58a0d74206b443f35582d3b717be56a0f6d030c34af6c2ad9f62", + "language": "JavaScript", + "lines": 269, + "truncated": false, + "block": 1, + "row": 1329 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/node_modules/debug/src/common.js", + "sha256": "ae6855e9f5ef6687aa8f76e69dd1854f1b99985146434daff310150083cfde02", + "language": "JavaScript", + "lines": 261, + "truncated": false, + "block": 1, + "row": 1332 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/node_modules/debug/src/index.js", + "sha256": "aa127ff1752b7d9c7415c5c7bb6994d9aa722b81bcbcab4bd48316b013d23bf3", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 616 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/node_modules/debug/src/node.js", + "sha256": "f237adcb52849de7c128f57e0468b52353c529a6c8341810477c0e7144359559", + "language": "JavaScript", + "lines": 263, + "truncated": false, + "block": 1, + "row": 1283 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/node_modules/ms/index.js", + "sha256": "55986972f5f3c9446f876c576e1cd30fd4f04cd26527efbb5ad834637c740e4c", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1169 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/src/darwin_list.cpp", + "sha256": "2e862acf8ddb8c1ce2f0e969c1e351a69e7b0dc3148fe1fe9199b1e28859e945", + "language": "C++", + "lines": 359, + "truncated": false, + "block": 1, + "row": 266 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/src/darwin_list.h", + "sha256": "1cdef85c1dd87c3e13c6da4ed68a2a1228244f1fb8b0eaa9c9d62f3490ac9a3d", + "language": "C/C++", + "lines": 46, + "truncated": false, + "block": 1, + "row": 325 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/src/poller.cpp", + "sha256": "efd7adc2b6b6b25f08f3875e3c7ff74a3341fb3f6fc19fc003ec06b36066912d", + "language": "C++", + "lines": 142, + "truncated": false, + "block": 1, + "row": 235 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/src/poller.h", + "sha256": "8d870a12a3fd47120fc5d44b76827394c1d0560b211cee7555eaaa633e5c514d", + "language": "C/C++", + "lines": 34, + "truncated": false, + "block": 1, + "row": 308 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/src/serialport.cpp", + "sha256": "4d7f711bddb3c0138f19d39e942d5b3435f3fd758bdda45c7c6badcf871f9c58", + "language": "C++", + "lines": 486, + "truncated": false, + "block": 1, + "row": 271 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/src/serialport.h", + "sha256": "93cfc8662062c589a41ff2752ade93155e7ccd367501f11526fb4590a9086e00", + "language": "C/C++", + "lines": 140, + "truncated": false, + "block": 1, + "row": 391 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/src/serialport_linux.cpp", + "sha256": "8942c6a050d415f464cc69a24c98c8fc113696ef0798031631b896aea9a6a9dd", + "language": "C++", + "lines": 60, + "truncated": false, + "block": 1, + "row": 213 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/src/serialport_linux.h", + "sha256": "9560999d6e88aac789656a92b6ac6d0e3d9a56fe6c351541e75142fb01657f37", + "language": "C/C++", + "lines": 9, + "truncated": false, + "block": 1, + "row": 292 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/src/serialport_unix.cpp", + "sha256": "276cda9739354b0294b9190a56f5a3b8d1ea35ed69fa198eb5b0d6d970d68d70", + "language": "C++", + "lines": 421, + "truncated": false, + "block": 1, + "row": 268 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/src/serialport_unix.h", + "sha256": "6274adf5ce1c944f3e5826419659c6e90bb1d6e74b896498b23ccba0d87402ce", + "language": "C/C++", + "lines": 7, + "truncated": false, + "block": 1, + "row": 289 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/src/serialport_win.cpp", + "sha256": "009a904e518778a392adf6201b9fbd9efca855e0c1f9cb2674351e85f856a53a", + "language": "C++", + "lines": 953, + "truncated": false, + "block": 1, + "row": 285 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/bindings/src/serialport_win.h", + "sha256": "79a69af9ac9128cf0b10e50813dc6ce1d2a86c32cb6e5ecf88298995569e619e", + "language": "C/C++", + "lines": 74, + "truncated": false, + "block": 1, + "row": 350 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/parser-byte-length/lib/index.js", + "sha256": "aa1abbd2d1f8f96922fe20b7f46a0209fd8a34f7f78b22380dbbbd89f5d02c5c", + "language": "JavaScript", + "lines": 55, + "truncated": false, + "block": 1, + "row": 986 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/parser-cctalk/lib/index.js", + "sha256": "6f1bacc8b7264ac68f2c323f1b3207113739cacb0b1ad583c7ceb75c98bd5f25", + "language": "JavaScript", + "lines": 52, + "truncated": false, + "block": 1, + "row": 994 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/parser-delimiter/lib/index.js", + "sha256": "e45d312347f020d99c6166b254bb22c278627bc651224257525bbe3bce86680e", + "language": "JavaScript", + "lines": 49, + "truncated": false, + "block": 1, + "row": 984 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/parser-inter-byte-timeout/lib/index.js", + "sha256": "42e9896c6f5de926d13a2624387fbe2639aabbe420f6d31d1361c01d72c169d7", + "language": "JavaScript", + "lines": 71, + "truncated": false, + "block": 1, + "row": 1111 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/parser-readline/lib/index.js", + "sha256": "712d3e9d03d2a54ab1f3ffd11f89307cd907f2f2c560bf1bcd434a247770f700", + "language": "JavaScript", + "lines": 30, + "truncated": false, + "block": 1, + "row": 848 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/parser-ready/lib/index.js", + "sha256": "5f5e9821ceb587b7f8a12deaade4f64e236a5b557bda921389a2c34b0377deb1", + "language": "JavaScript", + "lines": 63, + "truncated": false, + "block": 1, + "row": 1055 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/parser-regex/lib/index.js", + "sha256": "e1ffb95e6ca3897434f540205a0cef48e01ceafb5940eed06df816bd8e4b483d", + "language": "JavaScript", + "lines": 53, + "truncated": false, + "block": 1, + "row": 948 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/stream/lib/index.js", + "sha256": "8f7e1efc9c410f19b6a130d11c28a1e3e121b32fb54006d72586ea9a6b24ee55", + "language": "JavaScript", + "lines": 656, + "truncated": false, + "block": 1, + "row": 1502 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/stream/node_modules/debug/src/browser.js", + "sha256": "4e3dc6d0e1db58a0d74206b443f35582d3b717be56a0f6d030c34af6c2ad9f62", + "language": "JavaScript", + "lines": 269, + "truncated": false, + "block": 1, + "row": 1329 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/stream/node_modules/debug/src/common.js", + "sha256": "ae6855e9f5ef6687aa8f76e69dd1854f1b99985146434daff310150083cfde02", + "language": "JavaScript", + "lines": 261, + "truncated": false, + "block": 1, + "row": 1332 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/stream/node_modules/debug/src/index.js", + "sha256": "aa127ff1752b7d9c7415c5c7bb6994d9aa722b81bcbcab4bd48316b013d23bf3", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 616 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/stream/node_modules/debug/src/node.js", + "sha256": "f237adcb52849de7c128f57e0468b52353c529a6c8341810477c0e7144359559", + "language": "JavaScript", + "lines": 263, + "truncated": false, + "block": 1, + "row": 1283 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@serialport/stream/node_modules/ms/index.js", + "sha256": "55986972f5f3c9446f876c576e1cd30fd4f04cd26527efbb5ad834637c740e4c", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1169 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@sindresorhus/is/dist/index.d.ts", + "sha256": "f154e143317f34fb04b99727bdbf2eada6f387341fb668628f8fb50eae63a031", + "language": "TypeScript", + "lines": 132, + "truncated": false, + "block": 1, + "row": 12143 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@sindresorhus/is/dist/index.js", + "sha256": "3cf0579a4ffc2209c21730893678f961f91991d0049ac8b907ae6d71769eee1a", + "language": "JavaScript", + "lines": 245, + "truncated": false, + "block": 1, + "row": 1438 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@szmarczak/http-timer/source/index.js", + "sha256": "2b4f186d8d173646f228bbb368ce2aec00398bb7038be1d5aeefa869863f6544", + "language": "JavaScript", + "lines": 99, + "truncated": false, + "block": 1, + "row": 1067 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/component-emitter/index.d.ts", + "sha256": "a3a88c1869ba1022dfaefac47ff7a984ec62510e9b4d60988f91d5e523266c34", + "language": "TypeScript", + "lines": 22, + "truncated": false, + "block": 1, + "row": 12047 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/cookie/index.d.ts", + "sha256": "405ad6db8aa3d5618c3be21cde8125de28a3e40690eb05136c123f420c05c082", + "language": "TypeScript", + "lines": 135, + "truncated": false, + "block": 1, + "row": 12147 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/cors/index.d.ts", + "sha256": "a68969f643e0cb091046a9437b64cb1880a081fc07c70a4717b0edef2a38bc85", + "language": "TypeScript", + "lines": 58, + "truncated": false, + "block": 1, + "row": 12087 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/assert.d.ts", + "sha256": "19d580a3b42ad5caeaee266ae958260e23f2df0549ee201c886c8bd7a4f01d4e", + "language": "TypeScript", + "lines": 129, + "truncated": false, + "block": 1, + "row": 12139 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/async_hooks.d.ts", + "sha256": "7698983d080f951eaf53ff81e5c7bd61abc02e4a1a21266f1bd79ea85c0dc641", + "language": "TypeScript", + "lines": 233, + "truncated": false, + "block": 1, + "row": 12161 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/base.d.ts", + "sha256": "e61a21e9418f279bc480394a94d1581b2dee73747adcbdef999b6737e34d721b", + "language": "TypeScript", + "lines": 19, + "truncated": false, + "block": 1, + "row": 12062 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/buffer.d.ts", + "sha256": "5726b5ce952dc5beaeb08d5f64236632501568a54a390363d2339ba1dc5393b1", + "language": "TypeScript", + "lines": 26, + "truncated": false, + "block": 1, + "row": 12051 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/child_process.d.ts", + "sha256": "89a3409a743c2a408d02bd68255a61d8416225b76c2c66d8e2e74dad3e00bc5d", + "language": "TypeScript", + "lines": 513, + "truncated": false, + "block": 1, + "row": 12189 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/cluster.d.ts", + "sha256": "714637d594e1a38a075091fe464ca91c6abc0b154784b4287f6883200e28ccef", + "language": "TypeScript", + "lines": 266, + "truncated": false, + "block": 1, + "row": 12175 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/console.d.ts", + "sha256": "23edba5f47d3409810c563fe8034ae2c59e718e1ef8570f4152ccdde1915a096", + "language": "TypeScript", + "lines": 137, + "truncated": false, + "block": 1, + "row": 12140 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/constants.d.ts", + "sha256": "0e9c55f894ca2d9cf63b5b0d43a8cec1772dd560233fd16275bc7a485eb82f83", + "language": "TypeScript", + "lines": 19, + "truncated": false, + "block": 1, + "row": 12046 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/crypto.d.ts", + "sha256": "64813a6beff756b9e3f3c06d1b648d55e7c90af2b55c64d13a69d6c7f573643d", + "language": "TypeScript", + "lines": 1176, + "truncated": false, + "block": 1, + "row": 12195 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/dgram.d.ts", + "sha256": "5f0a09de75bd965c21dc6d73671ba88830272f9ed62897bb0aa9754b369b1eed", + "language": "TypeScript", + "lines": 145, + "truncated": false, + "block": 1, + "row": 12152 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/dns.d.ts", + "sha256": "2b34e7fcba9e1f24e7f54ba5c8be5a8895b0b8b444ccf6548e04acdee0899317", + "language": "TypeScript", + "lines": 384, + "truncated": false, + "block": 1, + "row": 12176 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/domain.d.ts", + "sha256": "06d2be99c3dd2ff52114d02ee443ba486ab482423df1941d3c97d6a92e924d70", + "language": "TypeScript", + "lines": 28, + "truncated": false, + "block": 1, + "row": 12055 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/events.d.ts", + "sha256": "bfd4f140c07091b5e8a963c89e6fa3f44b6cfcbc11471b465cf63e2d020ad0eb", + "language": "TypeScript", + "lines": 83, + "truncated": false, + "block": 1, + "row": 12120 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/fs.d.ts", + "sha256": "a106a0bea088b70879ac88ff606dc253c0cc474ea05ad3a282b8bfb1091ae576", + "language": "TypeScript", + "lines": 2262, + "truncated": false, + "block": 1, + "row": 12201 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/fs/promises.d.ts", + "sha256": "c98ce957db9eebd75f53edda3f6893e05ab2d2283b5667b18e31bcdb6427ed10", + "language": "TypeScript", + "lines": 561, + "truncated": false, + "block": 1, + "row": 12191 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/globals.d.ts", + "sha256": "e9a43c3ee6fb8376bb9a4d318a660412c6abcfe5161c106e801e5431b41b7476", + "language": "TypeScript", + "lines": 614, + "truncated": false, + "block": 1, + "row": 12186 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/globals.global.d.ts", + "sha256": "2708349d5a11a5c2e5f3a0765259ebe7ee00cdcc8161cb9990cb4910328442a1", + "language": "TypeScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 12004 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/http.d.ts", + "sha256": "1f08bd8305d4a789a68f71ab622156dfff993aa51a2aa58b9ccf166cc6f9fcf7", + "language": "TypeScript", + "lines": 427, + "truncated": false, + "block": 1, + "row": 12178 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/http2.d.ts", + "sha256": "4c260129d649d69f0608cd123e7016e61364b553a5ca2de9b66b0398594959cf", + "language": "TypeScript", + "lines": 962, + "truncated": false, + "block": 1, + "row": 12197 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/https.d.ts", + "sha256": "1978992206803f5761e99e893d93b25abc818c5fe619674fdf2ae02b29f641ba", + "language": "TypeScript", + "lines": 40, + "truncated": false, + "block": 1, + "row": 12089 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/index.d.ts", + "sha256": "9c4c395e927045b324877acdc4bfb95f128f36bc9f073266a2f0342495075a4f", + "language": "TypeScript", + "lines": 59, + "truncated": false, + "block": 1, + "row": 12122 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/inspector.d.ts", + "sha256": "05fbe81f09fc455a2c343d2458d2b3c600c90b92b22926be765ee79326be9466", + "language": "TypeScript", + "lines": 3048, + "truncated": false, + "block": 1, + "row": 12202 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/module.d.ts", + "sha256": "8e7d6dae9e19bbe47600dcfd4418db85b30ae7351474ea0aad5e628f9845d340", + "language": "TypeScript", + "lines": 57, + "truncated": false, + "block": 1, + "row": 12091 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/net.d.ts", + "sha256": "f20ea392f7f27feb7a90e5a24319a4e365b07bf83c39a547711fe7ff9df68657", + "language": "TypeScript", + "lines": 289, + "truncated": false, + "block": 1, + "row": 12171 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/os.d.ts", + "sha256": "32542c4660ecda892a333a533feedba31738ee538ef6a78eb73af647137bc3fc", + "language": "TypeScript", + "lines": 243, + "truncated": false, + "block": 1, + "row": 12156 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/path.d.ts", + "sha256": "0ecacea5047d1a7d350e7049dbd22f26435be5e8736a81a56afec5b3264db1ca", + "language": "TypeScript", + "lines": 158, + "truncated": false, + "block": 1, + "row": 12149 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/perf_hooks.d.ts", + "sha256": "ffcb4ebde21f83370ed402583888b28651d2eb7f05bfec9482eb46d82adedd7f", + "language": "TypeScript", + "lines": 275, + "truncated": false, + "block": 1, + "row": 12165 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/process.d.ts", + "sha256": "06c004006016a51c4d1855527a523562c329dc44c473931c65f10373281f730e", + "language": "TypeScript", + "lines": 412, + "truncated": false, + "block": 1, + "row": 12181 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/punycode.d.ts", + "sha256": "a7b43c69f9602d198825e403ee34e5d64f83c48b391b2897e8c0e6f72bca35f8", + "language": "TypeScript", + "lines": 86, + "truncated": false, + "block": 1, + "row": 12125 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/querystring.d.ts", + "sha256": "f4a3fc4efc6944e7b7bd4ccfa45e0df68b6359808e6cf9d061f04fd964a7b2d3", + "language": "TypeScript", + "lines": 32, + "truncated": false, + "block": 1, + "row": 12072 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/readline.d.ts", + "sha256": "73cad675aead7a2c05cf934e7e700c61d84b2037ac1d576c3f751199b25331da", + "language": "TypeScript", + "lines": 174, + "truncated": false, + "block": 1, + "row": 12153 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/repl.d.ts", + "sha256": "8c3137ba3583ec18484429ec1c8eff89efdc42730542f157b38b102fdccc0c71", + "language": "TypeScript", + "lines": 399, + "truncated": false, + "block": 1, + "row": 12177 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/stream.d.ts", + "sha256": "d84300d886b45a198c346158e4ff7ae361cc7bc1c3deab44afb3db7de56b5d25", + "language": "TypeScript", + "lines": 359, + "truncated": false, + "block": 1, + "row": 12180 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/string_decoder.d.ts", + "sha256": "94ca7beec4e274d32362b54e0133152f7b4be9487db7b005070c03880b6363aa", + "language": "TypeScript", + "lines": 11, + "truncated": false, + "block": 1, + "row": 12015 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/timers.d.ts", + "sha256": "2d713cbcbd5bcc38d91546eaeea7bb1c8686dc4a2995a28556d957b1b9de11d9", + "language": "TypeScript", + "lines": 20, + "truncated": false, + "block": 1, + "row": 12061 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/tls.d.ts", + "sha256": "bbf21f210782db4193359010a4710786add43e3b50aa42fc0d371f45b4e4d8d3", + "language": "TypeScript", + "lines": 783, + "truncated": false, + "block": 1, + "row": 12192 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/trace_events.d.ts", + "sha256": "0b7733d83619ac4e3963e2a9f7c75dc1e9af6850cb2354c9554977813092c10a", + "language": "TypeScript", + "lines": 65, + "truncated": false, + "block": 1, + "row": 12098 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/ts3.4/assert.d.ts", + "sha256": "1aa743b5b89d2f3c7eff2c20661d119623e4dbfa33f992a16583f16af7b70c75", + "language": "TypeScript", + "lines": 103, + "truncated": false, + "block": 1, + "row": 12133 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/ts3.4/base.d.ts", + "sha256": "d44028ae0127eb3e9fcfa5f55a8b81d64775ce15aca1020fe25c511bbb055834", + "language": "TypeScript", + "lines": 56, + "truncated": false, + "block": 1, + "row": 12104 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/ts3.4/globals.global.d.ts", + "sha256": "01fe161d6381a568747291bbd64e369438dae0dbaa46082332b26568f66bce1d", + "language": "TypeScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 12003 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/ts3.4/index.d.ts", + "sha256": "086a4b923b83ae4e7c4209512ac24c2d0493f3062181f606a05002300783945b", + "language": "TypeScript", + "lines": 8, + "truncated": false, + "block": 1, + "row": 12033 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/ts3.6/base.d.ts", + "sha256": "ad1ae5ae98eceb9af99061e83e867b9897d267aebc8f3b938c9424deabadf4bb", + "language": "TypeScript", + "lines": 22, + "truncated": false, + "block": 1, + "row": 12066 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/ts3.6/index.d.ts", + "sha256": "01d67b125ccace2a6159346a4894f7d0e1f270bd5a25ec0cb1326817c2ac7aa5", + "language": "TypeScript", + "lines": 7, + "truncated": false, + "block": 1, + "row": 12019 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/tty.d.ts", + "sha256": "3ce933f0c3955f67f67eb7d6b5c83c2c54a18472c1d6f2bb651e51dd40c84837", + "language": "TypeScript", + "lines": 70, + "truncated": false, + "block": 1, + "row": 12106 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/url.d.ts", + "sha256": "631e96db896d645f7132c488ad34a16d71fd2be9f44696f8c98289ee1c8cbfa9", + "language": "TypeScript", + "lines": 120, + "truncated": false, + "block": 1, + "row": 12129 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/util.d.ts", + "sha256": "2c77230d381cba81eb6f87cda2fbfff6c0427c6546c2e2590110effff37c58f7", + "language": "TypeScript", + "lines": 211, + "truncated": false, + "block": 1, + "row": 12170 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/v8.d.ts", + "sha256": "da86ee9a2f09a4583db1d5e37815894967e1f694ad9f3c25e84e0e4d40411e14", + "language": "TypeScript", + "lines": 191, + "truncated": false, + "block": 1, + "row": 12150 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/vm.d.ts", + "sha256": "66679e8ffbf1fddef1796c60757e54e6e6551dd9823f75ef2f80176473bdaaff", + "language": "TypeScript", + "lines": 152, + "truncated": false, + "block": 1, + "row": 12142 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/wasi.d.ts", + "sha256": "780058f4a804c8bdcdd2f60e7af64b2bc57d149c1586ee3db732a84d659a50bf", + "language": "TypeScript", + "lines": 90, + "truncated": false, + "block": 1, + "row": 12119 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/worker_threads.d.ts", + "sha256": "ddc086b1adac44e2fccf55422da1e90fa970e659d77f99712422a421564b4877", + "language": "TypeScript", + "lines": 242, + "truncated": false, + "block": 1, + "row": 12166 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/@types/node/zlib.d.ts", + "sha256": "515ef1d99036ff0dafa5bf738e02222edea94e0d97a0aa0ff277ac5e96b57977", + "language": "TypeScript", + "lines": 365, + "truncated": false, + "block": 1, + "row": 12173 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/abbrev/abbrev.js", + "sha256": "77e68ed8bb552a11a5ece29800e0afe34bcc098d14a1b88dd44273f68be43943", + "language": "JavaScript", + "lines": 61, + "truncated": false, + "block": 1, + "row": 1021 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/accepts/index.js", + "sha256": "be2decbd50610e8f995c1e312ee4dd6d7c1244cfdf03ee4c4a3da68e572dada1", + "language": "JavaScript", + "lines": 238, + "truncated": false, + "block": 1, + "row": 1303 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ansi-align/index.js", + "sha256": "7ae5f0bc4adc2af51c13aacd17e28ef6bfdd276721c08e3b5c16e32f893df01b", + "language": "JavaScript", + "lines": 61, + "truncated": false, + "block": 1, + "row": 949 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ansi-align/node_modules/string-width/index.js", + "sha256": "85747e89f4c8eecc82130834c3fade5dcb1ead57c3ed779088bb3f9bd7af0262", + "language": "JavaScript", + "lines": 39, + "truncated": false, + "block": 1, + "row": 750 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ansi-regex/index.js", + "sha256": "b03490694d3582453bf41972298bd018f39886a72d895db6d5f98ee057462c62", + "language": "JavaScript", + "lines": 14, + "truncated": false, + "block": 1, + "row": 639 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ansi-styles/index.d.ts", + "sha256": "6b5a49a699ffbccce553dead6c39d3b10a896f78869ef5507d30dfcdbf6f0977", + "language": "TypeScript", + "lines": 345, + "truncated": false, + "block": 1, + "row": 12148 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ansi-styles/index.js", + "sha256": "d3f197d370760ddd8753c1355b4bdb585a787f1baa92bb8ed217f170c138b594", + "language": "JavaScript", + "lines": 163, + "truncated": false, + "block": 1, + "row": 1244 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/anymatch/index.d.ts", + "sha256": "4fb0b7d532aa6fb850b6cd2f1ee4f00802d877b5c66a51903bc1fb0624126349", + "language": "TypeScript", + "lines": 19, + "truncated": false, + "block": 1, + "row": 12042 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/anymatch/index.js", + "sha256": "b657f52bc7376109592a06fa711b91b05ddd35c1f7eb69c4d1f996b177418085", + "language": "JavaScript", + "lines": 102, + "truncated": false, + "block": 1, + "row": 1175 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/aproba/index.js", + "sha256": "df0dbeaddd66465687a5b4c4ec28bdade1343e416cabefce7048565584571a2a", + "language": "JavaScript", + "lines": 105, + "truncated": false, + "block": 1, + "row": 1234 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/are-we-there-yet/index.js", + "sha256": "7a427679a9b245f02d66bb09aeaa5337bdff29375d05f3f34e7133b61001bb69", + "language": "JavaScript", + "lines": 4, + "truncated": false, + "block": 1, + "row": 569 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/are-we-there-yet/tracker-base.js", + "sha256": "733f287bde0281daa16a3ee8e006266c37d7aa81a5750c2e2379535fea265977", + "language": "JavaScript", + "lines": 11, + "truncated": false, + "block": 1, + "row": 601 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/are-we-there-yet/tracker-group.js", + "sha256": "beeef4c39fb6b32f2c5b2ef59e9cf09de45d3c2516299d0ed811654a6b1aeb32", + "language": "JavaScript", + "lines": 107, + "truncated": false, + "block": 1, + "row": 1189 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/are-we-there-yet/tracker-stream.js", + "sha256": "e550b2d2ee5720b7b140a73b625d1cef6550152b1edbd7264488c3bd54611b6f", + "language": "JavaScript", + "lines": 36, + "truncated": false, + "block": 1, + "row": 850 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/are-we-there-yet/tracker.js", + "sha256": "10abe0873555228627d7a4098aa104cb94fc609fc237c2061d6c25011dab0117", + "language": "JavaScript", + "lines": 30, + "truncated": false, + "block": 1, + "row": 789 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/array-flatten/array-flatten.js", + "sha256": "766ca145b6d25e3d60f352a716e8fa1876bcdf362c0767c360cf24f335bc281e", + "language": "JavaScript", + "lines": 64, + "truncated": false, + "block": 1, + "row": 919 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/balanced-match/index.js", + "sha256": "5c3415fe87961cffc503e9a1d74fe2cd4c0c2ec57b7ea4fef0a4b663f53e52b4", + "language": "JavaScript", + "lines": 59, + "truncated": false, + "block": 1, + "row": 909 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/base64-arraybuffer/lib/base64-arraybuffer.js", + "sha256": "756e9c9e4b63048c99e9bbfdbd1a76ce5ad3193cecf94a4232ced8fdf1732607", + "language": "JavaScript", + "lines": 59, + "truncated": false, + "block": 1, + "row": 1006 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/base64-js/base64js.min.js", + "sha256": "d2e82495607abf54f16e21de04d90ba9ce1605451667d88425babece988f148b", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 1088 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/base64-js/index.d.ts", + "sha256": "96da6c81cd788939a7cf6546ea1f65ab5ca38952e5bd7d8c284bfe1f3c22dce7", + "language": "TypeScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 12012 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/base64-js/index.js", + "sha256": "829eadd8a1a441d25be0cb93b00e16a0d0c20fd294db95d8f2ed87e6954b7182", + "language": "JavaScript", + "lines": 150, + "truncated": false, + "block": 1, + "row": 1232 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/base64id/lib/base64id.js", + "sha256": "b22f3bccc756717cccf3841102c662960ec5831c3600c7a8d8c2d8ceade168fa", + "language": "JavaScript", + "lines": 103, + "truncated": false, + "block": 1, + "row": 1106 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/binary-extensions/binary-extensions.json.d.ts", + "sha256": "3cddc44591c4415fb806ab7cc510c2377c60ef3a31a6d09db460fd42b4c6460d", + "language": "TypeScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 12008 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/binary-extensions/index.d.ts", + "sha256": "694689efa957c0ce6a486504150b441b958e0ecd08b0264ba6d74f1a386cf56e", + "language": "TypeScript", + "lines": 14, + "truncated": false, + "block": 1, + "row": 12014 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/binary-extensions/index.js", + "sha256": "5b2859ec9677f14e6499b135b2e05a083fd2a1afce18175ac0658bc9d4c49774", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 527 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bindings/bindings.js", + "sha256": "8e32a0d37f20bd6f7d5bdbf99d041aa27be47cbbe5172ac13ebf7380a10b3bf6", + "language": "JavaScript", + "lines": 221, + "truncated": false, + "block": 1, + "row": 1327 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/BufferList.js", + "sha256": "cb21ad5d2dd255e2195460ecd5a0bdd65cff0adee2a9fd6c860951c22c9fd4b8", + "language": "JavaScript", + "lines": 396, + "truncated": false, + "block": 1, + "row": 1425 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/bl.js", + "sha256": "71e59aeed4af10ad4268bb35e4c51fe89c640ea9a3f1a9cb597594b02376e249", + "language": "JavaScript", + "lines": 84, + "truncated": false, + "block": 1, + "row": 1058 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/node_modules/inherits/inherits.js", + "sha256": "bb380f32bef5feb18678f0f45f88073fed5d7a0069a309132cb2080cd553d5c7", + "language": "JavaScript", + "lines": 9, + "truncated": false, + "block": 1, + "row": 588 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/node_modules/inherits/inherits_browser.js", + "sha256": "ad322a7b1dec60f3d2ebda2091816469efb55b567d241cf3cf0fa4c5a4afe500", + "language": "JavaScript", + "lines": 27, + "truncated": false, + "block": 1, + "row": 751 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/node_modules/readable-stream/errors-browser.js", + "sha256": "346033597378d23e59068d120d6257f7cd85ae88c40b1f85c3329cece0d119c4", + "language": "JavaScript", + "lines": 127, + "truncated": false, + "block": 1, + "row": 1249 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/node_modules/readable-stream/errors.js", + "sha256": "7028cca95b2f124345bd5b816e0d8184e7b7d208fe0aa76eb38df43e8644fd03", + "language": "JavaScript", + "lines": 116, + "truncated": false, + "block": 1, + "row": 1223 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/node_modules/readable-stream/experimentalWarning.js", + "sha256": "5f9beff594347ba6765b806ec36e25699be1407627e2ee91be5d609e40baacb8", + "language": "JavaScript", + "lines": 17, + "truncated": false, + "block": 1, + "row": 689 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/node_modules/readable-stream/lib/_stream_duplex.js", + "sha256": "c3d976062b770b4a88c91d244557bbe9a828b55dc2de1f9ac85c2d5e909389c4", + "language": "JavaScript", + "lines": 139, + "truncated": false, + "block": 1, + "row": 1265 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/node_modules/readable-stream/lib/_stream_passthrough.js", + "sha256": "14475641ec1d85dcbf95e2555fedb04bf02f8482e08822a5a09b01ddc6389f5f", + "language": "JavaScript", + "lines": 39, + "truncated": false, + "block": 1, + "row": 996 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/node_modules/readable-stream/lib/_stream_readable.js", + "sha256": "c8d010d85186209997a60b3cf1b653a77a88490a3e11e015c2b5eb2d56c30fe7", + "language": "JavaScript", + "lines": 1124, + "truncated": false, + "block": 1, + "row": 1522 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/node_modules/readable-stream/lib/_stream_transform.js", + "sha256": "d85bb2b8c6ba3cf71e6ae759342df89dee95981c6856e9f4dc0b85d70cf60b59", + "language": "JavaScript", + "lines": 201, + "truncated": false, + "block": 1, + "row": 1388 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/node_modules/readable-stream/lib/_stream_writable.js", + "sha256": "e97dc3728c1ba71414f84cb44cb4c4ecefdf0fdd1c3242a5f447e08ed20cca6f", + "language": "JavaScript", + "lines": 697, + "truncated": false, + "block": 1, + "row": 1496 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/node_modules/readable-stream/lib/internal/streams/async_iterator.js", + "sha256": "3a752f2fcb0de353265f2d4928126183b5a08d9c9eb6aa4fab74808286e69844", + "language": "JavaScript", + "lines": 207, + "truncated": false, + "block": 1, + "row": 1324 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/node_modules/readable-stream/lib/internal/streams/buffer_list.js", + "sha256": "10f06e02f00b1e4c28afd01cd4b1ecf280c75c59e97fb8611ac014bdd614d2ad", + "language": "JavaScript", + "lines": 210, + "truncated": false, + "block": 1, + "row": 1344 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/node_modules/readable-stream/lib/internal/streams/destroy.js", + "sha256": "54c7b9c8319baeffa83840ae559b5910f530bdca530292d9be190236f219a7b3", + "language": "JavaScript", + "lines": 105, + "truncated": false, + "block": 1, + "row": 1182 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/node_modules/readable-stream/lib/internal/streams/end-of-stream.js", + "sha256": "75da6b5b0634012017a6252c6e130335de7775e5a02f10817d02af47afa8bb8d", + "language": "JavaScript", + "lines": 104, + "truncated": false, + "block": 1, + "row": 1179 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/node_modules/readable-stream/lib/internal/streams/from-browser.js", + "sha256": "4b4404c7bd6f66a2175cb7a29c60ce4395c055775ec45eaa35af4357656f604f", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 548 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/node_modules/readable-stream/lib/internal/streams/from.js", + "sha256": "9c67e32e4f371b72c83265a077c7e317866170134ff8dca4cc24313c5037426b", + "language": "JavaScript", + "lines": 64, + "truncated": false, + "block": 1, + "row": 1184 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/node_modules/readable-stream/lib/internal/streams/pipeline.js", + "sha256": "16576b2011c78d0c5ceccdeba7451e83e1bd86f2c3f31c05de7df4ccfb149c2a", + "language": "JavaScript", + "lines": 97, + "truncated": false, + "block": 1, + "row": 1113 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/node_modules/readable-stream/lib/internal/streams/state.js", + "sha256": "cdbed99634b523be655225df1547cd00295e3041cb02848c652ddad5e6787e49", + "language": "JavaScript", + "lines": 27, + "truncated": false, + "block": 1, + "row": 749 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/node_modules/readable-stream/lib/internal/streams/stream-browser.js", + "sha256": "72d46a15491627d8fb1489a47d03583cfe5c21902918016ab532b53e615e5a9a", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 524 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/node_modules/readable-stream/lib/internal/streams/stream.js", + "sha256": "1e7903927df33aadb3659ecce55266c9c851da65ce6c8b723a60a305c1c5422c", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 516 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/node_modules/readable-stream/readable-browser.js", + "sha256": "c4ff3ea62ef65a2c68ea721dcbd58b621150660facd02be95ebfc556c4dd123f", + "language": "JavaScript", + "lines": 9, + "truncated": false, + "block": 1, + "row": 692 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/node_modules/readable-stream/readable.js", + "sha256": "2944f1d3c8c5d5c5e07e7c30d6cbef5fc37440b7c73de47aeb37fa8424f04bf1", + "language": "JavaScript", + "lines": 16, + "truncated": false, + "block": 1, + "row": 745 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/test/convert.js", + "sha256": "8f53ff4881443e25976313de40c5974e984016f364d0cac1c71425b13b000090", + "language": "JavaScript", + "lines": 21, + "truncated": false, + "block": 1, + "row": 716 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/test/indexOf.js", + "sha256": "3213bfac8bfd094eb2425ad0df60b51fa6d16151ccd00d031d21071cb8bff747", + "language": "JavaScript", + "lines": 492, + "truncated": false, + "block": 1, + "row": 1462 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/test/isBufferList.js", + "sha256": "d099739e2a6083f31a2295ff08ca074e74e7352d3ceb694661da453e45f917ec", + "language": "JavaScript", + "lines": 32, + "truncated": false, + "block": 1, + "row": 702 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bl/test/test.js", + "sha256": "6388b88ff64c549bc1fd4c564d719ea2cf8c5920095f450b082c36d4ec5cb3a9", + "language": "JavaScript", + "lines": 869, + "truncated": false, + "block": 1, + "row": 1493 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/body-parser/index.js", + "sha256": "d584d690e2a5ffa3b9e7f13db3939a344d34f7ca38dc09b45af7c2fa7fe454e4", + "language": "JavaScript", + "lines": 157, + "truncated": false, + "block": 1, + "row": 1143 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/body-parser/lib/read.js", + "sha256": "61a96c9ad70f888cf3cdcb511118d150447ea3f14f7b7ba776a0e1cd70084dd7", + "language": "JavaScript", + "lines": 181, + "truncated": false, + "block": 1, + "row": 1231 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/body-parser/lib/types/json.js", + "sha256": "a34efbd3438dcd0a0060b4bda8ea75acaec3ae2b1a49460e25af950d15562276", + "language": "JavaScript", + "lines": 230, + "truncated": false, + "block": 1, + "row": 1290 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/body-parser/lib/types/raw.js", + "sha256": "4e9cc80a7ee8bd667c68c264b4c374b28e731246ddb6ec22c3968daf837e30a2", + "language": "JavaScript", + "lines": 101, + "truncated": false, + "block": 1, + "row": 1037 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/body-parser/lib/types/text.js", + "sha256": "54a6e8ef720b06a300b21f6c60387805dec743a64154784a609dfe8c6860776a", + "language": "JavaScript", + "lines": 121, + "truncated": false, + "block": 1, + "row": 1097 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/body-parser/lib/types/urlencoded.js", + "sha256": "752717d87aad57451638af2073b04eba964f348910c0bcf0070c43e732de5eb2", + "language": "JavaScript", + "lines": 284, + "truncated": false, + "block": 1, + "row": 1317 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/boxen/index.d.ts", + "sha256": "0797b889b745051d706c17212d86e28c9e150e89597ab5a16f81bbb8af1367c8", + "language": "TypeScript", + "lines": 175, + "truncated": false, + "block": 1, + "row": 12115 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/boxen/index.js", + "sha256": "c294cbd99cf5db146da186e3a5022ad40e29895fed4766f5998c85d1870de0b5", + "language": "JavaScript", + "lines": 139, + "truncated": false, + "block": 1, + "row": 1228 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/brace-expansion/index.js", + "sha256": "6bf9eee39229aa68ac3e6a71177c387c8321eff1f83242a35f3e7c35cb9eec1b", + "language": "JavaScript", + "lines": 201, + "truncated": false, + "block": 1, + "row": 1287 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/braces/index.js", + "sha256": "159b0e1f2fbbb1c5b10c63a0685e3360e11060a65ddeaefecadbbb2e548f21e9", + "language": "JavaScript", + "lines": 170, + "truncated": false, + "block": 1, + "row": 1261 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/braces/lib/compile.js", + "sha256": "d72147b24cf6b14dd8964d96e58977a5c965cd8f970fdb9a9d6260493e58b17a", + "language": "JavaScript", + "lines": 57, + "truncated": false, + "block": 1, + "row": 965 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/braces/lib/constants.js", + "sha256": "0115a2da3c26754dbdcb9919faf27f6d96144aa529c7b5182ae39ae3babde2cd", + "language": "JavaScript", + "lines": 57, + "truncated": false, + "block": 1, + "row": 991 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/braces/lib/expand.js", + "sha256": "0735991ea5eea0619bcfdd70d69e96b0232fef7c207e8e6c3036cdabae831311", + "language": "JavaScript", + "lines": 113, + "truncated": false, + "block": 1, + "row": 1159 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/braces/lib/parse.js", + "sha256": "f41661a8339b9d1277c8f19152ed339d0b0774f66ff5228fdd743ff9276e6036", + "language": "JavaScript", + "lines": 333, + "truncated": false, + "block": 1, + "row": 1363 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/braces/lib/stringify.js", + "sha256": "21d97bd38d32451123dc12480de17d063457b71c09d790ce34f3f0b7c51bcd73", + "language": "JavaScript", + "lines": 32, + "truncated": false, + "block": 1, + "row": 739 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/braces/lib/utils.js", + "sha256": "777b6ba3b4a0407ccd87364caf4d203911b558be1de41b09c258b7936ed5d5bb", + "language": "JavaScript", + "lines": 112, + "truncated": false, + "block": 1, + "row": 1115 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/buffer/index.d.ts", + "sha256": "8e9c23ba78aabc2e0a27033f18737a6df754067731e69dc5f52823957d60a4b6", + "language": "TypeScript", + "lines": 186, + "truncated": false, + "block": 1, + "row": 12159 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/buffer/index.js", + "sha256": "9fab6e5f345b42e0ab83cac4c0790d40b77b21ad6af47ace7364f3f6a1f8d8d4", + "language": "JavaScript", + "lines": 1817, + "truncated": false, + "block": 1, + "row": 1535 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/bytes/index.js", + "sha256": "0b09645f3817469ba5d8b7047a54db6dd431586a2c670ea8d8c31c7880f1ef08", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1209 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/cacheable-request/node_modules/get-stream/buffer-stream.js", + "sha256": "74502372f3e457ae4d05546c47b4fd88c8df6ed8eb6166b6feb8bec1798ec6dc", + "language": "JavaScript", + "lines": 52, + "truncated": false, + "block": 1, + "row": 816 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/cacheable-request/node_modules/get-stream/index.d.ts", + "sha256": "60a338c686d0d8ca997ba072e955484008a401bfc4cbe8ccf62a46b03a8a6a50", + "language": "TypeScript", + "lines": 108, + "truncated": false, + "block": 1, + "row": 12124 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/cacheable-request/node_modules/get-stream/index.js", + "sha256": "80626386e94017e8950ab75791da258c1165867e49187ebf8c9f77b3e1da4478", + "language": "JavaScript", + "lines": 60, + "truncated": false, + "block": 1, + "row": 969 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/cacheable-request/node_modules/lowercase-keys/index.d.ts", + "sha256": "a6ce02ea5fe2e197b7a939f8f2d5bd7608ca3989eeeb60bd3df88ee198d4595d", + "language": "TypeScript", + "lines": 16, + "truncated": false, + "block": 1, + "row": 12026 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/cacheable-request/node_modules/lowercase-keys/index.js", + "sha256": "a7b40f46216d06cbe2b183e35a666e8932758d7cd70c66aa403e48dd0b750ee7", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 573 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/cacheable-request/src/index.js", + "sha256": "3ce05ac3531f61529210bf6390f18d5e709ec110e37dee22af7e72b4065ca627", + "language": "JavaScript", + "lines": 251, + "truncated": false, + "block": 1, + "row": 1364 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/camelcase/index.d.ts", + "sha256": "b8e7261f41dd775524077306a69c01796bd5a2a742c7338e6607ff4e689bc356", + "language": "TypeScript", + "lines": 63, + "truncated": false, + "block": 1, + "row": 12074 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/camelcase/index.js", + "sha256": "c335ea757e3898080795f25093827d97b8fb00d0f3ac04dd56c80eecdac8eef3", + "language": "JavaScript", + "lines": 76, + "truncated": false, + "block": 1, + "row": 1068 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/chalk/index.d.ts", + "sha256": "f416820e2e8f33a5e07698bd5f50acf6db29716d98896ec1bf11b483d3ed4c54", + "language": "TypeScript", + "lines": 411, + "truncated": false, + "block": 1, + "row": 12157 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/chalk/node_modules/has-flag/index.d.ts", + "sha256": "1f2e0d7173b86a8a84c9a6acd319b89d48e1411b5024e6eb03dc1551b30f392d", + "language": "TypeScript", + "lines": 39, + "truncated": false, + "block": 1, + "row": 12044 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/chalk/node_modules/has-flag/index.js", + "sha256": "e9e921d4734fee9405bef5886c010c80a8f10fe958e5d71bd5d8eed5e616e78d", + "language": "JavaScript", + "lines": 8, + "truncated": false, + "block": 1, + "row": 627 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/chalk/node_modules/supports-color/browser.js", + "sha256": "03b3defae5a0801f91bc78f5f3ff2b13dec13df4cef4c0a94554b2d1183da1d1", + "language": "JavaScript", + "lines": 5, + "truncated": false, + "block": 1, + "row": 533 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/chalk/node_modules/supports-color/index.js", + "sha256": "479fd04f71a0fed642baa7e57c7e0701ae6f4a450bde8179f96815e6a26752b0", + "language": "JavaScript", + "lines": 135, + "truncated": false, + "block": 1, + "row": 1154 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/chalk/source/index.js", + "sha256": "90fd8fd7e44718392785a45a3937a2874bfb14984e43cb0795ccd67670894b59", + "language": "JavaScript", + "lines": 233, + "truncated": false, + "block": 1, + "row": 1320 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/chalk/source/templates.js", + "sha256": "6bb3e46964e9c4946049ae6e81bff1ccc3757be567b531609f61e77c40bc5693", + "language": "JavaScript", + "lines": 134, + "truncated": false, + "block": 1, + "row": 1200 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/chalk/source/util.js", + "sha256": "9d5cbee8050b580d28fc1de92987ee0237cf609415da8dc781920074f278c016", + "language": "JavaScript", + "lines": 39, + "truncated": false, + "block": 1, + "row": 879 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/chokidar/index.js", + "sha256": "87f2939696de321e5b6c0a90d67701b04a03c70edebdf8ddb2dcc1eee62b128e", + "language": "JavaScript", + "lines": 967, + "truncated": false, + "block": 1, + "row": 1515 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/chokidar/lib/constants.js", + "sha256": "63c1666da3d7b113236c84988868db4da905ef25b92100e8222e6030c20498f6", + "language": "JavaScript", + "lines": 63, + "truncated": false, + "block": 1, + "row": 1023 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/chokidar/lib/fsevents-handler.js", + "sha256": "c2694b3660aa7eb9ac98b0997115c85e7f470a6d397c1676cc304e9fd4367239", + "language": "JavaScript", + "lines": 523, + "truncated": false, + "block": 1, + "row": 1475 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/chokidar/lib/nodefs-handler.js", + "sha256": "e6aad653ff35f0a709f10d01db30109723a1c0880ee4e5dac89f2b11d8e3947a", + "language": "JavaScript", + "lines": 646, + "truncated": false, + "block": 1, + "row": 1485 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/chokidar/types/index.d.ts", + "sha256": "ca7f76d3ea132bde53dca1a0f33cda95397d20c248e452c050773f01504d9802", + "language": "TypeScript", + "lines": 187, + "truncated": false, + "block": 1, + "row": 12146 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/chownr/chownr.js", + "sha256": "529b285703d29b8ab31ead64bd1f64146bac12147cc09ceb4b25f0db87a12c96", + "language": "JavaScript", + "lines": 167, + "truncated": false, + "block": 1, + "row": 1254 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ci-info/index.js", + "sha256": "cba465042558c6b144cc4b3c2f9c6466933f6b8f8ad7ecd25ecfc50ae85e2bcf", + "language": "JavaScript", + "lines": 66, + "truncated": false, + "block": 1, + "row": 1015 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/cli-boxes/index.d.ts", + "sha256": "34739077a773aee172bdace5082c5411e2089b62e586cd097ea55362f1a3b1de", + "language": "TypeScript", + "lines": 113, + "truncated": false, + "block": 1, + "row": 12083 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/cli-boxes/index.js", + "sha256": "c0e356f0851fd141a0e2c1848e44e80ea3d8aea4adbf44c4c6efaeb55f7a52bd", + "language": "JavaScript", + "lines": 6, + "truncated": false, + "block": 1, + "row": 570 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/clone-response/src/index.js", + "sha256": "4e6086dcabe41ca7a48de3c053e0d97eb7f67b92bee566534417b64bbc756499", + "language": "JavaScript", + "lines": 17, + "truncated": false, + "block": 1, + "row": 662 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/code-point-at/index.js", + "sha256": "5754f556e5e9888233cbef45872a7f8b49419527403a4fd5c77b99278b389fcd", + "language": "JavaScript", + "lines": 32, + "truncated": false, + "block": 1, + "row": 717 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/color-convert/conversions.js", + "sha256": "7225058075157fc78115b8be998a2effdfc1e5b3316b004a130ee5f19303574b", + "language": "JavaScript", + "lines": 839, + "truncated": false, + "block": 1, + "row": 1476 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/color-convert/index.js", + "sha256": "adb610f9a2fbba92548161871075262496b563dcd0e5e8f5c20f562160a74b34", + "language": "JavaScript", + "lines": 81, + "truncated": false, + "block": 1, + "row": 1007 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/color-convert/route.js", + "sha256": "5f1420af4a106eaa68ed7b4bb5e46f47e0f251169e38841ec8262447e4691b5d", + "language": "JavaScript", + "lines": 97, + "truncated": false, + "block": 1, + "row": 1093 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/color-name/index.js", + "sha256": "4a2e466dd234a5b75e76f95e6aacd5df9f9818727409804f80ffe18b0907d101", + "language": "JavaScript", + "lines": 152, + "truncated": false, + "block": 1, + "row": 1273 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/component-emitter/index.js", + "sha256": "8e6ad44d4b87d2edd2abbb6cea713a7947a7c43b8cd2f759073d3a5a12d4e6a7", + "language": "JavaScript", + "lines": 175, + "truncated": false, + "block": 1, + "row": 1192 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/concat-map/example/map.js", + "sha256": "ffd5fbdaf966b799cd9d046624be96b48e206920e58ad52d2ed1f2bdd10e93d0", + "language": "JavaScript", + "lines": 6, + "truncated": false, + "block": 1, + "row": 571 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/concat-map/index.js", + "sha256": "091b65d778337599d0140b35d53c038603d1732d27c33bfe39e03871a96926b2", + "language": "JavaScript", + "lines": 13, + "truncated": false, + "block": 1, + "row": 633 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/concat-map/test/map.js", + "sha256": "e2a41fad6a88afcd0958cb9f93217ac2d62670d2a116ab7deb2b790e8f9bc90a", + "language": "JavaScript", + "lines": 39, + "truncated": false, + "block": 1, + "row": 890 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/configstore/index.js", + "sha256": "f73b0646d931f35d290ce242fb9cddb75e5142cbae134a36e89dff4c2e265f14", + "language": "JavaScript", + "lines": 109, + "truncated": false, + "block": 1, + "row": 1117 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/console-control-strings/index.js", + "sha256": "fc557c23f6b2effebc75878c7185424b2dd436df2df137791fdc6816ceec0ff2", + "language": "JavaScript", + "lines": 125, + "truncated": false, + "block": 1, + "row": 1104 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/content-disposition/index.js", + "sha256": "15eb8fd0bc070ec9b43259f4f7df49dc805f1e6837f3c9e547ff0b424c482ded", + "language": "JavaScript", + "lines": 458, + "truncated": false, + "block": 1, + "row": 1435 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/content-type/index.js", + "sha256": "85ffe59d050974725c044a0cead644db76f4bffe823753723670244b90629c5b", + "language": "JavaScript", + "lines": 222, + "truncated": false, + "block": 1, + "row": 1288 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/cookie-signature/index.js", + "sha256": "8d762862020064468b4af17e561ee1ee29d9d55311a1c19d958c4ff2be912963", + "language": "JavaScript", + "lines": 51, + "truncated": false, + "block": 1, + "row": 929 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/cookie/index.js", + "sha256": "7b3aa39bea0be25117f6d08ed828fd04bd10b7f2d556c4cfef51fcfa76be4370", + "language": "JavaScript", + "lines": 198, + "truncated": false, + "block": 1, + "row": 1239 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/core-util-is/lib/util.js", + "sha256": "6916ffc83b502963dd8f619ce457a731cc1730e2aaaf77fa3f8bcbb60345ca9d", + "language": "JavaScript", + "lines": 107, + "truncated": false, + "block": 1, + "row": 1168 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/core-util-is/test.js", + "sha256": "d2e92e044bf229aa38932172f4d0dde5505b6499d013b6c8b9f73d0d3d620d1b", + "language": "JavaScript", + "lines": 68, + "truncated": false, + "block": 1, + "row": 1069 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/cors/lib/index.js", + "sha256": "8d35c93d6ea72eb675038fed47b7d3cb2407e70ea212d6130e7ba55ed8f67df3", + "language": "JavaScript", + "lines": 238, + "truncated": false, + "block": 1, + "row": 1352 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/crypto-random-string/index.d.ts", + "sha256": "cc05314d9cd00cd5801f0d56adaaced4da73d55e928788913ca03c08f57818b1", + "language": "TypeScript", + "lines": 17, + "truncated": false, + "block": 1, + "row": 12034 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/crypto-random-string/index.js", + "sha256": "a6778e0372666eaef21bafabd2ea59c90fc76c3225599d3d372ae1c2f2bc6a2c", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 591 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/debug/karma.conf.js", + "sha256": "2430869adb61a5e24a3612110a9b49a948e6db43ab7e947c003a9c19c478e609", + "language": "JavaScript", + "lines": 70, + "truncated": false, + "block": 1, + "row": 1013 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/debug/node.js", + "sha256": "996b381f353555cb172ebb2802bb2a7323442ff67b7b530cc26834058d7f31a2", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 519 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/debug/src/browser.js", + "sha256": "0144ab6a52b9330c567de11a5c3a4aea35cdac47a4c106482aa24ae8054cdc6f", + "language": "JavaScript", + "lines": 185, + "truncated": false, + "block": 1, + "row": 1286 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/debug/src/debug.js", + "sha256": "d8d1c1d6c387ab67c3f28d78fd0b20b9becd69442db9d3efe110ca464b509c8a", + "language": "JavaScript", + "lines": 202, + "truncated": false, + "block": 1, + "row": 1263 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/debug/src/index.js", + "sha256": "9a34fedeb2d269c46ed94e6f13039eb0d16d866dd460ec66fa3acd78122fa9fe", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 595 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/debug/src/inspector-log.js", + "sha256": "949ae67ec1b655694f83dce57d47d9d77234f9e7d698616932a90e69c7afee91", + "language": "JavaScript", + "lines": 15, + "truncated": false, + "block": 1, + "row": 643 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/debug/src/node.js", + "sha256": "a3e83594a4ce88997e2e4fc66bc942b17b9d736290ad62560c7f09d6d0989ad0", + "language": "JavaScript", + "lines": 248, + "truncated": false, + "block": 1, + "row": 1330 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/decompress-response/index.js", + "sha256": "a5835ffe4e7de6144bca3c41c8b696785664cecaa5e900b95ae28311c5f9fbfd", + "language": "JavaScript", + "lines": 29, + "truncated": false, + "block": 1, + "row": 722 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/deep-extend/index.js", + "sha256": "3589a8446276886aa54f8dda47d0d12be90fb167925559fab4a906ddfca6f91f", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 522 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/deep-extend/lib/deep-extend.js", + "sha256": "87aadac5b3cc8081b570a243c17c575c195c4ae642e98834495291fa626ed9d6", + "language": "JavaScript", + "lines": 150, + "truncated": false, + "block": 1, + "row": 1256 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/defer-to-connect/dist/index.d.ts", + "sha256": "7a7ee35b8303adb02ee3718f938e58afefee66d0a1ddd37b89a920d968ffcd91", + "language": "TypeScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 12024 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/defer-to-connect/dist/index.js", + "sha256": "9229620f1a04026cdf15928468012ae8f681124c1128048f75e499164252dc25", + "language": "JavaScript", + "lines": 45, + "truncated": false, + "block": 1, + "row": 972 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/delegates/index.js", + "sha256": "db3ee6ab2fdabdffc19d5df0cf9461488329379cbb0640eb73203a35197960aa", + "language": "JavaScript", + "lines": 121, + "truncated": false, + "block": 1, + "row": 1060 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/delegates/test/index.js", + "sha256": "36d8a2d16e8138fa52ab1fd35348b8591414edd6ee318dc1871fcb51a932dda4", + "language": "JavaScript", + "lines": 94, + "truncated": false, + "block": 1, + "row": 1025 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/depd/index.js", + "sha256": "244dbbca14b8aa9c9b6be04912283ab704b92f11dcb9b23beb2ba81402fecc99", + "language": "JavaScript", + "lines": 522, + "truncated": false, + "block": 1, + "row": 1436 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/depd/lib/browser/index.js", + "sha256": "10b4d4a4e9d14e9e6a5ab7ced64405ef90e6bec94d479a8e223cbba88828ad79", + "language": "JavaScript", + "lines": 77, + "truncated": false, + "block": 1, + "row": 980 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/depd/lib/compat/callsite-tostring.js", + "sha256": "702ab02dc767bd351fca5f9faa659327f22f4cfd2684e0a33b23447838f5773b", + "language": "JavaScript", + "lines": 103, + "truncated": false, + "block": 1, + "row": 1090 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/depd/lib/compat/event-listener-count.js", + "sha256": "5dc8bef6d7641158ccd485fece7fcf46566fe95b42e40a48ded7ea43366f0968", + "language": "JavaScript", + "lines": 22, + "truncated": false, + "block": 1, + "row": 632 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/depd/lib/compat/index.js", + "sha256": "76baf83317ac81045cefb9fcc8ec0d8e47dd0cfcbadd592f480349412e161861", + "language": "JavaScript", + "lines": 79, + "truncated": false, + "block": 1, + "row": 966 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/destroy/index.js", + "sha256": "9d23fb0d80472356bf635b3e4fc46909914c34c930eafc7b8348d7e3653fcf0c", + "language": "JavaScript", + "lines": 75, + "truncated": false, + "block": 1, + "row": 883 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/detect-libc/bin/detect-libc.js", + "sha256": "99a4f0b6ebe4b213e904a3563973da0b98caba8b7f2877fbbe5084aeadeeb307", + "language": "JavaScript", + "lines": 18, + "truncated": false, + "block": 1, + "row": 642 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/detect-libc/lib/detect-libc.js", + "sha256": "f3d658268111d4ddbc38b1c4cc67bd49ff0418cd7b0110e0ba42b530cdf80dd6", + "language": "JavaScript", + "lines": 92, + "truncated": false, + "block": 1, + "row": 1085 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/dot-prop/index.d.ts", + "sha256": "8b5c247f933ebd3e0e9ba63272e5679d26557d3a094607de9d181f712866c39c", + "language": "TypeScript", + "lines": 101, + "truncated": false, + "block": 1, + "row": 12107 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/dot-prop/index.js", + "sha256": "a3b83aa217410b6441c111014df00092f6e9f6e6fbf26a0aa2414454f4a4055c", + "language": "JavaScript", + "lines": 142, + "truncated": false, + "block": 1, + "row": 1157 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/duplexer3/index.js", + "sha256": "592f25c9660ef60ce803225b15e3da5f5d3b1f5b5a4c516dcfb3ca488e06fc8e", + "language": "JavaScript", + "lines": 76, + "truncated": false, + "block": 1, + "row": 1000 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ee-first/index.js", + "sha256": "29d3cccddc7148f48715bfc94eb6f7b9f9132a5ecb704b9d4b713de87e7603dd", + "language": "JavaScript", + "lines": 95, + "truncated": false, + "block": 1, + "row": 1003 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/emoji-regex/es2015/index.js", + "sha256": "ed2d085cd3fd0d43e559eab9d22118de16f08c863e41c90b922acb555eb7b0f8", + "language": "JavaScript", + "lines": 6, + "truncated": false, + "block": 1, + "row": 1392 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/emoji-regex/es2015/text.js", + "sha256": "12542e6fc4fbde51eda89fb7a1fd6d18a0ab313949220cb6020651ea323e1d2b", + "language": "JavaScript", + "lines": 6, + "truncated": false, + "block": 1, + "row": 1393 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/emoji-regex/index.d.ts", + "sha256": "53da490cb2cb7f9fa4228ca88eb3cdc46e0f4c2394cf5c1607ec00bf906aaf9f", + "language": "TypeScript", + "lines": 5, + "truncated": false, + "block": 1, + "row": 12011 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/emoji-regex/index.js", + "sha256": "b3e5150678165453f96401e87c1032999a5dd16a9c73c2269123c82b7fdf9fb2", + "language": "JavaScript", + "lines": 6, + "truncated": false, + "block": 1, + "row": 1373 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/emoji-regex/text.js", + "sha256": "6b19501c953416f4de375a9485b53c3d8fcc29036140c6fe2ea82db8117b562c", + "language": "JavaScript", + "lines": 6, + "truncated": false, + "block": 1, + "row": 1374 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/encodeurl/index.js", + "sha256": "1d0a4e941c1504dcd9bc6cfbb77f7b44d93e56a29cba6f2ccebd78d501a51c16", + "language": "JavaScript", + "lines": 60, + "truncated": false, + "block": 1, + "row": 990 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/end-of-stream/index.js", + "sha256": "3e912df226ee90ee3edc5ff69cd3e8313fa1da13795e10fb0b0f05727bdabb58", + "language": "JavaScript", + "lines": 94, + "truncated": false, + "block": 1, + "row": 1145 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/engine.io-parser/lib/commons.js", + "sha256": "90e87cd1e95e833ee3ad0026eee6a4ad0cb8e14fe5c240e73a11522c434ef125", + "language": "JavaScript", + "lines": 21, + "truncated": false, + "block": 1, + "row": 701 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/engine.io-parser/lib/decodePacket.browser.js", + "sha256": "7be91bec803ce03bb8605c409818d91e25f740c136d13f2d1eef08b2be4b1333", + "language": "JavaScript", + "lines": 57, + "truncated": false, + "block": 1, + "row": 968 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/engine.io-parser/lib/decodePacket.js", + "sha256": "a6bc1fbcd18c607f6c676a65477c159da95717e75a50588e5c9210aa6dc093ca", + "language": "JavaScript", + "lines": 51, + "truncated": false, + "block": 1, + "row": 940 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/engine.io-parser/lib/encodePacket.browser.js", + "sha256": "7bed43418982b3a0cb58eaaa28bf2a93936cdc51a5701e6d716dc25a943cb62e", + "language": "JavaScript", + "lines": 46, + "truncated": false, + "block": 1, + "row": 957 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/engine.io-parser/lib/encodePacket.js", + "sha256": "5a731b3504b9325bf15f2db502c6a50820cb12d5326bfa0e2506fa65da9d1f9e", + "language": "JavaScript", + "lines": 27, + "truncated": false, + "block": 1, + "row": 786 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/engine.io-parser/lib/index.js", + "sha256": "d51e0c4e6265fa3f70303c44094d0a2c08541096d5087fb885648d55ea6999d8", + "language": "JavaScript", + "lines": 42, + "truncated": false, + "block": 1, + "row": 925 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/engine.io/lib/engine.io.js", + "sha256": "d91490dcfdb322e77be2b9aa64a8c7efe91388ba171e8c9b6711230fe29a3648", + "language": "JavaScript", + "lines": 127, + "truncated": false, + "block": 1, + "row": 1107 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/engine.io/lib/parser-v3/index.js", + "sha256": "44f4410ed268fd3d33a9880e4baab68947c82ce1d40749ab91fb0bc48f58237a", + "language": "JavaScript", + "lines": 483, + "truncated": false, + "block": 1, + "row": 1440 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/engine.io/lib/parser-v3/utf8.js", + "sha256": "fbe7aca6729b24a15b037c3af8677e47eda9cdf39eb8ec22a603154fb5f93b98", + "language": "JavaScript", + "lines": 210, + "truncated": false, + "block": 1, + "row": 1302 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/engine.io/lib/server.js", + "sha256": "9810c6bd3884fffeaeccfd65bb6b3273c03f6639e6b4af97eee68c69b19656e8", + "language": "JavaScript", + "lines": 599, + "truncated": false, + "block": 1, + "row": 1472 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/engine.io/lib/socket.js", + "sha256": "13c96b51482e2730f3a31a1dced580186ae5c7aaf37f67afd53b2dd7357ed33a", + "language": "JavaScript", + "lines": 522, + "truncated": false, + "block": 1, + "row": 1452 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/engine.io/lib/transport.js", + "sha256": "c12d39d33b6c341030d338a5dbef1210ba0c5cd82a468b66ec81f659d38f17d8", + "language": "JavaScript", + "lines": 110, + "truncated": false, + "block": 1, + "row": 1075 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/engine.io/lib/transports/index.js", + "sha256": "1d4f5429eb401e0bee740a80079f3e8a3f472e4ebc3a6b1a0a365f021e5a8335", + "language": "JavaScript", + "lines": 31, + "truncated": false, + "block": 1, + "row": 690 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/engine.io/lib/transports/polling-jsonp.js", + "sha256": "be25b5d4bf26dc0049d109f7853a4f1166e74c5aa376fa739021f426a1a5351a", + "language": "JavaScript", + "lines": 58, + "truncated": false, + "block": 1, + "row": 979 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/engine.io/lib/transports/polling.js", + "sha256": "451fe4cb044468f10264bce33ebdde92db4a0cfe3fee162f068951eb1e7200e3", + "language": "JavaScript", + "lines": 393, + "truncated": false, + "block": 1, + "row": 1404 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/engine.io/lib/transports/websocket.js", + "sha256": "a423a3cf6f6f8f2a8ba5ddc92f4de5f62ac514ca8754d3f8bb58e87df9234e15", + "language": "JavaScript", + "lines": 116, + "truncated": false, + "block": 1, + "row": 1095 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/engine.io/node_modules/cookie/index.js", + "sha256": "7cfd008fe13488830adfe6953df6916a6e5350acdbd03275901bbf302affd8ea", + "language": "JavaScript", + "lines": 202, + "truncated": false, + "block": 1, + "row": 1242 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/engine.io/node_modules/debug/src/browser.js", + "sha256": "4e3dc6d0e1db58a0d74206b443f35582d3b717be56a0f6d030c34af6c2ad9f62", + "language": "JavaScript", + "lines": 269, + "truncated": false, + "block": 1, + "row": 1329 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/engine.io/node_modules/debug/src/common.js", + "sha256": "ae6855e9f5ef6687aa8f76e69dd1854f1b99985146434daff310150083cfde02", + "language": "JavaScript", + "lines": 261, + "truncated": false, + "block": 1, + "row": 1332 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/engine.io/node_modules/debug/src/index.js", + "sha256": "aa127ff1752b7d9c7415c5c7bb6994d9aa722b81bcbcab4bd48316b013d23bf3", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 616 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/engine.io/node_modules/debug/src/node.js", + "sha256": "f237adcb52849de7c128f57e0468b52353c529a6c8341810477c0e7144359559", + "language": "JavaScript", + "lines": 263, + "truncated": false, + "block": 1, + "row": 1283 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/engine.io/node_modules/ms/index.js", + "sha256": "55986972f5f3c9446f876c576e1cd30fd4f04cd26527efbb5ad834637c740e4c", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1169 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/escape-goat/index.d.ts", + "sha256": "3bcc26119b56f23b4cc5fe82897a359d40aa414d3901a613833adedbc4ada12e", + "language": "TypeScript", + "lines": 62, + "truncated": false, + "block": 1, + "row": 12090 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/escape-goat/index.js", + "sha256": "e963c05053adf4f814b93c0baf16eae9cdf5f526891dc015c5c6944365df4613", + "language": "JavaScript", + "lines": 33, + "truncated": false, + "block": 1, + "row": 772 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/escape-html/index.js", + "sha256": "42a7f91883d0c5ce9292dda4e017e1f8664d34b09276d89fb6f3859c29d1ca9b", + "language": "JavaScript", + "lines": 78, + "truncated": false, + "block": 1, + "row": 956 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/etag/index.js", + "sha256": "a95a23b9a60726a4522b768c88ad73a7ea2c539d220068227f5510a8ee2008ae", + "language": "JavaScript", + "lines": 131, + "truncated": false, + "block": 1, + "row": 1120 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/expand-template/index.js", + "sha256": "2f3bbc7d7e54e16d91683936a7fa70db16e2cf1b4c8c72451f3d3a6a40e0f701", + "language": "JavaScript", + "lines": 26, + "truncated": false, + "block": 1, + "row": 731 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/expand-template/test.js", + "sha256": "906dae046928f840df7693081d7dc8f5f062773badb6658e201a382b97f7eda0", + "language": "JavaScript", + "lines": 67, + "truncated": false, + "block": 1, + "row": 1020 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/express/index.js", + "sha256": "4d2f5afc192178c5b0dc418d2da5826d52a8b6998771b011aede7fdba9118140", + "language": "JavaScript", + "lines": 11, + "truncated": false, + "block": 1, + "row": 580 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/express/lib/application.js", + "sha256": "2ee440da0ae3bce6c3424037eda81f2ad3b5bae606393b0cc98838afe421a7e2", + "language": "JavaScript", + "lines": 644, + "truncated": false, + "block": 1, + "row": 1457 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/express/lib/express.js", + "sha256": "2f25585c03c3050779c8f5f00597f8653f4fb8a97448ef8ef8cb21e65ba4d15d", + "language": "JavaScript", + "lines": 116, + "truncated": false, + "block": 1, + "row": 1110 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/express/lib/middleware/init.js", + "sha256": "48c1d12f1494b20377fcdeec9056272eff84ed8c081e1e56dc2aea395f77d19c", + "language": "JavaScript", + "lines": 43, + "truncated": false, + "block": 1, + "row": 798 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/express/lib/middleware/query.js", + "sha256": "6edce3963588b42e41942900b24218e665b97df0c0b1c74090b2b934fa68ca08", + "language": "JavaScript", + "lines": 47, + "truncated": false, + "block": 1, + "row": 815 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/express/lib/request.js", + "sha256": "ef5c0c9e61aa1ca77f7301bcdd97bc5151ea435a94928d2b32d4f522e9362f25", + "language": "JavaScript", + "lines": 525, + "truncated": false, + "block": 1, + "row": 1449 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/express/lib/response.js", + "sha256": "76011a43423d015fa15091989e5aeb33bbe6406e39a4d67d4a70291abbdc7c0a", + "language": "JavaScript", + "lines": 1142, + "truncated": false, + "block": 1, + "row": 1511 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/express/lib/router/index.js", + "sha256": "523e4d1c5ae75942782c859a615bc5a0736f7407eec4017c80d9836fbee53632", + "language": "JavaScript", + "lines": 662, + "truncated": false, + "block": 1, + "row": 1461 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/express/lib/router/layer.js", + "sha256": "c90709dcba8d9a6cfd1f2b4ef6d7a22d833e317f0c876d884342cee5a96f8a02", + "language": "JavaScript", + "lines": 181, + "truncated": false, + "block": 1, + "row": 1193 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/express/lib/router/route.js", + "sha256": "955489d45ded1b7e0f26b01ac6a1dc0e017766ec920098234ec80584598274c4", + "language": "JavaScript", + "lines": 216, + "truncated": false, + "block": 1, + "row": 1245 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/express/lib/utils.js", + "sha256": "ed228a1664da0df1ce485d85b2770c33bd50ae81796b1ac9568532a3a9fa6aed", + "language": "JavaScript", + "lines": 306, + "truncated": false, + "block": 1, + "row": 1326 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/express/lib/view.js", + "sha256": "78152ed5428dd5357cb4858afc499fbf46c300cc000b24e145a234f69dbfa141", + "language": "JavaScript", + "lines": 182, + "truncated": false, + "block": 1, + "row": 1197 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/file-uri-to-path/index.d.ts", + "sha256": "46eb38b4f992126135e00159041a6e69e46402e56613bdc891d7b0d28fc31e37", + "language": "TypeScript", + "lines": 2, + "truncated": false, + "block": 1, + "row": 12005 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/file-uri-to-path/index.js", + "sha256": "e62293e871bdd5a7449ff3c7956c9536ec1d2ea7369461de77322b5256bb93e7", + "language": "JavaScript", + "lines": 66, + "truncated": false, + "block": 1, + "row": 1010 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/file-uri-to-path/test/test.js", + "sha256": "223c25dba6fefbb7cb491b026a32f070b1425475d3cd2d04627be5d71a07fd38", + "language": "JavaScript", + "lines": 24, + "truncated": false, + "block": 1, + "row": 729 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/fill-range/index.js", + "sha256": "cb90b877d48014cc7ed09733a25554012be972564d3740cd234635372d5eca26", + "language": "JavaScript", + "lines": 249, + "truncated": false, + "block": 1, + "row": 1343 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/finalhandler/index.js", + "sha256": "e1e178afccce64f96a8d0fb72030f636ecf9c2b8a5588ef9b2a72cb30d2ab20c", + "language": "JavaScript", + "lines": 331, + "truncated": false, + "block": 1, + "row": 1350 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/forwarded/index.js", + "sha256": "fa9e9b3f81a6de8848e446678ad4f86218e3c683d8086a285b9d8a9f0963f2c3", + "language": "JavaScript", + "lines": 76, + "truncated": false, + "block": 1, + "row": 955 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/fresh/index.js", + "sha256": "85b46ce10c4fba71fb41666586572277f626bbc698266026372941b5267bfb60", + "language": "JavaScript", + "lines": 137, + "truncated": false, + "block": 1, + "row": 1151 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/fs-constants/browser.js", + "sha256": "b575b19b26a6c95048bbb9372440d1a37178a2d4e9ea98115f27121fa804d7ce", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 518 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/fs-constants/index.js", + "sha256": "0018c44a4f4577ed7e94b66d768eab3a822bc96fda9131cfb7e4dea99eb1b9b0", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 532 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/gauge/base-theme.js", + "sha256": "ad22f4a05d105265611188e123e4a7ee07be6d28dc5ef39c98b4f686e7a902a7", + "language": "JavaScript", + "lines": 14, + "truncated": false, + "block": 1, + "row": 659 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/gauge/error.js", + "sha256": "2957dc2045a462606df224526d880fcc7a472bc992a74b0db9b23bf1984a9b20", + "language": "JavaScript", + "lines": 24, + "truncated": false, + "block": 1, + "row": 720 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/gauge/has-color.js", + "sha256": "921ba24f2aa18494f12c19e48ee6f9713d5ec158c86cd529bac26cb18d26f6e5", + "language": "JavaScript", + "lines": 12, + "truncated": false, + "block": 1, + "row": 609 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/gauge/index.js", + "sha256": "f92c0e6d52b4445754aaf90fdcc6bd603aa3269caabc71c40dbf660088880fcf", + "language": "JavaScript", + "lines": 233, + "truncated": false, + "block": 1, + "row": 1366 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/gauge/node_modules/ansi-regex/index.js", + "sha256": "0f78062e714965d168fb51f1cb507aa95dd6270b563d04679adf2506245a62b3", + "language": "JavaScript", + "lines": 4, + "truncated": false, + "block": 1, + "row": 558 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/gauge/node_modules/is-fullwidth-code-point/index.js", + "sha256": "6701d64b4ad395f30b07f8685c04c6d61ca9c98094d75d0b2e06687e2386910f", + "language": "JavaScript", + "lines": 46, + "truncated": false, + "block": 1, + "row": 971 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/gauge/node_modules/string-width/index.js", + "sha256": "7d88178fb35726264fa3a8500abeae44d5b585491edf3cd5b0ecf4dec1bbb299", + "language": "JavaScript", + "lines": 37, + "truncated": false, + "block": 1, + "row": 748 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/gauge/node_modules/strip-ansi/index.js", + "sha256": "02abcd70c31523c8c34ffaa7222629ae14b12ccd425e49ffa964a5051614691c", + "language": "JavaScript", + "lines": 6, + "truncated": false, + "block": 1, + "row": 568 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/gauge/plumbing.js", + "sha256": "0db8c804e8d5b02a1f7eff072d3d7701f2cc5db341074bbe1e4bdd6ca8e3aa95", + "language": "JavaScript", + "lines": 48, + "truncated": false, + "block": 1, + "row": 936 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/gauge/process.js", + "sha256": "742bd2d12a7786e595955c8a846dbefe88591df39c2659491bddadbb8ed7dae6", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 544 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/gauge/progress-bar.js", + "sha256": "0e7f113040c0380731e6b6597a74d7909f4c7a25e3a8909cb06afcd96d95abdc", + "language": "JavaScript", + "lines": 35, + "truncated": false, + "block": 1, + "row": 864 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/gauge/render-template.js", + "sha256": "291274e3c3e3f680b248935dcd5296c4f76b2e592045231a6d5347782d57dbeb", + "language": "JavaScript", + "lines": 181, + "truncated": false, + "block": 1, + "row": 1316 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/gauge/set-immediate.js", + "sha256": "90dbb2e127d9b971731b2094b2516a463243e4074367dd4129fe2849ef598514", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 1, + "row": 561 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/gauge/set-interval.js", + "sha256": "19d2fa52118a39a7810efeb7bce45418f3e55ee7b445c85811d07a2f73b7bbb7", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 547 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/gauge/spin.js", + "sha256": "4ddb202944fd4e556edc68107b1a1f33dd25f1910876d2bf04eb5a58ae060c9d", + "language": "JavaScript", + "lines": 5, + "truncated": false, + "block": 1, + "row": 549 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/gauge/template-item.js", + "sha256": "ad544689ab58cb73a30ef89b33a10e3a805b5c22bff8b37f7f0c5b9a48f7e34a", + "language": "JavaScript", + "lines": 73, + "truncated": false, + "block": 1, + "row": 1041 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/gauge/theme-set.js", + "sha256": "3a6960a56ce064192d7ccfe4645c92745ebfc6cdbbce29dc10350ebafa8ab022", + "language": "JavaScript", + "lines": 115, + "truncated": false, + "block": 1, + "row": 1221 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/gauge/themes.js", + "sha256": "aa4a4755d792048d9bffc19f24c8be89f89338e9fba52a580df8bdea18e243a5", + "language": "JavaScript", + "lines": 54, + "truncated": false, + "block": 1, + "row": 985 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/gauge/wide-truncate.js", + "sha256": "9cda29fe56643215b87710e4d99df6a2a78101927d99047ee69dfb114017138d", + "language": "JavaScript", + "lines": 25, + "truncated": false, + "block": 1, + "row": 790 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/get-stream/buffer-stream.js", + "sha256": "1ec268bb80d3fdd7f9051ef0fc78355d33fec1981ca8e54dabbd9d20bda3dfa1", + "language": "JavaScript", + "lines": 51, + "truncated": false, + "block": 1, + "row": 795 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/get-stream/index.js", + "sha256": "720e68406fdebaf70ca93c6cf2af2f3a33f7e6ec03988831c9eaaa2a4bb94224", + "language": "JavaScript", + "lines": 50, + "truncated": false, + "block": 1, + "row": 934 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/github-from-package/example/url.js", + "sha256": "d4897228fa19f8b23e353331990ade0ed9ec285e5ec051288cbc737f315cfeb6", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 546 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/github-from-package/index.js", + "sha256": "b0ff829d7fd3310f3fa12a28f91d14d20cd1492758c0ee6db0ab3f068bff5806", + "language": "JavaScript", + "lines": 17, + "truncated": false, + "block": 1, + "row": 667 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/github-from-package/test/url.js", + "sha256": "a32f3a5f8f11ef9065514f38999feacb1353b259dece2f0c52719c6739c6e6b2", + "language": "JavaScript", + "lines": 19, + "truncated": false, + "block": 1, + "row": 718 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/glob-parent/index.js", + "sha256": "3de27f108133a575c0bd8160f7b3b2035dba797af990a102f37c5ee45ef63db3", + "language": "JavaScript", + "lines": 41, + "truncated": false, + "block": 1, + "row": 898 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/global-dirs/index.d.ts", + "sha256": "c066d3e24706d1477a8415ceb0464a1aebed81b5523b2b87927be7ae57111d1f", + "language": "TypeScript", + "lines": 60, + "truncated": false, + "block": 1, + "row": 12075 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/global-dirs/index.js", + "sha256": "28d6e8b9f1484c5e55e0cc5d1a42fc27e03889caf2bf621bef9b0334ebfdcfd7", + "language": "JavaScript", + "lines": 118, + "truncated": false, + "block": 1, + "row": 1181 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/got/source/as-promise.js", + "sha256": "d139282e078f6e77a60db0a41bbef4c2cf0449dd02fbc965a99df64c81f008d1", + "language": "JavaScript", + "lines": 108, + "truncated": false, + "block": 1, + "row": 1164 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/got/source/as-stream.js", + "sha256": "c9cb46c9bc894fdc29ecf4b15c2ee44e4a3c25c91f0fd6209f636aa0b21d40aa", + "language": "JavaScript", + "lines": 93, + "truncated": false, + "block": 1, + "row": 1101 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/got/source/create.js", + "sha256": "0c345a6ba801f065d347aa48e77972e7d73263b457e4cfb188f64af64b5d41c2", + "language": "JavaScript", + "lines": 79, + "truncated": false, + "block": 1, + "row": 1070 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/got/source/errors.js", + "sha256": "9d2e4f20afc46a352add4d00c0d15a82bd8cb56a23ed03deb926802d55633026", + "language": "JavaScript", + "lines": 107, + "truncated": false, + "block": 1, + "row": 1163 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/got/source/get-response.js", + "sha256": "c5c18c9955efa57da5cef13a9424d9a38412df0e344f13ad6ad5cbdbd006b3f7", + "language": "JavaScript", + "lines": 31, + "truncated": false, + "block": 1, + "row": 840 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/got/source/index.js", + "sha256": "4a02e633bed50e2a52c22e1901c37032777c8d5c45104f185519a21f1ebc1086", + "language": "JavaScript", + "lines": 60, + "truncated": false, + "block": 1, + "row": 842 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/got/source/known-hook-events.js", + "sha256": "0d8fec9bf904bb3d1735aec578b8aeddedf158b49d906448f7bd482e45260120", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 555 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/got/source/merge.js", + "sha256": "2b5bb2a5d8e088bf9e016296f5e8a59c4faff3f978e7c4f235b66099eb57eeeb", + "language": "JavaScript", + "lines": 73, + "truncated": false, + "block": 1, + "row": 1034 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/got/source/normalize-arguments.js", + "sha256": "9b7d0ee65c4a8a59904749af9e293ee5445d3e4059e7e248fea2f7e954e5f280", + "language": "JavaScript", + "lines": 265, + "truncated": false, + "block": 1, + "row": 1377 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/got/source/progress.js", + "sha256": "9ca35bc3647814a9b37bd497da47eb2e52bb9317ab76f37cdef49ebed1840d43", + "language": "JavaScript", + "lines": 96, + "truncated": false, + "block": 1, + "row": 1102 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/got/source/request-as-event-emitter.js", + "sha256": "924065592c208667e59c56e65a2c2023e34dfddf68a6bc8e50803479dba5e849", + "language": "JavaScript", + "lines": 312, + "truncated": false, + "block": 1, + "row": 1409 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/got/source/utils/deep-freeze.js", + "sha256": "7c95f89c5f563badae35326ebbd548078fdaff3b5f0283bd6e1cca84fff08db4", + "language": "JavaScript", + "lines": 12, + "truncated": false, + "block": 1, + "row": 602 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/got/source/utils/get-body-size.js", + "sha256": "5856e9557dd0477f5326f863af988ce1056723776142f6f64d213fa5733244ad", + "language": "JavaScript", + "lines": 32, + "truncated": false, + "block": 1, + "row": 724 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/got/source/utils/is-form-data.js", + "sha256": "4f7d04b4a6bc061cbd3a0abd1e0c383a7b52887e60402facfb026c22a40b05ac", + "language": "JavaScript", + "lines": 4, + "truncated": false, + "block": 1, + "row": 557 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/got/source/utils/timed-out.js", + "sha256": "366f20fffb876e969ae4c11a4ff19a43bca656eaccabf647afb348602f17fc62", + "language": "JavaScript", + "lines": 160, + "truncated": false, + "block": 1, + "row": 1269 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/got/source/utils/url-to-options.js", + "sha256": "ebe92bffe2cd437a6af913bde0c674eb830ab20f5c8c3f94f4c06dba817de4cc", + "language": "JavaScript", + "lines": 25, + "truncated": false, + "block": 1, + "row": 711 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/graceful-fs/clone.js", + "sha256": "d61107cea096d1fe1219cb9838b8bbddd622c291f7b32ba104a006c9d4eb817f", + "language": "JavaScript", + "lines": 19, + "truncated": false, + "block": 1, + "row": 663 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/graceful-fs/graceful-fs.js", + "sha256": "0348745f3da4913c5a40e4b53e776606058a391b55fec93d73c8f6a4c504fbb2", + "language": "JavaScript", + "lines": 354, + "truncated": false, + "block": 1, + "row": 1414 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/graceful-fs/legacy-streams.js", + "sha256": "60a6a7ecf7c3e55a3ffaae13433b6cff388b7205bba6daf393c863f77a949e36", + "language": "JavaScript", + "lines": 118, + "truncated": false, + "block": 1, + "row": 1142 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/graceful-fs/polyfills.js", + "sha256": "d6a0465ee5fb79d01e67ddac528534d2d0080134a14e269114309a47499b7127", + "language": "JavaScript", + "lines": 342, + "truncated": false, + "block": 1, + "row": 1424 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/has-flag/index.js", + "sha256": "dc0f89bdb136779f9ec062e0a2963a3ec89f45731eec9e8028907ae9f9e9034d", + "language": "JavaScript", + "lines": 8, + "truncated": false, + "block": 1, + "row": 619 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/has-unicode/index.js", + "sha256": "f7055f40138c028925ca76b74ea5a4041b4d67d2fa4dae2f78c2ec326ebc2bf3", + "language": "JavaScript", + "lines": 16, + "truncated": false, + "block": 1, + "row": 728 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/has-yarn/index.d.ts", + "sha256": "c7b79772e08ad4917a1a976fda51bd9fd639b4825d8e0b20012659af6bf05163", + "language": "TypeScript", + "lines": 16, + "truncated": false, + "block": 1, + "row": 12035 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/has-yarn/index.js", + "sha256": "a4f55c88f834e1a19cb4a0b6d61a8a1370a124debbc44a8bfda399f08bbe4a4b", + "language": "JavaScript", + "lines": 9, + "truncated": false, + "block": 1, + "row": 600 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/http-cache-semantics/index.js", + "sha256": "e7d167742a107d01ef06b1d392f759a7a655345608c5d9fb0dfffd90c590abb8", + "language": "JavaScript", + "lines": 673, + "truncated": false, + "block": 1, + "row": 1499 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/http-errors/index.js", + "sha256": "045acbd1e3cfb85728771480bf748ffd02217713826bf1226b2098f1a22742cc", + "language": "JavaScript", + "lines": 266, + "truncated": false, + "block": 1, + "row": 1322 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/iconv-lite/encodings/dbcs-codec.js", + "sha256": "d39bc17f93fc56af631b00e36542488923378cce5ad9e7db48252ce7a1e7b1ed", + "language": "JavaScript", + "lines": 555, + "truncated": false, + "block": 1, + "row": 1491 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/iconv-lite/encodings/dbcs-data.js", + "sha256": "e213f77e926605c30649ea48bcea851d1ec063bb17fa4c2ab6d3b64853b481ac", + "language": "JavaScript", + "lines": 176, + "truncated": false, + "block": 1, + "row": 1396 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/iconv-lite/encodings/index.js", + "sha256": "69607a9ee51b63333d0e7ee20a38b52e1e96652a4bbc09c701d70835fbbfe10a", + "language": "JavaScript", + "lines": 22, + "truncated": false, + "block": 1, + "row": 741 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/iconv-lite/encodings/internal.js", + "sha256": "39d9dd0568708a23c5999fcd6c417ec64f35ecbecd37205f91c7c6b59d14d773", + "language": "JavaScript", + "lines": 188, + "truncated": false, + "block": 1, + "row": 1338 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/iconv-lite/encodings/sbcs-codec.js", + "sha256": "fb511c4c70a6cb0e2a06d03e67ca88dca9f4da6266b909c7338e453d2ecc9fdb", + "language": "JavaScript", + "lines": 72, + "truncated": false, + "block": 1, + "row": 1087 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/iconv-lite/encodings/sbcs-data-generated.js", + "sha256": "2cf44b3f70c61c9cdd59fda7ec085bc3180809638f208c7239688ccb90a48866", + "language": "JavaScript", + "lines": 451, + "truncated": false, + "block": 1, + "row": 1520 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/iconv-lite/encodings/sbcs-data.js", + "sha256": "3116c986bff5d0b3a0d9ee1700d97ac466965a7b30d353300d408b41622604c2", + "language": "JavaScript", + "lines": 174, + "truncated": false, + "block": 1, + "row": 1284 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/iconv-lite/encodings/utf16.js", + "sha256": "baf708be438edf0fef70a3e34619c6be94cd53d963acb9b2542419d5fc3bb8c8", + "language": "JavaScript", + "lines": 177, + "truncated": false, + "block": 1, + "row": 1295 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/iconv-lite/encodings/utf7.js", + "sha256": "c814ad268d19265ccafc9f7bba2e8dfcdd2afdea62698bb24b7284b3f2ea18a0", + "language": "JavaScript", + "lines": 290, + "truncated": false, + "block": 1, + "row": 1418 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/iconv-lite/lib/bom-handling.js", + "sha256": "c230d25d8e7fbb50960c634b636b71327c409e9a77e67fe9446b566bdcea362d", + "language": "JavaScript", + "lines": 52, + "truncated": false, + "block": 1, + "row": 900 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/iconv-lite/lib/extend-node.js", + "sha256": "7b86aebd7175d940c50f60eac1981490962855d9723bf971981ddd703ba6af43", + "language": "JavaScript", + "lines": 217, + "truncated": false, + "block": 1, + "row": 1405 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/iconv-lite/lib/index.d.ts", + "sha256": "73aaee6a7a9cf41fb2c67158f4bc218f9da27545ea55648b2c10ca2a9600ae15", + "language": "TypeScript", + "lines": 24, + "truncated": false, + "block": 1, + "row": 12065 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/iconv-lite/lib/index.js", + "sha256": "77d20e2fd5bcd9e324fb6cfdb909cd06fdaf6a91769adffcf4d7c4c066cce4c3", + "language": "JavaScript", + "lines": 153, + "truncated": false, + "block": 1, + "row": 1301 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/iconv-lite/lib/streams.js", + "sha256": "25a423eaf41f8dc6bc40cb28189a24e2d63b990ed72c824940bed55d0264ea6d", + "language": "JavaScript", + "lines": 121, + "truncated": false, + "block": 1, + "row": 1201 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ieee754/index.d.ts", + "sha256": "1eb4db5f83679b3b6f8683611c93938948aa2d5d5e3988755f9e3a289388b75e", + "language": "TypeScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 12021 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ieee754/index.js", + "sha256": "fe3e2b20c1ebb57c3b390c8f685ad1e04e6f493517fa7e432f4351bb77a1a4d0", + "language": "JavaScript", + "lines": 85, + "truncated": false, + "block": 1, + "row": 1082 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ignore-by-default/index.js", + "sha256": "4ab6736fcd053a2475ba6d87aff70d821c3ecc8ca3bb05f50ae3e529568c83cc", + "language": "JavaScript", + "lines": 12, + "truncated": false, + "block": 1, + "row": 719 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/import-lazy/index.js", + "sha256": "3ff18e96b683d8dfa4e7b884f4f49fc411ab6c2eb69b13cafbaa285429b28965", + "language": "JavaScript", + "lines": 53, + "truncated": false, + "block": 1, + "row": 854 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/imurmurhash/imurmurhash.js", + "sha256": "45368bfe11080c4504b7804602015d93873303c5b13d5710af6c42e9abc35b4a", + "language": "JavaScript", + "lines": 138, + "truncated": false, + "block": 1, + "row": 1266 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/imurmurhash/imurmurhash.min.js", + "sha256": "ea8490563a229b89f2b779217938f9eb2bcf93dd89de9f7fc5c035632f0934b5", + "language": "JavaScript", + "lines": 12, + "truncated": false, + "block": 1, + "row": 1039 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/inherits/inherits.js", + "sha256": "7af9a5f76c00f72bed44b83824a8acd67febcfd3d34fd293c20c35aa7e6657f6", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 1, + "row": 575 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/inherits/inherits_browser.js", + "sha256": "34a98a1fcd39e12adbc98cc2d6dc3d99bb5a5a83ce8e57050826e9e539b4ecb0", + "language": "JavaScript", + "lines": 23, + "truncated": false, + "block": 1, + "row": 732 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ini/ini.js", + "sha256": "af981743e8a8e31abf3a608b02ade0fe0c07cf04b291ae7658a502e506370077", + "language": "JavaScript", + "lines": 206, + "truncated": false, + "block": 1, + "row": 1298 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ipaddr.js/ipaddr.min.js", + "sha256": "ab95215c182a1bea49617080dc12e52e3e80521894c37ce0478b69326c151440", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 1427 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ipaddr.js/lib/ipaddr.js", + "sha256": "d82a21a6872925dfe73e9aa10e9eb47baba398987560e36db107f44d92f069b0", + "language": "JavaScript", + "lines": 673, + "truncated": false, + "block": 1, + "row": 1482 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ipaddr.js/lib/ipaddr.js.d.ts", + "sha256": "662a75272462317059315f3028452dc8044f752ad0b6b61c084a7ae3eeb0f775", + "language": "TypeScript", + "lines": 68, + "truncated": false, + "block": 1, + "row": 12114 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/is-binary-path/index.d.ts", + "sha256": "d65a5fc8c0ec486e8227d3651241d91de8298420acbdadbfcac749c7633eb4f0", + "language": "TypeScript", + "lines": 17, + "truncated": false, + "block": 1, + "row": 12017 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/is-binary-path/index.js", + "sha256": "afac5b9e0f7ba381af21a403254299e075a714948d144c6f6b8dccee9c9188c0", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 1, + "row": 586 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/is-ci/bin.js", + "sha256": "34e06901c785d3220c276f45a32603bc8b7a183815f831b0025fdf5ff8aab138", + "language": "JavaScript", + "lines": 4, + "truncated": false, + "block": 1, + "row": 535 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/is-ci/index.js", + "sha256": "e1bf087a1d609af29278aa41f50093967bfd311163558d9c096743df50508e42", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 530 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/is-extglob/index.js", + "sha256": "68be041dd0379d295d89550d1f6f2e8c29645bdd92d14b427fe2e140b3c8f2f8", + "language": "JavaScript", + "lines": 20, + "truncated": false, + "block": 1, + "row": 683 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/is-fullwidth-code-point/index.js", + "sha256": "bc9e2fb309b067655b6abbb764941ac48014366a3662db209cf0e9d0a4db54dd", + "language": "JavaScript", + "lines": 46, + "truncated": false, + "block": 1, + "row": 962 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/is-glob/index.js", + "sha256": "b1f7614c14cd406a2409dfd59628ce5ea06666d017b65a7df12f83b62613c897", + "language": "JavaScript", + "lines": 48, + "truncated": false, + "block": 1, + "row": 904 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/is-installed-globally/index.d.ts", + "sha256": "75c3544a7502e33145b1e0b93cb42037a41c82e76699a455b056af7f8f9bc69d", + "language": "TypeScript", + "lines": 19, + "truncated": false, + "block": 1, + "row": 12029 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/is-installed-globally/index.js", + "sha256": "0d5136c5acac9ea60062a933894045364cf88b2f6893d4bfdacf783ea7670648", + "language": "JavaScript", + "lines": 15, + "truncated": false, + "block": 1, + "row": 634 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/is-npm/index.d.ts", + "sha256": "32b0ba649390a574b682269f47e6a8d9e69d84c8b18fbafa19665d22ab691119", + "language": "TypeScript", + "lines": 41, + "truncated": false, + "block": 1, + "row": 12054 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/is-npm/index.js", + "sha256": "351e098df10b45412253ff0ed0984fad6a615dd24d3c245176d057bba2f3ecdc", + "language": "JavaScript", + "lines": 9, + "truncated": false, + "block": 1, + "row": 611 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/is-number/index.js", + "sha256": "04255e482e181687823a95b207802ddd32e746c65dce4c95a5176fc192735960", + "language": "JavaScript", + "lines": 18, + "truncated": false, + "block": 1, + "row": 672 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/is-obj/index.d.ts", + "sha256": "aa907eac671382bb40ccad4bb8e9e33d48d3a7ecc264757b63da80e4cd1bbb14", + "language": "TypeScript", + "lines": 22, + "truncated": false, + "block": 1, + "row": 12023 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/is-obj/index.js", + "sha256": "0833a3eed3b0075f23e58f0107bebdedec6db53b4e7b1034d7ea7c9cfb932b0b", + "language": "JavaScript", + "lines": 6, + "truncated": false, + "block": 1, + "row": 562 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/is-path-inside/index.d.ts", + "sha256": "b0d361d5203bc25f62d66e00058a6d80390beb4f53008e15ce385e57ed5f406e", + "language": "TypeScript", + "lines": 27, + "truncated": false, + "block": 1, + "row": 12050 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/is-path-inside/index.js", + "sha256": "9e966ba7778f10442ff3b87057194d219e3b706739b53a6ad036bbcbca06ce44", + "language": "JavaScript", + "lines": 21, + "truncated": false, + "block": 1, + "row": 681 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/is-typedarray/index.js", + "sha256": "a4ccae1f8bee3671d9c563feb784cc65c0cf88aa28263035c707ce4e1b014147", + "language": "JavaScript", + "lines": 41, + "truncated": false, + "block": 1, + "row": 867 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/is-typedarray/test.js", + "sha256": "16eee98ca6531df335a703ea478ceffb182cc615250e1ea3dd5c91c8ec70de3b", + "language": "JavaScript", + "lines": 34, + "truncated": false, + "block": 1, + "row": 895 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/is-yarn-global/index.js", + "sha256": "ffc0a3870bf65102fffc505de80cba36b7a08d5b85fb77bc63328ab55efa7942", + "language": "JavaScript", + "lines": 12, + "truncated": false, + "block": 1, + "row": 613 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/isarray/index.js", + "sha256": "9b8c691372802da788c9c5f4e1ca2f1ed0b88ab8722176c2aea15e38ec86d249", + "language": "JavaScript", + "lines": 5, + "truncated": false, + "block": 1, + "row": 556 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/isarray/test.js", + "sha256": "46997dc4554dd5a554b4883a9c13180c628bb36baadf8f89d2db5861f5239f44", + "language": "JavaScript", + "lines": 20, + "truncated": false, + "block": 1, + "row": 618 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/json-buffer/index.js", + "sha256": "1aade4bd35df47ade393dad25d7aa3d70e381116f0fafbc7a378ebd971949262", + "language": "JavaScript", + "lines": 58, + "truncated": false, + "block": 1, + "row": 977 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/json-buffer/test/index.js", + "sha256": "4f1a5c2e61df86e63d9116daa45ca7da1e050d6829661dae53ad7740bafbe079", + "language": "JavaScript", + "lines": 63, + "truncated": false, + "block": 1, + "row": 931 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/keyv/src/index.js", + "sha256": "2f0043d0ff0844eb0f38f49f97d4071f0bc8262266d34337556c415bf222dad4", + "language": "JavaScript", + "lines": 103, + "truncated": false, + "block": 1, + "row": 1099 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/latest-version/index.d.ts", + "sha256": "1d770f0737712093455a443bc527a43bc7e232a88b4aa75efed8c7ae140c22a4", + "language": "TypeScript", + "lines": 42, + "truncated": false, + "block": 1, + "row": 12064 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/latest-version/index.js", + "sha256": "ded72e0890a4d2aea0636762197b0abcb4bb17e6c99531913e6437c175b2fcd6", + "language": "JavaScript", + "lines": 11, + "truncated": false, + "block": 1, + "row": 630 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/lowercase-keys/index.js", + "sha256": "cb3197cc93dea8c87f95def58797c8b544ba1d780ec8591133147b224e1e8a34", + "language": "JavaScript", + "lines": 11, + "truncated": false, + "block": 1, + "row": 577 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/make-dir/index.d.ts", + "sha256": "08c19f0b735146ea0387e29083bcd6416fd64d97fc12e68867cda678d41a6f60", + "language": "TypeScript", + "lines": 66, + "truncated": false, + "block": 1, + "row": 12082 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/make-dir/index.js", + "sha256": "951713696f119877cca572ed7f28087c472d7ccb35f92c7baa942f4ef09e8422", + "language": "JavaScript", + "lines": 156, + "truncated": false, + "block": 1, + "row": 1183 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/make-dir/node_modules/semver/bin/semver.js", + "sha256": "a3ed56435cbd4b3f07a80c4a343edd86d787f89bf2cee0105bdf68cb653ba2a0", + "language": "JavaScript", + "lines": 174, + "truncated": false, + "block": 1, + "row": 1285 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/make-dir/node_modules/semver/semver.js", + "sha256": "acfcb006e8cbfa5ec841829d60ecc5adb9c1012e39df0b7d2d29e44116001850", + "language": "JavaScript", + "lines": 1596, + "truncated": false, + "block": 1, + "row": 1532 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/media-typer/index.js", + "sha256": "27af6de782c53c57c4a8f111a81cd26b8d68c896c2dcd83e27da4c73234ce16b", + "language": "JavaScript", + "lines": 270, + "truncated": false, + "block": 1, + "row": 1345 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/merge-descriptors/index.js", + "sha256": "88564234b9eeb2f0fe2cc5d03f617a97eb4802f126bdd21aa223c3c87c02531c", + "language": "JavaScript", + "lines": 60, + "truncated": false, + "block": 1, + "row": 926 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/methods/index.js", + "sha256": "670576bfe96eb9e4fecd1e8c19f491a68b9bfd7da0e7564cd0a3c2ebd3839180", + "language": "JavaScript", + "lines": 69, + "truncated": false, + "block": 1, + "row": 882 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/mime-db/index.js", + "sha256": "a2532ace32711ae90deb4ae4654c5bc4e56f0a1e21bdd15ba26334bf723dfb09", + "language": "JavaScript", + "lines": 11, + "truncated": false, + "block": 1, + "row": 559 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/mime-types/index.js", + "sha256": "8cfccaac306beb650d60c7f069ae0f4b39d648f1e3914696b18c133ab33e6419", + "language": "JavaScript", + "lines": 188, + "truncated": false, + "block": 1, + "row": 1218 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/mime/cli.js", + "sha256": "f8691b2f01b77334e33bb6898d69c80dc05b18e4be66760c476331a388f9cd27", + "language": "JavaScript", + "lines": 8, + "truncated": false, + "block": 1, + "row": 564 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/mime/mime.js", + "sha256": "a121a0b9e780e9ae349a26227a0d25c33ebac2d52a85aae5affa84ba0f53f16c", + "language": "JavaScript", + "lines": 108, + "truncated": false, + "block": 1, + "row": 1153 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/mime/src/build.js", + "sha256": "facaa3974bfa27c832a629735077528b59cbc088fcfd2c22bbacba152c76ef2a", + "language": "JavaScript", + "lines": 53, + "truncated": false, + "block": 1, + "row": 952 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/mime/src/test.js", + "sha256": "516efe52b18b29b36b9ac4ed1d679a497e0846b269a9cf101fb405fbcc8b402b", + "language": "JavaScript", + "lines": 60, + "truncated": false, + "block": 1, + "row": 1103 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/mimic-response/index.js", + "sha256": "f3f22eb462031b083266f9810a66dfc6c9d9a186fd5c10a3f7c016b06cd535ff", + "language": "JavaScript", + "lines": 32, + "truncated": false, + "block": 1, + "row": 756 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/minimatch/minimatch.js", + "sha256": "c0eb14d89faff03e69a2fb579efda26801bcd9f890b1f98cc2e772e448c9375c", + "language": "JavaScript", + "lines": 923, + "truncated": false, + "block": 1, + "row": 1509 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/minimist/example/parse.js", + "sha256": "30d70e15175f8b39f7a63d3ebffaced210eeb41ca3085cd229542f43c58ae946", + "language": "JavaScript", + "lines": 2, + "truncated": false, + "block": 1, + "row": 534 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/minimist/index.js", + "sha256": "0feebc85297a35829a4a3a6c5346ddcca582052e5ebf0d33bd024abe8cd5245b", + "language": "JavaScript", + "lines": 245, + "truncated": false, + "block": 1, + "row": 1379 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/minimist/test/all_bool.js", + "sha256": "8646e134f6c0c711a2b79697134e750df6a93008da7657e9a7674e1c3e76675e", + "language": "JavaScript", + "lines": 32, + "truncated": false, + "block": 1, + "row": 753 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/minimist/test/bool.js", + "sha256": "5733f654e511732616b481ab712f1dd06b1143fe3dfdf5660e6a6717420e3221", + "language": "JavaScript", + "lines": 178, + "truncated": false, + "block": 1, + "row": 1251 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/minimist/test/dash.js", + "sha256": "3fd5f504a5b18db2fc71b8bd1ef6f8ef218ed40064ec83c5ed650c475ffbeb84", + "language": "JavaScript", + "lines": 31, + "truncated": false, + "block": 1, + "row": 857 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/minimist/test/default_bool.js", + "sha256": "3c1910e75d38e1656fbb1d592d21d863bffdb569878833a9081317b22a73dd50", + "language": "JavaScript", + "lines": 35, + "truncated": false, + "block": 1, + "row": 765 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/minimist/test/dotted.js", + "sha256": "97ebd99c38b877b99e5d03d55e1f035d729918841ec6340096759ef33a2cd9ce", + "language": "JavaScript", + "lines": 22, + "truncated": false, + "block": 1, + "row": 710 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/minimist/test/kv_short.js", + "sha256": "4032b7f71ed9028e415ec1d38a14f6798453876e2f1e31a031724de335a7fcfa", + "language": "JavaScript", + "lines": 16, + "truncated": false, + "block": 1, + "row": 647 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/minimist/test/long.js", + "sha256": "c2ec0fc2eef2dfa17b81c3a07f853a5493b88805f1c2d6743bfbac39a4dd66ac", + "language": "JavaScript", + "lines": 31, + "truncated": false, + "block": 1, + "row": 767 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/minimist/test/num.js", + "sha256": "53192020ca4b4b32df3e8ad3e351dba4b77993b2d1580525e254ce2e544a25b5", + "language": "JavaScript", + "lines": 36, + "truncated": false, + "block": 1, + "row": 826 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/minimist/test/parse.js", + "sha256": "3e54acabcc5365e3489039a478d7d64cf1e245dfc7b3f0a1229b67af7499cbb2", + "language": "JavaScript", + "lines": 197, + "truncated": false, + "block": 1, + "row": 1279 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/minimist/test/parse_modified.js", + "sha256": "0c24eb30ec9493bba5707894519c8eefac8d48406913d65dd7034dc69925c41a", + "language": "JavaScript", + "lines": 9, + "truncated": false, + "block": 1, + "row": 585 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/minimist/test/proto.js", + "sha256": "df8a4109190c18536003eab1192365fa88d50f184970c687193e003b73937aa0", + "language": "JavaScript", + "lines": 44, + "truncated": false, + "block": 1, + "row": 928 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/minimist/test/short.js", + "sha256": "b59d67ec44ca74fcaa8ade736ec9ae5f62848a5c208cedf81da51eb818a30b21", + "language": "JavaScript", + "lines": 67, + "truncated": false, + "block": 1, + "row": 992 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/minimist/test/stop_early.js", + "sha256": "7a1095012811a80eaaa8d6e789abdc5738d52cd5680952d7d7085288168f1c0c", + "language": "JavaScript", + "lines": 15, + "truncated": false, + "block": 1, + "row": 624 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/minimist/test/unknown.js", + "sha256": "04b227c0c9545091e8eafa5e018dc64c82612163ab4e2c36e233137cb678f944", + "language": "JavaScript", + "lines": 102, + "truncated": false, + "block": 1, + "row": 1128 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/minimist/test/whitespace.js", + "sha256": "c3e3e14aa9030c203ad41030596ed6a1958bc85515608668bc80cfb796c1498c", + "language": "JavaScript", + "lines": 8, + "truncated": false, + "block": 1, + "row": 574 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/mkdirp-classic/index.js", + "sha256": "6e4f5d6d26baf194cf4bbb4d82110046ed6215205b412c57a7b5097dc1623eac", + "language": "JavaScript", + "lines": 98, + "truncated": false, + "block": 1, + "row": 1138 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ms/index.js", + "sha256": "4bd92209cb9dacf3e3773e725acb7aaec43ea9e78540324e4d0f73e5ce9adef7", + "language": "JavaScript", + "lines": 152, + "truncated": false, + "block": 1, + "row": 1156 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nan/include_dirs.js", + "sha256": "c32b11511aba771a4c6765de2c73be416f205316ca9f37283170627e778e8d65", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 529 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nan/nan.h", + "sha256": "13ac73280e04365a24efce9187d908ab9790595292635fe722a72bdeb8142845", + "language": "C/C++", + "lines": 2898, + "truncated": false, + "block": 1, + "row": 438 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nan/nan_callbacks.h", + "sha256": "56f32971390591edd47beaeca181940a40f15bf92a61d4ce6b0d7c6c5937993a", + "language": "C/C++", + "lines": 88, + "truncated": false, + "block": 1, + "row": 379 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nan/nan_callbacks_12_inl.h", + "sha256": "8c1a2088333301f5ea3cf6f8c8d4d33ff3efc506163d85d6c175517f7618da1f", + "language": "C/C++", + "lines": 514, + "truncated": false, + "block": 1, + "row": 433 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nan/nan_callbacks_pre_12_inl.h", + "sha256": "38d1d686ba458e3af2da8874b31d69672648830f173fa0b6367a83f54442c90f", + "language": "C/C++", + "lines": 520, + "truncated": false, + "block": 1, + "row": 431 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nan/nan_converters.h", + "sha256": "6e92e34bb6915434f8093d80db908929984222dfd6b5ce70095fa9400a196154", + "language": "C/C++", + "lines": 72, + "truncated": false, + "block": 1, + "row": 353 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nan/nan_converters_43_inl.h", + "sha256": "7045e630e82c24629d8dfeaa375b4fb471dd24b6df72fb2b89d3803c41139e9d", + "language": "C/C++", + "lines": 68, + "truncated": false, + "block": 1, + "row": 370 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nan/nan_converters_pre_43_inl.h", + "sha256": "5c2eaa295ec1caf3f3ef319b785b436b3e0bd2c4440ff576b5aba82d12262394", + "language": "C/C++", + "lines": 42, + "truncated": false, + "block": 1, + "row": 329 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nan/nan_define_own_property_helper.h", + "sha256": "cae6c4f3bdba55e362011702976075a8f23c2b555fdbd22ea0a90d3ac5572a20", + "language": "C/C++", + "lines": 29, + "truncated": false, + "block": 1, + "row": 319 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nan/nan_implementation_12_inl.h", + "sha256": "7ddff7c5e82c601a6cab39785be4fc84d2f3513e0c2e731a90f5c9f3eb9b2546", + "language": "C/C++", + "lines": 430, + "truncated": false, + "block": 1, + "row": 429 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nan/nan_implementation_pre_12_inl.h", + "sha256": "09bcabcf7d99588c375545a7e6862374e717f5bdd7f6387b2c76377863b7817b", + "language": "C/C++", + "lines": 263, + "truncated": false, + "block": 1, + "row": 418 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nan/nan_json.h", + "sha256": "db8990e9fd1c1fef3a354f9e8ecb0830a41be9ac5f6754af520252f513c046b9", + "language": "C/C++", + "lines": 166, + "truncated": false, + "block": 1, + "row": 411 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nan/nan_maybe_43_inl.h", + "sha256": "e79a940c0641672fcc463d5eb73e1fa017e5b7b2c13ec1d492ed98efb0830001", + "language": "C/C++", + "lines": 356, + "truncated": false, + "block": 1, + "row": 428 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nan/nan_maybe_pre_43_inl.h", + "sha256": "a128293f1802bbe309c11e2764f2a5d1fad9c7dd90eea9dbf7d046da481f8195", + "language": "C/C++", + "lines": 268, + "truncated": false, + "block": 1, + "row": 415 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nan/nan_new.h", + "sha256": "11fbc38eb49cb6f3c142022c5b47bccc6a18047ad7d509af011feee48f02d7fd", + "language": "C/C++", + "lines": 340, + "truncated": false, + "block": 1, + "row": 423 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nan/nan_object_wrap.h", + "sha256": "57cf6cd941b4a807bcbe69d3555bcefd0dca0ec77f459ad77dac07b491f063d5", + "language": "C/C++", + "lines": 156, + "truncated": false, + "block": 1, + "row": 401 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nan/nan_persistent_12_inl.h", + "sha256": "f720e2e961664e897bf8e82d9181d810f0cb681a7e7bd5b8200c55649d3f02b2", + "language": "C/C++", + "lines": 132, + "truncated": false, + "block": 1, + "row": 399 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nan/nan_persistent_pre_12_inl.h", + "sha256": "f502353164d1538f8059c2cf999e55fa462e38cdb15ae97f94af0aaed51e58d2", + "language": "C/C++", + "lines": 242, + "truncated": false, + "block": 1, + "row": 412 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nan/nan_private.h", + "sha256": "c9a7b80803ee292a0e89ea40a5afffd21f2c5af387ddec405fd215e8dd3d60f7", + "language": "C/C++", + "lines": 73, + "truncated": false, + "block": 1, + "row": 363 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nan/nan_string_bytes.h", + "sha256": "e06ce2cde16826c454691f8f310c3562ddc0d560f132db2fe61b3cb6dd29f101", + "language": "C/C++", + "lines": 305, + "truncated": false, + "block": 1, + "row": 419 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nan/nan_typedarray_contents.h", + "sha256": "7e3c67b148130da1c4e935aa910b91c18d453f42e2d73b1c57c9839c9a5c5720", + "language": "C/C++", + "lines": 96, + "truncated": false, + "block": 1, + "row": 380 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nan/nan_weak.h", + "sha256": "2303a6f5ba881d000511cf698adffd8bd8c448ba8fece209b9d503825cdd95f0", + "language": "C/C++", + "lines": 437, + "truncated": false, + "block": 1, + "row": 430 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nan/tools/1to2.js", + "sha256": "04901f617fc36da5bc8a2f4cf1bdcb39d5e38e3a7d084a4a61d4bdb85aac0138", + "language": "JavaScript", + "lines": 412, + "truncated": false, + "block": 1, + "row": 1459 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/napi-build-utils/index.js", + "sha256": "bcc8b6546ab1c893638d0886d312f421c1a5222a1b0c62a31432d3cbf7072aae", + "language": "JavaScript", + "lines": 213, + "truncated": false, + "block": 1, + "row": 1369 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/negotiator/index.js", + "sha256": "6019e096fc7bc12e4811f0f363e57b7cd60f08b8ea995e15aa33614d99332377", + "language": "JavaScript", + "lines": 124, + "truncated": false, + "block": 1, + "row": 1199 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/negotiator/lib/charset.js", + "sha256": "e6522a2df58f21a6cdf8d146f7e85b9a49bcaf68b813dec15068a8e84fc582c3", + "language": "JavaScript", + "lines": 169, + "truncated": false, + "block": 1, + "row": 1176 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/negotiator/lib/encoding.js", + "sha256": "35421dc78d3c1b608922427bbd6e524518168621ff1a44919fc591ca297e813c", + "language": "JavaScript", + "lines": 184, + "truncated": false, + "block": 1, + "row": 1210 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/negotiator/lib/language.js", + "sha256": "403a63ab9e6304a1c00443d7891a22eb1ef8357729d36a224d8f9ea393f5e93a", + "language": "JavaScript", + "lines": 179, + "truncated": false, + "block": 1, + "row": 1202 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/negotiator/lib/mediaType.js", + "sha256": "0dab239c924fa4d5f823548e25dc9f10315bf490b821827b640318b7aa200577", + "language": "JavaScript", + "lines": 294, + "truncated": false, + "block": 1, + "row": 1305 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/node-abi/index.js", + "sha256": "3833f15955ca5a235714eda1de0a35d4d49ae417f265a5923cc3a78842912ea0", + "language": "JavaScript", + "lines": 170, + "truncated": false, + "block": 1, + "row": 1337 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/node-abi/scripts/update-abi-registry.js", + "sha256": "c149c1cb2283a6646b3c23539ccaaa7bc45026196bf6eaec5ce9a37e9d604a60", + "language": "JavaScript", + "lines": 113, + "truncated": false, + "block": 1, + "row": 1180 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/node-abi/test/index.js", + "sha256": "b14928e12e0d989141ffedad956b87787c05c8c37accd4f84fa78ceaf1f66ed4", + "language": "JavaScript", + "lines": 174, + "truncated": false, + "block": 1, + "row": 1357 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/bin/nodemon.js", + "sha256": "6518cf679802a8c2c439c9dcf31a52023c01e31183a77c7060678896d0ce85cc", + "language": "JavaScript", + "lines": 16, + "truncated": false, + "block": 1, + "row": 680 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/bin/postinstall.js", + "sha256": "3e4ee804766566fbf73ccc314cd3ff1132caa52339acce20b82bbf60b4da2541", + "language": "JavaScript", + "lines": 29, + "truncated": false, + "block": 1, + "row": 878 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/commitlint.config.js", + "sha256": "acddb0df1763bc79e1065659c2ea8a32a4512b46b902388946752e6e56967173", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 536 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/lib/cli/index.js", + "sha256": "5c5b008f28d9aa1d6f8c30a30de037b95b50141a20ad0f029d0d79bcd75caa4d", + "language": "JavaScript", + "lines": 49, + "truncated": false, + "block": 1, + "row": 893 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/lib/cli/parse.js", + "sha256": "93b9bbbc19e6f0456185d7c9e9ce11e994f41c01e46067959c5168bd345b0313", + "language": "JavaScript", + "lines": 230, + "truncated": false, + "block": 1, + "row": 1333 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/lib/config/command.js", + "sha256": "50f10478098f06b77a58b351a93bb8fe7a7572bfbfb3e6f0bf668460865da3a7", + "language": "JavaScript", + "lines": 43, + "truncated": false, + "block": 1, + "row": 933 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/lib/config/defaults.js", + "sha256": "d1f1a9af4234aed56139239ad564f913eb2fac8557c563e95dd996be77d515f8", + "language": "JavaScript", + "lines": 28, + "truncated": false, + "block": 1, + "row": 784 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/lib/config/exec.js", + "sha256": "fb70eb71679fbbf78c17126a71dbe9f9a5840c2a9e93e1f5b6a890e8ed0c4921", + "language": "JavaScript", + "lines": 225, + "truncated": false, + "block": 1, + "row": 1360 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/lib/config/index.js", + "sha256": "be155df5dbc29c88c67c936f2840d2bb3abd09981fdb6db6480d54beeb27e9fe", + "language": "JavaScript", + "lines": 93, + "truncated": false, + "block": 1, + "row": 1124 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/lib/config/load.js", + "sha256": "8662228900b5eb3c865d5c7c01dbb6fda97ef8408a934acf95fa1c0cb40b06a2", + "language": "JavaScript", + "lines": 256, + "truncated": false, + "block": 1, + "row": 1378 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/lib/help/index.js", + "sha256": "1c1678d18dc75f67bbfae8c92836543af6990bce6b1cf1ad3acfb52285dac393", + "language": "JavaScript", + "lines": 27, + "truncated": false, + "block": 1, + "row": 747 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/lib/index.js", + "sha256": "95111d84575ab36b697d760e130d722daea3d322cf56612f2ae67c7b3e8cef19", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 517 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/lib/monitor/index.js", + "sha256": "cc16aeb163da6cc7746bf5ced2d11f1436e458c7ee803241e9a9fa1d107450fd", + "language": "JavaScript", + "lines": 4, + "truncated": false, + "block": 1, + "row": 542 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/lib/monitor/match.js", + "sha256": "d09e469209e55541c8c67fa7ab25b7d4e051ce26d36f737c6264d4ade4b26d63", + "language": "JavaScript", + "lines": 276, + "truncated": false, + "block": 1, + "row": 1354 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/lib/monitor/run.js", + "sha256": "9b2740bac6fe1c4a04f011a41d1b16bfe1c3ef3b7d06aa3a73b92470c0b02515", + "language": "JavaScript", + "lines": 474, + "truncated": false, + "block": 1, + "row": 1455 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/lib/monitor/signals.js", + "sha256": "5c16e2e5f7101eea3f13c19da7c7a9e6fa02f7d1098b170e71f07d14f915e394", + "language": "JavaScript", + "lines": 34, + "truncated": false, + "block": 1, + "row": 691 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/lib/monitor/watch.js", + "sha256": "f2cec829364b862e48db2fa3c259562a609753c3c01808f317d028a44f614808", + "language": "JavaScript", + "lines": 239, + "truncated": false, + "block": 1, + "row": 1347 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/lib/nodemon.js", + "sha256": "17f8fe88dece2c88e8de7235ec0ae339b80896c8a66c84174e13f01ad92d7992", + "language": "JavaScript", + "lines": 311, + "truncated": false, + "block": 1, + "row": 1407 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/lib/rules/add.js", + "sha256": "3cc60361f99b1080c66fce4d6ea0390a38c2a49e821e7f21dc43ed2fafa31277", + "language": "JavaScript", + "lines": 89, + "truncated": false, + "block": 1, + "row": 1144 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/lib/rules/index.js", + "sha256": "3e64a2a35a97e41ff8c073299f07c3754d99b0a6e7d42faef7dc02d61d67757f", + "language": "JavaScript", + "lines": 53, + "truncated": false, + "block": 1, + "row": 935 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/lib/rules/parse.js", + "sha256": "9259995d8e1ca1737ff36cf4f97c80e55d812726ec4ead43b6c0829ce9679df9", + "language": "JavaScript", + "lines": 43, + "truncated": false, + "block": 1, + "row": 778 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/lib/spawn.js", + "sha256": "2e04accc895647a5b7b8e0de3eb6df971b8c1d734b522cc753eb4934c5fb03ca", + "language": "JavaScript", + "lines": 55, + "truncated": false, + "block": 1, + "row": 930 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/lib/utils/bus.js", + "sha256": "8ebae78d8d75951b714acaa3e1a3d7f15b382a92b90c8040423e9866d97f1ad9", + "language": "JavaScript", + "lines": 44, + "truncated": false, + "block": 1, + "row": 845 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/lib/utils/clone.js", + "sha256": "5062a7c87599935fec99e505f3f463c3e0872455da73f8c8054ce0788c513ba2", + "language": "JavaScript", + "lines": 40, + "truncated": false, + "block": 1, + "row": 792 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/lib/utils/colour.js", + "sha256": "a4969a552701982cd415005d5ce162f955cf26c205229d2f4c75ed4a75bceceb", + "language": "JavaScript", + "lines": 26, + "truncated": false, + "block": 1, + "row": 737 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/lib/utils/index.js", + "sha256": "5a8acbef98f9574211d57a0be0718c31231d5d7f8d14b828b742321d65e700f7", + "language": "JavaScript", + "lines": 102, + "truncated": false, + "block": 1, + "row": 1131 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/lib/utils/log.js", + "sha256": "dabbcccb1bf0089d96ce9592a575cb64139926d6b899091c1dbd37632e9269c4", + "language": "JavaScript", + "lines": 82, + "truncated": false, + "block": 1, + "row": 1014 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/lib/utils/merge.js", + "sha256": "c4598a00e91b93b7964bb874e8ceed6d614436335a7fd81aff7f504499e210dd", + "language": "JavaScript", + "lines": 47, + "truncated": false, + "block": 1, + "row": 914 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/lib/version.js", + "sha256": "5071083e2e09969b2741a46cdedbbfcb2608fa35c1d1237e3bcf134749fb5ecd", + "language": "JavaScript", + "lines": 100, + "truncated": false, + "block": 1, + "row": 1118 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/node_modules/debug/node.js", + "sha256": "996b381f353555cb172ebb2802bb2a7323442ff67b7b530cc26834058d7f31a2", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 519 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/node_modules/debug/src/browser.js", + "sha256": "7103921cea158e1740ed28463406b77fd5a05285690ccdba480bd5fb9c162bb8", + "language": "JavaScript", + "lines": 180, + "truncated": false, + "block": 1, + "row": 1342 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/node_modules/debug/src/common.js", + "sha256": "631983c237a5cf407a98526330f4cdc92b88fc557c34f86a9b8ee63285b346ba", + "language": "JavaScript", + "lines": 249, + "truncated": false, + "block": 1, + "row": 1323 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/node_modules/debug/src/index.js", + "sha256": "49c2426f5032902827c51781dbbedfa5d77c0934d785e3125efde53b5238eaaa", + "language": "JavaScript", + "lines": 12, + "truncated": false, + "block": 1, + "row": 628 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/node_modules/debug/src/node.js", + "sha256": "6c360c37e9dc1d14f41e35efdc66b707a56f069e24414307c76e74c7bd505702", + "language": "JavaScript", + "lines": 177, + "truncated": false, + "block": 1, + "row": 1267 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nodemon/node_modules/ms/index.js", + "sha256": "e5f0b6a946a9b2b356a28557728410717df54ea2f599edb619f9839df6b7b0e9", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1170 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/noop-logger/lib/index.js", + "sha256": "79e9407fdf956a709aeb3cdb06e3a3253f899e01f0e4a266298a2ab735098c2e", + "language": "JavaScript", + "lines": 25, + "truncated": false, + "block": 1, + "row": 592 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/noop-logger/test/index.js", + "sha256": "4086022d3d089c260b6d8c2daafa2a389a2b90d4e3d82a79a943e2c26ddbc62b", + "language": "JavaScript", + "lines": 18, + "truncated": false, + "block": 1, + "row": 730 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nopt/bin/nopt.js", + "sha256": "4f67edd227c07ef2b913c6279c0e5feceeba67bd3d79c8b8def1000dc574bdbb", + "language": "JavaScript", + "lines": 44, + "truncated": false, + "block": 1, + "row": 937 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nopt/examples/my-program.js", + "sha256": "701c67a3301b077b1552ddc5d7ebac56b69aaaa4c55321d1a4e4a48078026db9", + "language": "JavaScript", + "lines": 30, + "truncated": false, + "block": 1, + "row": 876 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/nopt/lib/nopt.js", + "sha256": "1c91e5bce710e733effb80d3142f59c7a65c166cba69be613c67cf27b412d198", + "language": "JavaScript", + "lines": 552, + "truncated": false, + "block": 1, + "row": 1464 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/normalize-path/index.js", + "sha256": "202cf63677ddcac13e71d66d2e98c8f07aad10789845ade028e5be755b7abf3a", + "language": "JavaScript", + "lines": 35, + "truncated": false, + "block": 1, + "row": 873 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/normalize-url/index.d.ts", + "sha256": "268b91e005863b73e96181aff9eb64c308d324cde6e265180b416a316e88f4e2", + "language": "TypeScript", + "lines": 216, + "truncated": false, + "block": 1, + "row": 12134 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/normalize-url/index.js", + "sha256": "59bbab37991b44107da36b60643ea696ae53a196eff569148610dd9842d80893", + "language": "JavaScript", + "lines": 221, + "truncated": false, + "block": 1, + "row": 1334 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/npmlog/log.js", + "sha256": "569279cae3fbdadc4b5346b515a4699f2ef64533ad05f52aefdfbc8ef3d804f4", + "language": "JavaScript", + "lines": 309, + "truncated": false, + "block": 1, + "row": 1403 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/number-is-nan/index.js", + "sha256": "ae6aa905876623b7774309fa69f6fb23924760fe2fc2db63a514a468d4b8d8f8", + "language": "JavaScript", + "lines": 4, + "truncated": false, + "block": 1, + "row": 541 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/object-assign/index.js", + "sha256": "e02cb9714ef6e561e971fe400644330212f07ca86120587199470d8b759a4b7c", + "language": "JavaScript", + "lines": 90, + "truncated": false, + "block": 1, + "row": 1071 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/on-finished/index.js", + "sha256": "b0314432e091ecc1f7095ac5f49c6705d5fb559b0c3fd22e2d750ef59e76fa24", + "language": "JavaScript", + "lines": 196, + "truncated": false, + "block": 1, + "row": 1219 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/once/once.js", + "sha256": "3db73e347ecbdbafdf8d0db85145c877e133f5372e767360ef90c09f70ac5103", + "language": "JavaScript", + "lines": 42, + "truncated": false, + "block": 1, + "row": 839 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/p-cancelable/index.d.ts", + "sha256": "a4aa6eb2a56d8759bce946fef668541f303be73d83fbbdf45130fd3721a3936a", + "language": "TypeScript", + "lines": 168, + "truncated": false, + "block": 1, + "row": 12132 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/p-cancelable/index.js", + "sha256": "24d81b312ede8c0cd2a88893aa9cc3624d443c158584c20aeacfc005e7b7cb85", + "language": "JavaScript", + "lines": 103, + "truncated": false, + "block": 1, + "row": 1048 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/package-json/index.d.ts", + "sha256": "d2ba4654a0c7af267b65b80fda7bd3beea542692ced444530be9925d0989eae6", + "language": "TypeScript", + "lines": 199, + "truncated": false, + "block": 1, + "row": 12141 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/package-json/index.js", + "sha256": "73a523895879298b8feaa5302aa11a23a76c27e654c6bd414c156389f1323050", + "language": "JavaScript", + "lines": 115, + "truncated": false, + "block": 1, + "row": 1161 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/package-json/node_modules/semver/bin/semver.js", + "sha256": "a3ed56435cbd4b3f07a80c4a343edd86d787f89bf2cee0105bdf68cb653ba2a0", + "language": "JavaScript", + "lines": 174, + "truncated": false, + "block": 1, + "row": 1285 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/package-json/node_modules/semver/semver.js", + "sha256": "acfcb006e8cbfa5ec841829d60ecc5adb9c1012e39df0b7d2d29e44116001850", + "language": "JavaScript", + "lines": 1596, + "truncated": false, + "block": 1, + "row": 1532 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/parseurl/index.js", + "sha256": "811223d4a19492ccc642384dc84f0af4ad935557dfe8f63750d7ffd673e40f17", + "language": "JavaScript", + "lines": 158, + "truncated": false, + "block": 1, + "row": 1162 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/path-to-regexp/index.js", + "sha256": "c6fca7c07d17e676c51896b785576a118ccffa934959ddcee7ed106d3f8d4d01", + "language": "JavaScript", + "lines": 129, + "truncated": false, + "block": 1, + "row": 1198 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/picomatch/index.js", + "sha256": "5695ff5dfcd5a338a40630bd506056f2950bcb08fe1cc068519cbbfe60add480", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 531 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/picomatch/lib/constants.js", + "sha256": "62e99d2d2b35b08df788f855f735c70eed58722f43059b50b97dfb950aafdfce", + "language": "JavaScript", + "lines": 179, + "truncated": false, + "block": 1, + "row": 1271 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/picomatch/lib/parse.js", + "sha256": "034d3f8f74bf91a226d57c0019dbdcb9d704e172ba00f8dd810ca01cb43d3d79", + "language": "JavaScript", + "lines": 1078, + "truncated": false, + "block": 1, + "row": 1510 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/picomatch/lib/picomatch.js", + "sha256": "316e8e6c5cdd9d6e57ae5476ec0fe7bdae32ed31277fcaa11ba7b9d14d1deefc", + "language": "JavaScript", + "lines": 339, + "truncated": false, + "block": 1, + "row": 1422 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/picomatch/lib/scan.js", + "sha256": "2cda08682679f24c89c3a47bc980e7ff69709b4de55fff5ba92ab17b5275a741", + "language": "JavaScript", + "lines": 383, + "truncated": false, + "block": 1, + "row": 1413 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/picomatch/lib/utils.js", + "sha256": "809fc29cf35ab0aa76b99cad29182f62c0ae598902481d10f9868eaef71981ee", + "language": "JavaScript", + "lines": 64, + "truncated": false, + "block": 1, + "row": 1038 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/port/bench/io-netsend.js", + "sha256": "37b53a5f86384e9032a20eff3e7a8bbc2b15ffe075bf704c560c81162a371daf", + "language": "JavaScript", + "lines": 23, + "truncated": false, + "block": 1, + "row": 660 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/port/bench/io-print.js", + "sha256": "2811e92794427b5f7d7fac2e0744f101626ac002af621ecc470dd68f1fc247bb", + "language": "JavaScript", + "lines": 24, + "truncated": false, + "block": 1, + "row": 678 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/port/examples/manipulation/client.js", + "sha256": "7d326081e808ff4bd321e6982aaab2d1d2c2c9f148c6d7cc0038cd572b94f5aa", + "language": "JavaScript", + "lines": 53, + "truncated": false, + "block": 1, + "row": 950 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/port/examples/manipulation/server.js", + "sha256": "1eafbe451051c4326b77efac0d182a56289aa4c7e6124807abe028c519e3b0d1", + "language": "JavaScript", + "lines": 87, + "truncated": false, + "block": 1, + "row": 1080 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/port/examples/simple/test.js", + "sha256": "083d2cbc5cb94fd79f00382bb588d5bf6b08f39b7ead73dd0eb9b04cc1783548", + "language": "JavaScript", + "lines": 23, + "truncated": false, + "block": 1, + "row": 676 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/port/examples/testing/division.js", + "sha256": "a85339414dc5ad1391e73f1b3dd9613a447e475aed53a36c7ba1033509a1d357", + "language": "JavaScript", + "lines": 92, + "truncated": false, + "block": 1, + "row": 1057 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/port/examples/visualization/client.js", + "sha256": "d90980d40651005ee003b507a8379bcb0ae648243241bc11a8ae4770becb47c9", + "language": "JavaScript", + "lines": 24, + "truncated": false, + "block": 1, + "row": 704 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/port/examples/visualization/server.js", + "sha256": "de00568682680cb5b92d70c7d0d71da5706b9c67fdd72438387e3ea7c29547dc", + "language": "JavaScript", + "lines": 93, + "truncated": false, + "block": 1, + "row": 1077 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/port/port.js", + "sha256": "1d6919a70598b8faf4502a2dc8dd3bfb152dbfa2cdcb994d5a2ba3054fb110f2", + "language": "JavaScript", + "lines": 149, + "truncated": false, + "block": 1, + "row": 1260 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/port/test/connect.js", + "sha256": "0ae3a54cf1fb40efc95378f28cddab893e3ee76db1c02886347a7c40a74376be", + "language": "JavaScript", + "lines": 454, + "truncated": false, + "block": 1, + "row": 1419 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/port/test/create.js", + "sha256": "80043ac0995aad102f877d253c542581196669c9bb78a1e0b3a94a7160222a55", + "language": "JavaScript", + "lines": 327, + "truncated": false, + "block": 1, + "row": 1349 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/port/test/event.js", + "sha256": "5acdcc24679abe5f1f1ec70e3b8fba3ee473ab3a70d3d6b37456c8b7383d6821", + "language": "JavaScript", + "lines": 131, + "truncated": false, + "block": 1, + "row": 1135 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/port/test/flags.js", + "sha256": "5f9353a28ab6edfa765d3f3c7c06b8e11e5f41c713e304bf18274ea76fcd24c3", + "language": "JavaScript", + "lines": 66, + "truncated": false, + "block": 1, + "row": 917 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/prebuild-install/asset.js", + "sha256": "eaf588f4fbc5113f0c6fdf0ebb1c4639aac8006a61edfb786ef9623c0910dfab", + "language": "JavaScript", + "lines": 48, + "truncated": false, + "block": 1, + "row": 920 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/prebuild-install/bin.js", + "sha256": "92c4524c29925537d081286b0ac958f874aa800f167400fd87cea95c42e0a86d", + "language": "JavaScript", + "lines": 83, + "truncated": false, + "block": 1, + "row": 1119 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/prebuild-install/download.js", + "sha256": "821d285e38d169367c2a789c33bbb8dca45842b485ae8ca7802221b7d177529b", + "language": "JavaScript", + "lines": 130, + "truncated": false, + "block": 1, + "row": 1216 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/prebuild-install/error.js", + "sha256": "0df3fa571a7fb2563113d8a7ea83c79e769830abbe7b5d5d9cd430c3ea893f68", + "language": "JavaScript", + "lines": 14, + "truncated": false, + "block": 1, + "row": 637 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/prebuild-install/index.js", + "sha256": "51c1dae166a7da3717cc50ba36118c12f5351ff07a7d23d6dd53828bd857f5b6", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 520 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/prebuild-install/log.js", + "sha256": "e95a3a03d2aa0a597e4e51b71a183d4492612febd901aa72b8378e7c35c88690", + "language": "JavaScript", + "lines": 25, + "truncated": false, + "block": 1, + "row": 734 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/prebuild-install/proxy.js", + "sha256": "1e65ceff565db5417e2c7bedbbef68e3810e8825e582a2192ce79ee11ad7baf1", + "language": "JavaScript", + "lines": 38, + "truncated": false, + "block": 1, + "row": 916 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/prebuild-install/rc.js", + "sha256": "bea01e8171c2f548e6f3558237f2e53c7bc2f6a2905542bd671e32ee464fb411", + "language": "JavaScript", + "lines": 60, + "truncated": false, + "block": 1, + "row": 1043 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/prebuild-install/util.js", + "sha256": "5ac240a7f88ad5aa79115fddd7a82e2ef33025a50a378f94f4d53bcd52dff728", + "language": "JavaScript", + "lines": 116, + "truncated": false, + "block": 1, + "row": 1212 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/prepend-http/index.js", + "sha256": "684fa9c4f5ccd39de740e404fec3466fd84b666efed6a09307cd11b54bc3db85", + "language": "JavaScript", + "lines": 15, + "truncated": false, + "block": 1, + "row": 653 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/process-nextick-args/index.js", + "sha256": "90ba524851f721e8aced79870d6d6a733cd3939b293a83e2d04417812a8ba330", + "language": "JavaScript", + "lines": 45, + "truncated": false, + "block": 1, + "row": 891 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/proxy-addr/index.js", + "sha256": "c586f959f09961edc6e261d9404455fce40998a221f71d44833bb4b12796c33c", + "language": "JavaScript", + "lines": 327, + "truncated": false, + "block": 1, + "row": 1328 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/pstree.remy/lib/index.js", + "sha256": "36210b109fbf29152744a5bc509b185b813b480a7e806ebdfd77085cca53cc60", + "language": "JavaScript", + "lines": 37, + "truncated": false, + "block": 1, + "row": 773 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/pstree.remy/lib/tree.js", + "sha256": "f19adbb875526fc13b94a2ead755dc80c4c781ec47c8850d67d10645b782b4b0", + "language": "JavaScript", + "lines": 37, + "truncated": false, + "block": 1, + "row": 800 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/pstree.remy/lib/utils.js", + "sha256": "cc9f33a45159b065abad138733f069855f9991ad95aa3cfef8584c1e0da50465", + "language": "JavaScript", + "lines": 53, + "truncated": false, + "block": 1, + "row": 907 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/pstree.remy/tests/fixtures/index.js", + "sha256": "58c4d9696cf000428c499dbb516499fe0558104b67a61fc947ed1a45065d18ce", + "language": "JavaScript", + "lines": 13, + "truncated": false, + "block": 1, + "row": 604 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/pstree.remy/tests/index.test.js", + "sha256": "a1a0af2439ed982d1efd8f854de2ab55199c3a6b15913254b3fb62720e777e88", + "language": "JavaScript", + "lines": 51, + "truncated": false, + "block": 1, + "row": 959 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/pump/index.js", + "sha256": "60ae01725219c69e086e0cfe6a6da1f94a9bafcfbf528460b6e04b7b6d983165", + "language": "JavaScript", + "lines": 82, + "truncated": false, + "block": 1, + "row": 1089 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/pump/test-browser.js", + "sha256": "bfdd31d421d9975519122715df56e81662abf283e386bda1d7141ef277f70191", + "language": "JavaScript", + "lines": 66, + "truncated": false, + "block": 1, + "row": 908 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/pump/test-node.js", + "sha256": "04b7b585e056fccea011f300815d9f19afb190b7c88f5bc575aeac8b5dd00ded", + "language": "JavaScript", + "lines": 53, + "truncated": false, + "block": 1, + "row": 863 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/pupa/index.d.ts", + "sha256": "01d8eb04ffbf5e877a8e2ca12ab2775bf1bc85e9e405859c148e2eaf1ca11337", + "language": "TypeScript", + "lines": 32, + "truncated": false, + "block": 1, + "row": 12049 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/pupa/index.js", + "sha256": "cf2e02d66c2eca332279570b44f7ead4b32004dd9a5066f11fcae13d09768e14", + "language": "JavaScript", + "lines": 39, + "truncated": false, + "block": 1, + "row": 896 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/qs/dist/qs.js", + "sha256": "085ea530c850a31be36cfafdb09136f97ceabe493b6ab9b96f2de3912ab4fe25", + "language": "JavaScript", + "lines": 782, + "truncated": false, + "block": 1, + "row": 1503 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/qs/lib/formats.js", + "sha256": "fa46703aec014a01b57df0e0d3d42ff4d773cccc58e5fabd292ac61b25f731f6", + "language": "JavaScript", + "lines": 18, + "truncated": false, + "block": 1, + "row": 655 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/qs/lib/index.js", + "sha256": "8f4e02eef6ccc43f2b7448c18ae209281c8e9af9807cad491df67450e3817a95", + "language": "JavaScript", + "lines": 11, + "truncated": false, + "block": 1, + "row": 578 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/qs/lib/parse.js", + "sha256": "cf791be1811bd18d699567fe7ca6aa0961ae237644a41883765eab2601ef58f0", + "language": "JavaScript", + "lines": 242, + "truncated": false, + "block": 1, + "row": 1401 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/qs/lib/stringify.js", + "sha256": "7cbb020ea4d2e31dcbfb07d2ca22fd80397579eebcffe02148cff7745fd93de3", + "language": "JavaScript", + "lines": 269, + "truncated": false, + "block": 1, + "row": 1394 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/qs/lib/utils.js", + "sha256": "d6d87593414ca65949b037e91e9851314f6d1b043b9fc679787a3d6dd6db4375", + "language": "JavaScript", + "lines": 230, + "truncated": false, + "block": 1, + "row": 1341 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/qs/test/index.js", + "sha256": "d810ca4739cc60876ce8fe5ca755b478cf68c0400cf7fe6518169230a6a94f5e", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 1, + "row": 540 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/qs/test/parse.js", + "sha256": "6e1d1f2876f1b99309518378b5ab57a3055b619f6882b26b52a227590b759a53", + "language": "JavaScript", + "lines": 676, + "truncated": false, + "block": 1, + "row": 1513 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/qs/test/stringify.js", + "sha256": "ae1602f6456ffd2a89a781727f22355458592c7c9b45170abe4a5b5c386f46ae", + "language": "JavaScript", + "lines": 679, + "truncated": false, + "block": 1, + "row": 1500 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/qs/test/utils.js", + "sha256": "bdab610f30f97bdb20b9cf79d39927186dffaa524abc952d3e6831aa8f6777ed", + "language": "JavaScript", + "lines": 136, + "truncated": false, + "block": 1, + "row": 1299 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/range-parser/index.js", + "sha256": "38786526d000475300728db07455aa21d1e37b0f24e48fbc4cb30136ae30b07b", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1165 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/raw-body/index.d.ts", + "sha256": "3d05b353d9341c0dbff6d21f18490e346c3b661f5fc9d7f36e0e3fe5f940699c", + "language": "TypeScript", + "lines": 87, + "truncated": false, + "block": 1, + "row": 12101 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/raw-body/index.js", + "sha256": "ce1d9e7768f499df276dcc57945ca0c55201aa92f982889e868e25eec8faad50", + "language": "JavaScript", + "lines": 286, + "truncated": false, + "block": 1, + "row": 1335 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/rc/browser.js", + "sha256": "6c04801604d01bcc3c9b6db980749bdbd543205af5fef979e6adfc4a835b66c5", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 1, + "row": 560 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/rc/cli.js", + "sha256": "82383f5748af5f9380dbcde8f0166088614bf024e25bdbe073bb87cd385336ba", + "language": "JavaScript", + "lines": 4, + "truncated": false, + "block": 1, + "row": 550 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/rc/index.js", + "sha256": "7a4c19d1025d2669723dd2a939ced7d556d815eedfff62bf288970365b8b26dc", + "language": "JavaScript", + "lines": 53, + "truncated": false, + "block": 1, + "row": 978 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/rc/lib/utils.js", + "sha256": "3eba35eafd078a2c4843a11000c06443b5d8b2fea3b682aae20daeea5be66cd2", + "language": "JavaScript", + "lines": 104, + "truncated": false, + "block": 1, + "row": 1155 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/rc/test/ini.js", + "sha256": "de40b4f5d4f8d7dfeeaae96d767c512e3cc3a4bfeee8780e608306ac36284a6d", + "language": "JavaScript", + "lines": 16, + "truncated": false, + "block": 1, + "row": 614 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/rc/test/nested-env-vars.js", + "sha256": "5b00a5b450b52b4c5d4432093665c20e62ad39126aed8da24cddc3e6c7871919", + "language": "JavaScript", + "lines": 50, + "truncated": false, + "block": 1, + "row": 961 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/rc/test/test.js", + "sha256": "1e277a1cdda596747a7d3d7d7995b43eb104901ce9f0ecf234dc6e625e2ebe6b", + "language": "JavaScript", + "lines": 59, + "truncated": false, + "block": 1, + "row": 911 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/readable-stream/duplex-browser.js", + "sha256": "b492b180e158a495afa7b394de1440e037c5d60524bb2fce839aeb690e6ff968", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 526 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/readable-stream/duplex.js", + "sha256": "16475035143997e924dc3f41af6fd657cf55c5843f415f00b155c20891da8a5b", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 521 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/readable-stream/lib/_stream_duplex.js", + "sha256": "fd17d6a92dd9ba004c85f8e364b2771af10d012a83766437447dbae63879fa6b", + "language": "JavaScript", + "lines": 131, + "truncated": false, + "block": 1, + "row": 1238 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/readable-stream/lib/_stream_passthrough.js", + "sha256": "bf61450b1ff5f94fea9d46665e931119642034c903e63cc224b4c96472eed4d4", + "language": "JavaScript", + "lines": 47, + "truncated": false, + "block": 1, + "row": 1018 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/readable-stream/lib/_stream_readable.js", + "sha256": "f0e34561f8b2138c0f156d54f552658f4d47400afa4cd5c486923de2e9878c71", + "language": "JavaScript", + "lines": 1019, + "truncated": false, + "block": 1, + "row": 1518 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/readable-stream/lib/_stream_transform.js", + "sha256": "56220d9dd58b976f1739bfc85948b267d79772ba23672ff402d13b6b3fcf4e40", + "language": "JavaScript", + "lines": 214, + "truncated": false, + "block": 1, + "row": 1382 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/readable-stream/lib/_stream_writable.js", + "sha256": "3bea15e60141038162629b409fd21f2675e793da947e3afad0fb66a26d427299", + "language": "JavaScript", + "lines": 687, + "truncated": false, + "block": 1, + "row": 1486 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/readable-stream/lib/internal/streams/BufferList.js", + "sha256": "8b3ad3a63761a51e9668f88198b218379294019c77d3d8344b2e2f8d89a3e0b3", + "language": "JavaScript", + "lines": 79, + "truncated": false, + "block": 1, + "row": 1059 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/readable-stream/lib/internal/streams/destroy.js", + "sha256": "72fa9f60ff48129143de2e1c1f624cef0d7f41ad55c7d60d94d1014635299607", + "language": "JavaScript", + "lines": 74, + "truncated": false, + "block": 1, + "row": 1033 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/readable-stream/lib/internal/streams/stream-browser.js", + "sha256": "72d46a15491627d8fb1489a47d03583cfe5c21902918016ab532b53e615e5a9a", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 524 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/readable-stream/lib/internal/streams/stream.js", + "sha256": "1e7903927df33aadb3659ecce55266c9c851da65ce6c8b723a60a305c1c5422c", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 516 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/readable-stream/passthrough.js", + "sha256": "809dbc03b4c312355ff74eb14b2ccc77267ee71e04f519f437eb4b203407c4b7", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 525 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/readable-stream/readable-browser.js", + "sha256": "ec8e6f4e484d5269bc134752e11770b66b6be3a470217c2a0166e977965f53c6", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 1, + "row": 636 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/readable-stream/readable.js", + "sha256": "a1efa3fa06393aff652f3529ea1b1bc32134d49eb794b23272fb0ba13d214550", + "language": "JavaScript", + "lines": 19, + "truncated": false, + "block": 1, + "row": 763 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/readable-stream/transform.js", + "sha256": "155f794c5c789568b7bc632cd37f28b9064890e887bfab96a4393100218d4230", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 523 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/readable-stream/writable-browser.js", + "sha256": "427bae9a6a026082e46acb500da48b270234ebc2a1ded1315b49eccfa6311c61", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 528 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/readable-stream/writable.js", + "sha256": "74cbbdc5d60e1ee6560d2850515b68c3d6b39d9b2f32346aac1386b031c2a661", + "language": "JavaScript", + "lines": 8, + "truncated": false, + "block": 1, + "row": 581 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/readdirp/index.d.ts", + "sha256": "25cc2353fb94588bbf6c1393006ff4155ce567dd60abceafc2940f99e43e3519", + "language": "TypeScript", + "lines": 43, + "truncated": false, + "block": 1, + "row": 12068 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/readdirp/index.js", + "sha256": "1e0b5e60b5ce737d30d3785de83a691e470284b713b5e59ae98fe39820b783c9", + "language": "JavaScript", + "lines": 282, + "truncated": false, + "block": 1, + "row": 1402 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/registry-auth-token/base64.js", + "sha256": "e6337ddf852bd8654a5c135592f1c13e9a324d87340006f0d393f47b0bca14c9", + "language": "JavaScript", + "lines": 12, + "truncated": false, + "block": 1, + "row": 597 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/registry-auth-token/index.js", + "sha256": "ace40f43e54971b69b405346104c886868c8548095580a378c54057a78ac7a2e", + "language": "JavaScript", + "lines": 142, + "truncated": false, + "block": 1, + "row": 1229 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/registry-auth-token/registry-url.js", + "sha256": "cf2ea929f2d84fb429946a95362ec674fd7774fc8cdae0f83092eedc3ec1c772", + "language": "JavaScript", + "lines": 5, + "truncated": false, + "block": 1, + "row": 584 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/registry-url/index.d.ts", + "sha256": "0fe853aa9e538f751b1aa72585585bdea648b467d2ecea247ad449d667573523", + "language": "TypeScript", + "lines": 33, + "truncated": false, + "block": 1, + "row": 12063 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/registry-url/index.js", + "sha256": "eebeac1f3551219ac47123ae025e63a988d4f10eb911b071836c0e27360203f2", + "language": "JavaScript", + "lines": 12, + "truncated": false, + "block": 1, + "row": 661 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/responselike/src/index.js", + "sha256": "a154ca976934d0c3500f7f70d7d6f5fd5cf28eee82ceb8026f9c02064816b5cc", + "language": "JavaScript", + "lines": 34, + "truncated": false, + "block": 1, + "row": 787 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/safe-buffer/index.d.ts", + "sha256": "5e379df3d61561c2ed7789b5995b9ba2143bbba21a905e2381e16efe7d1fa424", + "language": "TypeScript", + "lines": 187, + "truncated": false, + "block": 1, + "row": 12158 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/safe-buffer/index.js", + "sha256": "d58af21cb0518864d0c505742d1af71e5b5e1f142f4c0f27353aa0f431a616d4", + "language": "JavaScript", + "lines": 62, + "truncated": false, + "block": 1, + "row": 982 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/safer-buffer/dangerous.js", + "sha256": "1dc2900bcc8ffc375af0d2fc99a03ecad2dcbb85d278fbf26982e87707bea53f", + "language": "JavaScript", + "lines": 58, + "truncated": false, + "block": 1, + "row": 974 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/safer-buffer/safer.js", + "sha256": "37f9716144105051ab302f6a0c30a52ff5de7269b9e1173ac22be798fc11ccad", + "language": "JavaScript", + "lines": 77, + "truncated": false, + "block": 1, + "row": 1073 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/safer-buffer/tests.js", + "sha256": "511906fdf6a233c84a9216065d1701dbfd84f380fbd495ae1cf5a002370b9885", + "language": "JavaScript", + "lines": 406, + "truncated": false, + "block": 1, + "row": 1471 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/semver-diff/index.d.ts", + "sha256": "af68c17117dab4cc9387499e195148aaab08c014372b9477480fa1c3d82bf316", + "language": "TypeScript", + "lines": 58, + "truncated": false, + "block": 1, + "row": 12071 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/semver-diff/index.js", + "sha256": "2c24a892f6eb33cac61f2674697c35f83c8f2c51d242740f5aad4bf1ce4c8f5d", + "language": "JavaScript", + "lines": 13, + "truncated": false, + "block": 1, + "row": 608 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/semver-diff/node_modules/semver/bin/semver.js", + "sha256": "a3ed56435cbd4b3f07a80c4a343edd86d787f89bf2cee0105bdf68cb653ba2a0", + "language": "JavaScript", + "lines": 174, + "truncated": false, + "block": 1, + "row": 1285 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/semver-diff/node_modules/semver/semver.js", + "sha256": "acfcb006e8cbfa5ec841829d60ecc5adb9c1012e39df0b7d2d29e44116001850", + "language": "JavaScript", + "lines": 1596, + "truncated": false, + "block": 1, + "row": 1532 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/semver/semver.js", + "sha256": "161e134793e0789620e9c3257ea47b28049b977f08e817dcfa9e2e30cca8bdf4", + "language": "JavaScript", + "lines": 1483, + "truncated": false, + "block": 1, + "row": 1526 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/send/index.js", + "sha256": "f4145dfc482fba92177bd81092fdf6ebe74c919ea3f2a26713bfeb2a1c065c40", + "language": "JavaScript", + "lines": 1129, + "truncated": false, + "block": 1, + "row": 1498 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/send/node_modules/ms/index.js", + "sha256": "7c9083207b648e648c4d076e7bd7d85af73daae58738199eb8c20a465dfdcd19", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1171 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/serial/index.js", + "sha256": "fea630ed4a4f17aeec4132f66db7512a6af1ff46e793df448875d5cd40439c90", + "language": "JavaScript", + "lines": 8, + "truncated": false, + "block": 1, + "row": 554 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/serial/lib/ParallelRunner.js", + "sha256": "97cb576302f206d32ed834bc8bfc77b4cee0a2a6920229ac8b36307cba0b2dd5", + "language": "JavaScript", + "lines": 100, + "truncated": false, + "block": 1, + "row": 975 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/serial/lib/SerialRunner.js", + "sha256": "a4ec4b5b7eb2e33b85648173374bbbda2ae37be68e350f6ad9423e76911e647e", + "language": "JavaScript", + "lines": 110, + "truncated": false, + "block": 1, + "row": 1044 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/serial/test/parallelTest.js", + "sha256": "3e7aca30dc9e6c82fc40fbc4ac5704a1ca3aeef0d596ed463de5a7ffb5d1a13c", + "language": "JavaScript", + "lines": 64, + "truncated": false, + "block": 1, + "row": 847 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/serial/test/serialTest.js", + "sha256": "40f591f84d28f940d0dd5805991d2e8843eb9d8d7c4b9fca398e057c79e6b562", + "language": "JavaScript", + "lines": 105, + "truncated": false, + "block": 1, + "row": 1061 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/serialport/lib/index.js", + "sha256": "dcab9f772274dd761ec1bff8ffb8372850f0586b2695df3ceb6280fff702c4a5", + "language": "JavaScript", + "lines": 15, + "truncated": false, + "block": 1, + "row": 606 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/serialport/lib/parsers.js", + "sha256": "3d061effea577e0ad07e248f43b8c2d074f83e00265175163c2ba3b6ac95e6fa", + "language": "JavaScript", + "lines": 9, + "truncated": false, + "block": 1, + "row": 658 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/serialport/node_modules/debug/src/browser.js", + "sha256": "4e3dc6d0e1db58a0d74206b443f35582d3b717be56a0f6d030c34af6c2ad9f62", + "language": "JavaScript", + "lines": 269, + "truncated": false, + "block": 1, + "row": 1329 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/serialport/node_modules/debug/src/common.js", + "sha256": "ae6855e9f5ef6687aa8f76e69dd1854f1b99985146434daff310150083cfde02", + "language": "JavaScript", + "lines": 261, + "truncated": false, + "block": 1, + "row": 1332 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/serialport/node_modules/debug/src/index.js", + "sha256": "aa127ff1752b7d9c7415c5c7bb6994d9aa722b81bcbcab4bd48316b013d23bf3", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 616 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/serialport/node_modules/debug/src/node.js", + "sha256": "f237adcb52849de7c128f57e0468b52353c529a6c8341810477c0e7144359559", + "language": "JavaScript", + "lines": 263, + "truncated": false, + "block": 1, + "row": 1283 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/serialport/node_modules/ms/index.js", + "sha256": "55986972f5f3c9446f876c576e1cd30fd4f04cd26527efbb5ad834637c740e4c", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1169 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/serialport/test.js", + "sha256": "9302a7612bfe5080d8830dc61ba0b23a768ef35ead8dd64dac02c39b0eb2c255", + "language": "JavaScript", + "lines": 8, + "truncated": false, + "block": 1, + "row": 583 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/serve-static/index.js", + "sha256": "768d6407e86ba974e7b8a0e79625e76a932b1f2503207c87f871fcf98be21b1e", + "language": "JavaScript", + "lines": 210, + "truncated": false, + "block": 1, + "row": 1277 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/set-blocking/index.js", + "sha256": "8b238f1de62bb2a7b35a9e6b0364a64ce0f357cb63251580ff5a25429712e1d1", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 1, + "row": 589 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/setprototypeof/index.d.ts", + "sha256": "594108e052a71fbabf137a1139736186af6e437a255705e99f8c666f4d2af4c4", + "language": "TypeScript", + "lines": 2, + "truncated": false, + "block": 1, + "row": 12009 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/setprototypeof/index.js", + "sha256": "62193f6768a098bc245f88a86a955d50643f68537d181945f6eec5792e4a294b", + "language": "JavaScript", + "lines": 17, + "truncated": false, + "block": 1, + "row": 651 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/setprototypeof/test/index.js", + "sha256": "44bed5fcccb6c8f6cd92ff4bc034005b9d46ba560c572979944772555d4f2585", + "language": "JavaScript", + "lines": 24, + "truncated": false, + "block": 1, + "row": 736 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/signal-exit/index.js", + "sha256": "b9ccc2e42e309e1f35e056d82544685f73556ee2f71e594f900d4846442f6255", + "language": "JavaScript", + "lines": 163, + "truncated": false, + "block": 1, + "row": 1243 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/signal-exit/signals.js", + "sha256": "ae538fdae683d6fa2e14579da06df10fb7a66378cfa50971956fb68c2c86c727", + "language": "JavaScript", + "lines": 53, + "truncated": false, + "block": 1, + "row": 941 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/simple-concat/index.js", + "sha256": "fbd2a589ece8138da87d9a5e3d537afbbc32f08582bec0939cd3c494002259a4", + "language": "JavaScript", + "lines": 15, + "truncated": false, + "block": 1, + "row": 657 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/simple-concat/test/basic.js", + "sha256": "855070c71eef83b431ea9e87f642d147880fa08eeb47eca8c2e647af3f287011", + "language": "JavaScript", + "lines": 41, + "truncated": false, + "block": 1, + "row": 788 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/simple-get/index.js", + "sha256": "b3d1320c6169ffaa2596b08e48529eb526945089a569326cb898cdc50dad654b", + "language": "JavaScript", + "lines": 99, + "truncated": false, + "block": 1, + "row": 1213 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/simple-get/node_modules/decompress-response/index.d.ts", + "sha256": "75e0e9ccb1233b2897aada4bf477a030e247bf2ccaf4b978ed42db225ac8edcc", + "language": "TypeScript", + "lines": 29, + "truncated": false, + "block": 1, + "row": 12057 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/simple-get/node_modules/decompress-response/index.js", + "sha256": "a9f58e84017f49d7c3932d2e46f5dede98b19e38f2c8f0c694d3be586769afb9", + "language": "JavaScript", + "lines": 40, + "truncated": false, + "block": 1, + "row": 872 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/simple-get/node_modules/mimic-response/index.d.ts", + "sha256": "7054578d88c2cf4daa4f57097bb304927aa632d638801acc54ca3ed672ce1fdf", + "language": "TypeScript", + "lines": 17, + "truncated": false, + "block": 1, + "row": 12039 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/simple-get/node_modules/mimic-response/index.js", + "sha256": "954e75eb633f92df1143ef3a9f199df54c8f42cecd65c00a397aa890099df60b", + "language": "JavaScript", + "lines": 38, + "truncated": false, + "block": 1, + "row": 804 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io-adapter/dist/index.d.ts", + "sha256": "8ef692b43546bba3f743f404e14f99d211c587190aad12e736d59701ae5edba4", + "language": "TypeScript", + "lines": 83, + "truncated": false, + "block": 1, + "row": 12100 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io-adapter/dist/index.js", + "sha256": "711a9b895ac6d92e747ec2b68042eff1f126c837a545d24e53530657b2aec74e", + "language": "JavaScript", + "lines": 171, + "truncated": false, + "block": 1, + "row": 1289 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io-parser/dist/binary.d.ts", + "sha256": "f233d56f423b86ffc2039c61ca75a3a6a8aa3a943cf1ff29cc160486185ecb9c", + "language": "TypeScript", + "lines": 20, + "truncated": false, + "block": 1, + "row": 12043 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io-parser/dist/binary.js", + "sha256": "b455bebe40cab935b7d13c85e3ed04b7235c244aaace8284aa42972021de6c34", + "language": "JavaScript", + "lines": 80, + "truncated": false, + "block": 1, + "row": 1146 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io-parser/dist/index.d.ts", + "sha256": "6ce9c4c7d976960a7f14dfe40e26c357bcab9405eb2eea38f79760ed4f323512", + "language": "TypeScript", + "lines": 72, + "truncated": false, + "block": 1, + "row": 12084 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io-parser/dist/index.js", + "sha256": "2971c85683dbe8a8a2e2b8c5eb5b5771f1fc30d69700ac55b167003a55b7c282", + "language": "JavaScript", + "lines": 280, + "truncated": false, + "block": 1, + "row": 1411 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io-parser/dist/is-binary.d.ts", + "sha256": "1da3b6a36b83b8b723f6fbf7bed731a79b60a735c31893ccef57cb5e68283b10", + "language": "TypeScript", + "lines": 7, + "truncated": false, + "block": 1, + "row": 12013 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io-parser/dist/is-binary.js", + "sha256": "5f6c79dc87d7fa32cb4165d02313018c605881e2ff26380d4742a4fd3c0161a2", + "language": "JavaScript", + "lines": 55, + "truncated": false, + "block": 1, + "row": 1017 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io-parser/node_modules/debug/src/browser.js", + "sha256": "4e3dc6d0e1db58a0d74206b443f35582d3b717be56a0f6d030c34af6c2ad9f62", + "language": "JavaScript", + "lines": 269, + "truncated": false, + "block": 1, + "row": 1329 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io-parser/node_modules/debug/src/common.js", + "sha256": "ae6855e9f5ef6687aa8f76e69dd1854f1b99985146434daff310150083cfde02", + "language": "JavaScript", + "lines": 261, + "truncated": false, + "block": 1, + "row": 1332 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io-parser/node_modules/debug/src/index.js", + "sha256": "aa127ff1752b7d9c7415c5c7bb6994d9aa722b81bcbcab4bd48316b013d23bf3", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 616 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io-parser/node_modules/debug/src/node.js", + "sha256": "f237adcb52849de7c128f57e0468b52353c529a6c8341810477c0e7144359559", + "language": "JavaScript", + "lines": 263, + "truncated": false, + "block": 1, + "row": 1283 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io-parser/node_modules/ms/index.js", + "sha256": "55986972f5f3c9446f876c576e1cd30fd4f04cd26527efbb5ad834637c740e4c", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1169 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io/client-dist/socket.io.js", + "sha256": "82b51abe651b56984f96660dba55953434657fc4469a6523c68c71aa0d23d324", + "language": "JavaScript", + "lines": 5870, + "truncated": false, + "block": 1, + "row": 1551 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io/client-dist/socket.io.min.js", + "sha256": "6f3185e51a05b16feb5bd5da6c6d35b46e07fa673a682205334664d94152fd8d", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 1, + "row": 1536 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io/client-dist/socket.io.msgpack.min.js", + "sha256": "8d9a5a6d36012efd82694540944eb1bdd607c45e629b441e9e4df0da4fe73672", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 1, + "row": 1537 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io/dist/client.d.ts", + "sha256": "3b89266efc5885741d1b7feb49d1e73d5836e3d0fba14c4d8c2eb0f791822019", + "language": "TypeScript", + "lines": 109, + "truncated": false, + "block": 1, + "row": 12103 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io/dist/client.js", + "sha256": "b9b218e47da4451f7d06ad37a8347ce8fe81585e0018aa6bcc7401145a7e0a5d", + "language": "JavaScript", + "lines": 266, + "truncated": false, + "block": 1, + "row": 1380 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io/dist/index.d.ts", + "sha256": "694e3a2b053833b5d27f35dd198c9d3aa6879f64c1085d0cf6044f6f12b86d82", + "language": "TypeScript", + "lines": 365, + "truncated": false, + "block": 1, + "row": 12164 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io/dist/index.js", + "sha256": "6869b2df2e053854239efce8aee9462c2ced3b49ad2f9d150da9324c86d3d63a", + "language": "JavaScript", + "lines": 470, + "truncated": false, + "block": 1, + "row": 1460 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io/dist/namespace.d.ts", + "sha256": "58bf48c53d15b8eacd23f365883e0c371a92c9f3732da0d46d2fa32a228036b5", + "language": "TypeScript", + "lines": 135, + "truncated": false, + "block": 1, + "row": 12118 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io/dist/namespace.js", + "sha256": "5ee267ba97ead6d1df60a32e0377e3732fcbde317866017d85fed24807927897", + "language": "JavaScript", + "lines": 255, + "truncated": false, + "block": 1, + "row": 1367 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io/dist/parent-namespace.d.ts", + "sha256": "6193e5e23f161047d18a158521a86c66fd5b8f6426678e1600adfb6195dff6b3", + "language": "TypeScript", + "lines": 13, + "truncated": false, + "block": 1, + "row": 12028 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io/dist/parent-namespace.js", + "sha256": "bd7c66772e6357300aa5bb06913d52c360aac8eea0a6ae1d8f71c27d94257691", + "language": "JavaScript", + "lines": 37, + "truncated": false, + "block": 1, + "row": 921 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io/dist/socket.d.ts", + "sha256": "9620e3e4560777fe3d0aca6c191f72936f76ac3b034ae9b45194b9fb4dadf784", + "language": "TypeScript", + "lines": 324, + "truncated": false, + "block": 1, + "row": 12155 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io/dist/socket.js", + "sha256": "c6c69d6edff4226dcbedab2ed4e909bc951317798816a79327d8c22c87cf5073", + "language": "JavaScript", + "lines": 559, + "truncated": false, + "block": 1, + "row": 1466 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io/node_modules/debug/src/browser.js", + "sha256": "4e3dc6d0e1db58a0d74206b443f35582d3b717be56a0f6d030c34af6c2ad9f62", + "language": "JavaScript", + "lines": 269, + "truncated": false, + "block": 1, + "row": 1329 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io/node_modules/debug/src/common.js", + "sha256": "ae6855e9f5ef6687aa8f76e69dd1854f1b99985146434daff310150083cfde02", + "language": "JavaScript", + "lines": 261, + "truncated": false, + "block": 1, + "row": 1332 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io/node_modules/debug/src/index.js", + "sha256": "aa127ff1752b7d9c7415c5c7bb6994d9aa722b81bcbcab4bd48316b013d23bf3", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 616 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io/node_modules/debug/src/node.js", + "sha256": "f237adcb52849de7c128f57e0468b52353c529a6c8341810477c0e7144359559", + "language": "JavaScript", + "lines": 263, + "truncated": false, + "block": 1, + "row": 1283 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/socket.io/node_modules/ms/index.js", + "sha256": "55986972f5f3c9446f876c576e1cd30fd4f04cd26527efbb5ad834637c740e4c", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1169 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/statuses/index.js", + "sha256": "4f8b0e8e9e9cff773ba540daf8a065d9b19b2ee1d108acc0172614f81b11ef0b", + "language": "JavaScript", + "lines": 113, + "truncated": false, + "block": 1, + "row": 1065 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/string-width/index.d.ts", + "sha256": "08f234e8871dacf59e1f194fd83c11d002d8d4d488f7be138900755e3e637a24", + "language": "TypeScript", + "lines": 29, + "truncated": false, + "block": 1, + "row": 12056 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/string-width/index.js", + "sha256": "70f6d697eb3a55d36cacb1e31fd476bdbd573559b15e0e435502ba3db2f3c3a5", + "language": "JavaScript", + "lines": 43, + "truncated": false, + "block": 1, + "row": 812 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/string-width/node_modules/ansi-regex/index.d.ts", + "sha256": "a902326b04490db2b99a85e58e0acb14a437ca7e2231e9adfb2fa91acdcc365c", + "language": "TypeScript", + "lines": 37, + "truncated": false, + "block": 1, + "row": 12048 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/string-width/node_modules/ansi-regex/index.js", + "sha256": "68c194a1ed4d3dd61680cc1990aaefb0b2ff81308670a04b7e103b637ae0e1b3", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 617 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/string-width/node_modules/emoji-regex/es2015/index.js", + "sha256": "8718dea4d28647912918dba60545890dc10ae672bfb186b6ec0af3fc5e826137", + "language": "JavaScript", + "lines": 6, + "truncated": false, + "block": 1, + "row": 1442 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/string-width/node_modules/emoji-regex/es2015/text.js", + "sha256": "aad6b3f580511fe1fd70ae4ddadff4f4ec6bd5143f1a53b93c7e16eaf608d552", + "language": "JavaScript", + "lines": 6, + "truncated": false, + "block": 1, + "row": 1443 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/string-width/node_modules/emoji-regex/index.d.ts", + "sha256": "69922c48a8f28317217455373eedaf7303772d0c2370cd9b553f091e71f7d47b", + "language": "TypeScript", + "lines": 23, + "truncated": false, + "block": 1, + "row": 12032 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/string-width/node_modules/emoji-regex/index.js", + "sha256": "c56978800e47f095cfbfe96712b5e78d150d1f62e32bb4943675213fce481ef0", + "language": "JavaScript", + "lines": 6, + "truncated": false, + "block": 1, + "row": 1432 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/string-width/node_modules/emoji-regex/text.js", + "sha256": "4bae97c68c68cc8c56fa873fcbcbaf6869da926f3f38ddd9cb6ca22e8f60da41", + "language": "JavaScript", + "lines": 6, + "truncated": false, + "block": 1, + "row": 1433 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/string-width/node_modules/is-fullwidth-code-point/index.d.ts", + "sha256": "9a3e6bdffd8335b7d29c1d578ef7411703c57d07aff959bda92b27110f868532", + "language": "TypeScript", + "lines": 17, + "truncated": false, + "block": 1, + "row": 12040 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/string-width/node_modules/is-fullwidth-code-point/index.js", + "sha256": "7db24c9c5d58273ba32eee1bec3dfebd393fdeddd0b5879ef01dc595476e6979", + "language": "JavaScript", + "lines": 50, + "truncated": false, + "block": 1, + "row": 1019 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/string-width/node_modules/strip-ansi/index.d.ts", + "sha256": "4b0f7f88fc46a672cb59eeb2782af271c203600d602f57a717ef07f96092caf8", + "language": "TypeScript", + "lines": 17, + "truncated": false, + "block": 1, + "row": 12027 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/string-width/node_modules/strip-ansi/index.js", + "sha256": "bf37cd692bf030c2ec270945bc26aa8b19ad379fa5916f12304758f709ab0978", + "language": "JavaScript", + "lines": 4, + "truncated": false, + "block": 1, + "row": 566 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/string_decoder/lib/string_decoder.js", + "sha256": "f1d36d47b2c579063392c1a68963467f2d4f51a069af09eb068d974c63ee3b37", + "language": "JavaScript", + "lines": 296, + "truncated": false, + "block": 1, + "row": 1423 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/strip-ansi/index.d.ts", + "sha256": "d690ec58f57c5fa69cfe088959335c9f12482db67eb1bc1bbba93e3062f69276", + "language": "TypeScript", + "lines": 15, + "truncated": false, + "block": 1, + "row": 12025 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/strip-ansi/index.js", + "sha256": "586d0220463526ec46abd9a458e4c946124f9df915b97817fc2f49cdf6cd5101", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 1, + "row": 579 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/strip-json-comments/index.js", + "sha256": "3fe8c034bfc649c8e80452f4c7052153a49c89a579f3f87a4df6af8bab5ce2b9", + "language": "JavaScript", + "lines": 70, + "truncated": false, + "block": 1, + "row": 1005 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/supports-color/browser.js", + "sha256": "03b3defae5a0801f91bc78f5f3ff2b13dec13df4cef4c0a94554b2d1183da1d1", + "language": "JavaScript", + "lines": 5, + "truncated": false, + "block": 1, + "row": 533 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/supports-color/index.js", + "sha256": "2626aab9a13dc645b1746d6ff1c919b7d27adee60729825404f24e70d982acb3", + "language": "JavaScript", + "lines": 131, + "truncated": false, + "block": 1, + "row": 1158 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-fs/index.js", + "sha256": "593e90fc29525bfb805d60494a94a43cc631ca756092fa378f418cde709c40f3", + "language": "JavaScript", + "lines": 351, + "truncated": false, + "block": 1, + "row": 1426 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-fs/test/index.js", + "sha256": "6490f85a8f35486db58cc97b076b612015583b3c449bdfd16c803abec155c2f3", + "language": "JavaScript", + "lines": 346, + "truncated": false, + "block": 1, + "row": 1416 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-stream/extract.js", + "sha256": "6b5edd072ee880c1c23c540d92089d105ea342f9dcbacbf04fda934c090b8a0d", + "language": "JavaScript", + "lines": 257, + "truncated": false, + "block": 1, + "row": 1325 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-stream/headers.js", + "sha256": "3bcd61e952038c935c2ea17a891f223b218b3a08decc75c4ea5dec9123ae38a9", + "language": "JavaScript", + "lines": 295, + "truncated": false, + "block": 1, + "row": 1389 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-stream/index.js", + "sha256": "0db9eceef5224dbc34c224c398b50eef4b99f937c80c81f660928615a248ed4f", + "language": "JavaScript", + "lines": 2, + "truncated": false, + "block": 1, + "row": 537 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-stream/node_modules/readable-stream/errors-browser.js", + "sha256": "346033597378d23e59068d120d6257f7cd85ae88c40b1f85c3329cece0d119c4", + "language": "JavaScript", + "lines": 127, + "truncated": false, + "block": 1, + "row": 1249 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-stream/node_modules/readable-stream/errors.js", + "sha256": "7028cca95b2f124345bd5b816e0d8184e7b7d208fe0aa76eb38df43e8644fd03", + "language": "JavaScript", + "lines": 116, + "truncated": false, + "block": 1, + "row": 1223 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-stream/node_modules/readable-stream/experimentalWarning.js", + "sha256": "5f9beff594347ba6765b806ec36e25699be1407627e2ee91be5d609e40baacb8", + "language": "JavaScript", + "lines": 17, + "truncated": false, + "block": 1, + "row": 689 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-stream/node_modules/readable-stream/lib/_stream_duplex.js", + "sha256": "c3d976062b770b4a88c91d244557bbe9a828b55dc2de1f9ac85c2d5e909389c4", + "language": "JavaScript", + "lines": 139, + "truncated": false, + "block": 1, + "row": 1265 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-stream/node_modules/readable-stream/lib/_stream_passthrough.js", + "sha256": "14475641ec1d85dcbf95e2555fedb04bf02f8482e08822a5a09b01ddc6389f5f", + "language": "JavaScript", + "lines": 39, + "truncated": false, + "block": 1, + "row": 996 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-stream/node_modules/readable-stream/lib/_stream_readable.js", + "sha256": "c8d010d85186209997a60b3cf1b653a77a88490a3e11e015c2b5eb2d56c30fe7", + "language": "JavaScript", + "lines": 1124, + "truncated": false, + "block": 1, + "row": 1522 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-stream/node_modules/readable-stream/lib/_stream_transform.js", + "sha256": "d85bb2b8c6ba3cf71e6ae759342df89dee95981c6856e9f4dc0b85d70cf60b59", + "language": "JavaScript", + "lines": 201, + "truncated": false, + "block": 1, + "row": 1388 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-stream/node_modules/readable-stream/lib/_stream_writable.js", + "sha256": "e97dc3728c1ba71414f84cb44cb4c4ecefdf0fdd1c3242a5f447e08ed20cca6f", + "language": "JavaScript", + "lines": 697, + "truncated": false, + "block": 1, + "row": 1496 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-stream/node_modules/readable-stream/lib/internal/streams/async_iterator.js", + "sha256": "3a752f2fcb0de353265f2d4928126183b5a08d9c9eb6aa4fab74808286e69844", + "language": "JavaScript", + "lines": 207, + "truncated": false, + "block": 1, + "row": 1324 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-stream/node_modules/readable-stream/lib/internal/streams/buffer_list.js", + "sha256": "10f06e02f00b1e4c28afd01cd4b1ecf280c75c59e97fb8611ac014bdd614d2ad", + "language": "JavaScript", + "lines": 210, + "truncated": false, + "block": 1, + "row": 1344 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-stream/node_modules/readable-stream/lib/internal/streams/destroy.js", + "sha256": "54c7b9c8319baeffa83840ae559b5910f530bdca530292d9be190236f219a7b3", + "language": "JavaScript", + "lines": 105, + "truncated": false, + "block": 1, + "row": 1182 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-stream/node_modules/readable-stream/lib/internal/streams/end-of-stream.js", + "sha256": "75da6b5b0634012017a6252c6e130335de7775e5a02f10817d02af47afa8bb8d", + "language": "JavaScript", + "lines": 104, + "truncated": false, + "block": 1, + "row": 1179 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-stream/node_modules/readable-stream/lib/internal/streams/from-browser.js", + "sha256": "4b4404c7bd6f66a2175cb7a29c60ce4395c055775ec45eaa35af4357656f604f", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 548 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-stream/node_modules/readable-stream/lib/internal/streams/from.js", + "sha256": "9c67e32e4f371b72c83265a077c7e317866170134ff8dca4cc24313c5037426b", + "language": "JavaScript", + "lines": 64, + "truncated": false, + "block": 1, + "row": 1184 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-stream/node_modules/readable-stream/lib/internal/streams/pipeline.js", + "sha256": "16576b2011c78d0c5ceccdeba7451e83e1bd86f2c3f31c05de7df4ccfb149c2a", + "language": "JavaScript", + "lines": 97, + "truncated": false, + "block": 1, + "row": 1113 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-stream/node_modules/readable-stream/lib/internal/streams/state.js", + "sha256": "cdbed99634b523be655225df1547cd00295e3041cb02848c652ddad5e6787e49", + "language": "JavaScript", + "lines": 27, + "truncated": false, + "block": 1, + "row": 749 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-stream/node_modules/readable-stream/lib/internal/streams/stream-browser.js", + "sha256": "72d46a15491627d8fb1489a47d03583cfe5c21902918016ab532b53e615e5a9a", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 524 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-stream/node_modules/readable-stream/lib/internal/streams/stream.js", + "sha256": "1e7903927df33aadb3659ecce55266c9c851da65ce6c8b723a60a305c1c5422c", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 516 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-stream/node_modules/readable-stream/readable-browser.js", + "sha256": "c4ff3ea62ef65a2c68ea721dcbd58b621150660facd02be95ebfc556c4dd123f", + "language": "JavaScript", + "lines": 9, + "truncated": false, + "block": 1, + "row": 692 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-stream/node_modules/readable-stream/readable.js", + "sha256": "2944f1d3c8c5d5c5e07e7c30d6cbef5fc37440b7c73de47aeb37fa8424f04bf1", + "language": "JavaScript", + "lines": 16, + "truncated": false, + "block": 1, + "row": 745 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-stream/pack.js", + "sha256": "dfa9a306e8edf3c8b0445d5cc772e6a0a74382dfcbf19ebd3be06e8f31fbf94e", + "language": "JavaScript", + "lines": 255, + "truncated": false, + "block": 1, + "row": 1311 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tar-stream/sandbox.js", + "sha256": "08c242a5ff86e63801840b6cd6524102f9d044c83369e5245f140bc9994622e9", + "language": "JavaScript", + "lines": 11, + "truncated": false, + "block": 1, + "row": 641 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/term-size/index.d.ts", + "sha256": "e43f6ff58ff67bf8694bcbd3272e292a43b5624fbe11882155d28273741d94b6", + "language": "TypeScript", + "lines": 21, + "truncated": false, + "block": 1, + "row": 12020 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/term-size/index.js", + "sha256": "66a2db117eba5a46de65e0a7fe86bad10302b08ed7b027a31c8513d2ce387f5b", + "language": "JavaScript", + "lines": 72, + "truncated": false, + "block": 1, + "row": 1028 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/to-readable-stream/index.js", + "sha256": "2954bb915ae26ba911fc8ebc2c6264e9a2f1dc644c066777bd2a12bd81dbb309", + "language": "JavaScript", + "lines": 11, + "truncated": false, + "block": 1, + "row": 567 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/to-regex-range/index.js", + "sha256": "e32199271f92372a2deb70a3a57f7c0f7f558d04152a905eb97104867870c404", + "language": "JavaScript", + "lines": 288, + "truncated": false, + "block": 1, + "row": 1348 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/toidentifier/index.js", + "sha256": "6df7c8b218f33abc33563a33de06b4bbb1a43a6232b4c31cb01c55c38ed1cba8", + "language": "JavaScript", + "lines": 30, + "truncated": false, + "block": 1, + "row": 693 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/touch/bin/nodetouch.js", + "sha256": "54f3bba4f7bdfa013284e7f7fab0616b0846187c8c9a3998b80445991415ab0d", + "language": "JavaScript", + "lines": 112, + "truncated": false, + "block": 1, + "row": 1136 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/touch/index.js", + "sha256": "b09215a39073b67ccca59eb9501865d017e0d45196536e4a11653798ec6aae11", + "language": "JavaScript", + "lines": 224, + "truncated": false, + "block": 1, + "row": 1297 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/tunnel-agent/index.js", + "sha256": "76ffc88cb84b3f20c2d7999e4d7c4646e6a450132fde37564c8189bf2c960018", + "language": "JavaScript", + "lines": 244, + "truncated": false, + "block": 1, + "row": 1362 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/type-fest/index.d.ts", + "sha256": "04c593214be9083f51ed93751bd556bfdc0737b0a4cdaf225b12a525df7fa0dc", + "language": "TypeScript", + "lines": 20, + "truncated": false, + "block": 1, + "row": 12053 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/type-fest/source/basic.d.ts", + "sha256": "fda9e5c2afd0920ead6baed40f164229ec8f93188b5c8df196594a54bb8fb5e3", + "language": "TypeScript", + "lines": 67, + "truncated": false, + "block": 1, + "row": 12096 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/type-fest/source/except.d.ts", + "sha256": "c58be3e560989a877531d3ff7c9e5db41c5dd9282480ccf197abfcc708a95b8d", + "language": "TypeScript", + "lines": 22, + "truncated": false, + "block": 1, + "row": 12060 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/type-fest/source/literal-union.d.ts", + "sha256": "091af8276fbc70609a00e296840bd284a2fe29df282f0e8dae2de9f0a706685f", + "language": "TypeScript", + "lines": 33, + "truncated": false, + "block": 1, + "row": 12073 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/type-fest/source/merge-exclusive.d.ts", + "sha256": "d33782b82eea0ee17b99ca563bd19b38259a3aaf096d306ceaf59cd4422629be", + "language": "TypeScript", + "lines": 39, + "truncated": false, + "block": 1, + "row": 12078 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/type-fest/source/merge.d.ts", + "sha256": "50d22844db90a0dcd359afeb59dd1e9a384d977b4b363c880b4e65047237a29e", + "language": "TypeScript", + "lines": 22, + "truncated": false, + "block": 1, + "row": 12031 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/type-fest/source/mutable.d.ts", + "sha256": "91f23ddc3971b1c8938c638fb55601a339483953e1eb800675fa5b5e8113db72", + "language": "TypeScript", + "lines": 22, + "truncated": false, + "block": 1, + "row": 12059 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/type-fest/source/opaque.d.ts", + "sha256": "5a0c23174f822edd4a0c5f52308fd6cbdfcc5ef9c4279286cf7da548fd46cb1b", + "language": "TypeScript", + "lines": 40, + "truncated": false, + "block": 1, + "row": 12080 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/type-fest/source/package-json.d.ts", + "sha256": "8b108d831999b4c6b1df9c39cdcc57c059ef19219c441e5b61bca20aabb9f411", + "language": "TypeScript", + "lines": 501, + "truncated": false, + "block": 1, + "row": 12163 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/type-fest/source/partial-deep.d.ts", + "sha256": "61046f12c3cfafd353d2d03febc96b441c1a0e3bb82a5a88de78cc1be9e10520", + "language": "TypeScript", + "lines": 72, + "truncated": false, + "block": 1, + "row": 12102 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/type-fest/source/promisable.d.ts", + "sha256": "537aff717746703d2157ec563b5de4f6393ce9f69a84ae62b49e9b6c80b6e587", + "language": "TypeScript", + "lines": 23, + "truncated": false, + "block": 1, + "row": 12052 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/type-fest/source/readonly-deep.d.ts", + "sha256": "f4e7f5824ac7b35539efc3bef36b3e6be89603b88224cb5c0ad3526a454fc895", + "language": "TypeScript", + "lines": 59, + "truncated": false, + "block": 1, + "row": 12092 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/type-fest/source/require-at-least-one.d.ts", + "sha256": "7f7f1420c69806e268ab7820cbe31a2dcb2f836f28b3d09132a2a95b4a454b80", + "language": "TypeScript", + "lines": 32, + "truncated": false, + "block": 1, + "row": 12058 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/type-fest/source/require-exactly-one.d.ts", + "sha256": "f9ecf72f3842ae35faf3aa122a9c87a486446cb9084601695f9e6a2cdf0d3e4b", + "language": "TypeScript", + "lines": 36, + "truncated": false, + "block": 1, + "row": 12076 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/type-fest/source/set-optional.d.ts", + "sha256": "5d007514c3876ecc7326b898d1738eed7b77d6a3611d73f5c99fe37801dd48e6", + "language": "TypeScript", + "lines": 32, + "truncated": false, + "block": 1, + "row": 12069 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/type-fest/source/set-required.d.ts", + "sha256": "85dff77bf599bd57135b34169d8f80914bbcdb52dfa9fb5fa2204b366363d519", + "language": "TypeScript", + "lines": 32, + "truncated": false, + "block": 1, + "row": 12070 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/type-is/index.js", + "sha256": "4a94338bd746c6b17dd8681f21124f84ed2cdd4a16022849d28900d5e568642a", + "language": "JavaScript", + "lines": 266, + "truncated": false, + "block": 1, + "row": 1310 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/typedarray-to-buffer/index.js", + "sha256": "bd79149e13a94500f560887d2865b5871a4f4ac976ab7985854f5815fe05c995", + "language": "JavaScript", + "lines": 25, + "truncated": false, + "block": 1, + "row": 755 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/typedarray-to-buffer/test/basic.js", + "sha256": "92eb2f6b68ea7eb9ea1459e86149e7f0b5d32f0ef0e19964d8a8e32e1e7c2291", + "language": "JavaScript", + "lines": 50, + "truncated": false, + "block": 1, + "row": 995 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/undefsafe/example.js", + "sha256": "4bae318ed00ef240ceae9155175aded6833e6470669cde424a59dcb756f65d43", + "language": "JavaScript", + "lines": 14, + "truncated": false, + "block": 1, + "row": 587 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/undefsafe/lib/undefsafe.js", + "sha256": "5f14102f5bb897e4f97494576763e58b8d70eea61df42e08e8b01eeb110ead68", + "language": "JavaScript", + "lines": 125, + "truncated": false, + "block": 1, + "row": 1134 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/unique-string/index.d.ts", + "sha256": "773a3e1723f63c863eb08ee3c7078ee09d8313cb1748d0fa599bd0d87ffceab9", + "language": "TypeScript", + "lines": 16, + "truncated": false, + "block": 1, + "row": 12030 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/unique-string/index.js", + "sha256": "47faea50fc6ac8f9d214aefde94f2df6c1772b520fb5570ec87bf5b8c476005b", + "language": "JavaScript", + "lines": 4, + "truncated": false, + "block": 1, + "row": 551 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/unpipe/index.js", + "sha256": "69cd57b5cdd08c42410ebc0d92235e334f1fb985e6eb2dcfb1c692db674411bd", + "language": "JavaScript", + "lines": 69, + "truncated": false, + "block": 1, + "row": 901 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/update-notifier/check.js", + "sha256": "430867f74e72fc85ac0117ad028565b935b57ca33f4a209e93408f6d1f236aa1", + "language": "JavaScript", + "lines": 28, + "truncated": false, + "block": 1, + "row": 768 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/update-notifier/index.js", + "sha256": "66ffd3934cd5c4aba6b010fa5fe207aa5eb7e70c35e5b322f9f0f69ec27012e2", + "language": "JavaScript", + "lines": 187, + "truncated": false, + "block": 1, + "row": 1304 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/url-parse-lax/index.js", + "sha256": "2b12ac6c35b76cf97296d801103cda7167649e63ef3fbff1b84d48db8b8c2a37", + "language": "JavaScript", + "lines": 12, + "truncated": false, + "block": 1, + "row": 646 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/util-deprecate/browser.js", + "sha256": "abaef53ebcdc98f3655331f834986a2d11b6a824f58d670369669246d1b7b69b", + "language": "JavaScript", + "lines": 67, + "truncated": false, + "block": 1, + "row": 993 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/util-deprecate/node.js", + "sha256": "9a86a29fa34a99b861e707345fb1d1e2e55a6c23edb8f992bed57cc607f42d8e", + "language": "JavaScript", + "lines": 6, + "truncated": false, + "block": 1, + "row": 552 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/utils-merge/index.js", + "sha256": "ec62860d6445addffd574f640451ea92e0558b6df793b2e0f1c7175fc2ff6366", + "language": "JavaScript", + "lines": 23, + "truncated": false, + "block": 1, + "row": 648 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/vary/index.js", + "sha256": "8e40311960636d40473c57e335bbca115036766bf150df296b941256432ab410", + "language": "JavaScript", + "lines": 149, + "truncated": false, + "block": 1, + "row": 1166 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/which-pm-runs/index.js", + "sha256": "e59e301e71cf21c9d281c0be486e55b914e8b8a6f3517d96176853d0da3f1f11", + "language": "JavaScript", + "lines": 17, + "truncated": false, + "block": 1, + "row": 670 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/wide-align/align.js", + "sha256": "6d29d75e7e7bc9b9dddf7111a024db41410a0a7d36f90bf06e6be77d1366c03e", + "language": "JavaScript", + "lines": 65, + "truncated": false, + "block": 1, + "row": 967 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/wide-align/node_modules/ansi-regex/index.js", + "sha256": "4f5fa14015175c39bd0f89222c316be12dc7851c0d55d625b1e3835d73a5f1a7", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 590 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/wide-align/node_modules/string-width/index.js", + "sha256": "da37e9e71bc22b2b31f5e70c485ac2544e9defef5b98c99aabb1646f639c0093", + "language": "JavaScript", + "lines": 36, + "truncated": false, + "block": 1, + "row": 725 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/wide-align/node_modules/strip-ansi/index.js", + "sha256": "c841502a9cbac7dda28d2c6b1bad456b50debdbc106540657fad13ba635826df", + "language": "JavaScript", + "lines": 4, + "truncated": false, + "block": 1, + "row": 565 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/widest-line/index.d.ts", + "sha256": "d0e0293c14513fb90dba47e86a382f607f0c012af64f6f687543e404a334dda6", + "language": "TypeScript", + "lines": 21, + "truncated": false, + "block": 1, + "row": 12036 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/widest-line/index.js", + "sha256": "bce0a85d7a3b61a8246cca2fed01df1cea903c2fdd1e197a4ff170404610f37e", + "language": "JavaScript", + "lines": 16, + "truncated": false, + "block": 1, + "row": 621 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/wrappy/wrappy.js", + "sha256": "153453c4d84a3c2f13589c37055a7daff61d48475dcce554f7eedad15fc7b3e5", + "language": "JavaScript", + "lines": 33, + "truncated": false, + "block": 1, + "row": 823 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/write-file-atomic/index.js", + "sha256": "6dd773000ef577eb62ee6294530a169b2c6360a20262952bf5636893a6c641cf", + "language": "JavaScript", + "lines": 259, + "truncated": false, + "block": 1, + "row": 1358 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ws/browser.js", + "sha256": "010da44addea1d88b2b732540c3f1fd0cbcb28926b96623d4c64222e0ead2d0e", + "language": "JavaScript", + "lines": 8, + "truncated": false, + "block": 1, + "row": 572 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ws/index.js", + "sha256": "c2b0c9905540a51acb276523bb024ef3c11bd118b03a90d92962080ebd07fec9", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 610 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ws/lib/buffer-util.js", + "sha256": "da2088dcfa847be2b26a0c4fd46480e2a787b3120bcaceb98555654bbba53631", + "language": "JavaScript", + "lines": 129, + "truncated": false, + "block": 1, + "row": 1172 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ws/lib/constants.js", + "sha256": "2c2e8f6abbb7c2314d5736ef0a8d11f04ddc3cf4faf1c710df5d75c4170e937e", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 598 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ws/lib/event-target.js", + "sha256": "6bad3e83c4a8f113cfc40ef2757ecbc727e67c5e16ea8447cdc6e12af2b1554a", + "language": "JavaScript", + "lines": 184, + "truncated": false, + "block": 1, + "row": 1264 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ws/lib/extension.js", + "sha256": "13b228a92d2dad9d1bffd09faaae6b64bfc1f713dd966010ad479a901c243a86", + "language": "JavaScript", + "lines": 223, + "truncated": false, + "block": 1, + "row": 1361 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ws/lib/limiter.js", + "sha256": "e0469d4b83f6ba764b15f80e1766b75c136fbff68f048f4c050f0b1c7f065f69", + "language": "JavaScript", + "lines": 55, + "truncated": false, + "block": 1, + "row": 877 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ws/lib/permessage-deflate.js", + "sha256": "d7f2bd3b33d72d012f9b32e39f8ebaf572f8f0ec58141c4adc3edbda4c14bc18", + "language": "JavaScript", + "lines": 512, + "truncated": false, + "block": 1, + "row": 1454 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ws/lib/receiver.js", + "sha256": "f7a6fda3723be1b60e15fc877f08601cfbc18eb8dbbe79983c7453f902742adc", + "language": "JavaScript", + "lines": 507, + "truncated": false, + "block": 1, + "row": 1448 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ws/lib/sender.js", + "sha256": "3f7526f281342bbac168e366cf8018ed919f9288db3b52f36f69d637f20bd691", + "language": "JavaScript", + "lines": 405, + "truncated": false, + "block": 1, + "row": 1437 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ws/lib/stream.js", + "sha256": "503e6773f58a9fd05ac87be76b8fa88848dbc9800f09154f5191a6768bb687f8", + "language": "JavaScript", + "lines": 165, + "truncated": false, + "block": 1, + "row": 1233 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ws/lib/validation.js", + "sha256": "6448b2234865827c74b0c38c68f9f4a7ff3cf50ba9c8746d3182d6fdc007c2b9", + "language": "JavaScript", + "lines": 30, + "truncated": false, + "block": 1, + "row": 738 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ws/lib/websocket-server.js", + "sha256": "65019eca81967a127eb139d0943f1799f915f19d2a58766e887d0708dbe5c2f5", + "language": "JavaScript", + "lines": 406, + "truncated": false, + "block": 1, + "row": 1444 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/ws/lib/websocket.js", + "sha256": "512c5d7c32a67bd22201651cae1f71ed964a629a505cf7c993dafdc377d8d383", + "language": "JavaScript", + "lines": 933, + "truncated": false, + "block": 1, + "row": 1504 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/xdg-basedir/index.d.ts", + "sha256": "d0c3d74b53f092d91d5a5bd160ed18094fcc84049a4b61841a5344aec3c11bd2", + "language": "TypeScript", + "lines": 81, + "truncated": false, + "block": 1, + "row": 12085 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/node_modules/xdg-basedir/index.js", + "sha256": "a90d4d4f1310332d1170f3c86fa04d4dc69dd4f7228ca5c59454546d6ea995f0", + "language": "JavaScript", + "lines": 28, + "truncated": false, + "block": 1, + "row": 775 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/public/Abubu/Abubu.js", + "sha256": "656b8e0757a368fb7e61150b3d0dd809b2d8380ae573f55a5f45efdb6b0762cd", + "language": "JavaScript", + "lines": 6073, + "truncated": true, + "block": 1, + "row": 1559 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/public/Abubu/libs/dat.gui.js", + "sha256": "6d08eaf68fb88bd177c28a308e2f41dd24de2b79bb69a20a7a95c6935112aef0", + "language": "JavaScript", + "lines": 4292, + "truncated": false, + "block": 1, + "row": 1553 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/public/Abubu/libs/gl-matrix.js", + "sha256": "c58f94f9c7f493186e8cc2ff6c742cfa96da2053d2e18c7da951514105c386ff", + "language": "JavaScript", + "lines": 6888, + "truncated": false, + "block": 1, + "row": 1550 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/public/app/main.js", + "sha256": "397d417a7516e4813a00badbb5b835202f6a4f73fc80c4ca79e47db73c3e85ec", + "language": "JavaScript", + "lines": 359, + "truncated": false, + "block": 1, + "row": 1441 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/public/config.js", + "sha256": "c6812ab3e25ec7a78c3b47cdb94e4cafc605d8893bea394cf32e7028d1f3caf9", + "language": "JavaScript", + "lines": 23, + "truncated": false, + "block": 1, + "row": 752 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/public/libs/image.js", + "sha256": "fa94cca1a5daac2b20be0112b0bbb9d153df0eef77b3728480ab1320760660b4", + "language": "JavaScript", + "lines": 25, + "truncated": false, + "block": 1, + "row": 809 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/public/libs/jquery-3.4.1.min.js", + "sha256": "0925e8ad7bd971391a8b1e98be8e87a6971919eb5b60c196485941c3c1df089a", + "language": "JavaScript", + "lines": 2, + "truncated": false, + "block": 1, + "row": 1543 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/public/libs/json.js", + "sha256": "85ec147c394ac0a2429dbe6b0a7b040b254ef26a02bddd7282bca10c73ca5046", + "language": "JavaScript", + "lines": 72, + "truncated": false, + "block": 1, + "row": 1140 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/public/libs/require.js", + "sha256": "4948c3fe4b57cd92118ec7b89deb99ff0eb2586a02c5f454df21c1ecfc144c81", + "language": "JavaScript", + "lines": 5, + "truncated": false, + "block": 1, + "row": 1478 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/public/libs/shader.js", + "sha256": "18a0f81c563bc7bd2c9fa13faba51fd5ec0efa66a3c973ff0f99c38ec7737aba", + "language": "JavaScript", + "lines": 91, + "truncated": false, + "block": 1, + "row": 1195 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/public/libs/stats.js", + "sha256": "8bb227a9971bbaa538b2732e1fec53a5dac300a494458a0324b9df55ab03f330", + "language": "JavaScript", + "lines": 5, + "truncated": false, + "block": 1, + "row": 1052 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/public/libs/text.js", + "sha256": "8c31bc55a5c70471e6307c73fcf5f764764eaf79778511ced360b5db2617ed4f", + "language": "JavaScript", + "lines": 408, + "truncated": false, + "block": 1, + "row": 1474 + }, + { + "path": "ServerClient_CellularAutomaton_Simulation/server.js", + "sha256": "4e39c62882fb815c8fe1931171e604470f3892ea5b517da69f26f3931a6514d4", + "language": "JavaScript", + "lines": 143, + "truncated": false, + "block": 1, + "row": 1235 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/binding-abstract/lib/index.js", + "sha256": "ad699b9b42ad45bf0476042cfb7a8a05affdc253bbc58ca4e23a907947020932", + "language": "JavaScript", + "lines": 222, + "truncated": false, + "block": 1, + "row": 1395 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/binding-abstract/node_modules/debug/src/browser.js", + "sha256": "4e3dc6d0e1db58a0d74206b443f35582d3b717be56a0f6d030c34af6c2ad9f62", + "language": "JavaScript", + "lines": 269, + "truncated": false, + "block": 1, + "row": 1329 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/binding-abstract/node_modules/debug/src/common.js", + "sha256": "ae6855e9f5ef6687aa8f76e69dd1854f1b99985146434daff310150083cfde02", + "language": "JavaScript", + "lines": 261, + "truncated": false, + "block": 1, + "row": 1332 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/binding-abstract/node_modules/debug/src/index.js", + "sha256": "aa127ff1752b7d9c7415c5c7bb6994d9aa722b81bcbcab4bd48316b013d23bf3", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 616 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/binding-abstract/node_modules/debug/src/node.js", + "sha256": "f237adcb52849de7c128f57e0468b52353c529a6c8341810477c0e7144359559", + "language": "JavaScript", + "lines": 263, + "truncated": false, + "block": 1, + "row": 1283 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/binding-abstract/node_modules/ms/index.js", + "sha256": "55986972f5f3c9446f876c576e1cd30fd4f04cd26527efbb5ad834637c740e4c", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1169 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/binding-mock/lib/index.js", + "sha256": "02c29fefc263bca25c07c2f19b082efbb1618a85e150399716d245536aa7c946", + "language": "JavaScript", + "lines": 233, + "truncated": false, + "block": 1, + "row": 1319 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/binding-mock/lib/legacy.js", + "sha256": "5b81d2da89374aca3e891db5f79186e1c7288e73e4be39aadc16377e81d276bd", + "language": "JavaScript", + "lines": 26, + "truncated": false, + "block": 1, + "row": 726 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/binding-mock/node_modules/debug/src/browser.js", + "sha256": "4e3dc6d0e1db58a0d74206b443f35582d3b717be56a0f6d030c34af6c2ad9f62", + "language": "JavaScript", + "lines": 269, + "truncated": false, + "block": 1, + "row": 1329 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/binding-mock/node_modules/debug/src/common.js", + "sha256": "ae6855e9f5ef6687aa8f76e69dd1854f1b99985146434daff310150083cfde02", + "language": "JavaScript", + "lines": 261, + "truncated": false, + "block": 1, + "row": 1332 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/binding-mock/node_modules/debug/src/index.js", + "sha256": "aa127ff1752b7d9c7415c5c7bb6994d9aa722b81bcbcab4bd48316b013d23bf3", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 616 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/binding-mock/node_modules/debug/src/node.js", + "sha256": "f237adcb52849de7c128f57e0468b52353c529a6c8341810477c0e7144359559", + "language": "JavaScript", + "lines": 263, + "truncated": false, + "block": 1, + "row": 1283 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/binding-mock/node_modules/ms/index.js", + "sha256": "55986972f5f3c9446f876c576e1cd30fd4f04cd26527efbb5ad834637c740e4c", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1169 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/lib/darwin.js", + "sha256": "3805d0cb29dd6f7d22873a24faa0dfc0f1799e63ab01d51360755d6def131283", + "language": "JavaScript", + "lines": 110, + "truncated": false, + "block": 1, + "row": 1139 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/lib/index.js", + "sha256": "a1712039aa76f42c0bf5da9b0b3cc4080fc3da8b7366ad6f456d2348d1f55769", + "language": "JavaScript", + "lines": 15, + "truncated": false, + "block": 1, + "row": 645 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/lib/legacy.js", + "sha256": "5b81d2da89374aca3e891db5f79186e1c7288e73e4be39aadc16377e81d276bd", + "language": "JavaScript", + "lines": 26, + "truncated": false, + "block": 1, + "row": 726 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/lib/linux-list.js", + "sha256": "b18cbd1238e8e7b228517641670b0d31a8f4110dc96acbe4aa120d82a586b92e", + "language": "JavaScript", + "lines": 100, + "truncated": false, + "block": 1, + "row": 1121 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/lib/linux.js", + "sha256": "33141436365765d92db7e67261d83016fb5b491f90d73d13ca47e849f141f9b8", + "language": "JavaScript", + "lines": 110, + "truncated": false, + "block": 1, + "row": 1137 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/lib/poller.js", + "sha256": "424e965a6ea648b39177e2755c8ea6b50b5d40b41c0c29d26bc227af28f60dfb", + "language": "JavaScript", + "lines": 111, + "truncated": false, + "block": 1, + "row": 1147 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/lib/unix-read.js", + "sha256": "8d3cfaedd7aa7a565f73cd0bcb3e7dac1d5d74b231f7e966f5dcb982d12a1289", + "language": "JavaScript", + "lines": 57, + "truncated": false, + "block": 1, + "row": 1004 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/lib/unix-write.js", + "sha256": "75416bc5bca63b31889fdabe6e29d6f00f696e05c469f868c70829da062fa8f8", + "language": "JavaScript", + "lines": 57, + "truncated": false, + "block": 1, + "row": 1040 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/lib/win32-sn-parser.js", + "sha256": "5e814ca196ff403a42fe5ab90c7555325496841f410ae6a35b1f0aa6415364e7", + "language": "JavaScript", + "lines": 14, + "truncated": false, + "block": 1, + "row": 593 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/lib/win32.js", + "sha256": "e51b6213a8da449e23cc99a4858a51269c1a662d95c37b8cc55f85566469e501", + "language": "JavaScript", + "lines": 123, + "truncated": false, + "block": 1, + "row": 1167 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/node_modules/debug/src/browser.js", + "sha256": "4e3dc6d0e1db58a0d74206b443f35582d3b717be56a0f6d030c34af6c2ad9f62", + "language": "JavaScript", + "lines": 269, + "truncated": false, + "block": 1, + "row": 1329 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/node_modules/debug/src/common.js", + "sha256": "ae6855e9f5ef6687aa8f76e69dd1854f1b99985146434daff310150083cfde02", + "language": "JavaScript", + "lines": 261, + "truncated": false, + "block": 1, + "row": 1332 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/node_modules/debug/src/index.js", + "sha256": "aa127ff1752b7d9c7415c5c7bb6994d9aa722b81bcbcab4bd48316b013d23bf3", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 616 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/node_modules/debug/src/node.js", + "sha256": "f237adcb52849de7c128f57e0468b52353c529a6c8341810477c0e7144359559", + "language": "JavaScript", + "lines": 263, + "truncated": false, + "block": 1, + "row": 1283 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/node_modules/ms/index.js", + "sha256": "55986972f5f3c9446f876c576e1cd30fd4f04cd26527efbb5ad834637c740e4c", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1169 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/src/darwin_list.cpp", + "sha256": "2e862acf8ddb8c1ce2f0e969c1e351a69e7b0dc3148fe1fe9199b1e28859e945", + "language": "C++", + "lines": 359, + "truncated": false, + "block": 1, + "row": 266 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/src/darwin_list.h", + "sha256": "1cdef85c1dd87c3e13c6da4ed68a2a1228244f1fb8b0eaa9c9d62f3490ac9a3d", + "language": "C/C++", + "lines": 46, + "truncated": false, + "block": 1, + "row": 325 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/src/poller.cpp", + "sha256": "efd7adc2b6b6b25f08f3875e3c7ff74a3341fb3f6fc19fc003ec06b36066912d", + "language": "C++", + "lines": 142, + "truncated": false, + "block": 1, + "row": 235 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/src/poller.h", + "sha256": "8d870a12a3fd47120fc5d44b76827394c1d0560b211cee7555eaaa633e5c514d", + "language": "C/C++", + "lines": 34, + "truncated": false, + "block": 1, + "row": 308 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/src/serialport.cpp", + "sha256": "4d7f711bddb3c0138f19d39e942d5b3435f3fd758bdda45c7c6badcf871f9c58", + "language": "C++", + "lines": 486, + "truncated": false, + "block": 1, + "row": 271 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/src/serialport.h", + "sha256": "93cfc8662062c589a41ff2752ade93155e7ccd367501f11526fb4590a9086e00", + "language": "C/C++", + "lines": 140, + "truncated": false, + "block": 1, + "row": 391 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/src/serialport_linux.cpp", + "sha256": "8942c6a050d415f464cc69a24c98c8fc113696ef0798031631b896aea9a6a9dd", + "language": "C++", + "lines": 60, + "truncated": false, + "block": 1, + "row": 213 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/src/serialport_linux.h", + "sha256": "9560999d6e88aac789656a92b6ac6d0e3d9a56fe6c351541e75142fb01657f37", + "language": "C/C++", + "lines": 9, + "truncated": false, + "block": 1, + "row": 292 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/src/serialport_unix.cpp", + "sha256": "276cda9739354b0294b9190a56f5a3b8d1ea35ed69fa198eb5b0d6d970d68d70", + "language": "C++", + "lines": 421, + "truncated": false, + "block": 1, + "row": 268 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/src/serialport_unix.h", + "sha256": "6274adf5ce1c944f3e5826419659c6e90bb1d6e74b896498b23ccba0d87402ce", + "language": "C/C++", + "lines": 7, + "truncated": false, + "block": 1, + "row": 289 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/src/serialport_win.cpp", + "sha256": "009a904e518778a392adf6201b9fbd9efca855e0c1f9cb2674351e85f856a53a", + "language": "C++", + "lines": 953, + "truncated": false, + "block": 1, + "row": 285 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/bindings/src/serialport_win.h", + "sha256": "79a69af9ac9128cf0b10e50813dc6ce1d2a86c32cb6e5ecf88298995569e619e", + "language": "C/C++", + "lines": 74, + "truncated": false, + "block": 1, + "row": 350 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/parser-byte-length/lib/index.js", + "sha256": "aa1abbd2d1f8f96922fe20b7f46a0209fd8a34f7f78b22380dbbbd89f5d02c5c", + "language": "JavaScript", + "lines": 55, + "truncated": false, + "block": 1, + "row": 986 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/parser-cctalk/lib/index.js", + "sha256": "6f1bacc8b7264ac68f2c323f1b3207113739cacb0b1ad583c7ceb75c98bd5f25", + "language": "JavaScript", + "lines": 52, + "truncated": false, + "block": 1, + "row": 994 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/parser-delimiter/lib/index.js", + "sha256": "e45d312347f020d99c6166b254bb22c278627bc651224257525bbe3bce86680e", + "language": "JavaScript", + "lines": 49, + "truncated": false, + "block": 1, + "row": 984 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/parser-inter-byte-timeout/lib/index.js", + "sha256": "42e9896c6f5de926d13a2624387fbe2639aabbe420f6d31d1361c01d72c169d7", + "language": "JavaScript", + "lines": 71, + "truncated": false, + "block": 1, + "row": 1111 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/parser-readline/lib/index.js", + "sha256": "712d3e9d03d2a54ab1f3ffd11f89307cd907f2f2c560bf1bcd434a247770f700", + "language": "JavaScript", + "lines": 30, + "truncated": false, + "block": 1, + "row": 848 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/parser-ready/lib/index.js", + "sha256": "5f5e9821ceb587b7f8a12deaade4f64e236a5b557bda921389a2c34b0377deb1", + "language": "JavaScript", + "lines": 63, + "truncated": false, + "block": 1, + "row": 1055 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/parser-regex/lib/index.js", + "sha256": "e1ffb95e6ca3897434f540205a0cef48e01ceafb5940eed06df816bd8e4b483d", + "language": "JavaScript", + "lines": 53, + "truncated": false, + "block": 1, + "row": 948 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/stream/lib/index.js", + "sha256": "8f7e1efc9c410f19b6a130d11c28a1e3e121b32fb54006d72586ea9a6b24ee55", + "language": "JavaScript", + "lines": 656, + "truncated": false, + "block": 1, + "row": 1502 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/stream/node_modules/debug/src/browser.js", + "sha256": "4e3dc6d0e1db58a0d74206b443f35582d3b717be56a0f6d030c34af6c2ad9f62", + "language": "JavaScript", + "lines": 269, + "truncated": false, + "block": 1, + "row": 1329 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/stream/node_modules/debug/src/common.js", + "sha256": "ae6855e9f5ef6687aa8f76e69dd1854f1b99985146434daff310150083cfde02", + "language": "JavaScript", + "lines": 261, + "truncated": false, + "block": 1, + "row": 1332 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/stream/node_modules/debug/src/index.js", + "sha256": "aa127ff1752b7d9c7415c5c7bb6994d9aa722b81bcbcab4bd48316b013d23bf3", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 616 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/stream/node_modules/debug/src/node.js", + "sha256": "f237adcb52849de7c128f57e0468b52353c529a6c8341810477c0e7144359559", + "language": "JavaScript", + "lines": 263, + "truncated": false, + "block": 1, + "row": 1283 + }, + { + "path": "ServerClient_FKModel/node_modules/@serialport/stream/node_modules/ms/index.js", + "sha256": "55986972f5f3c9446f876c576e1cd30fd4f04cd26527efbb5ad834637c740e4c", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1169 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/component-emitter/index.d.ts", + "sha256": "a3a88c1869ba1022dfaefac47ff7a984ec62510e9b4d60988f91d5e523266c34", + "language": "TypeScript", + "lines": 22, + "truncated": false, + "block": 1, + "row": 12047 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/cookie/index.d.ts", + "sha256": "405ad6db8aa3d5618c3be21cde8125de28a3e40690eb05136c123f420c05c082", + "language": "TypeScript", + "lines": 135, + "truncated": false, + "block": 1, + "row": 12147 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/cors/index.d.ts", + "sha256": "a68969f643e0cb091046a9437b64cb1880a081fc07c70a4717b0edef2a38bc85", + "language": "TypeScript", + "lines": 58, + "truncated": false, + "block": 1, + "row": 12087 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/assert.d.ts", + "sha256": "19d580a3b42ad5caeaee266ae958260e23f2df0549ee201c886c8bd7a4f01d4e", + "language": "TypeScript", + "lines": 129, + "truncated": false, + "block": 1, + "row": 12139 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/async_hooks.d.ts", + "sha256": "d20f08527645f62facb2d66c2b7bd31ea964b59c897d00bddb1efe8c13890b72", + "language": "TypeScript", + "lines": 233, + "truncated": false, + "block": 1, + "row": 12162 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/base.d.ts", + "sha256": "e61a21e9418f279bc480394a94d1581b2dee73747adcbdef999b6737e34d721b", + "language": "TypeScript", + "lines": 19, + "truncated": false, + "block": 1, + "row": 12062 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/buffer.d.ts", + "sha256": "5726b5ce952dc5beaeb08d5f64236632501568a54a390363d2339ba1dc5393b1", + "language": "TypeScript", + "lines": 26, + "truncated": false, + "block": 1, + "row": 12051 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/child_process.d.ts", + "sha256": "674bedbfd2004e233e2a266a3d2286e524f0d58787a98522d834d6ccda1d215a", + "language": "TypeScript", + "lines": 514, + "truncated": false, + "block": 1, + "row": 12190 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/cluster.d.ts", + "sha256": "714637d594e1a38a075091fe464ca91c6abc0b154784b4287f6883200e28ccef", + "language": "TypeScript", + "lines": 266, + "truncated": false, + "block": 1, + "row": 12175 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/console.d.ts", + "sha256": "23edba5f47d3409810c563fe8034ae2c59e718e1ef8570f4152ccdde1915a096", + "language": "TypeScript", + "lines": 137, + "truncated": false, + "block": 1, + "row": 12140 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/constants.d.ts", + "sha256": "0e9c55f894ca2d9cf63b5b0d43a8cec1772dd560233fd16275bc7a485eb82f83", + "language": "TypeScript", + "lines": 19, + "truncated": false, + "block": 1, + "row": 12046 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/crypto.d.ts", + "sha256": "d53b352a01645c470a0d8c31bf290ba791fc28ade0ce187a4a50f5c2f826f75e", + "language": "TypeScript", + "lines": 1176, + "truncated": false, + "block": 1, + "row": 12194 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/dgram.d.ts", + "sha256": "5f0a09de75bd965c21dc6d73671ba88830272f9ed62897bb0aa9754b369b1eed", + "language": "TypeScript", + "lines": 145, + "truncated": false, + "block": 1, + "row": 12152 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/dns.d.ts", + "sha256": "2b34e7fcba9e1f24e7f54ba5c8be5a8895b0b8b444ccf6548e04acdee0899317", + "language": "TypeScript", + "lines": 384, + "truncated": false, + "block": 1, + "row": 12176 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/domain.d.ts", + "sha256": "06d2be99c3dd2ff52114d02ee443ba486ab482423df1941d3c97d6a92e924d70", + "language": "TypeScript", + "lines": 28, + "truncated": false, + "block": 1, + "row": 12055 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/events.d.ts", + "sha256": "bfd4f140c07091b5e8a963c89e6fa3f44b6cfcbc11471b465cf63e2d020ad0eb", + "language": "TypeScript", + "lines": 83, + "truncated": false, + "block": 1, + "row": 12120 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/fs.d.ts", + "sha256": "a106a0bea088b70879ac88ff606dc253c0cc474ea05ad3a282b8bfb1091ae576", + "language": "TypeScript", + "lines": 2262, + "truncated": false, + "block": 1, + "row": 12201 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/fs/promises.d.ts", + "sha256": "c98ce957db9eebd75f53edda3f6893e05ab2d2283b5667b18e31bcdb6427ed10", + "language": "TypeScript", + "lines": 561, + "truncated": false, + "block": 1, + "row": 12191 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/globals.d.ts", + "sha256": "583b4bd4e441916be4bf152ee323c4ffa6e178fd25df2ee2215ef05c7feb5ad4", + "language": "TypeScript", + "lines": 614, + "truncated": false, + "block": 1, + "row": 12185 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/globals.global.d.ts", + "sha256": "2708349d5a11a5c2e5f3a0765259ebe7ee00cdcc8161cb9990cb4910328442a1", + "language": "TypeScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 12004 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/http.d.ts", + "sha256": "37eed30fc8318b8ac76eac6f41d0758a9d0bffd8f3ff353e3ad0f8717dd08d92", + "language": "TypeScript", + "lines": 428, + "truncated": false, + "block": 1, + "row": 12179 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/http2.d.ts", + "sha256": "9aff68f1b847b846d3d50a58c9f8f99389bedd0258d1b1c201f11b97ecfd36f8", + "language": "TypeScript", + "lines": 962, + "truncated": false, + "block": 1, + "row": 12198 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/https.d.ts", + "sha256": "1978992206803f5761e99e893d93b25abc818c5fe619674fdf2ae02b29f641ba", + "language": "TypeScript", + "lines": 40, + "truncated": false, + "block": 1, + "row": 12089 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/index.d.ts", + "sha256": "9c4c395e927045b324877acdc4bfb95f128f36bc9f073266a2f0342495075a4f", + "language": "TypeScript", + "lines": 59, + "truncated": false, + "block": 1, + "row": 12122 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/inspector.d.ts", + "sha256": "05fbe81f09fc455a2c343d2458d2b3c600c90b92b22926be765ee79326be9466", + "language": "TypeScript", + "lines": 3048, + "truncated": false, + "block": 1, + "row": 12202 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/module.d.ts", + "sha256": "8e7d6dae9e19bbe47600dcfd4418db85b30ae7351474ea0aad5e628f9845d340", + "language": "TypeScript", + "lines": 57, + "truncated": false, + "block": 1, + "row": 12091 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/net.d.ts", + "sha256": "f20ea392f7f27feb7a90e5a24319a4e365b07bf83c39a547711fe7ff9df68657", + "language": "TypeScript", + "lines": 289, + "truncated": false, + "block": 1, + "row": 12171 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/os.d.ts", + "sha256": "32542c4660ecda892a333a533feedba31738ee538ef6a78eb73af647137bc3fc", + "language": "TypeScript", + "lines": 243, + "truncated": false, + "block": 1, + "row": 12156 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/path.d.ts", + "sha256": "0ecacea5047d1a7d350e7049dbd22f26435be5e8736a81a56afec5b3264db1ca", + "language": "TypeScript", + "lines": 158, + "truncated": false, + "block": 1, + "row": 12149 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/perf_hooks.d.ts", + "sha256": "ffcb4ebde21f83370ed402583888b28651d2eb7f05bfec9482eb46d82adedd7f", + "language": "TypeScript", + "lines": 275, + "truncated": false, + "block": 1, + "row": 12165 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/process.d.ts", + "sha256": "fcb95c45150c717706119f12f2a3639d51baa041cd5bb441eb8501e04b52c501", + "language": "TypeScript", + "lines": 453, + "truncated": false, + "block": 1, + "row": 12182 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/punycode.d.ts", + "sha256": "a7b43c69f9602d198825e403ee34e5d64f83c48b391b2897e8c0e6f72bca35f8", + "language": "TypeScript", + "lines": 86, + "truncated": false, + "block": 1, + "row": 12125 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/querystring.d.ts", + "sha256": "f4a3fc4efc6944e7b7bd4ccfa45e0df68b6359808e6cf9d061f04fd964a7b2d3", + "language": "TypeScript", + "lines": 32, + "truncated": false, + "block": 1, + "row": 12072 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/readline.d.ts", + "sha256": "73cad675aead7a2c05cf934e7e700c61d84b2037ac1d576c3f751199b25331da", + "language": "TypeScript", + "lines": 174, + "truncated": false, + "block": 1, + "row": 12153 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/repl.d.ts", + "sha256": "8c3137ba3583ec18484429ec1c8eff89efdc42730542f157b38b102fdccc0c71", + "language": "TypeScript", + "lines": 399, + "truncated": false, + "block": 1, + "row": 12177 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/stream.d.ts", + "sha256": "74594bec8a9fa1a2cd40268f9ab95d0c44b6080345da6e8b913939d19b1d57ae", + "language": "TypeScript", + "lines": 448, + "truncated": false, + "block": 1, + "row": 12184 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/string_decoder.d.ts", + "sha256": "94ca7beec4e274d32362b54e0133152f7b4be9487db7b005070c03880b6363aa", + "language": "TypeScript", + "lines": 11, + "truncated": false, + "block": 1, + "row": 12015 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/timers.d.ts", + "sha256": "2d713cbcbd5bcc38d91546eaeea7bb1c8686dc4a2995a28556d957b1b9de11d9", + "language": "TypeScript", + "lines": 20, + "truncated": false, + "block": 1, + "row": 12061 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/tls.d.ts", + "sha256": "bbf21f210782db4193359010a4710786add43e3b50aa42fc0d371f45b4e4d8d3", + "language": "TypeScript", + "lines": 783, + "truncated": false, + "block": 1, + "row": 12192 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/trace_events.d.ts", + "sha256": "0b7733d83619ac4e3963e2a9f7c75dc1e9af6850cb2354c9554977813092c10a", + "language": "TypeScript", + "lines": 65, + "truncated": false, + "block": 1, + "row": 12098 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/ts3.6/assert.d.ts", + "sha256": "1aa743b5b89d2f3c7eff2c20661d119623e4dbfa33f992a16583f16af7b70c75", + "language": "TypeScript", + "lines": 103, + "truncated": false, + "block": 1, + "row": 12133 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/ts3.6/base.d.ts", + "sha256": "ae68a04912ee5a0f589276f9ec60b095f8c40d48128a4575b3fdd7d93806931c", + "language": "TypeScript", + "lines": 61, + "truncated": false, + "block": 1, + "row": 12110 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/ts3.6/index.d.ts", + "sha256": "092cf35ca0f8f72a652d9a9e3dbdb892927de37a1704cd8d77e04ec1efbb148b", + "language": "TypeScript", + "lines": 7, + "truncated": false, + "block": 1, + "row": 12018 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/tty.d.ts", + "sha256": "3ce933f0c3955f67f67eb7d6b5c83c2c54a18472c1d6f2bb651e51dd40c84837", + "language": "TypeScript", + "lines": 70, + "truncated": false, + "block": 1, + "row": 12106 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/url.d.ts", + "sha256": "631e96db896d645f7132c488ad34a16d71fd2be9f44696f8c98289ee1c8cbfa9", + "language": "TypeScript", + "lines": 120, + "truncated": false, + "block": 1, + "row": 12129 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/util.d.ts", + "sha256": "2c77230d381cba81eb6f87cda2fbfff6c0427c6546c2e2590110effff37c58f7", + "language": "TypeScript", + "lines": 211, + "truncated": false, + "block": 1, + "row": 12170 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/v8.d.ts", + "sha256": "da86ee9a2f09a4583db1d5e37815894967e1f694ad9f3c25e84e0e4d40411e14", + "language": "TypeScript", + "lines": 191, + "truncated": false, + "block": 1, + "row": 12150 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/vm.d.ts", + "sha256": "141a943e5690105898a67537a470f70b56d0e183441b56051d929e902376b7b2", + "language": "TypeScript", + "lines": 156, + "truncated": false, + "block": 1, + "row": 12145 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/wasi.d.ts", + "sha256": "780058f4a804c8bdcdd2f60e7af64b2bc57d149c1586ee3db732a84d659a50bf", + "language": "TypeScript", + "lines": 90, + "truncated": false, + "block": 1, + "row": 12119 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/worker_threads.d.ts", + "sha256": "ddc086b1adac44e2fccf55422da1e90fa970e659d77f99712422a421564b4877", + "language": "TypeScript", + "lines": 242, + "truncated": false, + "block": 1, + "row": 12166 + }, + { + "path": "ServerClient_FKModel/node_modules/@types/node/zlib.d.ts", + "sha256": "515ef1d99036ff0dafa5bf738e02222edea94e0d97a0aa0ff277ac5e96b57977", + "language": "TypeScript", + "lines": 365, + "truncated": false, + "block": 1, + "row": 12173 + }, + { + "path": "ServerClient_FKModel/node_modules/accepts/index.js", + "sha256": "be2decbd50610e8f995c1e312ee4dd6d7c1244cfdf03ee4c4a3da68e572dada1", + "language": "JavaScript", + "lines": 238, + "truncated": false, + "block": 1, + "row": 1303 + }, + { + "path": "ServerClient_FKModel/node_modules/ansi-regex/index.js", + "sha256": "0f78062e714965d168fb51f1cb507aa95dd6270b563d04679adf2506245a62b3", + "language": "JavaScript", + "lines": 4, + "truncated": false, + "block": 1, + "row": 558 + }, + { + "path": "ServerClient_FKModel/node_modules/aproba/index.js", + "sha256": "df0dbeaddd66465687a5b4c4ec28bdade1343e416cabefce7048565584571a2a", + "language": "JavaScript", + "lines": 105, + "truncated": false, + "block": 1, + "row": 1234 + }, + { + "path": "ServerClient_FKModel/node_modules/are-we-there-yet/index.js", + "sha256": "7a427679a9b245f02d66bb09aeaa5337bdff29375d05f3f34e7133b61001bb69", + "language": "JavaScript", + "lines": 4, + "truncated": false, + "block": 1, + "row": 569 + }, + { + "path": "ServerClient_FKModel/node_modules/are-we-there-yet/tracker-base.js", + "sha256": "733f287bde0281daa16a3ee8e006266c37d7aa81a5750c2e2379535fea265977", + "language": "JavaScript", + "lines": 11, + "truncated": false, + "block": 1, + "row": 601 + }, + { + "path": "ServerClient_FKModel/node_modules/are-we-there-yet/tracker-group.js", + "sha256": "beeef4c39fb6b32f2c5b2ef59e9cf09de45d3c2516299d0ed811654a6b1aeb32", + "language": "JavaScript", + "lines": 107, + "truncated": false, + "block": 1, + "row": 1189 + }, + { + "path": "ServerClient_FKModel/node_modules/are-we-there-yet/tracker-stream.js", + "sha256": "e550b2d2ee5720b7b140a73b625d1cef6550152b1edbd7264488c3bd54611b6f", + "language": "JavaScript", + "lines": 36, + "truncated": false, + "block": 1, + "row": 850 + }, + { + "path": "ServerClient_FKModel/node_modules/are-we-there-yet/tracker.js", + "sha256": "10abe0873555228627d7a4098aa104cb94fc609fc237c2061d6c25011dab0117", + "language": "JavaScript", + "lines": 30, + "truncated": false, + "block": 1, + "row": 789 + }, + { + "path": "ServerClient_FKModel/node_modules/array-flatten/array-flatten.js", + "sha256": "766ca145b6d25e3d60f352a716e8fa1876bcdf362c0767c360cf24f335bc281e", + "language": "JavaScript", + "lines": 64, + "truncated": false, + "block": 1, + "row": 919 + }, + { + "path": "ServerClient_FKModel/node_modules/base64-arraybuffer/lib/base64-arraybuffer.js", + "sha256": "756e9c9e4b63048c99e9bbfdbd1a76ce5ad3193cecf94a4232ced8fdf1732607", + "language": "JavaScript", + "lines": 59, + "truncated": false, + "block": 1, + "row": 1006 + }, + { + "path": "ServerClient_FKModel/node_modules/base64-js/base64js.min.js", + "sha256": "d2e82495607abf54f16e21de04d90ba9ce1605451667d88425babece988f148b", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 1088 + }, + { + "path": "ServerClient_FKModel/node_modules/base64-js/index.d.ts", + "sha256": "96da6c81cd788939a7cf6546ea1f65ab5ca38952e5bd7d8c284bfe1f3c22dce7", + "language": "TypeScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 12012 + }, + { + "path": "ServerClient_FKModel/node_modules/base64-js/index.js", + "sha256": "829eadd8a1a441d25be0cb93b00e16a0d0c20fd294db95d8f2ed87e6954b7182", + "language": "JavaScript", + "lines": 150, + "truncated": false, + "block": 1, + "row": 1232 + }, + { + "path": "ServerClient_FKModel/node_modules/base64id/lib/base64id.js", + "sha256": "b22f3bccc756717cccf3841102c662960ec5831c3600c7a8d8c2d8ceade168fa", + "language": "JavaScript", + "lines": 103, + "truncated": false, + "block": 1, + "row": 1106 + }, + { + "path": "ServerClient_FKModel/node_modules/bindings/bindings.js", + "sha256": "8e32a0d37f20bd6f7d5bdbf99d041aa27be47cbbe5172ac13ebf7380a10b3bf6", + "language": "JavaScript", + "lines": 221, + "truncated": false, + "block": 1, + "row": 1327 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/BufferList.js", + "sha256": "cb21ad5d2dd255e2195460ecd5a0bdd65cff0adee2a9fd6c860951c22c9fd4b8", + "language": "JavaScript", + "lines": 396, + "truncated": false, + "block": 1, + "row": 1425 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/bl.js", + "sha256": "71e59aeed4af10ad4268bb35e4c51fe89c640ea9a3f1a9cb597594b02376e249", + "language": "JavaScript", + "lines": 84, + "truncated": false, + "block": 1, + "row": 1058 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/node_modules/inherits/inherits.js", + "sha256": "bb380f32bef5feb18678f0f45f88073fed5d7a0069a309132cb2080cd553d5c7", + "language": "JavaScript", + "lines": 9, + "truncated": false, + "block": 1, + "row": 588 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/node_modules/inherits/inherits_browser.js", + "sha256": "ad322a7b1dec60f3d2ebda2091816469efb55b567d241cf3cf0fa4c5a4afe500", + "language": "JavaScript", + "lines": 27, + "truncated": false, + "block": 1, + "row": 751 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/node_modules/readable-stream/errors-browser.js", + "sha256": "346033597378d23e59068d120d6257f7cd85ae88c40b1f85c3329cece0d119c4", + "language": "JavaScript", + "lines": 127, + "truncated": false, + "block": 1, + "row": 1249 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/node_modules/readable-stream/errors.js", + "sha256": "7028cca95b2f124345bd5b816e0d8184e7b7d208fe0aa76eb38df43e8644fd03", + "language": "JavaScript", + "lines": 116, + "truncated": false, + "block": 1, + "row": 1223 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/node_modules/readable-stream/experimentalWarning.js", + "sha256": "5f9beff594347ba6765b806ec36e25699be1407627e2ee91be5d609e40baacb8", + "language": "JavaScript", + "lines": 17, + "truncated": false, + "block": 1, + "row": 689 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/node_modules/readable-stream/lib/_stream_duplex.js", + "sha256": "c3d976062b770b4a88c91d244557bbe9a828b55dc2de1f9ac85c2d5e909389c4", + "language": "JavaScript", + "lines": 139, + "truncated": false, + "block": 1, + "row": 1265 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/node_modules/readable-stream/lib/_stream_passthrough.js", + "sha256": "14475641ec1d85dcbf95e2555fedb04bf02f8482e08822a5a09b01ddc6389f5f", + "language": "JavaScript", + "lines": 39, + "truncated": false, + "block": 1, + "row": 996 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/node_modules/readable-stream/lib/_stream_readable.js", + "sha256": "c8d010d85186209997a60b3cf1b653a77a88490a3e11e015c2b5eb2d56c30fe7", + "language": "JavaScript", + "lines": 1124, + "truncated": false, + "block": 1, + "row": 1522 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/node_modules/readable-stream/lib/_stream_transform.js", + "sha256": "d85bb2b8c6ba3cf71e6ae759342df89dee95981c6856e9f4dc0b85d70cf60b59", + "language": "JavaScript", + "lines": 201, + "truncated": false, + "block": 1, + "row": 1388 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/node_modules/readable-stream/lib/_stream_writable.js", + "sha256": "e97dc3728c1ba71414f84cb44cb4c4ecefdf0fdd1c3242a5f447e08ed20cca6f", + "language": "JavaScript", + "lines": 697, + "truncated": false, + "block": 1, + "row": 1496 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/node_modules/readable-stream/lib/internal/streams/async_iterator.js", + "sha256": "3a752f2fcb0de353265f2d4928126183b5a08d9c9eb6aa4fab74808286e69844", + "language": "JavaScript", + "lines": 207, + "truncated": false, + "block": 1, + "row": 1324 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/node_modules/readable-stream/lib/internal/streams/buffer_list.js", + "sha256": "10f06e02f00b1e4c28afd01cd4b1ecf280c75c59e97fb8611ac014bdd614d2ad", + "language": "JavaScript", + "lines": 210, + "truncated": false, + "block": 1, + "row": 1344 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/node_modules/readable-stream/lib/internal/streams/destroy.js", + "sha256": "54c7b9c8319baeffa83840ae559b5910f530bdca530292d9be190236f219a7b3", + "language": "JavaScript", + "lines": 105, + "truncated": false, + "block": 1, + "row": 1182 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/node_modules/readable-stream/lib/internal/streams/end-of-stream.js", + "sha256": "75da6b5b0634012017a6252c6e130335de7775e5a02f10817d02af47afa8bb8d", + "language": "JavaScript", + "lines": 104, + "truncated": false, + "block": 1, + "row": 1179 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/node_modules/readable-stream/lib/internal/streams/from-browser.js", + "sha256": "4b4404c7bd6f66a2175cb7a29c60ce4395c055775ec45eaa35af4357656f604f", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 548 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/node_modules/readable-stream/lib/internal/streams/from.js", + "sha256": "9c67e32e4f371b72c83265a077c7e317866170134ff8dca4cc24313c5037426b", + "language": "JavaScript", + "lines": 64, + "truncated": false, + "block": 1, + "row": 1184 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/node_modules/readable-stream/lib/internal/streams/pipeline.js", + "sha256": "16576b2011c78d0c5ceccdeba7451e83e1bd86f2c3f31c05de7df4ccfb149c2a", + "language": "JavaScript", + "lines": 97, + "truncated": false, + "block": 1, + "row": 1113 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/node_modules/readable-stream/lib/internal/streams/state.js", + "sha256": "cdbed99634b523be655225df1547cd00295e3041cb02848c652ddad5e6787e49", + "language": "JavaScript", + "lines": 27, + "truncated": false, + "block": 1, + "row": 749 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/node_modules/readable-stream/lib/internal/streams/stream-browser.js", + "sha256": "72d46a15491627d8fb1489a47d03583cfe5c21902918016ab532b53e615e5a9a", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 524 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/node_modules/readable-stream/lib/internal/streams/stream.js", + "sha256": "1e7903927df33aadb3659ecce55266c9c851da65ce6c8b723a60a305c1c5422c", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 516 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/node_modules/readable-stream/readable-browser.js", + "sha256": "c4ff3ea62ef65a2c68ea721dcbd58b621150660facd02be95ebfc556c4dd123f", + "language": "JavaScript", + "lines": 9, + "truncated": false, + "block": 1, + "row": 692 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/node_modules/readable-stream/readable.js", + "sha256": "2944f1d3c8c5d5c5e07e7c30d6cbef5fc37440b7c73de47aeb37fa8424f04bf1", + "language": "JavaScript", + "lines": 16, + "truncated": false, + "block": 1, + "row": 745 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/test/convert.js", + "sha256": "8f53ff4881443e25976313de40c5974e984016f364d0cac1c71425b13b000090", + "language": "JavaScript", + "lines": 21, + "truncated": false, + "block": 1, + "row": 716 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/test/indexOf.js", + "sha256": "3213bfac8bfd094eb2425ad0df60b51fa6d16151ccd00d031d21071cb8bff747", + "language": "JavaScript", + "lines": 492, + "truncated": false, + "block": 1, + "row": 1462 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/test/isBufferList.js", + "sha256": "d099739e2a6083f31a2295ff08ca074e74e7352d3ceb694661da453e45f917ec", + "language": "JavaScript", + "lines": 32, + "truncated": false, + "block": 1, + "row": 702 + }, + { + "path": "ServerClient_FKModel/node_modules/bl/test/test.js", + "sha256": "6388b88ff64c549bc1fd4c564d719ea2cf8c5920095f450b082c36d4ec5cb3a9", + "language": "JavaScript", + "lines": 869, + "truncated": false, + "block": 1, + "row": 1493 + }, + { + "path": "ServerClient_FKModel/node_modules/body-parser/index.js", + "sha256": "d584d690e2a5ffa3b9e7f13db3939a344d34f7ca38dc09b45af7c2fa7fe454e4", + "language": "JavaScript", + "lines": 157, + "truncated": false, + "block": 1, + "row": 1143 + }, + { + "path": "ServerClient_FKModel/node_modules/body-parser/lib/read.js", + "sha256": "61a96c9ad70f888cf3cdcb511118d150447ea3f14f7b7ba776a0e1cd70084dd7", + "language": "JavaScript", + "lines": 181, + "truncated": false, + "block": 1, + "row": 1231 + }, + { + "path": "ServerClient_FKModel/node_modules/body-parser/lib/types/json.js", + "sha256": "a34efbd3438dcd0a0060b4bda8ea75acaec3ae2b1a49460e25af950d15562276", + "language": "JavaScript", + "lines": 230, + "truncated": false, + "block": 1, + "row": 1290 + }, + { + "path": "ServerClient_FKModel/node_modules/body-parser/lib/types/raw.js", + "sha256": "4e9cc80a7ee8bd667c68c264b4c374b28e731246ddb6ec22c3968daf837e30a2", + "language": "JavaScript", + "lines": 101, + "truncated": false, + "block": 1, + "row": 1037 + }, + { + "path": "ServerClient_FKModel/node_modules/body-parser/lib/types/text.js", + "sha256": "54a6e8ef720b06a300b21f6c60387805dec743a64154784a609dfe8c6860776a", + "language": "JavaScript", + "lines": 121, + "truncated": false, + "block": 1, + "row": 1097 + }, + { + "path": "ServerClient_FKModel/node_modules/body-parser/lib/types/urlencoded.js", + "sha256": "752717d87aad57451638af2073b04eba964f348910c0bcf0070c43e732de5eb2", + "language": "JavaScript", + "lines": 284, + "truncated": false, + "block": 1, + "row": 1317 + }, + { + "path": "ServerClient_FKModel/node_modules/buffer/index.d.ts", + "sha256": "8e9c23ba78aabc2e0a27033f18737a6df754067731e69dc5f52823957d60a4b6", + "language": "TypeScript", + "lines": 186, + "truncated": false, + "block": 1, + "row": 12159 + }, + { + "path": "ServerClient_FKModel/node_modules/buffer/index.js", + "sha256": "9fab6e5f345b42e0ab83cac4c0790d40b77b21ad6af47ace7364f3f6a1f8d8d4", + "language": "JavaScript", + "lines": 1817, + "truncated": false, + "block": 1, + "row": 1535 + }, + { + "path": "ServerClient_FKModel/node_modules/bytes/index.js", + "sha256": "0b09645f3817469ba5d8b7047a54db6dd431586a2c670ea8d8c31c7880f1ef08", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1209 + }, + { + "path": "ServerClient_FKModel/node_modules/chownr/chownr.js", + "sha256": "529b285703d29b8ab31ead64bd1f64146bac12147cc09ceb4b25f0db87a12c96", + "language": "JavaScript", + "lines": 167, + "truncated": false, + "block": 1, + "row": 1254 + }, + { + "path": "ServerClient_FKModel/node_modules/code-point-at/index.js", + "sha256": "5754f556e5e9888233cbef45872a7f8b49419527403a4fd5c77b99278b389fcd", + "language": "JavaScript", + "lines": 32, + "truncated": false, + "block": 1, + "row": 717 + }, + { + "path": "ServerClient_FKModel/node_modules/component-emitter/index.js", + "sha256": "8e6ad44d4b87d2edd2abbb6cea713a7947a7c43b8cd2f759073d3a5a12d4e6a7", + "language": "JavaScript", + "lines": 175, + "truncated": false, + "block": 1, + "row": 1192 + }, + { + "path": "ServerClient_FKModel/node_modules/console-control-strings/index.js", + "sha256": "fc557c23f6b2effebc75878c7185424b2dd436df2df137791fdc6816ceec0ff2", + "language": "JavaScript", + "lines": 125, + "truncated": false, + "block": 1, + "row": 1104 + }, + { + "path": "ServerClient_FKModel/node_modules/content-disposition/index.js", + "sha256": "15eb8fd0bc070ec9b43259f4f7df49dc805f1e6837f3c9e547ff0b424c482ded", + "language": "JavaScript", + "lines": 458, + "truncated": false, + "block": 1, + "row": 1435 + }, + { + "path": "ServerClient_FKModel/node_modules/content-type/index.js", + "sha256": "85ffe59d050974725c044a0cead644db76f4bffe823753723670244b90629c5b", + "language": "JavaScript", + "lines": 222, + "truncated": false, + "block": 1, + "row": 1288 + }, + { + "path": "ServerClient_FKModel/node_modules/cookie-signature/index.js", + "sha256": "8d762862020064468b4af17e561ee1ee29d9d55311a1c19d958c4ff2be912963", + "language": "JavaScript", + "lines": 51, + "truncated": false, + "block": 1, + "row": 929 + }, + { + "path": "ServerClient_FKModel/node_modules/cookie/index.js", + "sha256": "7b3aa39bea0be25117f6d08ed828fd04bd10b7f2d556c4cfef51fcfa76be4370", + "language": "JavaScript", + "lines": 198, + "truncated": false, + "block": 1, + "row": 1239 + }, + { + "path": "ServerClient_FKModel/node_modules/core-util-is/lib/util.js", + "sha256": "6916ffc83b502963dd8f619ce457a731cc1730e2aaaf77fa3f8bcbb60345ca9d", + "language": "JavaScript", + "lines": 107, + "truncated": false, + "block": 1, + "row": 1168 + }, + { + "path": "ServerClient_FKModel/node_modules/core-util-is/test.js", + "sha256": "d2e92e044bf229aa38932172f4d0dde5505b6499d013b6c8b9f73d0d3d620d1b", + "language": "JavaScript", + "lines": 68, + "truncated": false, + "block": 1, + "row": 1069 + }, + { + "path": "ServerClient_FKModel/node_modules/cors/lib/index.js", + "sha256": "8d35c93d6ea72eb675038fed47b7d3cb2407e70ea212d6130e7ba55ed8f67df3", + "language": "JavaScript", + "lines": 238, + "truncated": false, + "block": 1, + "row": 1352 + }, + { + "path": "ServerClient_FKModel/node_modules/debug/karma.conf.js", + "sha256": "2430869adb61a5e24a3612110a9b49a948e6db43ab7e947c003a9c19c478e609", + "language": "JavaScript", + "lines": 70, + "truncated": false, + "block": 1, + "row": 1013 + }, + { + "path": "ServerClient_FKModel/node_modules/debug/node.js", + "sha256": "996b381f353555cb172ebb2802bb2a7323442ff67b7b530cc26834058d7f31a2", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 519 + }, + { + "path": "ServerClient_FKModel/node_modules/debug/src/browser.js", + "sha256": "0144ab6a52b9330c567de11a5c3a4aea35cdac47a4c106482aa24ae8054cdc6f", + "language": "JavaScript", + "lines": 185, + "truncated": false, + "block": 1, + "row": 1286 + }, + { + "path": "ServerClient_FKModel/node_modules/debug/src/debug.js", + "sha256": "d8d1c1d6c387ab67c3f28d78fd0b20b9becd69442db9d3efe110ca464b509c8a", + "language": "JavaScript", + "lines": 202, + "truncated": false, + "block": 1, + "row": 1263 + }, + { + "path": "ServerClient_FKModel/node_modules/debug/src/index.js", + "sha256": "9a34fedeb2d269c46ed94e6f13039eb0d16d866dd460ec66fa3acd78122fa9fe", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 595 + }, + { + "path": "ServerClient_FKModel/node_modules/debug/src/inspector-log.js", + "sha256": "949ae67ec1b655694f83dce57d47d9d77234f9e7d698616932a90e69c7afee91", + "language": "JavaScript", + "lines": 15, + "truncated": false, + "block": 1, + "row": 643 + }, + { + "path": "ServerClient_FKModel/node_modules/debug/src/node.js", + "sha256": "a3e83594a4ce88997e2e4fc66bc942b17b9d736290ad62560c7f09d6d0989ad0", + "language": "JavaScript", + "lines": 248, + "truncated": false, + "block": 1, + "row": 1330 + }, + { + "path": "ServerClient_FKModel/node_modules/decompress-response/index.d.ts", + "sha256": "75e0e9ccb1233b2897aada4bf477a030e247bf2ccaf4b978ed42db225ac8edcc", + "language": "TypeScript", + "lines": 29, + "truncated": false, + "block": 1, + "row": 12057 + }, + { + "path": "ServerClient_FKModel/node_modules/decompress-response/index.js", + "sha256": "a9f58e84017f49d7c3932d2e46f5dede98b19e38f2c8f0c694d3be586769afb9", + "language": "JavaScript", + "lines": 40, + "truncated": false, + "block": 1, + "row": 872 + }, + { + "path": "ServerClient_FKModel/node_modules/deep-extend/index.js", + "sha256": "3589a8446276886aa54f8dda47d0d12be90fb167925559fab4a906ddfca6f91f", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 522 + }, + { + "path": "ServerClient_FKModel/node_modules/deep-extend/lib/deep-extend.js", + "sha256": "87aadac5b3cc8081b570a243c17c575c195c4ae642e98834495291fa626ed9d6", + "language": "JavaScript", + "lines": 150, + "truncated": false, + "block": 1, + "row": 1256 + }, + { + "path": "ServerClient_FKModel/node_modules/delegates/index.js", + "sha256": "db3ee6ab2fdabdffc19d5df0cf9461488329379cbb0640eb73203a35197960aa", + "language": "JavaScript", + "lines": 121, + "truncated": false, + "block": 1, + "row": 1060 + }, + { + "path": "ServerClient_FKModel/node_modules/delegates/test/index.js", + "sha256": "36d8a2d16e8138fa52ab1fd35348b8591414edd6ee318dc1871fcb51a932dda4", + "language": "JavaScript", + "lines": 94, + "truncated": false, + "block": 1, + "row": 1025 + }, + { + "path": "ServerClient_FKModel/node_modules/depd/index.js", + "sha256": "244dbbca14b8aa9c9b6be04912283ab704b92f11dcb9b23beb2ba81402fecc99", + "language": "JavaScript", + "lines": 522, + "truncated": false, + "block": 1, + "row": 1436 + }, + { + "path": "ServerClient_FKModel/node_modules/depd/lib/browser/index.js", + "sha256": "10b4d4a4e9d14e9e6a5ab7ced64405ef90e6bec94d479a8e223cbba88828ad79", + "language": "JavaScript", + "lines": 77, + "truncated": false, + "block": 1, + "row": 980 + }, + { + "path": "ServerClient_FKModel/node_modules/depd/lib/compat/callsite-tostring.js", + "sha256": "702ab02dc767bd351fca5f9faa659327f22f4cfd2684e0a33b23447838f5773b", + "language": "JavaScript", + "lines": 103, + "truncated": false, + "block": 1, + "row": 1090 + }, + { + "path": "ServerClient_FKModel/node_modules/depd/lib/compat/event-listener-count.js", + "sha256": "5dc8bef6d7641158ccd485fece7fcf46566fe95b42e40a48ded7ea43366f0968", + "language": "JavaScript", + "lines": 22, + "truncated": false, + "block": 1, + "row": 632 + }, + { + "path": "ServerClient_FKModel/node_modules/depd/lib/compat/index.js", + "sha256": "76baf83317ac81045cefb9fcc8ec0d8e47dd0cfcbadd592f480349412e161861", + "language": "JavaScript", + "lines": 79, + "truncated": false, + "block": 1, + "row": 966 + }, + { + "path": "ServerClient_FKModel/node_modules/destroy/index.js", + "sha256": "9d23fb0d80472356bf635b3e4fc46909914c34c930eafc7b8348d7e3653fcf0c", + "language": "JavaScript", + "lines": 75, + "truncated": false, + "block": 1, + "row": 883 + }, + { + "path": "ServerClient_FKModel/node_modules/detect-libc/bin/detect-libc.js", + "sha256": "99a4f0b6ebe4b213e904a3563973da0b98caba8b7f2877fbbe5084aeadeeb307", + "language": "JavaScript", + "lines": 18, + "truncated": false, + "block": 1, + "row": 642 + }, + { + "path": "ServerClient_FKModel/node_modules/detect-libc/lib/detect-libc.js", + "sha256": "f3d658268111d4ddbc38b1c4cc67bd49ff0418cd7b0110e0ba42b530cdf80dd6", + "language": "JavaScript", + "lines": 92, + "truncated": false, + "block": 1, + "row": 1085 + }, + { + "path": "ServerClient_FKModel/node_modules/ee-first/index.js", + "sha256": "29d3cccddc7148f48715bfc94eb6f7b9f9132a5ecb704b9d4b713de87e7603dd", + "language": "JavaScript", + "lines": 95, + "truncated": false, + "block": 1, + "row": 1003 + }, + { + "path": "ServerClient_FKModel/node_modules/encodeurl/index.js", + "sha256": "1d0a4e941c1504dcd9bc6cfbb77f7b44d93e56a29cba6f2ccebd78d501a51c16", + "language": "JavaScript", + "lines": 60, + "truncated": false, + "block": 1, + "row": 990 + }, + { + "path": "ServerClient_FKModel/node_modules/end-of-stream/index.js", + "sha256": "3e912df226ee90ee3edc5ff69cd3e8313fa1da13795e10fb0b0f05727bdabb58", + "language": "JavaScript", + "lines": 94, + "truncated": false, + "block": 1, + "row": 1145 + }, + { + "path": "ServerClient_FKModel/node_modules/engine.io-parser/lib/commons.js", + "sha256": "90e87cd1e95e833ee3ad0026eee6a4ad0cb8e14fe5c240e73a11522c434ef125", + "language": "JavaScript", + "lines": 21, + "truncated": false, + "block": 1, + "row": 701 + }, + { + "path": "ServerClient_FKModel/node_modules/engine.io-parser/lib/decodePacket.browser.js", + "sha256": "7be91bec803ce03bb8605c409818d91e25f740c136d13f2d1eef08b2be4b1333", + "language": "JavaScript", + "lines": 57, + "truncated": false, + "block": 1, + "row": 968 + }, + { + "path": "ServerClient_FKModel/node_modules/engine.io-parser/lib/decodePacket.js", + "sha256": "a6bc1fbcd18c607f6c676a65477c159da95717e75a50588e5c9210aa6dc093ca", + "language": "JavaScript", + "lines": 51, + "truncated": false, + "block": 1, + "row": 940 + }, + { + "path": "ServerClient_FKModel/node_modules/engine.io-parser/lib/encodePacket.browser.js", + "sha256": "7bed43418982b3a0cb58eaaa28bf2a93936cdc51a5701e6d716dc25a943cb62e", + "language": "JavaScript", + "lines": 46, + "truncated": false, + "block": 1, + "row": 957 + }, + { + "path": "ServerClient_FKModel/node_modules/engine.io-parser/lib/encodePacket.js", + "sha256": "5a731b3504b9325bf15f2db502c6a50820cb12d5326bfa0e2506fa65da9d1f9e", + "language": "JavaScript", + "lines": 27, + "truncated": false, + "block": 1, + "row": 786 + }, + { + "path": "ServerClient_FKModel/node_modules/engine.io-parser/lib/index.js", + "sha256": "d51e0c4e6265fa3f70303c44094d0a2c08541096d5087fb885648d55ea6999d8", + "language": "JavaScript", + "lines": 42, + "truncated": false, + "block": 1, + "row": 925 + }, + { + "path": "ServerClient_FKModel/node_modules/engine.io/lib/engine.io.js", + "sha256": "d91490dcfdb322e77be2b9aa64a8c7efe91388ba171e8c9b6711230fe29a3648", + "language": "JavaScript", + "lines": 127, + "truncated": false, + "block": 1, + "row": 1107 + }, + { + "path": "ServerClient_FKModel/node_modules/engine.io/lib/parser-v3/index.js", + "sha256": "44f4410ed268fd3d33a9880e4baab68947c82ce1d40749ab91fb0bc48f58237a", + "language": "JavaScript", + "lines": 483, + "truncated": false, + "block": 1, + "row": 1440 + }, + { + "path": "ServerClient_FKModel/node_modules/engine.io/lib/parser-v3/utf8.js", + "sha256": "fbe7aca6729b24a15b037c3af8677e47eda9cdf39eb8ec22a603154fb5f93b98", + "language": "JavaScript", + "lines": 210, + "truncated": false, + "block": 1, + "row": 1302 + }, + { + "path": "ServerClient_FKModel/node_modules/engine.io/lib/server.js", + "sha256": "c9a7d32116b66035ac4fac0ec44b88c22b3010c75c5dcf7cdd531de6f290d3d8", + "language": "JavaScript", + "lines": 598, + "truncated": false, + "block": 1, + "row": 1470 + }, + { + "path": "ServerClient_FKModel/node_modules/engine.io/lib/socket.js", + "sha256": "13c96b51482e2730f3a31a1dced580186ae5c7aaf37f67afd53b2dd7357ed33a", + "language": "JavaScript", + "lines": 522, + "truncated": false, + "block": 1, + "row": 1452 + }, + { + "path": "ServerClient_FKModel/node_modules/engine.io/lib/transport.js", + "sha256": "c8186bf4c0ce41f141b378ff495be1c8d9122bd5f517eeb372ff06094576b2f8", + "language": "JavaScript", + "lines": 110, + "truncated": false, + "block": 1, + "row": 1076 + }, + { + "path": "ServerClient_FKModel/node_modules/engine.io/lib/transports/index.js", + "sha256": "1d4f5429eb401e0bee740a80079f3e8a3f472e4ebc3a6b1a0a365f021e5a8335", + "language": "JavaScript", + "lines": 31, + "truncated": false, + "block": 1, + "row": 690 + }, + { + "path": "ServerClient_FKModel/node_modules/engine.io/lib/transports/polling-jsonp.js", + "sha256": "be25b5d4bf26dc0049d109f7853a4f1166e74c5aa376fa739021f426a1a5351a", + "language": "JavaScript", + "lines": 58, + "truncated": false, + "block": 1, + "row": 979 + }, + { + "path": "ServerClient_FKModel/node_modules/engine.io/lib/transports/polling.js", + "sha256": "451fe4cb044468f10264bce33ebdde92db4a0cfe3fee162f068951eb1e7200e3", + "language": "JavaScript", + "lines": 393, + "truncated": false, + "block": 1, + "row": 1404 + }, + { + "path": "ServerClient_FKModel/node_modules/engine.io/lib/transports/websocket.js", + "sha256": "a423a3cf6f6f8f2a8ba5ddc92f4de5f62ac514ca8754d3f8bb58e87df9234e15", + "language": "JavaScript", + "lines": 116, + "truncated": false, + "block": 1, + "row": 1095 + }, + { + "path": "ServerClient_FKModel/node_modules/engine.io/node_modules/cookie/index.js", + "sha256": "7cfd008fe13488830adfe6953df6916a6e5350acdbd03275901bbf302affd8ea", + "language": "JavaScript", + "lines": 202, + "truncated": false, + "block": 1, + "row": 1242 + }, + { + "path": "ServerClient_FKModel/node_modules/engine.io/node_modules/debug/src/browser.js", + "sha256": "4e3dc6d0e1db58a0d74206b443f35582d3b717be56a0f6d030c34af6c2ad9f62", + "language": "JavaScript", + "lines": 269, + "truncated": false, + "block": 1, + "row": 1329 + }, + { + "path": "ServerClient_FKModel/node_modules/engine.io/node_modules/debug/src/common.js", + "sha256": "ae6855e9f5ef6687aa8f76e69dd1854f1b99985146434daff310150083cfde02", + "language": "JavaScript", + "lines": 261, + "truncated": false, + "block": 1, + "row": 1332 + }, + { + "path": "ServerClient_FKModel/node_modules/engine.io/node_modules/debug/src/index.js", + "sha256": "aa127ff1752b7d9c7415c5c7bb6994d9aa722b81bcbcab4bd48316b013d23bf3", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 616 + }, + { + "path": "ServerClient_FKModel/node_modules/engine.io/node_modules/debug/src/node.js", + "sha256": "f237adcb52849de7c128f57e0468b52353c529a6c8341810477c0e7144359559", + "language": "JavaScript", + "lines": 263, + "truncated": false, + "block": 1, + "row": 1283 + }, + { + "path": "ServerClient_FKModel/node_modules/engine.io/node_modules/ms/index.js", + "sha256": "55986972f5f3c9446f876c576e1cd30fd4f04cd26527efbb5ad834637c740e4c", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1169 + }, + { + "path": "ServerClient_FKModel/node_modules/escape-html/index.js", + "sha256": "42a7f91883d0c5ce9292dda4e017e1f8664d34b09276d89fb6f3859c29d1ca9b", + "language": "JavaScript", + "lines": 78, + "truncated": false, + "block": 1, + "row": 956 + }, + { + "path": "ServerClient_FKModel/node_modules/etag/index.js", + "sha256": "a95a23b9a60726a4522b768c88ad73a7ea2c539d220068227f5510a8ee2008ae", + "language": "JavaScript", + "lines": 131, + "truncated": false, + "block": 1, + "row": 1120 + }, + { + "path": "ServerClient_FKModel/node_modules/expand-template/index.js", + "sha256": "2f3bbc7d7e54e16d91683936a7fa70db16e2cf1b4c8c72451f3d3a6a40e0f701", + "language": "JavaScript", + "lines": 26, + "truncated": false, + "block": 1, + "row": 731 + }, + { + "path": "ServerClient_FKModel/node_modules/expand-template/test.js", + "sha256": "906dae046928f840df7693081d7dc8f5f062773badb6658e201a382b97f7eda0", + "language": "JavaScript", + "lines": 67, + "truncated": false, + "block": 1, + "row": 1020 + }, + { + "path": "ServerClient_FKModel/node_modules/express/index.js", + "sha256": "4d2f5afc192178c5b0dc418d2da5826d52a8b6998771b011aede7fdba9118140", + "language": "JavaScript", + "lines": 11, + "truncated": false, + "block": 1, + "row": 580 + }, + { + "path": "ServerClient_FKModel/node_modules/express/lib/application.js", + "sha256": "2ee440da0ae3bce6c3424037eda81f2ad3b5bae606393b0cc98838afe421a7e2", + "language": "JavaScript", + "lines": 644, + "truncated": false, + "block": 1, + "row": 1457 + }, + { + "path": "ServerClient_FKModel/node_modules/express/lib/express.js", + "sha256": "2f25585c03c3050779c8f5f00597f8653f4fb8a97448ef8ef8cb21e65ba4d15d", + "language": "JavaScript", + "lines": 116, + "truncated": false, + "block": 1, + "row": 1110 + }, + { + "path": "ServerClient_FKModel/node_modules/express/lib/middleware/init.js", + "sha256": "48c1d12f1494b20377fcdeec9056272eff84ed8c081e1e56dc2aea395f77d19c", + "language": "JavaScript", + "lines": 43, + "truncated": false, + "block": 1, + "row": 798 + }, + { + "path": "ServerClient_FKModel/node_modules/express/lib/middleware/query.js", + "sha256": "6edce3963588b42e41942900b24218e665b97df0c0b1c74090b2b934fa68ca08", + "language": "JavaScript", + "lines": 47, + "truncated": false, + "block": 1, + "row": 815 + }, + { + "path": "ServerClient_FKModel/node_modules/express/lib/request.js", + "sha256": "ef5c0c9e61aa1ca77f7301bcdd97bc5151ea435a94928d2b32d4f522e9362f25", + "language": "JavaScript", + "lines": 525, + "truncated": false, + "block": 1, + "row": 1449 + }, + { + "path": "ServerClient_FKModel/node_modules/express/lib/response.js", + "sha256": "76011a43423d015fa15091989e5aeb33bbe6406e39a4d67d4a70291abbdc7c0a", + "language": "JavaScript", + "lines": 1142, + "truncated": false, + "block": 1, + "row": 1511 + }, + { + "path": "ServerClient_FKModel/node_modules/express/lib/router/index.js", + "sha256": "523e4d1c5ae75942782c859a615bc5a0736f7407eec4017c80d9836fbee53632", + "language": "JavaScript", + "lines": 662, + "truncated": false, + "block": 1, + "row": 1461 + }, + { + "path": "ServerClient_FKModel/node_modules/express/lib/router/layer.js", + "sha256": "c90709dcba8d9a6cfd1f2b4ef6d7a22d833e317f0c876d884342cee5a96f8a02", + "language": "JavaScript", + "lines": 181, + "truncated": false, + "block": 1, + "row": 1193 + }, + { + "path": "ServerClient_FKModel/node_modules/express/lib/router/route.js", + "sha256": "955489d45ded1b7e0f26b01ac6a1dc0e017766ec920098234ec80584598274c4", + "language": "JavaScript", + "lines": 216, + "truncated": false, + "block": 1, + "row": 1245 + }, + { + "path": "ServerClient_FKModel/node_modules/express/lib/utils.js", + "sha256": "ed228a1664da0df1ce485d85b2770c33bd50ae81796b1ac9568532a3a9fa6aed", + "language": "JavaScript", + "lines": 306, + "truncated": false, + "block": 1, + "row": 1326 + }, + { + "path": "ServerClient_FKModel/node_modules/express/lib/view.js", + "sha256": "78152ed5428dd5357cb4858afc499fbf46c300cc000b24e145a234f69dbfa141", + "language": "JavaScript", + "lines": 182, + "truncated": false, + "block": 1, + "row": 1197 + }, + { + "path": "ServerClient_FKModel/node_modules/file-uri-to-path/index.d.ts", + "sha256": "46eb38b4f992126135e00159041a6e69e46402e56613bdc891d7b0d28fc31e37", + "language": "TypeScript", + "lines": 2, + "truncated": false, + "block": 1, + "row": 12005 + }, + { + "path": "ServerClient_FKModel/node_modules/file-uri-to-path/index.js", + "sha256": "e62293e871bdd5a7449ff3c7956c9536ec1d2ea7369461de77322b5256bb93e7", + "language": "JavaScript", + "lines": 66, + "truncated": false, + "block": 1, + "row": 1010 + }, + { + "path": "ServerClient_FKModel/node_modules/file-uri-to-path/test/test.js", + "sha256": "223c25dba6fefbb7cb491b026a32f070b1425475d3cd2d04627be5d71a07fd38", + "language": "JavaScript", + "lines": 24, + "truncated": false, + "block": 1, + "row": 729 + }, + { + "path": "ServerClient_FKModel/node_modules/finalhandler/index.js", + "sha256": "e1e178afccce64f96a8d0fb72030f636ecf9c2b8a5588ef9b2a72cb30d2ab20c", + "language": "JavaScript", + "lines": 331, + "truncated": false, + "block": 1, + "row": 1350 + }, + { + "path": "ServerClient_FKModel/node_modules/forwarded/index.js", + "sha256": "fa9e9b3f81a6de8848e446678ad4f86218e3c683d8086a285b9d8a9f0963f2c3", + "language": "JavaScript", + "lines": 76, + "truncated": false, + "block": 1, + "row": 955 + }, + { + "path": "ServerClient_FKModel/node_modules/fresh/index.js", + "sha256": "85b46ce10c4fba71fb41666586572277f626bbc698266026372941b5267bfb60", + "language": "JavaScript", + "lines": 137, + "truncated": false, + "block": 1, + "row": 1151 + }, + { + "path": "ServerClient_FKModel/node_modules/fs-constants/browser.js", + "sha256": "b575b19b26a6c95048bbb9372440d1a37178a2d4e9ea98115f27121fa804d7ce", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 518 + }, + { + "path": "ServerClient_FKModel/node_modules/fs-constants/index.js", + "sha256": "0018c44a4f4577ed7e94b66d768eab3a822bc96fda9131cfb7e4dea99eb1b9b0", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 532 + }, + { + "path": "ServerClient_FKModel/node_modules/gauge/base-theme.js", + "sha256": "ad22f4a05d105265611188e123e4a7ee07be6d28dc5ef39c98b4f686e7a902a7", + "language": "JavaScript", + "lines": 14, + "truncated": false, + "block": 1, + "row": 659 + }, + { + "path": "ServerClient_FKModel/node_modules/gauge/error.js", + "sha256": "2957dc2045a462606df224526d880fcc7a472bc992a74b0db9b23bf1984a9b20", + "language": "JavaScript", + "lines": 24, + "truncated": false, + "block": 1, + "row": 720 + }, + { + "path": "ServerClient_FKModel/node_modules/gauge/has-color.js", + "sha256": "921ba24f2aa18494f12c19e48ee6f9713d5ec158c86cd529bac26cb18d26f6e5", + "language": "JavaScript", + "lines": 12, + "truncated": false, + "block": 1, + "row": 609 + }, + { + "path": "ServerClient_FKModel/node_modules/gauge/index.js", + "sha256": "f92c0e6d52b4445754aaf90fdcc6bd603aa3269caabc71c40dbf660088880fcf", + "language": "JavaScript", + "lines": 233, + "truncated": false, + "block": 1, + "row": 1366 + }, + { + "path": "ServerClient_FKModel/node_modules/gauge/plumbing.js", + "sha256": "0db8c804e8d5b02a1f7eff072d3d7701f2cc5db341074bbe1e4bdd6ca8e3aa95", + "language": "JavaScript", + "lines": 48, + "truncated": false, + "block": 1, + "row": 936 + }, + { + "path": "ServerClient_FKModel/node_modules/gauge/process.js", + "sha256": "742bd2d12a7786e595955c8a846dbefe88591df39c2659491bddadbb8ed7dae6", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 544 + }, + { + "path": "ServerClient_FKModel/node_modules/gauge/progress-bar.js", + "sha256": "0e7f113040c0380731e6b6597a74d7909f4c7a25e3a8909cb06afcd96d95abdc", + "language": "JavaScript", + "lines": 35, + "truncated": false, + "block": 1, + "row": 864 + }, + { + "path": "ServerClient_FKModel/node_modules/gauge/render-template.js", + "sha256": "291274e3c3e3f680b248935dcd5296c4f76b2e592045231a6d5347782d57dbeb", + "language": "JavaScript", + "lines": 181, + "truncated": false, + "block": 1, + "row": 1316 + }, + { + "path": "ServerClient_FKModel/node_modules/gauge/set-immediate.js", + "sha256": "90dbb2e127d9b971731b2094b2516a463243e4074367dd4129fe2849ef598514", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 1, + "row": 561 + }, + { + "path": "ServerClient_FKModel/node_modules/gauge/set-interval.js", + "sha256": "19d2fa52118a39a7810efeb7bce45418f3e55ee7b445c85811d07a2f73b7bbb7", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 547 + }, + { + "path": "ServerClient_FKModel/node_modules/gauge/spin.js", + "sha256": "4ddb202944fd4e556edc68107b1a1f33dd25f1910876d2bf04eb5a58ae060c9d", + "language": "JavaScript", + "lines": 5, + "truncated": false, + "block": 1, + "row": 549 + }, + { + "path": "ServerClient_FKModel/node_modules/gauge/template-item.js", + "sha256": "ad544689ab58cb73a30ef89b33a10e3a805b5c22bff8b37f7f0c5b9a48f7e34a", + "language": "JavaScript", + "lines": 73, + "truncated": false, + "block": 1, + "row": 1041 + }, + { + "path": "ServerClient_FKModel/node_modules/gauge/theme-set.js", + "sha256": "3a6960a56ce064192d7ccfe4645c92745ebfc6cdbbce29dc10350ebafa8ab022", + "language": "JavaScript", + "lines": 115, + "truncated": false, + "block": 1, + "row": 1221 + }, + { + "path": "ServerClient_FKModel/node_modules/gauge/themes.js", + "sha256": "aa4a4755d792048d9bffc19f24c8be89f89338e9fba52a580df8bdea18e243a5", + "language": "JavaScript", + "lines": 54, + "truncated": false, + "block": 1, + "row": 985 + }, + { + "path": "ServerClient_FKModel/node_modules/gauge/wide-truncate.js", + "sha256": "9cda29fe56643215b87710e4d99df6a2a78101927d99047ee69dfb114017138d", + "language": "JavaScript", + "lines": 25, + "truncated": false, + "block": 1, + "row": 790 + }, + { + "path": "ServerClient_FKModel/node_modules/github-from-package/example/url.js", + "sha256": "d4897228fa19f8b23e353331990ade0ed9ec285e5ec051288cbc737f315cfeb6", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 546 + }, + { + "path": "ServerClient_FKModel/node_modules/github-from-package/index.js", + "sha256": "b0ff829d7fd3310f3fa12a28f91d14d20cd1492758c0ee6db0ab3f068bff5806", + "language": "JavaScript", + "lines": 17, + "truncated": false, + "block": 1, + "row": 667 + }, + { + "path": "ServerClient_FKModel/node_modules/github-from-package/test/url.js", + "sha256": "a32f3a5f8f11ef9065514f38999feacb1353b259dece2f0c52719c6739c6e6b2", + "language": "JavaScript", + "lines": 19, + "truncated": false, + "block": 1, + "row": 718 + }, + { + "path": "ServerClient_FKModel/node_modules/has-unicode/index.js", + "sha256": "f7055f40138c028925ca76b74ea5a4041b4d67d2fa4dae2f78c2ec326ebc2bf3", + "language": "JavaScript", + "lines": 16, + "truncated": false, + "block": 1, + "row": 728 + }, + { + "path": "ServerClient_FKModel/node_modules/http-errors/index.js", + "sha256": "045acbd1e3cfb85728771480bf748ffd02217713826bf1226b2098f1a22742cc", + "language": "JavaScript", + "lines": 266, + "truncated": false, + "block": 1, + "row": 1322 + }, + { + "path": "ServerClient_FKModel/node_modules/iconv-lite/encodings/dbcs-codec.js", + "sha256": "d39bc17f93fc56af631b00e36542488923378cce5ad9e7db48252ce7a1e7b1ed", + "language": "JavaScript", + "lines": 555, + "truncated": false, + "block": 1, + "row": 1491 + }, + { + "path": "ServerClient_FKModel/node_modules/iconv-lite/encodings/dbcs-data.js", + "sha256": "e213f77e926605c30649ea48bcea851d1ec063bb17fa4c2ab6d3b64853b481ac", + "language": "JavaScript", + "lines": 176, + "truncated": false, + "block": 1, + "row": 1396 + }, + { + "path": "ServerClient_FKModel/node_modules/iconv-lite/encodings/index.js", + "sha256": "69607a9ee51b63333d0e7ee20a38b52e1e96652a4bbc09c701d70835fbbfe10a", + "language": "JavaScript", + "lines": 22, + "truncated": false, + "block": 1, + "row": 741 + }, + { + "path": "ServerClient_FKModel/node_modules/iconv-lite/encodings/internal.js", + "sha256": "39d9dd0568708a23c5999fcd6c417ec64f35ecbecd37205f91c7c6b59d14d773", + "language": "JavaScript", + "lines": 188, + "truncated": false, + "block": 1, + "row": 1338 + }, + { + "path": "ServerClient_FKModel/node_modules/iconv-lite/encodings/sbcs-codec.js", + "sha256": "fb511c4c70a6cb0e2a06d03e67ca88dca9f4da6266b909c7338e453d2ecc9fdb", + "language": "JavaScript", + "lines": 72, + "truncated": false, + "block": 1, + "row": 1087 + }, + { + "path": "ServerClient_FKModel/node_modules/iconv-lite/encodings/sbcs-data-generated.js", + "sha256": "2cf44b3f70c61c9cdd59fda7ec085bc3180809638f208c7239688ccb90a48866", + "language": "JavaScript", + "lines": 451, + "truncated": false, + "block": 1, + "row": 1520 + }, + { + "path": "ServerClient_FKModel/node_modules/iconv-lite/encodings/sbcs-data.js", + "sha256": "3116c986bff5d0b3a0d9ee1700d97ac466965a7b30d353300d408b41622604c2", + "language": "JavaScript", + "lines": 174, + "truncated": false, + "block": 1, + "row": 1284 + }, + { + "path": "ServerClient_FKModel/node_modules/iconv-lite/encodings/utf16.js", + "sha256": "baf708be438edf0fef70a3e34619c6be94cd53d963acb9b2542419d5fc3bb8c8", + "language": "JavaScript", + "lines": 177, + "truncated": false, + "block": 1, + "row": 1295 + }, + { + "path": "ServerClient_FKModel/node_modules/iconv-lite/encodings/utf7.js", + "sha256": "c814ad268d19265ccafc9f7bba2e8dfcdd2afdea62698bb24b7284b3f2ea18a0", + "language": "JavaScript", + "lines": 290, + "truncated": false, + "block": 1, + "row": 1418 + }, + { + "path": "ServerClient_FKModel/node_modules/iconv-lite/lib/bom-handling.js", + "sha256": "c230d25d8e7fbb50960c634b636b71327c409e9a77e67fe9446b566bdcea362d", + "language": "JavaScript", + "lines": 52, + "truncated": false, + "block": 1, + "row": 900 + }, + { + "path": "ServerClient_FKModel/node_modules/iconv-lite/lib/extend-node.js", + "sha256": "7b86aebd7175d940c50f60eac1981490962855d9723bf971981ddd703ba6af43", + "language": "JavaScript", + "lines": 217, + "truncated": false, + "block": 1, + "row": 1405 + }, + { + "path": "ServerClient_FKModel/node_modules/iconv-lite/lib/index.d.ts", + "sha256": "73aaee6a7a9cf41fb2c67158f4bc218f9da27545ea55648b2c10ca2a9600ae15", + "language": "TypeScript", + "lines": 24, + "truncated": false, + "block": 1, + "row": 12065 + }, + { + "path": "ServerClient_FKModel/node_modules/iconv-lite/lib/index.js", + "sha256": "77d20e2fd5bcd9e324fb6cfdb909cd06fdaf6a91769adffcf4d7c4c066cce4c3", + "language": "JavaScript", + "lines": 153, + "truncated": false, + "block": 1, + "row": 1301 + }, + { + "path": "ServerClient_FKModel/node_modules/iconv-lite/lib/streams.js", + "sha256": "25a423eaf41f8dc6bc40cb28189a24e2d63b990ed72c824940bed55d0264ea6d", + "language": "JavaScript", + "lines": 121, + "truncated": false, + "block": 1, + "row": 1201 + }, + { + "path": "ServerClient_FKModel/node_modules/ieee754/index.d.ts", + "sha256": "1eb4db5f83679b3b6f8683611c93938948aa2d5d5e3988755f9e3a289388b75e", + "language": "TypeScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 12021 + }, + { + "path": "ServerClient_FKModel/node_modules/ieee754/index.js", + "sha256": "fe3e2b20c1ebb57c3b390c8f685ad1e04e6f493517fa7e432f4351bb77a1a4d0", + "language": "JavaScript", + "lines": 85, + "truncated": false, + "block": 1, + "row": 1082 + }, + { + "path": "ServerClient_FKModel/node_modules/inherits/inherits.js", + "sha256": "7af9a5f76c00f72bed44b83824a8acd67febcfd3d34fd293c20c35aa7e6657f6", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 1, + "row": 575 + }, + { + "path": "ServerClient_FKModel/node_modules/inherits/inherits_browser.js", + "sha256": "34a98a1fcd39e12adbc98cc2d6dc3d99bb5a5a83ce8e57050826e9e539b4ecb0", + "language": "JavaScript", + "lines": 23, + "truncated": false, + "block": 1, + "row": 732 + }, + { + "path": "ServerClient_FKModel/node_modules/ini/ini.js", + "sha256": "54ab2a07998e9efc1f79667ee52650479f22e6d6f2bd3bb9c629b1426f5b1906", + "language": "JavaScript", + "lines": 206, + "truncated": false, + "block": 1, + "row": 1293 + }, + { + "path": "ServerClient_FKModel/node_modules/ipaddr.js/ipaddr.min.js", + "sha256": "ab95215c182a1bea49617080dc12e52e3e80521894c37ce0478b69326c151440", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 1427 + }, + { + "path": "ServerClient_FKModel/node_modules/ipaddr.js/lib/ipaddr.js", + "sha256": "d82a21a6872925dfe73e9aa10e9eb47baba398987560e36db107f44d92f069b0", + "language": "JavaScript", + "lines": 673, + "truncated": false, + "block": 1, + "row": 1482 + }, + { + "path": "ServerClient_FKModel/node_modules/ipaddr.js/lib/ipaddr.js.d.ts", + "sha256": "662a75272462317059315f3028452dc8044f752ad0b6b61c084a7ae3eeb0f775", + "language": "TypeScript", + "lines": 68, + "truncated": false, + "block": 1, + "row": 12114 + }, + { + "path": "ServerClient_FKModel/node_modules/is-fullwidth-code-point/index.js", + "sha256": "6701d64b4ad395f30b07f8685c04c6d61ca9c98094d75d0b2e06687e2386910f", + "language": "JavaScript", + "lines": 46, + "truncated": false, + "block": 1, + "row": 971 + }, + { + "path": "ServerClient_FKModel/node_modules/isarray/index.js", + "sha256": "9b8c691372802da788c9c5f4e1ca2f1ed0b88ab8722176c2aea15e38ec86d249", + "language": "JavaScript", + "lines": 5, + "truncated": false, + "block": 1, + "row": 556 + }, + { + "path": "ServerClient_FKModel/node_modules/isarray/test.js", + "sha256": "46997dc4554dd5a554b4883a9c13180c628bb36baadf8f89d2db5861f5239f44", + "language": "JavaScript", + "lines": 20, + "truncated": false, + "block": 1, + "row": 618 + }, + { + "path": "ServerClient_FKModel/node_modules/media-typer/index.js", + "sha256": "27af6de782c53c57c4a8f111a81cd26b8d68c896c2dcd83e27da4c73234ce16b", + "language": "JavaScript", + "lines": 270, + "truncated": false, + "block": 1, + "row": 1345 + }, + { + "path": "ServerClient_FKModel/node_modules/merge-descriptors/index.js", + "sha256": "88564234b9eeb2f0fe2cc5d03f617a97eb4802f126bdd21aa223c3c87c02531c", + "language": "JavaScript", + "lines": 60, + "truncated": false, + "block": 1, + "row": 926 + }, + { + "path": "ServerClient_FKModel/node_modules/methods/index.js", + "sha256": "670576bfe96eb9e4fecd1e8c19f491a68b9bfd7da0e7564cd0a3c2ebd3839180", + "language": "JavaScript", + "lines": 69, + "truncated": false, + "block": 1, + "row": 882 + }, + { + "path": "ServerClient_FKModel/node_modules/mime-db/index.js", + "sha256": "a2532ace32711ae90deb4ae4654c5bc4e56f0a1e21bdd15ba26334bf723dfb09", + "language": "JavaScript", + "lines": 11, + "truncated": false, + "block": 1, + "row": 559 + }, + { + "path": "ServerClient_FKModel/node_modules/mime-types/index.js", + "sha256": "8cfccaac306beb650d60c7f069ae0f4b39d648f1e3914696b18c133ab33e6419", + "language": "JavaScript", + "lines": 188, + "truncated": false, + "block": 1, + "row": 1218 + }, + { + "path": "ServerClient_FKModel/node_modules/mime/cli.js", + "sha256": "f8691b2f01b77334e33bb6898d69c80dc05b18e4be66760c476331a388f9cd27", + "language": "JavaScript", + "lines": 8, + "truncated": false, + "block": 1, + "row": 564 + }, + { + "path": "ServerClient_FKModel/node_modules/mime/mime.js", + "sha256": "a121a0b9e780e9ae349a26227a0d25c33ebac2d52a85aae5affa84ba0f53f16c", + "language": "JavaScript", + "lines": 108, + "truncated": false, + "block": 1, + "row": 1153 + }, + { + "path": "ServerClient_FKModel/node_modules/mime/src/build.js", + "sha256": "facaa3974bfa27c832a629735077528b59cbc088fcfd2c22bbacba152c76ef2a", + "language": "JavaScript", + "lines": 53, + "truncated": false, + "block": 1, + "row": 952 + }, + { + "path": "ServerClient_FKModel/node_modules/mime/src/test.js", + "sha256": "516efe52b18b29b36b9ac4ed1d679a497e0846b269a9cf101fb405fbcc8b402b", + "language": "JavaScript", + "lines": 60, + "truncated": false, + "block": 1, + "row": 1103 + }, + { + "path": "ServerClient_FKModel/node_modules/mimic-response/index.d.ts", + "sha256": "7054578d88c2cf4daa4f57097bb304927aa632d638801acc54ca3ed672ce1fdf", + "language": "TypeScript", + "lines": 17, + "truncated": false, + "block": 1, + "row": 12039 + }, + { + "path": "ServerClient_FKModel/node_modules/mimic-response/index.js", + "sha256": "954e75eb633f92df1143ef3a9f199df54c8f42cecd65c00a397aa890099df60b", + "language": "JavaScript", + "lines": 38, + "truncated": false, + "block": 1, + "row": 804 + }, + { + "path": "ServerClient_FKModel/node_modules/minimist/example/parse.js", + "sha256": "30d70e15175f8b39f7a63d3ebffaced210eeb41ca3085cd229542f43c58ae946", + "language": "JavaScript", + "lines": 2, + "truncated": false, + "block": 1, + "row": 534 + }, + { + "path": "ServerClient_FKModel/node_modules/minimist/index.js", + "sha256": "0feebc85297a35829a4a3a6c5346ddcca582052e5ebf0d33bd024abe8cd5245b", + "language": "JavaScript", + "lines": 245, + "truncated": false, + "block": 1, + "row": 1379 + }, + { + "path": "ServerClient_FKModel/node_modules/minimist/test/all_bool.js", + "sha256": "8646e134f6c0c711a2b79697134e750df6a93008da7657e9a7674e1c3e76675e", + "language": "JavaScript", + "lines": 32, + "truncated": false, + "block": 1, + "row": 753 + }, + { + "path": "ServerClient_FKModel/node_modules/minimist/test/bool.js", + "sha256": "5733f654e511732616b481ab712f1dd06b1143fe3dfdf5660e6a6717420e3221", + "language": "JavaScript", + "lines": 178, + "truncated": false, + "block": 1, + "row": 1251 + }, + { + "path": "ServerClient_FKModel/node_modules/minimist/test/dash.js", + "sha256": "3fd5f504a5b18db2fc71b8bd1ef6f8ef218ed40064ec83c5ed650c475ffbeb84", + "language": "JavaScript", + "lines": 31, + "truncated": false, + "block": 1, + "row": 857 + }, + { + "path": "ServerClient_FKModel/node_modules/minimist/test/default_bool.js", + "sha256": "3c1910e75d38e1656fbb1d592d21d863bffdb569878833a9081317b22a73dd50", + "language": "JavaScript", + "lines": 35, + "truncated": false, + "block": 1, + "row": 765 + }, + { + "path": "ServerClient_FKModel/node_modules/minimist/test/dotted.js", + "sha256": "97ebd99c38b877b99e5d03d55e1f035d729918841ec6340096759ef33a2cd9ce", + "language": "JavaScript", + "lines": 22, + "truncated": false, + "block": 1, + "row": 710 + }, + { + "path": "ServerClient_FKModel/node_modules/minimist/test/kv_short.js", + "sha256": "4032b7f71ed9028e415ec1d38a14f6798453876e2f1e31a031724de335a7fcfa", + "language": "JavaScript", + "lines": 16, + "truncated": false, + "block": 1, + "row": 647 + }, + { + "path": "ServerClient_FKModel/node_modules/minimist/test/long.js", + "sha256": "c2ec0fc2eef2dfa17b81c3a07f853a5493b88805f1c2d6743bfbac39a4dd66ac", + "language": "JavaScript", + "lines": 31, + "truncated": false, + "block": 1, + "row": 767 + }, + { + "path": "ServerClient_FKModel/node_modules/minimist/test/num.js", + "sha256": "53192020ca4b4b32df3e8ad3e351dba4b77993b2d1580525e254ce2e544a25b5", + "language": "JavaScript", + "lines": 36, + "truncated": false, + "block": 1, + "row": 826 + }, + { + "path": "ServerClient_FKModel/node_modules/minimist/test/parse.js", + "sha256": "3e54acabcc5365e3489039a478d7d64cf1e245dfc7b3f0a1229b67af7499cbb2", + "language": "JavaScript", + "lines": 197, + "truncated": false, + "block": 1, + "row": 1279 + }, + { + "path": "ServerClient_FKModel/node_modules/minimist/test/parse_modified.js", + "sha256": "0c24eb30ec9493bba5707894519c8eefac8d48406913d65dd7034dc69925c41a", + "language": "JavaScript", + "lines": 9, + "truncated": false, + "block": 1, + "row": 585 + }, + { + "path": "ServerClient_FKModel/node_modules/minimist/test/proto.js", + "sha256": "df8a4109190c18536003eab1192365fa88d50f184970c687193e003b73937aa0", + "language": "JavaScript", + "lines": 44, + "truncated": false, + "block": 1, + "row": 928 + }, + { + "path": "ServerClient_FKModel/node_modules/minimist/test/short.js", + "sha256": "b59d67ec44ca74fcaa8ade736ec9ae5f62848a5c208cedf81da51eb818a30b21", + "language": "JavaScript", + "lines": 67, + "truncated": false, + "block": 1, + "row": 992 + }, + { + "path": "ServerClient_FKModel/node_modules/minimist/test/stop_early.js", + "sha256": "7a1095012811a80eaaa8d6e789abdc5738d52cd5680952d7d7085288168f1c0c", + "language": "JavaScript", + "lines": 15, + "truncated": false, + "block": 1, + "row": 624 + }, + { + "path": "ServerClient_FKModel/node_modules/minimist/test/unknown.js", + "sha256": "04b227c0c9545091e8eafa5e018dc64c82612163ab4e2c36e233137cb678f944", + "language": "JavaScript", + "lines": 102, + "truncated": false, + "block": 1, + "row": 1128 + }, + { + "path": "ServerClient_FKModel/node_modules/minimist/test/whitespace.js", + "sha256": "c3e3e14aa9030c203ad41030596ed6a1958bc85515608668bc80cfb796c1498c", + "language": "JavaScript", + "lines": 8, + "truncated": false, + "block": 1, + "row": 574 + }, + { + "path": "ServerClient_FKModel/node_modules/mkdirp-classic/index.js", + "sha256": "6e4f5d6d26baf194cf4bbb4d82110046ed6215205b412c57a7b5097dc1623eac", + "language": "JavaScript", + "lines": 98, + "truncated": false, + "block": 1, + "row": 1138 + }, + { + "path": "ServerClient_FKModel/node_modules/ms/index.js", + "sha256": "4bd92209cb9dacf3e3773e725acb7aaec43ea9e78540324e4d0f73e5ce9adef7", + "language": "JavaScript", + "lines": 152, + "truncated": false, + "block": 1, + "row": 1156 + }, + { + "path": "ServerClient_FKModel/node_modules/nan/include_dirs.js", + "sha256": "c32b11511aba771a4c6765de2c73be416f205316ca9f37283170627e778e8d65", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 529 + }, + { + "path": "ServerClient_FKModel/node_modules/nan/nan.h", + "sha256": "13ac73280e04365a24efce9187d908ab9790595292635fe722a72bdeb8142845", + "language": "C/C++", + "lines": 2898, + "truncated": false, + "block": 1, + "row": 438 + }, + { + "path": "ServerClient_FKModel/node_modules/nan/nan_callbacks.h", + "sha256": "56f32971390591edd47beaeca181940a40f15bf92a61d4ce6b0d7c6c5937993a", + "language": "C/C++", + "lines": 88, + "truncated": false, + "block": 1, + "row": 379 + }, + { + "path": "ServerClient_FKModel/node_modules/nan/nan_callbacks_12_inl.h", + "sha256": "8c1a2088333301f5ea3cf6f8c8d4d33ff3efc506163d85d6c175517f7618da1f", + "language": "C/C++", + "lines": 514, + "truncated": false, + "block": 1, + "row": 433 + }, + { + "path": "ServerClient_FKModel/node_modules/nan/nan_callbacks_pre_12_inl.h", + "sha256": "38d1d686ba458e3af2da8874b31d69672648830f173fa0b6367a83f54442c90f", + "language": "C/C++", + "lines": 520, + "truncated": false, + "block": 1, + "row": 431 + }, + { + "path": "ServerClient_FKModel/node_modules/nan/nan_converters.h", + "sha256": "6e92e34bb6915434f8093d80db908929984222dfd6b5ce70095fa9400a196154", + "language": "C/C++", + "lines": 72, + "truncated": false, + "block": 1, + "row": 353 + }, + { + "path": "ServerClient_FKModel/node_modules/nan/nan_converters_43_inl.h", + "sha256": "7045e630e82c24629d8dfeaa375b4fb471dd24b6df72fb2b89d3803c41139e9d", + "language": "C/C++", + "lines": 68, + "truncated": false, + "block": 1, + "row": 370 + }, + { + "path": "ServerClient_FKModel/node_modules/nan/nan_converters_pre_43_inl.h", + "sha256": "5c2eaa295ec1caf3f3ef319b785b436b3e0bd2c4440ff576b5aba82d12262394", + "language": "C/C++", + "lines": 42, + "truncated": false, + "block": 1, + "row": 329 + }, + { + "path": "ServerClient_FKModel/node_modules/nan/nan_define_own_property_helper.h", + "sha256": "cae6c4f3bdba55e362011702976075a8f23c2b555fdbd22ea0a90d3ac5572a20", + "language": "C/C++", + "lines": 29, + "truncated": false, + "block": 1, + "row": 319 + }, + { + "path": "ServerClient_FKModel/node_modules/nan/nan_implementation_12_inl.h", + "sha256": "7ddff7c5e82c601a6cab39785be4fc84d2f3513e0c2e731a90f5c9f3eb9b2546", + "language": "C/C++", + "lines": 430, + "truncated": false, + "block": 1, + "row": 429 + }, + { + "path": "ServerClient_FKModel/node_modules/nan/nan_implementation_pre_12_inl.h", + "sha256": "09bcabcf7d99588c375545a7e6862374e717f5bdd7f6387b2c76377863b7817b", + "language": "C/C++", + "lines": 263, + "truncated": false, + "block": 1, + "row": 418 + }, + { + "path": "ServerClient_FKModel/node_modules/nan/nan_json.h", + "sha256": "db8990e9fd1c1fef3a354f9e8ecb0830a41be9ac5f6754af520252f513c046b9", + "language": "C/C++", + "lines": 166, + "truncated": false, + "block": 1, + "row": 411 + }, + { + "path": "ServerClient_FKModel/node_modules/nan/nan_maybe_43_inl.h", + "sha256": "e79a940c0641672fcc463d5eb73e1fa017e5b7b2c13ec1d492ed98efb0830001", + "language": "C/C++", + "lines": 356, + "truncated": false, + "block": 1, + "row": 428 + }, + { + "path": "ServerClient_FKModel/node_modules/nan/nan_maybe_pre_43_inl.h", + "sha256": "a128293f1802bbe309c11e2764f2a5d1fad9c7dd90eea9dbf7d046da481f8195", + "language": "C/C++", + "lines": 268, + "truncated": false, + "block": 1, + "row": 415 + }, + { + "path": "ServerClient_FKModel/node_modules/nan/nan_new.h", + "sha256": "11fbc38eb49cb6f3c142022c5b47bccc6a18047ad7d509af011feee48f02d7fd", + "language": "C/C++", + "lines": 340, + "truncated": false, + "block": 1, + "row": 423 + }, + { + "path": "ServerClient_FKModel/node_modules/nan/nan_object_wrap.h", + "sha256": "57cf6cd941b4a807bcbe69d3555bcefd0dca0ec77f459ad77dac07b491f063d5", + "language": "C/C++", + "lines": 156, + "truncated": false, + "block": 1, + "row": 401 + }, + { + "path": "ServerClient_FKModel/node_modules/nan/nan_persistent_12_inl.h", + "sha256": "f720e2e961664e897bf8e82d9181d810f0cb681a7e7bd5b8200c55649d3f02b2", + "language": "C/C++", + "lines": 132, + "truncated": false, + "block": 1, + "row": 399 + }, + { + "path": "ServerClient_FKModel/node_modules/nan/nan_persistent_pre_12_inl.h", + "sha256": "f502353164d1538f8059c2cf999e55fa462e38cdb15ae97f94af0aaed51e58d2", + "language": "C/C++", + "lines": 242, + "truncated": false, + "block": 1, + "row": 412 + }, + { + "path": "ServerClient_FKModel/node_modules/nan/nan_private.h", + "sha256": "c9a7b80803ee292a0e89ea40a5afffd21f2c5af387ddec405fd215e8dd3d60f7", + "language": "C/C++", + "lines": 73, + "truncated": false, + "block": 1, + "row": 363 + }, + { + "path": "ServerClient_FKModel/node_modules/nan/nan_string_bytes.h", + "sha256": "e06ce2cde16826c454691f8f310c3562ddc0d560f132db2fe61b3cb6dd29f101", + "language": "C/C++", + "lines": 305, + "truncated": false, + "block": 1, + "row": 419 + }, + { + "path": "ServerClient_FKModel/node_modules/nan/nan_typedarray_contents.h", + "sha256": "7e3c67b148130da1c4e935aa910b91c18d453f42e2d73b1c57c9839c9a5c5720", + "language": "C/C++", + "lines": 96, + "truncated": false, + "block": 1, + "row": 380 + }, + { + "path": "ServerClient_FKModel/node_modules/nan/nan_weak.h", + "sha256": "2303a6f5ba881d000511cf698adffd8bd8c448ba8fece209b9d503825cdd95f0", + "language": "C/C++", + "lines": 437, + "truncated": false, + "block": 1, + "row": 430 + }, + { + "path": "ServerClient_FKModel/node_modules/nan/tools/1to2.js", + "sha256": "04901f617fc36da5bc8a2f4cf1bdcb39d5e38e3a7d084a4a61d4bdb85aac0138", + "language": "JavaScript", + "lines": 412, + "truncated": false, + "block": 1, + "row": 1459 + }, + { + "path": "ServerClient_FKModel/node_modules/napi-build-utils/index.js", + "sha256": "bcc8b6546ab1c893638d0886d312f421c1a5222a1b0c62a31432d3cbf7072aae", + "language": "JavaScript", + "lines": 213, + "truncated": false, + "block": 1, + "row": 1369 + }, + { + "path": "ServerClient_FKModel/node_modules/negotiator/index.js", + "sha256": "6019e096fc7bc12e4811f0f363e57b7cd60f08b8ea995e15aa33614d99332377", + "language": "JavaScript", + "lines": 124, + "truncated": false, + "block": 1, + "row": 1199 + }, + { + "path": "ServerClient_FKModel/node_modules/negotiator/lib/charset.js", + "sha256": "e6522a2df58f21a6cdf8d146f7e85b9a49bcaf68b813dec15068a8e84fc582c3", + "language": "JavaScript", + "lines": 169, + "truncated": false, + "block": 1, + "row": 1176 + }, + { + "path": "ServerClient_FKModel/node_modules/negotiator/lib/encoding.js", + "sha256": "35421dc78d3c1b608922427bbd6e524518168621ff1a44919fc591ca297e813c", + "language": "JavaScript", + "lines": 184, + "truncated": false, + "block": 1, + "row": 1210 + }, + { + "path": "ServerClient_FKModel/node_modules/negotiator/lib/language.js", + "sha256": "403a63ab9e6304a1c00443d7891a22eb1ef8357729d36a224d8f9ea393f5e93a", + "language": "JavaScript", + "lines": 179, + "truncated": false, + "block": 1, + "row": 1202 + }, + { + "path": "ServerClient_FKModel/node_modules/negotiator/lib/mediaType.js", + "sha256": "0dab239c924fa4d5f823548e25dc9f10315bf490b821827b640318b7aa200577", + "language": "JavaScript", + "lines": 294, + "truncated": false, + "block": 1, + "row": 1305 + }, + { + "path": "ServerClient_FKModel/node_modules/node-abi/index.js", + "sha256": "3833f15955ca5a235714eda1de0a35d4d49ae417f265a5923cc3a78842912ea0", + "language": "JavaScript", + "lines": 170, + "truncated": false, + "block": 1, + "row": 1337 + }, + { + "path": "ServerClient_FKModel/node_modules/node-abi/scripts/update-abi-registry.js", + "sha256": "c149c1cb2283a6646b3c23539ccaaa7bc45026196bf6eaec5ce9a37e9d604a60", + "language": "JavaScript", + "lines": 113, + "truncated": false, + "block": 1, + "row": 1180 + }, + { + "path": "ServerClient_FKModel/node_modules/node-abi/test/index.js", + "sha256": "b14928e12e0d989141ffedad956b87787c05c8c37accd4f84fa78ceaf1f66ed4", + "language": "JavaScript", + "lines": 174, + "truncated": false, + "block": 1, + "row": 1357 + }, + { + "path": "ServerClient_FKModel/node_modules/noop-logger/lib/index.js", + "sha256": "79e9407fdf956a709aeb3cdb06e3a3253f899e01f0e4a266298a2ab735098c2e", + "language": "JavaScript", + "lines": 25, + "truncated": false, + "block": 1, + "row": 592 + }, + { + "path": "ServerClient_FKModel/node_modules/noop-logger/test/index.js", + "sha256": "4086022d3d089c260b6d8c2daafa2a389a2b90d4e3d82a79a943e2c26ddbc62b", + "language": "JavaScript", + "lines": 18, + "truncated": false, + "block": 1, + "row": 730 + }, + { + "path": "ServerClient_FKModel/node_modules/npmlog/log.js", + "sha256": "569279cae3fbdadc4b5346b515a4699f2ef64533ad05f52aefdfbc8ef3d804f4", + "language": "JavaScript", + "lines": 309, + "truncated": false, + "block": 1, + "row": 1403 + }, + { + "path": "ServerClient_FKModel/node_modules/number-is-nan/index.js", + "sha256": "ae6aa905876623b7774309fa69f6fb23924760fe2fc2db63a514a468d4b8d8f8", + "language": "JavaScript", + "lines": 4, + "truncated": false, + "block": 1, + "row": 541 + }, + { + "path": "ServerClient_FKModel/node_modules/object-assign/index.js", + "sha256": "e02cb9714ef6e561e971fe400644330212f07ca86120587199470d8b759a4b7c", + "language": "JavaScript", + "lines": 90, + "truncated": false, + "block": 1, + "row": 1071 + }, + { + "path": "ServerClient_FKModel/node_modules/on-finished/index.js", + "sha256": "b0314432e091ecc1f7095ac5f49c6705d5fb559b0c3fd22e2d750ef59e76fa24", + "language": "JavaScript", + "lines": 196, + "truncated": false, + "block": 1, + "row": 1219 + }, + { + "path": "ServerClient_FKModel/node_modules/once/once.js", + "sha256": "3db73e347ecbdbafdf8d0db85145c877e133f5372e767360ef90c09f70ac5103", + "language": "JavaScript", + "lines": 42, + "truncated": false, + "block": 1, + "row": 839 + }, + { + "path": "ServerClient_FKModel/node_modules/parseurl/index.js", + "sha256": "811223d4a19492ccc642384dc84f0af4ad935557dfe8f63750d7ffd673e40f17", + "language": "JavaScript", + "lines": 158, + "truncated": false, + "block": 1, + "row": 1162 + }, + { + "path": "ServerClient_FKModel/node_modules/path-to-regexp/index.js", + "sha256": "c6fca7c07d17e676c51896b785576a118ccffa934959ddcee7ed106d3f8d4d01", + "language": "JavaScript", + "lines": 129, + "truncated": false, + "block": 1, + "row": 1198 + }, + { + "path": "ServerClient_FKModel/node_modules/prebuild-install/asset.js", + "sha256": "eaf588f4fbc5113f0c6fdf0ebb1c4639aac8006a61edfb786ef9623c0910dfab", + "language": "JavaScript", + "lines": 48, + "truncated": false, + "block": 1, + "row": 920 + }, + { + "path": "ServerClient_FKModel/node_modules/prebuild-install/bin.js", + "sha256": "167d1772fe5408a58603790e34a76faa5b774605bedc989e169eab1f7502208f", + "language": "JavaScript", + "lines": 78, + "truncated": false, + "block": 1, + "row": 1096 + }, + { + "path": "ServerClient_FKModel/node_modules/prebuild-install/download.js", + "sha256": "9ee749edd691cdb33f5867376ac29bd018afd09fa9b125b17aa2622ddd37aa62", + "language": "JavaScript", + "lines": 146, + "truncated": false, + "block": 1, + "row": 1246 + }, + { + "path": "ServerClient_FKModel/node_modules/prebuild-install/error.js", + "sha256": "0df3fa571a7fb2563113d8a7ea83c79e769830abbe7b5d5d9cd430c3ea893f68", + "language": "JavaScript", + "lines": 14, + "truncated": false, + "block": 1, + "row": 637 + }, + { + "path": "ServerClient_FKModel/node_modules/prebuild-install/index.js", + "sha256": "51c1dae166a7da3717cc50ba36118c12f5351ff07a7d23d6dd53828bd857f5b6", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 520 + }, + { + "path": "ServerClient_FKModel/node_modules/prebuild-install/log.js", + "sha256": "e95a3a03d2aa0a597e4e51b71a183d4492612febd901aa72b8378e7c35c88690", + "language": "JavaScript", + "lines": 25, + "truncated": false, + "block": 1, + "row": 734 + }, + { + "path": "ServerClient_FKModel/node_modules/prebuild-install/proxy.js", + "sha256": "1e65ceff565db5417e2c7bedbbef68e3810e8825e582a2192ce79ee11ad7baf1", + "language": "JavaScript", + "lines": 38, + "truncated": false, + "block": 1, + "row": 916 + }, + { + "path": "ServerClient_FKModel/node_modules/prebuild-install/rc.js", + "sha256": "d5b3be08fdf0e37193d2eab3049ba8088da5e0913a1b0091ef80a38af8a6aa55", + "language": "JavaScript", + "lines": 61, + "truncated": false, + "block": 1, + "row": 1051 + }, + { + "path": "ServerClient_FKModel/node_modules/prebuild-install/util.js", + "sha256": "513ddf1f408b0ab7f0ccbb78491fb3a36c6e24a3fd00bb4ae0486e2e4cd645d7", + "language": "JavaScript", + "lines": 127, + "truncated": false, + "block": 1, + "row": 1230 + }, + { + "path": "ServerClient_FKModel/node_modules/process-nextick-args/index.js", + "sha256": "90ba524851f721e8aced79870d6d6a733cd3939b293a83e2d04417812a8ba330", + "language": "JavaScript", + "lines": 45, + "truncated": false, + "block": 1, + "row": 891 + }, + { + "path": "ServerClient_FKModel/node_modules/proxy-addr/index.js", + "sha256": "c586f959f09961edc6e261d9404455fce40998a221f71d44833bb4b12796c33c", + "language": "JavaScript", + "lines": 327, + "truncated": false, + "block": 1, + "row": 1328 + }, + { + "path": "ServerClient_FKModel/node_modules/pump/index.js", + "sha256": "60ae01725219c69e086e0cfe6a6da1f94a9bafcfbf528460b6e04b7b6d983165", + "language": "JavaScript", + "lines": 82, + "truncated": false, + "block": 1, + "row": 1089 + }, + { + "path": "ServerClient_FKModel/node_modules/pump/test-browser.js", + "sha256": "bfdd31d421d9975519122715df56e81662abf283e386bda1d7141ef277f70191", + "language": "JavaScript", + "lines": 66, + "truncated": false, + "block": 1, + "row": 908 + }, + { + "path": "ServerClient_FKModel/node_modules/pump/test-node.js", + "sha256": "04b7b585e056fccea011f300815d9f19afb190b7c88f5bc575aeac8b5dd00ded", + "language": "JavaScript", + "lines": 53, + "truncated": false, + "block": 1, + "row": 863 + }, + { + "path": "ServerClient_FKModel/node_modules/qs/dist/qs.js", + "sha256": "085ea530c850a31be36cfafdb09136f97ceabe493b6ab9b96f2de3912ab4fe25", + "language": "JavaScript", + "lines": 782, + "truncated": false, + "block": 1, + "row": 1503 + }, + { + "path": "ServerClient_FKModel/node_modules/qs/lib/formats.js", + "sha256": "fa46703aec014a01b57df0e0d3d42ff4d773cccc58e5fabd292ac61b25f731f6", + "language": "JavaScript", + "lines": 18, + "truncated": false, + "block": 1, + "row": 655 + }, + { + "path": "ServerClient_FKModel/node_modules/qs/lib/index.js", + "sha256": "8f4e02eef6ccc43f2b7448c18ae209281c8e9af9807cad491df67450e3817a95", + "language": "JavaScript", + "lines": 11, + "truncated": false, + "block": 1, + "row": 578 + }, + { + "path": "ServerClient_FKModel/node_modules/qs/lib/parse.js", + "sha256": "cf791be1811bd18d699567fe7ca6aa0961ae237644a41883765eab2601ef58f0", + "language": "JavaScript", + "lines": 242, + "truncated": false, + "block": 1, + "row": 1401 + }, + { + "path": "ServerClient_FKModel/node_modules/qs/lib/stringify.js", + "sha256": "7cbb020ea4d2e31dcbfb07d2ca22fd80397579eebcffe02148cff7745fd93de3", + "language": "JavaScript", + "lines": 269, + "truncated": false, + "block": 1, + "row": 1394 + }, + { + "path": "ServerClient_FKModel/node_modules/qs/lib/utils.js", + "sha256": "d6d87593414ca65949b037e91e9851314f6d1b043b9fc679787a3d6dd6db4375", + "language": "JavaScript", + "lines": 230, + "truncated": false, + "block": 1, + "row": 1341 + }, + { + "path": "ServerClient_FKModel/node_modules/qs/test/index.js", + "sha256": "d810ca4739cc60876ce8fe5ca755b478cf68c0400cf7fe6518169230a6a94f5e", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 1, + "row": 540 + }, + { + "path": "ServerClient_FKModel/node_modules/qs/test/parse.js", + "sha256": "6e1d1f2876f1b99309518378b5ab57a3055b619f6882b26b52a227590b759a53", + "language": "JavaScript", + "lines": 676, + "truncated": false, + "block": 1, + "row": 1513 + }, + { + "path": "ServerClient_FKModel/node_modules/qs/test/stringify.js", + "sha256": "ae1602f6456ffd2a89a781727f22355458592c7c9b45170abe4a5b5c386f46ae", + "language": "JavaScript", + "lines": 679, + "truncated": false, + "block": 1, + "row": 1500 + }, + { + "path": "ServerClient_FKModel/node_modules/qs/test/utils.js", + "sha256": "bdab610f30f97bdb20b9cf79d39927186dffaa524abc952d3e6831aa8f6777ed", + "language": "JavaScript", + "lines": 136, + "truncated": false, + "block": 1, + "row": 1299 + }, + { + "path": "ServerClient_FKModel/node_modules/range-parser/index.js", + "sha256": "38786526d000475300728db07455aa21d1e37b0f24e48fbc4cb30136ae30b07b", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1165 + }, + { + "path": "ServerClient_FKModel/node_modules/raw-body/index.d.ts", + "sha256": "3d05b353d9341c0dbff6d21f18490e346c3b661f5fc9d7f36e0e3fe5f940699c", + "language": "TypeScript", + "lines": 87, + "truncated": false, + "block": 1, + "row": 12101 + }, + { + "path": "ServerClient_FKModel/node_modules/raw-body/index.js", + "sha256": "ce1d9e7768f499df276dcc57945ca0c55201aa92f982889e868e25eec8faad50", + "language": "JavaScript", + "lines": 286, + "truncated": false, + "block": 1, + "row": 1335 + }, + { + "path": "ServerClient_FKModel/node_modules/rc/browser.js", + "sha256": "6c04801604d01bcc3c9b6db980749bdbd543205af5fef979e6adfc4a835b66c5", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 1, + "row": 560 + }, + { + "path": "ServerClient_FKModel/node_modules/rc/cli.js", + "sha256": "82383f5748af5f9380dbcde8f0166088614bf024e25bdbe073bb87cd385336ba", + "language": "JavaScript", + "lines": 4, + "truncated": false, + "block": 1, + "row": 550 + }, + { + "path": "ServerClient_FKModel/node_modules/rc/index.js", + "sha256": "7a4c19d1025d2669723dd2a939ced7d556d815eedfff62bf288970365b8b26dc", + "language": "JavaScript", + "lines": 53, + "truncated": false, + "block": 1, + "row": 978 + }, + { + "path": "ServerClient_FKModel/node_modules/rc/lib/utils.js", + "sha256": "3eba35eafd078a2c4843a11000c06443b5d8b2fea3b682aae20daeea5be66cd2", + "language": "JavaScript", + "lines": 104, + "truncated": false, + "block": 1, + "row": 1155 + }, + { + "path": "ServerClient_FKModel/node_modules/rc/test/ini.js", + "sha256": "de40b4f5d4f8d7dfeeaae96d767c512e3cc3a4bfeee8780e608306ac36284a6d", + "language": "JavaScript", + "lines": 16, + "truncated": false, + "block": 1, + "row": 614 + }, + { + "path": "ServerClient_FKModel/node_modules/rc/test/nested-env-vars.js", + "sha256": "5b00a5b450b52b4c5d4432093665c20e62ad39126aed8da24cddc3e6c7871919", + "language": "JavaScript", + "lines": 50, + "truncated": false, + "block": 1, + "row": 961 + }, + { + "path": "ServerClient_FKModel/node_modules/rc/test/test.js", + "sha256": "1e277a1cdda596747a7d3d7d7995b43eb104901ce9f0ecf234dc6e625e2ebe6b", + "language": "JavaScript", + "lines": 59, + "truncated": false, + "block": 1, + "row": 911 + }, + { + "path": "ServerClient_FKModel/node_modules/readable-stream/duplex-browser.js", + "sha256": "b492b180e158a495afa7b394de1440e037c5d60524bb2fce839aeb690e6ff968", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 526 + }, + { + "path": "ServerClient_FKModel/node_modules/readable-stream/duplex.js", + "sha256": "16475035143997e924dc3f41af6fd657cf55c5843f415f00b155c20891da8a5b", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 521 + }, + { + "path": "ServerClient_FKModel/node_modules/readable-stream/lib/_stream_duplex.js", + "sha256": "fd17d6a92dd9ba004c85f8e364b2771af10d012a83766437447dbae63879fa6b", + "language": "JavaScript", + "lines": 131, + "truncated": false, + "block": 1, + "row": 1238 + }, + { + "path": "ServerClient_FKModel/node_modules/readable-stream/lib/_stream_passthrough.js", + "sha256": "bf61450b1ff5f94fea9d46665e931119642034c903e63cc224b4c96472eed4d4", + "language": "JavaScript", + "lines": 47, + "truncated": false, + "block": 1, + "row": 1018 + }, + { + "path": "ServerClient_FKModel/node_modules/readable-stream/lib/_stream_readable.js", + "sha256": "f0e34561f8b2138c0f156d54f552658f4d47400afa4cd5c486923de2e9878c71", + "language": "JavaScript", + "lines": 1019, + "truncated": false, + "block": 1, + "row": 1518 + }, + { + "path": "ServerClient_FKModel/node_modules/readable-stream/lib/_stream_transform.js", + "sha256": "56220d9dd58b976f1739bfc85948b267d79772ba23672ff402d13b6b3fcf4e40", + "language": "JavaScript", + "lines": 214, + "truncated": false, + "block": 1, + "row": 1382 + }, + { + "path": "ServerClient_FKModel/node_modules/readable-stream/lib/_stream_writable.js", + "sha256": "3bea15e60141038162629b409fd21f2675e793da947e3afad0fb66a26d427299", + "language": "JavaScript", + "lines": 687, + "truncated": false, + "block": 1, + "row": 1486 + }, + { + "path": "ServerClient_FKModel/node_modules/readable-stream/lib/internal/streams/BufferList.js", + "sha256": "8b3ad3a63761a51e9668f88198b218379294019c77d3d8344b2e2f8d89a3e0b3", + "language": "JavaScript", + "lines": 79, + "truncated": false, + "block": 1, + "row": 1059 + }, + { + "path": "ServerClient_FKModel/node_modules/readable-stream/lib/internal/streams/destroy.js", + "sha256": "72fa9f60ff48129143de2e1c1f624cef0d7f41ad55c7d60d94d1014635299607", + "language": "JavaScript", + "lines": 74, + "truncated": false, + "block": 1, + "row": 1033 + }, + { + "path": "ServerClient_FKModel/node_modules/readable-stream/lib/internal/streams/stream-browser.js", + "sha256": "72d46a15491627d8fb1489a47d03583cfe5c21902918016ab532b53e615e5a9a", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 524 + }, + { + "path": "ServerClient_FKModel/node_modules/readable-stream/lib/internal/streams/stream.js", + "sha256": "1e7903927df33aadb3659ecce55266c9c851da65ce6c8b723a60a305c1c5422c", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 516 + }, + { + "path": "ServerClient_FKModel/node_modules/readable-stream/passthrough.js", + "sha256": "809dbc03b4c312355ff74eb14b2ccc77267ee71e04f519f437eb4b203407c4b7", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 525 + }, + { + "path": "ServerClient_FKModel/node_modules/readable-stream/readable-browser.js", + "sha256": "ec8e6f4e484d5269bc134752e11770b66b6be3a470217c2a0166e977965f53c6", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 1, + "row": 636 + }, + { + "path": "ServerClient_FKModel/node_modules/readable-stream/readable.js", + "sha256": "a1efa3fa06393aff652f3529ea1b1bc32134d49eb794b23272fb0ba13d214550", + "language": "JavaScript", + "lines": 19, + "truncated": false, + "block": 1, + "row": 763 + }, + { + "path": "ServerClient_FKModel/node_modules/readable-stream/transform.js", + "sha256": "155f794c5c789568b7bc632cd37f28b9064890e887bfab96a4393100218d4230", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 523 + }, + { + "path": "ServerClient_FKModel/node_modules/readable-stream/writable-browser.js", + "sha256": "427bae9a6a026082e46acb500da48b270234ebc2a1ded1315b49eccfa6311c61", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 528 + }, + { + "path": "ServerClient_FKModel/node_modules/readable-stream/writable.js", + "sha256": "74cbbdc5d60e1ee6560d2850515b68c3d6b39d9b2f32346aac1386b031c2a661", + "language": "JavaScript", + "lines": 8, + "truncated": false, + "block": 1, + "row": 581 + }, + { + "path": "ServerClient_FKModel/node_modules/safe-buffer/index.d.ts", + "sha256": "5e379df3d61561c2ed7789b5995b9ba2143bbba21a905e2381e16efe7d1fa424", + "language": "TypeScript", + "lines": 187, + "truncated": false, + "block": 1, + "row": 12158 + }, + { + "path": "ServerClient_FKModel/node_modules/safe-buffer/index.js", + "sha256": "d58af21cb0518864d0c505742d1af71e5b5e1f142f4c0f27353aa0f431a616d4", + "language": "JavaScript", + "lines": 62, + "truncated": false, + "block": 1, + "row": 982 + }, + { + "path": "ServerClient_FKModel/node_modules/safer-buffer/dangerous.js", + "sha256": "1dc2900bcc8ffc375af0d2fc99a03ecad2dcbb85d278fbf26982e87707bea53f", + "language": "JavaScript", + "lines": 58, + "truncated": false, + "block": 1, + "row": 974 + }, + { + "path": "ServerClient_FKModel/node_modules/safer-buffer/safer.js", + "sha256": "37f9716144105051ab302f6a0c30a52ff5de7269b9e1173ac22be798fc11ccad", + "language": "JavaScript", + "lines": 77, + "truncated": false, + "block": 1, + "row": 1073 + }, + { + "path": "ServerClient_FKModel/node_modules/safer-buffer/tests.js", + "sha256": "511906fdf6a233c84a9216065d1701dbfd84f380fbd495ae1cf5a002370b9885", + "language": "JavaScript", + "lines": 406, + "truncated": false, + "block": 1, + "row": 1471 + }, + { + "path": "ServerClient_FKModel/node_modules/semver/semver.js", + "sha256": "161e134793e0789620e9c3257ea47b28049b977f08e817dcfa9e2e30cca8bdf4", + "language": "JavaScript", + "lines": 1483, + "truncated": false, + "block": 1, + "row": 1526 + }, + { + "path": "ServerClient_FKModel/node_modules/send/index.js", + "sha256": "f4145dfc482fba92177bd81092fdf6ebe74c919ea3f2a26713bfeb2a1c065c40", + "language": "JavaScript", + "lines": 1129, + "truncated": false, + "block": 1, + "row": 1498 + }, + { + "path": "ServerClient_FKModel/node_modules/send/node_modules/ms/index.js", + "sha256": "7c9083207b648e648c4d076e7bd7d85af73daae58738199eb8c20a465dfdcd19", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1171 + }, + { + "path": "ServerClient_FKModel/node_modules/serialport/lib/index.js", + "sha256": "dcab9f772274dd761ec1bff8ffb8372850f0586b2695df3ceb6280fff702c4a5", + "language": "JavaScript", + "lines": 15, + "truncated": false, + "block": 1, + "row": 606 + }, + { + "path": "ServerClient_FKModel/node_modules/serialport/lib/parsers.js", + "sha256": "3d061effea577e0ad07e248f43b8c2d074f83e00265175163c2ba3b6ac95e6fa", + "language": "JavaScript", + "lines": 9, + "truncated": false, + "block": 1, + "row": 658 + }, + { + "path": "ServerClient_FKModel/node_modules/serialport/node_modules/debug/src/browser.js", + "sha256": "4e3dc6d0e1db58a0d74206b443f35582d3b717be56a0f6d030c34af6c2ad9f62", + "language": "JavaScript", + "lines": 269, + "truncated": false, + "block": 1, + "row": 1329 + }, + { + "path": "ServerClient_FKModel/node_modules/serialport/node_modules/debug/src/common.js", + "sha256": "ae6855e9f5ef6687aa8f76e69dd1854f1b99985146434daff310150083cfde02", + "language": "JavaScript", + "lines": 261, + "truncated": false, + "block": 1, + "row": 1332 + }, + { + "path": "ServerClient_FKModel/node_modules/serialport/node_modules/debug/src/index.js", + "sha256": "aa127ff1752b7d9c7415c5c7bb6994d9aa722b81bcbcab4bd48316b013d23bf3", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 616 + }, + { + "path": "ServerClient_FKModel/node_modules/serialport/node_modules/debug/src/node.js", + "sha256": "f237adcb52849de7c128f57e0468b52353c529a6c8341810477c0e7144359559", + "language": "JavaScript", + "lines": 263, + "truncated": false, + "block": 1, + "row": 1283 + }, + { + "path": "ServerClient_FKModel/node_modules/serialport/node_modules/ms/index.js", + "sha256": "55986972f5f3c9446f876c576e1cd30fd4f04cd26527efbb5ad834637c740e4c", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1169 + }, + { + "path": "ServerClient_FKModel/node_modules/serialport/test.js", + "sha256": "9302a7612bfe5080d8830dc61ba0b23a768ef35ead8dd64dac02c39b0eb2c255", + "language": "JavaScript", + "lines": 8, + "truncated": false, + "block": 1, + "row": 583 + }, + { + "path": "ServerClient_FKModel/node_modules/serve-static/index.js", + "sha256": "768d6407e86ba974e7b8a0e79625e76a932b1f2503207c87f871fcf98be21b1e", + "language": "JavaScript", + "lines": 210, + "truncated": false, + "block": 1, + "row": 1277 + }, + { + "path": "ServerClient_FKModel/node_modules/set-blocking/index.js", + "sha256": "8b238f1de62bb2a7b35a9e6b0364a64ce0f357cb63251580ff5a25429712e1d1", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 1, + "row": 589 + }, + { + "path": "ServerClient_FKModel/node_modules/setprototypeof/index.d.ts", + "sha256": "594108e052a71fbabf137a1139736186af6e437a255705e99f8c666f4d2af4c4", + "language": "TypeScript", + "lines": 2, + "truncated": false, + "block": 1, + "row": 12009 + }, + { + "path": "ServerClient_FKModel/node_modules/setprototypeof/index.js", + "sha256": "62193f6768a098bc245f88a86a955d50643f68537d181945f6eec5792e4a294b", + "language": "JavaScript", + "lines": 17, + "truncated": false, + "block": 1, + "row": 651 + }, + { + "path": "ServerClient_FKModel/node_modules/setprototypeof/test/index.js", + "sha256": "44bed5fcccb6c8f6cd92ff4bc034005b9d46ba560c572979944772555d4f2585", + "language": "JavaScript", + "lines": 24, + "truncated": false, + "block": 1, + "row": 736 + }, + { + "path": "ServerClient_FKModel/node_modules/signal-exit/index.js", + "sha256": "b9ccc2e42e309e1f35e056d82544685f73556ee2f71e594f900d4846442f6255", + "language": "JavaScript", + "lines": 163, + "truncated": false, + "block": 1, + "row": 1243 + }, + { + "path": "ServerClient_FKModel/node_modules/signal-exit/signals.js", + "sha256": "ae538fdae683d6fa2e14579da06df10fb7a66378cfa50971956fb68c2c86c727", + "language": "JavaScript", + "lines": 53, + "truncated": false, + "block": 1, + "row": 941 + }, + { + "path": "ServerClient_FKModel/node_modules/simple-concat/index.js", + "sha256": "fbd2a589ece8138da87d9a5e3d537afbbc32f08582bec0939cd3c494002259a4", + "language": "JavaScript", + "lines": 15, + "truncated": false, + "block": 1, + "row": 657 + }, + { + "path": "ServerClient_FKModel/node_modules/simple-concat/test/basic.js", + "sha256": "855070c71eef83b431ea9e87f642d147880fa08eeb47eca8c2e647af3f287011", + "language": "JavaScript", + "lines": 41, + "truncated": false, + "block": 1, + "row": 788 + }, + { + "path": "ServerClient_FKModel/node_modules/simple-get/index.js", + "sha256": "b3d1320c6169ffaa2596b08e48529eb526945089a569326cb898cdc50dad654b", + "language": "JavaScript", + "lines": 99, + "truncated": false, + "block": 1, + "row": 1213 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io-adapter/dist/index.d.ts", + "sha256": "426dfc3f738617c403c8019cd9831958928dbd6f4dbeb66f17f24b0145093baf", + "language": "TypeScript", + "lines": 112, + "truncated": false, + "block": 1, + "row": 12116 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io-adapter/dist/index.js", + "sha256": "a5f42b0d62f0a7189a034d783995db7e4f7d71e52f66da3f2a4fc7032e5c5560", + "language": "JavaScript", + "lines": 218, + "truncated": false, + "block": 1, + "row": 1336 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io-parser/dist/binary.d.ts", + "sha256": "f233d56f423b86ffc2039c61ca75a3a6a8aa3a943cf1ff29cc160486185ecb9c", + "language": "TypeScript", + "lines": 20, + "truncated": false, + "block": 1, + "row": 12043 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io-parser/dist/binary.js", + "sha256": "b455bebe40cab935b7d13c85e3ed04b7235c244aaace8284aa42972021de6c34", + "language": "JavaScript", + "lines": 80, + "truncated": false, + "block": 1, + "row": 1146 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io-parser/dist/index.d.ts", + "sha256": "6ce9c4c7d976960a7f14dfe40e26c357bcab9405eb2eea38f79760ed4f323512", + "language": "TypeScript", + "lines": 72, + "truncated": false, + "block": 1, + "row": 12084 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io-parser/dist/index.js", + "sha256": "2971c85683dbe8a8a2e2b8c5eb5b5771f1fc30d69700ac55b167003a55b7c282", + "language": "JavaScript", + "lines": 280, + "truncated": false, + "block": 1, + "row": 1411 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io-parser/dist/is-binary.d.ts", + "sha256": "1da3b6a36b83b8b723f6fbf7bed731a79b60a735c31893ccef57cb5e68283b10", + "language": "TypeScript", + "lines": 7, + "truncated": false, + "block": 1, + "row": 12013 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io-parser/dist/is-binary.js", + "sha256": "5f6c79dc87d7fa32cb4165d02313018c605881e2ff26380d4742a4fd3c0161a2", + "language": "JavaScript", + "lines": 55, + "truncated": false, + "block": 1, + "row": 1017 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io-parser/node_modules/debug/src/browser.js", + "sha256": "4e3dc6d0e1db58a0d74206b443f35582d3b717be56a0f6d030c34af6c2ad9f62", + "language": "JavaScript", + "lines": 269, + "truncated": false, + "block": 1, + "row": 1329 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io-parser/node_modules/debug/src/common.js", + "sha256": "ae6855e9f5ef6687aa8f76e69dd1854f1b99985146434daff310150083cfde02", + "language": "JavaScript", + "lines": 261, + "truncated": false, + "block": 1, + "row": 1332 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io-parser/node_modules/debug/src/index.js", + "sha256": "aa127ff1752b7d9c7415c5c7bb6994d9aa722b81bcbcab4bd48316b013d23bf3", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 616 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io-parser/node_modules/debug/src/node.js", + "sha256": "f237adcb52849de7c128f57e0468b52353c529a6c8341810477c0e7144359559", + "language": "JavaScript", + "lines": 263, + "truncated": false, + "block": 1, + "row": 1283 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io-parser/node_modules/ms/index.js", + "sha256": "55986972f5f3c9446f876c576e1cd30fd4f04cd26527efbb5ad834637c740e4c", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1169 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io/client-dist/socket.io.js", + "sha256": "9ba7bcdd5593ca3ee030f699f5d3643349b4c9661ac509f683b39618b2966a68", + "language": "JavaScript", + "lines": 6046, + "truncated": false, + "block": 1, + "row": 1552 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io/client-dist/socket.io.min.js", + "sha256": "e8da407a321da9d28520d362f6202b458b1f5718240de5d47ab5dbc8911842e7", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 1, + "row": 1539 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io/client-dist/socket.io.msgpack.min.js", + "sha256": "008f9b176366b413dce23cce00187dfa708c0c180083def9855fc1c1f60694ae", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 1, + "row": 1540 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io/dist/broadcast-operator.d.ts", + "sha256": "7310329579c7cee56637f843669ed4a2448b7731eec33ce2be9e8b5effa9b0e6", + "language": "TypeScript", + "lines": 144, + "truncated": false, + "block": 1, + "row": 12130 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io/dist/broadcast-operator.js", + "sha256": "7693fa52e466ba35f889f068d44c539c4328346e24a900c4fbb87f897a9b3555", + "language": "JavaScript", + "lines": 233, + "truncated": false, + "block": 1, + "row": 1356 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io/dist/client.d.ts", + "sha256": "cea12c41a0b50f826fd57bd459af98a96fe4cd12d905d1567e03c2e90cc9466d", + "language": "TypeScript", + "lines": 110, + "truncated": false, + "block": 1, + "row": 12105 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io/dist/client.js", + "sha256": "b9b218e47da4451f7d06ad37a8347ce8fe81585e0018aa6bcc7401145a7e0a5d", + "language": "JavaScript", + "lines": 266, + "truncated": false, + "block": 1, + "row": 1380 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io/dist/index.d.ts", + "sha256": "62309f23ab3a0cc42ffe8b433b12d80e8e1acc8c84107d5aa1659a7d20bb7000", + "language": "TypeScript", + "lines": 403, + "truncated": false, + "block": 1, + "row": 12169 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io/dist/index.js", + "sha256": "22f685cd1454a6aafb6551386e0645440c578932406d89bff72ede1070298111", + "language": "JavaScript", + "lines": 512, + "truncated": false, + "block": 1, + "row": 1469 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io/dist/namespace.d.ts", + "sha256": "9ae43c672bbce5b194cef8607c953eec1927b01af41c325f1bdd5f26f3834ea0", + "language": "TypeScript", + "lines": 170, + "truncated": false, + "block": 1, + "row": 12136 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io/dist/namespace.js", + "sha256": "f729fb3acff0f9a609859f5c907b312bac15cde81cdf3ee478ffcd88adf445c4", + "language": "JavaScript", + "lines": 265, + "truncated": false, + "block": 1, + "row": 1375 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io/dist/parent-namespace.d.ts", + "sha256": "946cc1b742217c2770427a7abcb1147c664aa939a77822ff9036533f6d9e8ee8", + "language": "TypeScript", + "lines": 14, + "truncated": false, + "block": 1, + "row": 12045 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io/dist/parent-namespace.js", + "sha256": "1b41cf245be7d3dd36b47870ae4a99ee6e32c312a3909af15285e44faa08a0a4", + "language": "JavaScript", + "lines": 39, + "truncated": false, + "block": 1, + "row": 951 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io/dist/socket.d.ts", + "sha256": "906f138e88053825be6a1b63f80506773fa1355e8e1427cd9aea733c8f230323", + "language": "TypeScript", + "lines": 346, + "truncated": false, + "block": 1, + "row": 12160 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io/dist/socket.js", + "sha256": "c6525b1c14c654982552be1d2c618a5f4b7c05f688109765640a076bccb933ef", + "language": "JavaScript", + "lines": 557, + "truncated": false, + "block": 1, + "row": 1468 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io/dist/typed-events.d.ts", + "sha256": "e34c13b2d9d15cb284619be06ea9645827f56b89eb3f7e8b65ea854a78d3f620", + "language": "TypeScript", + "lines": 110, + "truncated": false, + "block": 1, + "row": 12135 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io/dist/typed-events.js", + "sha256": "b8d8c4c0e326eb8c8a337111156331cc1098c29de36cfa82a327dab8eab672c4", + "language": "JavaScript", + "lines": 81, + "truncated": false, + "block": 1, + "row": 1133 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io/node_modules/debug/src/browser.js", + "sha256": "4e3dc6d0e1db58a0d74206b443f35582d3b717be56a0f6d030c34af6c2ad9f62", + "language": "JavaScript", + "lines": 269, + "truncated": false, + "block": 1, + "row": 1329 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io/node_modules/debug/src/common.js", + "sha256": "ae6855e9f5ef6687aa8f76e69dd1854f1b99985146434daff310150083cfde02", + "language": "JavaScript", + "lines": 261, + "truncated": false, + "block": 1, + "row": 1332 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io/node_modules/debug/src/index.js", + "sha256": "aa127ff1752b7d9c7415c5c7bb6994d9aa722b81bcbcab4bd48316b013d23bf3", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 616 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io/node_modules/debug/src/node.js", + "sha256": "f237adcb52849de7c128f57e0468b52353c529a6c8341810477c0e7144359559", + "language": "JavaScript", + "lines": 263, + "truncated": false, + "block": 1, + "row": 1283 + }, + { + "path": "ServerClient_FKModel/node_modules/socket.io/node_modules/ms/index.js", + "sha256": "55986972f5f3c9446f876c576e1cd30fd4f04cd26527efbb5ad834637c740e4c", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1169 + }, + { + "path": "ServerClient_FKModel/node_modules/statuses/index.js", + "sha256": "4f8b0e8e9e9cff773ba540daf8a065d9b19b2ee1d108acc0172614f81b11ef0b", + "language": "JavaScript", + "lines": 113, + "truncated": false, + "block": 1, + "row": 1065 + }, + { + "path": "ServerClient_FKModel/node_modules/string-width/index.js", + "sha256": "7d88178fb35726264fa3a8500abeae44d5b585491edf3cd5b0ecf4dec1bbb299", + "language": "JavaScript", + "lines": 37, + "truncated": false, + "block": 1, + "row": 748 + }, + { + "path": "ServerClient_FKModel/node_modules/string_decoder/lib/string_decoder.js", + "sha256": "f1d36d47b2c579063392c1a68963467f2d4f51a069af09eb068d974c63ee3b37", + "language": "JavaScript", + "lines": 296, + "truncated": false, + "block": 1, + "row": 1423 + }, + { + "path": "ServerClient_FKModel/node_modules/strip-ansi/index.js", + "sha256": "02abcd70c31523c8c34ffaa7222629ae14b12ccd425e49ffa964a5051614691c", + "language": "JavaScript", + "lines": 6, + "truncated": false, + "block": 1, + "row": 568 + }, + { + "path": "ServerClient_FKModel/node_modules/strip-json-comments/index.js", + "sha256": "3fe8c034bfc649c8e80452f4c7052153a49c89a579f3f87a4df6af8bab5ce2b9", + "language": "JavaScript", + "lines": 70, + "truncated": false, + "block": 1, + "row": 1005 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-fs/index.js", + "sha256": "593e90fc29525bfb805d60494a94a43cc631ca756092fa378f418cde709c40f3", + "language": "JavaScript", + "lines": 351, + "truncated": false, + "block": 1, + "row": 1426 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-fs/test/index.js", + "sha256": "6490f85a8f35486db58cc97b076b612015583b3c449bdfd16c803abec155c2f3", + "language": "JavaScript", + "lines": 346, + "truncated": false, + "block": 1, + "row": 1416 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-stream/extract.js", + "sha256": "6b5edd072ee880c1c23c540d92089d105ea342f9dcbacbf04fda934c090b8a0d", + "language": "JavaScript", + "lines": 257, + "truncated": false, + "block": 1, + "row": 1325 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-stream/headers.js", + "sha256": "3bcd61e952038c935c2ea17a891f223b218b3a08decc75c4ea5dec9123ae38a9", + "language": "JavaScript", + "lines": 295, + "truncated": false, + "block": 1, + "row": 1389 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-stream/index.js", + "sha256": "0db9eceef5224dbc34c224c398b50eef4b99f937c80c81f660928615a248ed4f", + "language": "JavaScript", + "lines": 2, + "truncated": false, + "block": 1, + "row": 537 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-stream/node_modules/readable-stream/errors-browser.js", + "sha256": "346033597378d23e59068d120d6257f7cd85ae88c40b1f85c3329cece0d119c4", + "language": "JavaScript", + "lines": 127, + "truncated": false, + "block": 1, + "row": 1249 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-stream/node_modules/readable-stream/errors.js", + "sha256": "7028cca95b2f124345bd5b816e0d8184e7b7d208fe0aa76eb38df43e8644fd03", + "language": "JavaScript", + "lines": 116, + "truncated": false, + "block": 1, + "row": 1223 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-stream/node_modules/readable-stream/experimentalWarning.js", + "sha256": "5f9beff594347ba6765b806ec36e25699be1407627e2ee91be5d609e40baacb8", + "language": "JavaScript", + "lines": 17, + "truncated": false, + "block": 1, + "row": 689 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-stream/node_modules/readable-stream/lib/_stream_duplex.js", + "sha256": "c3d976062b770b4a88c91d244557bbe9a828b55dc2de1f9ac85c2d5e909389c4", + "language": "JavaScript", + "lines": 139, + "truncated": false, + "block": 1, + "row": 1265 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-stream/node_modules/readable-stream/lib/_stream_passthrough.js", + "sha256": "14475641ec1d85dcbf95e2555fedb04bf02f8482e08822a5a09b01ddc6389f5f", + "language": "JavaScript", + "lines": 39, + "truncated": false, + "block": 1, + "row": 996 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-stream/node_modules/readable-stream/lib/_stream_readable.js", + "sha256": "c8d010d85186209997a60b3cf1b653a77a88490a3e11e015c2b5eb2d56c30fe7", + "language": "JavaScript", + "lines": 1124, + "truncated": false, + "block": 1, + "row": 1522 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-stream/node_modules/readable-stream/lib/_stream_transform.js", + "sha256": "d85bb2b8c6ba3cf71e6ae759342df89dee95981c6856e9f4dc0b85d70cf60b59", + "language": "JavaScript", + "lines": 201, + "truncated": false, + "block": 1, + "row": 1388 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-stream/node_modules/readable-stream/lib/_stream_writable.js", + "sha256": "e97dc3728c1ba71414f84cb44cb4c4ecefdf0fdd1c3242a5f447e08ed20cca6f", + "language": "JavaScript", + "lines": 697, + "truncated": false, + "block": 1, + "row": 1496 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-stream/node_modules/readable-stream/lib/internal/streams/async_iterator.js", + "sha256": "3a752f2fcb0de353265f2d4928126183b5a08d9c9eb6aa4fab74808286e69844", + "language": "JavaScript", + "lines": 207, + "truncated": false, + "block": 1, + "row": 1324 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-stream/node_modules/readable-stream/lib/internal/streams/buffer_list.js", + "sha256": "10f06e02f00b1e4c28afd01cd4b1ecf280c75c59e97fb8611ac014bdd614d2ad", + "language": "JavaScript", + "lines": 210, + "truncated": false, + "block": 1, + "row": 1344 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-stream/node_modules/readable-stream/lib/internal/streams/destroy.js", + "sha256": "54c7b9c8319baeffa83840ae559b5910f530bdca530292d9be190236f219a7b3", + "language": "JavaScript", + "lines": 105, + "truncated": false, + "block": 1, + "row": 1182 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-stream/node_modules/readable-stream/lib/internal/streams/end-of-stream.js", + "sha256": "75da6b5b0634012017a6252c6e130335de7775e5a02f10817d02af47afa8bb8d", + "language": "JavaScript", + "lines": 104, + "truncated": false, + "block": 1, + "row": 1179 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-stream/node_modules/readable-stream/lib/internal/streams/from-browser.js", + "sha256": "4b4404c7bd6f66a2175cb7a29c60ce4395c055775ec45eaa35af4357656f604f", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 548 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-stream/node_modules/readable-stream/lib/internal/streams/from.js", + "sha256": "9c67e32e4f371b72c83265a077c7e317866170134ff8dca4cc24313c5037426b", + "language": "JavaScript", + "lines": 64, + "truncated": false, + "block": 1, + "row": 1184 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-stream/node_modules/readable-stream/lib/internal/streams/pipeline.js", + "sha256": "16576b2011c78d0c5ceccdeba7451e83e1bd86f2c3f31c05de7df4ccfb149c2a", + "language": "JavaScript", + "lines": 97, + "truncated": false, + "block": 1, + "row": 1113 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-stream/node_modules/readable-stream/lib/internal/streams/state.js", + "sha256": "cdbed99634b523be655225df1547cd00295e3041cb02848c652ddad5e6787e49", + "language": "JavaScript", + "lines": 27, + "truncated": false, + "block": 1, + "row": 749 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-stream/node_modules/readable-stream/lib/internal/streams/stream-browser.js", + "sha256": "72d46a15491627d8fb1489a47d03583cfe5c21902918016ab532b53e615e5a9a", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 524 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-stream/node_modules/readable-stream/lib/internal/streams/stream.js", + "sha256": "1e7903927df33aadb3659ecce55266c9c851da65ce6c8b723a60a305c1c5422c", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 516 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-stream/node_modules/readable-stream/readable-browser.js", + "sha256": "c4ff3ea62ef65a2c68ea721dcbd58b621150660facd02be95ebfc556c4dd123f", + "language": "JavaScript", + "lines": 9, + "truncated": false, + "block": 1, + "row": 692 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-stream/node_modules/readable-stream/readable.js", + "sha256": "2944f1d3c8c5d5c5e07e7c30d6cbef5fc37440b7c73de47aeb37fa8424f04bf1", + "language": "JavaScript", + "lines": 16, + "truncated": false, + "block": 1, + "row": 745 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-stream/pack.js", + "sha256": "dfa9a306e8edf3c8b0445d5cc772e6a0a74382dfcbf19ebd3be06e8f31fbf94e", + "language": "JavaScript", + "lines": 255, + "truncated": false, + "block": 1, + "row": 1311 + }, + { + "path": "ServerClient_FKModel/node_modules/tar-stream/sandbox.js", + "sha256": "08c242a5ff86e63801840b6cd6524102f9d044c83369e5245f140bc9994622e9", + "language": "JavaScript", + "lines": 11, + "truncated": false, + "block": 1, + "row": 641 + }, + { + "path": "ServerClient_FKModel/node_modules/toidentifier/index.js", + "sha256": "6df7c8b218f33abc33563a33de06b4bbb1a43a6232b4c31cb01c55c38ed1cba8", + "language": "JavaScript", + "lines": 30, + "truncated": false, + "block": 1, + "row": 693 + }, + { + "path": "ServerClient_FKModel/node_modules/tunnel-agent/index.js", + "sha256": "76ffc88cb84b3f20c2d7999e4d7c4646e6a450132fde37564c8189bf2c960018", + "language": "JavaScript", + "lines": 244, + "truncated": false, + "block": 1, + "row": 1362 + }, + { + "path": "ServerClient_FKModel/node_modules/type-is/index.js", + "sha256": "4a94338bd746c6b17dd8681f21124f84ed2cdd4a16022849d28900d5e568642a", + "language": "JavaScript", + "lines": 266, + "truncated": false, + "block": 1, + "row": 1310 + }, + { + "path": "ServerClient_FKModel/node_modules/unpipe/index.js", + "sha256": "69cd57b5cdd08c42410ebc0d92235e334f1fb985e6eb2dcfb1c692db674411bd", + "language": "JavaScript", + "lines": 69, + "truncated": false, + "block": 1, + "row": 901 + }, + { + "path": "ServerClient_FKModel/node_modules/util-deprecate/browser.js", + "sha256": "abaef53ebcdc98f3655331f834986a2d11b6a824f58d670369669246d1b7b69b", + "language": "JavaScript", + "lines": 67, + "truncated": false, + "block": 1, + "row": 993 + }, + { + "path": "ServerClient_FKModel/node_modules/util-deprecate/node.js", + "sha256": "9a86a29fa34a99b861e707345fb1d1e2e55a6c23edb8f992bed57cc607f42d8e", + "language": "JavaScript", + "lines": 6, + "truncated": false, + "block": 1, + "row": 552 + }, + { + "path": "ServerClient_FKModel/node_modules/utils-merge/index.js", + "sha256": "ec62860d6445addffd574f640451ea92e0558b6df793b2e0f1c7175fc2ff6366", + "language": "JavaScript", + "lines": 23, + "truncated": false, + "block": 1, + "row": 648 + }, + { + "path": "ServerClient_FKModel/node_modules/vary/index.js", + "sha256": "8e40311960636d40473c57e335bbca115036766bf150df296b941256432ab410", + "language": "JavaScript", + "lines": 149, + "truncated": false, + "block": 1, + "row": 1166 + }, + { + "path": "ServerClient_FKModel/node_modules/wide-align/align.js", + "sha256": "6d29d75e7e7bc9b9dddf7111a024db41410a0a7d36f90bf06e6be77d1366c03e", + "language": "JavaScript", + "lines": 65, + "truncated": false, + "block": 1, + "row": 967 + }, + { + "path": "ServerClient_FKModel/node_modules/wrappy/wrappy.js", + "sha256": "153453c4d84a3c2f13589c37055a7daff61d48475dcce554f7eedad15fc7b3e5", + "language": "JavaScript", + "lines": 33, + "truncated": false, + "block": 1, + "row": 823 + }, + { + "path": "ServerClient_FKModel/node_modules/ws/browser.js", + "sha256": "010da44addea1d88b2b732540c3f1fd0cbcb28926b96623d4c64222e0ead2d0e", + "language": "JavaScript", + "lines": 8, + "truncated": false, + "block": 1, + "row": 572 + }, + { + "path": "ServerClient_FKModel/node_modules/ws/index.js", + "sha256": "c2b0c9905540a51acb276523bb024ef3c11bd118b03a90d92962080ebd07fec9", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 610 + }, + { + "path": "ServerClient_FKModel/node_modules/ws/lib/buffer-util.js", + "sha256": "da2088dcfa847be2b26a0c4fd46480e2a787b3120bcaceb98555654bbba53631", + "language": "JavaScript", + "lines": 129, + "truncated": false, + "block": 1, + "row": 1172 + }, + { + "path": "ServerClient_FKModel/node_modules/ws/lib/constants.js", + "sha256": "2c2e8f6abbb7c2314d5736ef0a8d11f04ddc3cf4faf1c710df5d75c4170e937e", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 598 + }, + { + "path": "ServerClient_FKModel/node_modules/ws/lib/event-target.js", + "sha256": "6bad3e83c4a8f113cfc40ef2757ecbc727e67c5e16ea8447cdc6e12af2b1554a", + "language": "JavaScript", + "lines": 184, + "truncated": false, + "block": 1, + "row": 1264 + }, + { + "path": "ServerClient_FKModel/node_modules/ws/lib/extension.js", + "sha256": "13b228a92d2dad9d1bffd09faaae6b64bfc1f713dd966010ad479a901c243a86", + "language": "JavaScript", + "lines": 223, + "truncated": false, + "block": 1, + "row": 1361 + }, + { + "path": "ServerClient_FKModel/node_modules/ws/lib/limiter.js", + "sha256": "e0469d4b83f6ba764b15f80e1766b75c136fbff68f048f4c050f0b1c7f065f69", + "language": "JavaScript", + "lines": 55, + "truncated": false, + "block": 1, + "row": 877 + }, + { + "path": "ServerClient_FKModel/node_modules/ws/lib/permessage-deflate.js", + "sha256": "433cd5543ca3f3423c0eaf27b4b1fe09211276bf16090a839d73f5fe809727ba", + "language": "JavaScript", + "lines": 517, + "truncated": false, + "block": 1, + "row": 1456 + }, + { + "path": "ServerClient_FKModel/node_modules/ws/lib/receiver.js", + "sha256": "f7a6fda3723be1b60e15fc877f08601cfbc18eb8dbbe79983c7453f902742adc", + "language": "JavaScript", + "lines": 507, + "truncated": false, + "block": 1, + "row": 1448 + }, + { + "path": "ServerClient_FKModel/node_modules/ws/lib/sender.js", + "sha256": "3f7526f281342bbac168e366cf8018ed919f9288db3b52f36f69d637f20bd691", + "language": "JavaScript", + "lines": 405, + "truncated": false, + "block": 1, + "row": 1437 + }, + { + "path": "ServerClient_FKModel/node_modules/ws/lib/stream.js", + "sha256": "503e6773f58a9fd05ac87be76b8fa88848dbc9800f09154f5191a6768bb687f8", + "language": "JavaScript", + "lines": 165, + "truncated": false, + "block": 1, + "row": 1233 + }, + { + "path": "ServerClient_FKModel/node_modules/ws/lib/validation.js", + "sha256": "793ee08de7ae2becd336189b6714087c262bfde80af862aa3fd197dce2369946", + "language": "JavaScript", + "lines": 104, + "truncated": false, + "block": 1, + "row": 1127 + }, + { + "path": "ServerClient_FKModel/node_modules/ws/lib/websocket-server.js", + "sha256": "65019eca81967a127eb139d0943f1799f915f19d2a58766e887d0708dbe5c2f5", + "language": "JavaScript", + "lines": 406, + "truncated": false, + "block": 1, + "row": 1444 + }, + { + "path": "ServerClient_FKModel/node_modules/ws/lib/websocket.js", + "sha256": "b5a6fa82d0ed96b3a7176216b72310239b9cb54217bb9ffb42a01f582ef69522", + "language": "JavaScript", + "lines": 943, + "truncated": false, + "block": 1, + "row": 1507 + }, + { + "path": "ServerClient_FKModel/public/Abubu/Abubu.js", + "sha256": "e7413851889e7d9357ac709474d7b9bf527a543714b8e9ff7ceb558e5c8145d0", + "language": "JavaScript", + "lines": 7182, + "truncated": true, + "block": 1, + "row": 1564 + }, + { + "path": "ServerClient_FKModel/public/Abubu/CopyAbubu.js", + "sha256": "378f7e9a1e7b3d4085f57a20b8e33055a66e3e5e80826458531921ec8cf2613c", + "language": "JavaScript", + "lines": 5907, + "truncated": true, + "block": 1, + "row": 1557 + }, + { + "path": "ServerClient_FKModel/public/Abubu/libs/dat.gui.js", + "sha256": "6d08eaf68fb88bd177c28a308e2f41dd24de2b79bb69a20a7a95c6935112aef0", + "language": "JavaScript", + "lines": 4292, + "truncated": false, + "block": 1, + "row": 1553 + }, + { + "path": "ServerClient_FKModel/public/Abubu/libs/gl-matrix.js", + "sha256": "c58f94f9c7f493186e8cc2ff6c742cfa96da2053d2e18c7da951514105c386ff", + "language": "JavaScript", + "lines": 6888, + "truncated": false, + "block": 1, + "row": 1550 + }, + { + "path": "ServerClient_FKModel/public/app/main.js", + "sha256": "9fa3215ebba65322a4326fb4a6cc790b1ac68672937c4f5cf1e0244cc6bbccd2", + "language": "JavaScript", + "lines": 1064, + "truncated": false, + "block": 1, + "row": 1523 + }, + { + "path": "ServerClient_FKModel/public/config.js", + "sha256": "ce56187b921c2a1c74501e5b32af86ba14ef6c4f2f51eacc37a9cf7c52bdad69", + "language": "JavaScript", + "lines": 26, + "truncated": false, + "block": 1, + "row": 827 + }, + { + "path": "ServerClient_FKModel/public/libs/OrbitControls.js", + "sha256": "cc75dd6b741dcfa888cf3aec04ebf2cef5474fd17d9aaabbd1babd4e720336e0", + "language": "JavaScript", + "lines": 1181, + "truncated": false, + "block": 1, + "row": 1516 + }, + { + "path": "ServerClient_FKModel/public/libs/image.js", + "sha256": "fa94cca1a5daac2b20be0112b0bbb9d153df0eef77b3728480ab1320760660b4", + "language": "JavaScript", + "lines": 25, + "truncated": false, + "block": 1, + "row": 809 + }, + { + "path": "ServerClient_FKModel/public/libs/require.js", + "sha256": "343e6141de328f583fd66e98eeb7a615c045f709ed25aa6772b6cb1d0f3b3287", + "language": "JavaScript", + "lines": 2142, + "truncated": false, + "block": 1, + "row": 1542 + }, + { + "path": "ServerClient_FKModel/public/libs/shader.js", + "sha256": "66f0205d474fe1d6d786fb26b24b7ed3a3ef55e96a2232e94e596cc778157fc0", + "language": "JavaScript", + "lines": 68, + "truncated": false, + "block": 1, + "row": 1112 + }, + { + "path": "ServerClient_FKModel/public/libs/stats.js", + "sha256": "4a3b988ff9f16571da0cf90190d8061819b26132affffbbd1557218ec3c05397", + "language": "JavaScript", + "lines": 5, + "truncated": false, + "block": 1, + "row": 1054 + }, + { + "path": "ServerClient_FKModel/public/libs/text.js", + "sha256": "8c31bc55a5c70471e6307c73fcf5f764764eaf79778511ced360b5db2617ed4f", + "language": "JavaScript", + "lines": 408, + "truncated": false, + "block": 1, + "row": 1474 + }, + { + "path": "ServerClient_FKModel/public/libs/three.js", + "sha256": "46a0958578491e4381f9fbdcadb600d4c8e194b60b39eba29c9ee2627827c7dc", + "language": "JavaScript", + "lines": 5923, + "truncated": true, + "block": 1, + "row": 1558 + }, + { + "path": "ServerClient_FKModel/public/libs/three.min.js", + "sha256": "98c8be8fd6c06d470515a9c33eb61100d40d673ac89f6dda77fb6b1fd635612d", + "language": "JavaScript", + "lines": 375, + "truncated": true, + "block": 1, + "row": 1561 + }, + { + "path": "ServerClient_FKModel/public/project.sh", + "sha256": "7c57bb25803c3e35ddac9851c47466a711cfea9326ead974d6ed00d4ebf4c0ed", + "language": "Shell", + "lines": 3, + "truncated": false, + "block": 1, + "row": 11112 + }, + { + "path": "ServerClient_FKModel/server.js", + "sha256": "7a3cc2154b46d780a165d27c86b8f82353b117dfbb1e1ef1743461ee24807a3f", + "language": "JavaScript", + "lines": 234, + "truncated": false, + "block": 1, + "row": 1372 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@serialport/binding-abstract/lib/index.js", + "sha256": "ad699b9b42ad45bf0476042cfb7a8a05affdc253bbc58ca4e23a907947020932", + "language": "JavaScript", + "lines": 222, + "truncated": false, + "block": 1, + "row": 1395 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@serialport/binding-abstract/node_modules/debug/src/common.js", + "sha256": "ae6855e9f5ef6687aa8f76e69dd1854f1b99985146434daff310150083cfde02", + "language": "JavaScript", + "lines": 261, + "truncated": false, + "block": 1, + "row": 1332 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@serialport/binding-abstract/node_modules/debug/src/index.js", + "sha256": "aa127ff1752b7d9c7415c5c7bb6994d9aa722b81bcbcab4bd48316b013d23bf3", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 616 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@serialport/binding-abstract/node_modules/debug/src/node.js", + "sha256": "f237adcb52849de7c128f57e0468b52353c529a6c8341810477c0e7144359559", + "language": "JavaScript", + "lines": 263, + "truncated": false, + "block": 1, + "row": 1283 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@serialport/binding-abstract/node_modules/ms/index.js", + "sha256": "55986972f5f3c9446f876c576e1cd30fd4f04cd26527efbb5ad834637c740e4c", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1169 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@serialport/bindings/lib/index.js", + "sha256": "a1712039aa76f42c0bf5da9b0b3cc4080fc3da8b7366ad6f456d2348d1f55769", + "language": "JavaScript", + "lines": 15, + "truncated": false, + "block": 1, + "row": 645 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@serialport/bindings/lib/legacy.js", + "sha256": "5b81d2da89374aca3e891db5f79186e1c7288e73e4be39aadc16377e81d276bd", + "language": "JavaScript", + "lines": 26, + "truncated": false, + "block": 1, + "row": 726 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@serialport/bindings/lib/win32-sn-parser.js", + "sha256": "5e814ca196ff403a42fe5ab90c7555325496841f410ae6a35b1f0aa6415364e7", + "language": "JavaScript", + "lines": 14, + "truncated": false, + "block": 1, + "row": 593 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@serialport/bindings/lib/win32.js", + "sha256": "e51b6213a8da449e23cc99a4858a51269c1a662d95c37b8cc55f85566469e501", + "language": "JavaScript", + "lines": 123, + "truncated": false, + "block": 1, + "row": 1167 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@serialport/bindings/node_modules/debug/src/common.js", + "sha256": "ae6855e9f5ef6687aa8f76e69dd1854f1b99985146434daff310150083cfde02", + "language": "JavaScript", + "lines": 261, + "truncated": false, + "block": 1, + "row": 1332 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@serialport/bindings/node_modules/debug/src/index.js", + "sha256": "aa127ff1752b7d9c7415c5c7bb6994d9aa722b81bcbcab4bd48316b013d23bf3", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 616 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@serialport/bindings/node_modules/debug/src/node.js", + "sha256": "f237adcb52849de7c128f57e0468b52353c529a6c8341810477c0e7144359559", + "language": "JavaScript", + "lines": 263, + "truncated": false, + "block": 1, + "row": 1283 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@serialport/bindings/node_modules/ms/index.js", + "sha256": "55986972f5f3c9446f876c576e1cd30fd4f04cd26527efbb5ad834637c740e4c", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1169 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@serialport/parser-byte-length/lib/index.js", + "sha256": "aa1abbd2d1f8f96922fe20b7f46a0209fd8a34f7f78b22380dbbbd89f5d02c5c", + "language": "JavaScript", + "lines": 55, + "truncated": false, + "block": 1, + "row": 986 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@serialport/parser-cctalk/lib/index.js", + "sha256": "6f1bacc8b7264ac68f2c323f1b3207113739cacb0b1ad583c7ceb75c98bd5f25", + "language": "JavaScript", + "lines": 52, + "truncated": false, + "block": 1, + "row": 994 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@serialport/parser-delimiter/lib/index.js", + "sha256": "e45d312347f020d99c6166b254bb22c278627bc651224257525bbe3bce86680e", + "language": "JavaScript", + "lines": 49, + "truncated": false, + "block": 1, + "row": 984 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@serialport/parser-inter-byte-timeout/lib/index.js", + "sha256": "42e9896c6f5de926d13a2624387fbe2639aabbe420f6d31d1361c01d72c169d7", + "language": "JavaScript", + "lines": 71, + "truncated": false, + "block": 1, + "row": 1111 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@serialport/parser-readline/lib/index.js", + "sha256": "712d3e9d03d2a54ab1f3ffd11f89307cd907f2f2c560bf1bcd434a247770f700", + "language": "JavaScript", + "lines": 30, + "truncated": false, + "block": 1, + "row": 848 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@serialport/parser-ready/lib/index.js", + "sha256": "5f5e9821ceb587b7f8a12deaade4f64e236a5b557bda921389a2c34b0377deb1", + "language": "JavaScript", + "lines": 63, + "truncated": false, + "block": 1, + "row": 1055 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@serialport/parser-regex/lib/index.js", + "sha256": "e1ffb95e6ca3897434f540205a0cef48e01ceafb5940eed06df816bd8e4b483d", + "language": "JavaScript", + "lines": 53, + "truncated": false, + "block": 1, + "row": 948 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@serialport/stream/lib/index.js", + "sha256": "8f7e1efc9c410f19b6a130d11c28a1e3e121b32fb54006d72586ea9a6b24ee55", + "language": "JavaScript", + "lines": 656, + "truncated": false, + "block": 1, + "row": 1502 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@serialport/stream/node_modules/debug/src/common.js", + "sha256": "ae6855e9f5ef6687aa8f76e69dd1854f1b99985146434daff310150083cfde02", + "language": "JavaScript", + "lines": 261, + "truncated": false, + "block": 1, + "row": 1332 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@serialport/stream/node_modules/debug/src/index.js", + "sha256": "aa127ff1752b7d9c7415c5c7bb6994d9aa722b81bcbcab4bd48316b013d23bf3", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 616 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@serialport/stream/node_modules/debug/src/node.js", + "sha256": "f237adcb52849de7c128f57e0468b52353c529a6c8341810477c0e7144359559", + "language": "JavaScript", + "lines": 263, + "truncated": false, + "block": 1, + "row": 1283 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@serialport/stream/node_modules/ms/index.js", + "sha256": "55986972f5f3c9446f876c576e1cd30fd4f04cd26527efbb5ad834637c740e4c", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1169 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/component-emitter/index.d.ts", + "sha256": "a3a88c1869ba1022dfaefac47ff7a984ec62510e9b4d60988f91d5e523266c34", + "language": "TypeScript", + "lines": 22, + "truncated": false, + "block": 1, + "row": 12047 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/cookie/index.d.ts", + "sha256": "405ad6db8aa3d5618c3be21cde8125de28a3e40690eb05136c123f420c05c082", + "language": "TypeScript", + "lines": 135, + "truncated": false, + "block": 1, + "row": 12147 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/cors/index.d.ts", + "sha256": "a68969f643e0cb091046a9437b64cb1880a081fc07c70a4717b0edef2a38bc85", + "language": "TypeScript", + "lines": 58, + "truncated": false, + "block": 1, + "row": 12087 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/assert.d.ts", + "sha256": "19d580a3b42ad5caeaee266ae958260e23f2df0549ee201c886c8bd7a4f01d4e", + "language": "TypeScript", + "lines": 129, + "truncated": false, + "block": 1, + "row": 12139 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/assert/strict.d.ts", + "sha256": "c7bdc99177a2a94d25fb13722adaaf5b3291bf70b4d1b27584ba189dd3889ba3", + "language": "TypeScript", + "lines": 4, + "truncated": false, + "block": 1, + "row": 12010 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/async_hooks.d.ts", + "sha256": "d20f08527645f62facb2d66c2b7bd31ea964b59c897d00bddb1efe8c13890b72", + "language": "TypeScript", + "lines": 233, + "truncated": false, + "block": 1, + "row": 12162 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/base.d.ts", + "sha256": "e61a21e9418f279bc480394a94d1581b2dee73747adcbdef999b6737e34d721b", + "language": "TypeScript", + "lines": 19, + "truncated": false, + "block": 1, + "row": 12062 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/buffer.d.ts", + "sha256": "5726b5ce952dc5beaeb08d5f64236632501568a54a390363d2339ba1dc5393b1", + "language": "TypeScript", + "lines": 26, + "truncated": false, + "block": 1, + "row": 12051 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/child_process.d.ts", + "sha256": "674bedbfd2004e233e2a266a3d2286e524f0d58787a98522d834d6ccda1d215a", + "language": "TypeScript", + "lines": 514, + "truncated": false, + "block": 1, + "row": 12190 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/cluster.d.ts", + "sha256": "714637d594e1a38a075091fe464ca91c6abc0b154784b4287f6883200e28ccef", + "language": "TypeScript", + "lines": 266, + "truncated": false, + "block": 1, + "row": 12175 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/console.d.ts", + "sha256": "23edba5f47d3409810c563fe8034ae2c59e718e1ef8570f4152ccdde1915a096", + "language": "TypeScript", + "lines": 137, + "truncated": false, + "block": 1, + "row": 12140 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/constants.d.ts", + "sha256": "0e9c55f894ca2d9cf63b5b0d43a8cec1772dd560233fd16275bc7a485eb82f83", + "language": "TypeScript", + "lines": 19, + "truncated": false, + "block": 1, + "row": 12046 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/crypto.d.ts", + "sha256": "4105385afd60b90ebac359d02a186250885839122850d776c0ad0e327c1afb65", + "language": "TypeScript", + "lines": 1274, + "truncated": false, + "block": 1, + "row": 12196 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/dgram.d.ts", + "sha256": "5f0a09de75bd965c21dc6d73671ba88830272f9ed62897bb0aa9754b369b1eed", + "language": "TypeScript", + "lines": 145, + "truncated": false, + "block": 1, + "row": 12152 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/dns.d.ts", + "sha256": "12b2ab05a3ededc0e8938f2e16e4e2e30fc82b6d97b414067c26253f26fce69a", + "language": "TypeScript", + "lines": 326, + "truncated": false, + "block": 1, + "row": 12172 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/dns/promises.d.ts", + "sha256": "e4ab7077b5adff3156d258a284986dc85e0bcf0fff1670df5c7f83efc25d4cc6", + "language": "TypeScript", + "lines": 101, + "truncated": false, + "block": 1, + "row": 12126 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/domain.d.ts", + "sha256": "06d2be99c3dd2ff52114d02ee443ba486ab482423df1941d3c97d6a92e924d70", + "language": "TypeScript", + "lines": 28, + "truncated": false, + "block": 1, + "row": 12055 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/events.d.ts", + "sha256": "eb15e56611c2a853526a2e202234dd1676bd37cc2fcdbd9843470f7dafb37f15", + "language": "TypeScript", + "lines": 87, + "truncated": false, + "block": 1, + "row": 12123 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/fs.d.ts", + "sha256": "2e0b4284620082f63b144da8096b207e9e9590c0e599834332b90624db0cc4a8", + "language": "TypeScript", + "lines": 2261, + "truncated": false, + "block": 1, + "row": 12200 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/fs/promises.d.ts", + "sha256": "c98ce957db9eebd75f53edda3f6893e05ab2d2283b5667b18e31bcdb6427ed10", + "language": "TypeScript", + "lines": 561, + "truncated": false, + "block": 1, + "row": 12191 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/globals.d.ts", + "sha256": "5402314c88d0127f63f94a0272f79e04ea0fc010ff6da6613807504c4163a1ad", + "language": "TypeScript", + "lines": 649, + "truncated": false, + "block": 1, + "row": 12188 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/globals.global.d.ts", + "sha256": "2708349d5a11a5c2e5f3a0765259ebe7ee00cdcc8161cb9990cb4910328442a1", + "language": "TypeScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 12004 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/http.d.ts", + "sha256": "37eed30fc8318b8ac76eac6f41d0758a9d0bffd8f3ff353e3ad0f8717dd08d92", + "language": "TypeScript", + "lines": 428, + "truncated": false, + "block": 1, + "row": 12179 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/http2.d.ts", + "sha256": "2f69728fd1ca1f381879bbf20a42ae47a8f7286e000afd138c6cf870d90d882f", + "language": "TypeScript", + "lines": 968, + "truncated": false, + "block": 1, + "row": 12199 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/https.d.ts", + "sha256": "1978992206803f5761e99e893d93b25abc818c5fe619674fdf2ae02b29f641ba", + "language": "TypeScript", + "lines": 40, + "truncated": false, + "block": 1, + "row": 12089 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/index.d.ts", + "sha256": "6c9c7e459e013ddf52c70b90f88bbdd925e483ef984d80f9bffb501029974e82", + "language": "TypeScript", + "lines": 58, + "truncated": false, + "block": 1, + "row": 12121 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/inspector.d.ts", + "sha256": "05fbe81f09fc455a2c343d2458d2b3c600c90b92b22926be765ee79326be9466", + "language": "TypeScript", + "lines": 3048, + "truncated": false, + "block": 1, + "row": 12202 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/module.d.ts", + "sha256": "8e7d6dae9e19bbe47600dcfd4418db85b30ae7351474ea0aad5e628f9845d340", + "language": "TypeScript", + "lines": 57, + "truncated": false, + "block": 1, + "row": 12091 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/net.d.ts", + "sha256": "2c381d36201776828c67a307ad5fd8cbcf9ecaffb1fc7f77f7ce433d1a632b7f", + "language": "TypeScript", + "lines": 328, + "truncated": false, + "block": 1, + "row": 12174 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/os.d.ts", + "sha256": "32542c4660ecda892a333a533feedba31738ee538ef6a78eb73af647137bc3fc", + "language": "TypeScript", + "lines": 243, + "truncated": false, + "block": 1, + "row": 12156 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/path.d.ts", + "sha256": "0ecacea5047d1a7d350e7049dbd22f26435be5e8736a81a56afec5b3264db1ca", + "language": "TypeScript", + "lines": 158, + "truncated": false, + "block": 1, + "row": 12149 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/perf_hooks.d.ts", + "sha256": "ffcb4ebde21f83370ed402583888b28651d2eb7f05bfec9482eb46d82adedd7f", + "language": "TypeScript", + "lines": 275, + "truncated": false, + "block": 1, + "row": 12165 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/process.d.ts", + "sha256": "fcb95c45150c717706119f12f2a3639d51baa041cd5bb441eb8501e04b52c501", + "language": "TypeScript", + "lines": 453, + "truncated": false, + "block": 1, + "row": 12182 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/punycode.d.ts", + "sha256": "a7b43c69f9602d198825e403ee34e5d64f83c48b391b2897e8c0e6f72bca35f8", + "language": "TypeScript", + "lines": 86, + "truncated": false, + "block": 1, + "row": 12125 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/querystring.d.ts", + "sha256": "f4a3fc4efc6944e7b7bd4ccfa45e0df68b6359808e6cf9d061f04fd964a7b2d3", + "language": "TypeScript", + "lines": 32, + "truncated": false, + "block": 1, + "row": 12072 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/readline.d.ts", + "sha256": "73cad675aead7a2c05cf934e7e700c61d84b2037ac1d576c3f751199b25331da", + "language": "TypeScript", + "lines": 174, + "truncated": false, + "block": 1, + "row": 12153 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/repl.d.ts", + "sha256": "8c3137ba3583ec18484429ec1c8eff89efdc42730542f157b38b102fdccc0c71", + "language": "TypeScript", + "lines": 399, + "truncated": false, + "block": 1, + "row": 12177 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/stream.d.ts", + "sha256": "2b6906b19436e07d874a51a5829d94ab690337c4ee652735ab422a8f102168be", + "language": "TypeScript", + "lines": 468, + "truncated": false, + "block": 1, + "row": 12187 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/stream/promises.d.ts", + "sha256": "1b98a8704d0c68520ccb02ac44782b7ffdaab40d23d2fa00e13923b528587f8b", + "language": "TypeScript", + "lines": 71, + "truncated": false, + "block": 1, + "row": 12108 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/string_decoder.d.ts", + "sha256": "94ca7beec4e274d32362b54e0133152f7b4be9487db7b005070c03880b6363aa", + "language": "TypeScript", + "lines": 11, + "truncated": false, + "block": 1, + "row": 12015 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/timers.d.ts", + "sha256": "911175d5a29fce5f6f471bcab94524474a1f99eec9cb86fe96505a40ce75f972", + "language": "TypeScript", + "lines": 34, + "truncated": false, + "block": 1, + "row": 12077 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/timers/promises.d.ts", + "sha256": "8b4f4519834b57645d2483af74d6f5d1675260a5b0e9aa6026f3e021edd2c5e9", + "language": "TypeScript", + "lines": 17, + "truncated": false, + "block": 1, + "row": 12038 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/tls.d.ts", + "sha256": "bbf21f210782db4193359010a4710786add43e3b50aa42fc0d371f45b4e4d8d3", + "language": "TypeScript", + "lines": 783, + "truncated": false, + "block": 1, + "row": 12192 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/trace_events.d.ts", + "sha256": "0b7733d83619ac4e3963e2a9f7c75dc1e9af6850cb2354c9554977813092c10a", + "language": "TypeScript", + "lines": 65, + "truncated": false, + "block": 1, + "row": 12098 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/ts3.6/base.d.ts", + "sha256": "210ef68f34baca2a4499c07a51f05d51b4f0ef01d64efea3017cb3bc31c37e33", + "language": "TypeScript", + "lines": 66, + "truncated": false, + "block": 1, + "row": 12112 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/tty.d.ts", + "sha256": "3ce933f0c3955f67f67eb7d6b5c83c2c54a18472c1d6f2bb651e51dd40c84837", + "language": "TypeScript", + "lines": 70, + "truncated": false, + "block": 1, + "row": 12106 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/url.d.ts", + "sha256": "631e96db896d645f7132c488ad34a16d71fd2be9f44696f8c98289ee1c8cbfa9", + "language": "TypeScript", + "lines": 120, + "truncated": false, + "block": 1, + "row": 12129 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/util.d.ts", + "sha256": "2c77230d381cba81eb6f87cda2fbfff6c0427c6546c2e2590110effff37c58f7", + "language": "TypeScript", + "lines": 211, + "truncated": false, + "block": 1, + "row": 12170 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/v8.d.ts", + "sha256": "da86ee9a2f09a4583db1d5e37815894967e1f694ad9f3c25e84e0e4d40411e14", + "language": "TypeScript", + "lines": 191, + "truncated": false, + "block": 1, + "row": 12150 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/vm.d.ts", + "sha256": "141a943e5690105898a67537a470f70b56d0e183441b56051d929e902376b7b2", + "language": "TypeScript", + "lines": 156, + "truncated": false, + "block": 1, + "row": 12145 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/wasi.d.ts", + "sha256": "780058f4a804c8bdcdd2f60e7af64b2bc57d149c1586ee3db732a84d659a50bf", + "language": "TypeScript", + "lines": 90, + "truncated": false, + "block": 1, + "row": 12119 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/worker_threads.d.ts", + "sha256": "0124e458b12ba82b08c87220a1c9d4fb7701dcda8f11e28f7d7266281501bcba", + "language": "TypeScript", + "lines": 245, + "truncated": false, + "block": 1, + "row": 12167 + }, + { + "path": "ServerClient_FixedDelay/node_modules/@types/node/zlib.d.ts", + "sha256": "515ef1d99036ff0dafa5bf738e02222edea94e0d97a0aa0ff277ac5e96b57977", + "language": "TypeScript", + "lines": 365, + "truncated": false, + "block": 1, + "row": 12173 + }, + { + "path": "ServerClient_FixedDelay/node_modules/accepts/index.js", + "sha256": "be2decbd50610e8f995c1e312ee4dd6d7c1244cfdf03ee4c4a3da68e572dada1", + "language": "JavaScript", + "lines": 238, + "truncated": false, + "block": 1, + "row": 1303 + }, + { + "path": "ServerClient_FixedDelay/node_modules/array-flatten/array-flatten.js", + "sha256": "766ca145b6d25e3d60f352a716e8fa1876bcdf362c0767c360cf24f335bc281e", + "language": "JavaScript", + "lines": 64, + "truncated": false, + "block": 1, + "row": 919 + }, + { + "path": "ServerClient_FixedDelay/node_modules/base64id/lib/base64id.js", + "sha256": "b22f3bccc756717cccf3841102c662960ec5831c3600c7a8d8c2d8ceade168fa", + "language": "JavaScript", + "lines": 103, + "truncated": false, + "block": 1, + "row": 1106 + }, + { + "path": "ServerClient_FixedDelay/node_modules/bindings/bindings.js", + "sha256": "8e32a0d37f20bd6f7d5bdbf99d041aa27be47cbbe5172ac13ebf7380a10b3bf6", + "language": "JavaScript", + "lines": 221, + "truncated": false, + "block": 1, + "row": 1327 + }, + { + "path": "ServerClient_FixedDelay/node_modules/body-parser/index.js", + "sha256": "d584d690e2a5ffa3b9e7f13db3939a344d34f7ca38dc09b45af7c2fa7fe454e4", + "language": "JavaScript", + "lines": 157, + "truncated": false, + "block": 1, + "row": 1143 + }, + { + "path": "ServerClient_FixedDelay/node_modules/body-parser/lib/read.js", + "sha256": "61a96c9ad70f888cf3cdcb511118d150447ea3f14f7b7ba776a0e1cd70084dd7", + "language": "JavaScript", + "lines": 181, + "truncated": false, + "block": 1, + "row": 1231 + }, + { + "path": "ServerClient_FixedDelay/node_modules/body-parser/lib/types/json.js", + "sha256": "a34efbd3438dcd0a0060b4bda8ea75acaec3ae2b1a49460e25af950d15562276", + "language": "JavaScript", + "lines": 230, + "truncated": false, + "block": 1, + "row": 1290 + }, + { + "path": "ServerClient_FixedDelay/node_modules/body-parser/lib/types/raw.js", + "sha256": "4e9cc80a7ee8bd667c68c264b4c374b28e731246ddb6ec22c3968daf837e30a2", + "language": "JavaScript", + "lines": 101, + "truncated": false, + "block": 1, + "row": 1037 + }, + { + "path": "ServerClient_FixedDelay/node_modules/body-parser/lib/types/text.js", + "sha256": "54a6e8ef720b06a300b21f6c60387805dec743a64154784a609dfe8c6860776a", + "language": "JavaScript", + "lines": 121, + "truncated": false, + "block": 1, + "row": 1097 + }, + { + "path": "ServerClient_FixedDelay/node_modules/body-parser/lib/types/urlencoded.js", + "sha256": "752717d87aad57451638af2073b04eba964f348910c0bcf0070c43e732de5eb2", + "language": "JavaScript", + "lines": 284, + "truncated": false, + "block": 1, + "row": 1317 + }, + { + "path": "ServerClient_FixedDelay/node_modules/bytes/index.js", + "sha256": "0b09645f3817469ba5d8b7047a54db6dd431586a2c670ea8d8c31c7880f1ef08", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1209 + }, + { + "path": "ServerClient_FixedDelay/node_modules/component-emitter/index.js", + "sha256": "8e6ad44d4b87d2edd2abbb6cea713a7947a7c43b8cd2f759073d3a5a12d4e6a7", + "language": "JavaScript", + "lines": 175, + "truncated": false, + "block": 1, + "row": 1192 + }, + { + "path": "ServerClient_FixedDelay/node_modules/content-disposition/index.js", + "sha256": "15eb8fd0bc070ec9b43259f4f7df49dc805f1e6837f3c9e547ff0b424c482ded", + "language": "JavaScript", + "lines": 458, + "truncated": false, + "block": 1, + "row": 1435 + }, + { + "path": "ServerClient_FixedDelay/node_modules/content-type/index.js", + "sha256": "85ffe59d050974725c044a0cead644db76f4bffe823753723670244b90629c5b", + "language": "JavaScript", + "lines": 222, + "truncated": false, + "block": 1, + "row": 1288 + }, + { + "path": "ServerClient_FixedDelay/node_modules/cookie-signature/index.js", + "sha256": "8d762862020064468b4af17e561ee1ee29d9d55311a1c19d958c4ff2be912963", + "language": "JavaScript", + "lines": 51, + "truncated": false, + "block": 1, + "row": 929 + }, + { + "path": "ServerClient_FixedDelay/node_modules/cookie/index.js", + "sha256": "7b3aa39bea0be25117f6d08ed828fd04bd10b7f2d556c4cfef51fcfa76be4370", + "language": "JavaScript", + "lines": 198, + "truncated": false, + "block": 1, + "row": 1239 + }, + { + "path": "ServerClient_FixedDelay/node_modules/debug/src/debug.js", + "sha256": "d8d1c1d6c387ab67c3f28d78fd0b20b9becd69442db9d3efe110ca464b509c8a", + "language": "JavaScript", + "lines": 202, + "truncated": false, + "block": 1, + "row": 1263 + }, + { + "path": "ServerClient_FixedDelay/node_modules/debug/src/index.js", + "sha256": "9a34fedeb2d269c46ed94e6f13039eb0d16d866dd460ec66fa3acd78122fa9fe", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 595 + }, + { + "path": "ServerClient_FixedDelay/node_modules/debug/src/node.js", + "sha256": "a3e83594a4ce88997e2e4fc66bc942b17b9d736290ad62560c7f09d6d0989ad0", + "language": "JavaScript", + "lines": 248, + "truncated": false, + "block": 1, + "row": 1330 + }, + { + "path": "ServerClient_FixedDelay/node_modules/depd/index.js", + "sha256": "244dbbca14b8aa9c9b6be04912283ab704b92f11dcb9b23beb2ba81402fecc99", + "language": "JavaScript", + "lines": 522, + "truncated": false, + "block": 1, + "row": 1436 + }, + { + "path": "ServerClient_FixedDelay/node_modules/depd/lib/compat/index.js", + "sha256": "76baf83317ac81045cefb9fcc8ec0d8e47dd0cfcbadd592f480349412e161861", + "language": "JavaScript", + "lines": 79, + "truncated": false, + "block": 1, + "row": 966 + }, + { + "path": "ServerClient_FixedDelay/node_modules/destroy/index.js", + "sha256": "9d23fb0d80472356bf635b3e4fc46909914c34c930eafc7b8348d7e3653fcf0c", + "language": "JavaScript", + "lines": 75, + "truncated": false, + "block": 1, + "row": 883 + }, + { + "path": "ServerClient_FixedDelay/node_modules/ee-first/index.js", + "sha256": "29d3cccddc7148f48715bfc94eb6f7b9f9132a5ecb704b9d4b713de87e7603dd", + "language": "JavaScript", + "lines": 95, + "truncated": false, + "block": 1, + "row": 1003 + }, + { + "path": "ServerClient_FixedDelay/node_modules/encodeurl/index.js", + "sha256": "1d0a4e941c1504dcd9bc6cfbb77f7b44d93e56a29cba6f2ccebd78d501a51c16", + "language": "JavaScript", + "lines": 60, + "truncated": false, + "block": 1, + "row": 990 + }, + { + "path": "ServerClient_FixedDelay/node_modules/engine.io-parser/lib/commons.js", + "sha256": "90e87cd1e95e833ee3ad0026eee6a4ad0cb8e14fe5c240e73a11522c434ef125", + "language": "JavaScript", + "lines": 21, + "truncated": false, + "block": 1, + "row": 701 + }, + { + "path": "ServerClient_FixedDelay/node_modules/engine.io-parser/lib/decodePacket.js", + "sha256": "a6bc1fbcd18c607f6c676a65477c159da95717e75a50588e5c9210aa6dc093ca", + "language": "JavaScript", + "lines": 51, + "truncated": false, + "block": 1, + "row": 940 + }, + { + "path": "ServerClient_FixedDelay/node_modules/engine.io-parser/lib/encodePacket.js", + "sha256": "5a731b3504b9325bf15f2db502c6a50820cb12d5326bfa0e2506fa65da9d1f9e", + "language": "JavaScript", + "lines": 27, + "truncated": false, + "block": 1, + "row": 786 + }, + { + "path": "ServerClient_FixedDelay/node_modules/engine.io-parser/lib/index.js", + "sha256": "d51e0c4e6265fa3f70303c44094d0a2c08541096d5087fb885648d55ea6999d8", + "language": "JavaScript", + "lines": 42, + "truncated": false, + "block": 1, + "row": 925 + }, + { + "path": "ServerClient_FixedDelay/node_modules/engine.io/lib/engine.io.js", + "sha256": "d91490dcfdb322e77be2b9aa64a8c7efe91388ba171e8c9b6711230fe29a3648", + "language": "JavaScript", + "lines": 127, + "truncated": false, + "block": 1, + "row": 1107 + }, + { + "path": "ServerClient_FixedDelay/node_modules/engine.io/lib/parser-v3/index.js", + "sha256": "44f4410ed268fd3d33a9880e4baab68947c82ce1d40749ab91fb0bc48f58237a", + "language": "JavaScript", + "lines": 483, + "truncated": false, + "block": 1, + "row": 1440 + }, + { + "path": "ServerClient_FixedDelay/node_modules/engine.io/lib/parser-v3/utf8.js", + "sha256": "fbe7aca6729b24a15b037c3af8677e47eda9cdf39eb8ec22a603154fb5f93b98", + "language": "JavaScript", + "lines": 210, + "truncated": false, + "block": 1, + "row": 1302 + }, + { + "path": "ServerClient_FixedDelay/node_modules/engine.io/lib/server.js", + "sha256": "c9a7d32116b66035ac4fac0ec44b88c22b3010c75c5dcf7cdd531de6f290d3d8", + "language": "JavaScript", + "lines": 598, + "truncated": false, + "block": 1, + "row": 1470 + }, + { + "path": "ServerClient_FixedDelay/node_modules/engine.io/lib/socket.js", + "sha256": "13c96b51482e2730f3a31a1dced580186ae5c7aaf37f67afd53b2dd7357ed33a", + "language": "JavaScript", + "lines": 522, + "truncated": false, + "block": 1, + "row": 1452 + }, + { + "path": "ServerClient_FixedDelay/node_modules/engine.io/lib/transport.js", + "sha256": "c8186bf4c0ce41f141b378ff495be1c8d9122bd5f517eeb372ff06094576b2f8", + "language": "JavaScript", + "lines": 110, + "truncated": false, + "block": 1, + "row": 1076 + }, + { + "path": "ServerClient_FixedDelay/node_modules/engine.io/lib/transports/index.js", + "sha256": "1d4f5429eb401e0bee740a80079f3e8a3f472e4ebc3a6b1a0a365f021e5a8335", + "language": "JavaScript", + "lines": 31, + "truncated": false, + "block": 1, + "row": 690 + }, + { + "path": "ServerClient_FixedDelay/node_modules/engine.io/lib/transports/polling-jsonp.js", + "sha256": "be25b5d4bf26dc0049d109f7853a4f1166e74c5aa376fa739021f426a1a5351a", + "language": "JavaScript", + "lines": 58, + "truncated": false, + "block": 1, + "row": 979 + }, + { + "path": "ServerClient_FixedDelay/node_modules/engine.io/lib/transports/polling.js", + "sha256": "451fe4cb044468f10264bce33ebdde92db4a0cfe3fee162f068951eb1e7200e3", + "language": "JavaScript", + "lines": 393, + "truncated": false, + "block": 1, + "row": 1404 + }, + { + "path": "ServerClient_FixedDelay/node_modules/engine.io/lib/transports/websocket.js", + "sha256": "a423a3cf6f6f8f2a8ba5ddc92f4de5f62ac514ca8754d3f8bb58e87df9234e15", + "language": "JavaScript", + "lines": 116, + "truncated": false, + "block": 1, + "row": 1095 + }, + { + "path": "ServerClient_FixedDelay/node_modules/engine.io/node_modules/cookie/index.js", + "sha256": "7cfd008fe13488830adfe6953df6916a6e5350acdbd03275901bbf302affd8ea", + "language": "JavaScript", + "lines": 202, + "truncated": false, + "block": 1, + "row": 1242 + }, + { + "path": "ServerClient_FixedDelay/node_modules/engine.io/node_modules/debug/src/common.js", + "sha256": "ae6855e9f5ef6687aa8f76e69dd1854f1b99985146434daff310150083cfde02", + "language": "JavaScript", + "lines": 261, + "truncated": false, + "block": 1, + "row": 1332 + }, + { + "path": "ServerClient_FixedDelay/node_modules/engine.io/node_modules/debug/src/index.js", + "sha256": "aa127ff1752b7d9c7415c5c7bb6994d9aa722b81bcbcab4bd48316b013d23bf3", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 616 + }, + { + "path": "ServerClient_FixedDelay/node_modules/engine.io/node_modules/debug/src/node.js", + "sha256": "f237adcb52849de7c128f57e0468b52353c529a6c8341810477c0e7144359559", + "language": "JavaScript", + "lines": 263, + "truncated": false, + "block": 1, + "row": 1283 + }, + { + "path": "ServerClient_FixedDelay/node_modules/engine.io/node_modules/ms/index.js", + "sha256": "55986972f5f3c9446f876c576e1cd30fd4f04cd26527efbb5ad834637c740e4c", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1169 + }, + { + "path": "ServerClient_FixedDelay/node_modules/escape-html/index.js", + "sha256": "42a7f91883d0c5ce9292dda4e017e1f8664d34b09276d89fb6f3859c29d1ca9b", + "language": "JavaScript", + "lines": 78, + "truncated": false, + "block": 1, + "row": 956 + }, + { + "path": "ServerClient_FixedDelay/node_modules/etag/index.js", + "sha256": "a95a23b9a60726a4522b768c88ad73a7ea2c539d220068227f5510a8ee2008ae", + "language": "JavaScript", + "lines": 131, + "truncated": false, + "block": 1, + "row": 1120 + }, + { + "path": "ServerClient_FixedDelay/node_modules/express/index.js", + "sha256": "4d2f5afc192178c5b0dc418d2da5826d52a8b6998771b011aede7fdba9118140", + "language": "JavaScript", + "lines": 11, + "truncated": false, + "block": 1, + "row": 580 + }, + { + "path": "ServerClient_FixedDelay/node_modules/express/lib/application.js", + "sha256": "2ee440da0ae3bce6c3424037eda81f2ad3b5bae606393b0cc98838afe421a7e2", + "language": "JavaScript", + "lines": 644, + "truncated": false, + "block": 1, + "row": 1457 + }, + { + "path": "ServerClient_FixedDelay/node_modules/express/lib/express.js", + "sha256": "2f25585c03c3050779c8f5f00597f8653f4fb8a97448ef8ef8cb21e65ba4d15d", + "language": "JavaScript", + "lines": 116, + "truncated": false, + "block": 1, + "row": 1110 + }, + { + "path": "ServerClient_FixedDelay/node_modules/express/lib/middleware/init.js", + "sha256": "48c1d12f1494b20377fcdeec9056272eff84ed8c081e1e56dc2aea395f77d19c", + "language": "JavaScript", + "lines": 43, + "truncated": false, + "block": 1, + "row": 798 + }, + { + "path": "ServerClient_FixedDelay/node_modules/express/lib/middleware/query.js", + "sha256": "6edce3963588b42e41942900b24218e665b97df0c0b1c74090b2b934fa68ca08", + "language": "JavaScript", + "lines": 47, + "truncated": false, + "block": 1, + "row": 815 + }, + { + "path": "ServerClient_FixedDelay/node_modules/express/lib/request.js", + "sha256": "ef5c0c9e61aa1ca77f7301bcdd97bc5151ea435a94928d2b32d4f522e9362f25", + "language": "JavaScript", + "lines": 525, + "truncated": false, + "block": 1, + "row": 1449 + }, + { + "path": "ServerClient_FixedDelay/node_modules/express/lib/response.js", + "sha256": "76011a43423d015fa15091989e5aeb33bbe6406e39a4d67d4a70291abbdc7c0a", + "language": "JavaScript", + "lines": 1142, + "truncated": false, + "block": 1, + "row": 1511 + }, + { + "path": "ServerClient_FixedDelay/node_modules/express/lib/router/index.js", + "sha256": "523e4d1c5ae75942782c859a615bc5a0736f7407eec4017c80d9836fbee53632", + "language": "JavaScript", + "lines": 662, + "truncated": false, + "block": 1, + "row": 1461 + }, + { + "path": "ServerClient_FixedDelay/node_modules/express/lib/router/layer.js", + "sha256": "c90709dcba8d9a6cfd1f2b4ef6d7a22d833e317f0c876d884342cee5a96f8a02", + "language": "JavaScript", + "lines": 181, + "truncated": false, + "block": 1, + "row": 1193 + }, + { + "path": "ServerClient_FixedDelay/node_modules/express/lib/router/route.js", + "sha256": "955489d45ded1b7e0f26b01ac6a1dc0e017766ec920098234ec80584598274c4", + "language": "JavaScript", + "lines": 216, + "truncated": false, + "block": 1, + "row": 1245 + }, + { + "path": "ServerClient_FixedDelay/node_modules/express/lib/utils.js", + "sha256": "ed228a1664da0df1ce485d85b2770c33bd50ae81796b1ac9568532a3a9fa6aed", + "language": "JavaScript", + "lines": 306, + "truncated": false, + "block": 1, + "row": 1326 + }, + { + "path": "ServerClient_FixedDelay/node_modules/express/lib/view.js", + "sha256": "78152ed5428dd5357cb4858afc499fbf46c300cc000b24e145a234f69dbfa141", + "language": "JavaScript", + "lines": 182, + "truncated": false, + "block": 1, + "row": 1197 + }, + { + "path": "ServerClient_FixedDelay/node_modules/file-uri-to-path/index.js", + "sha256": "e62293e871bdd5a7449ff3c7956c9536ec1d2ea7369461de77322b5256bb93e7", + "language": "JavaScript", + "lines": 66, + "truncated": false, + "block": 1, + "row": 1010 + }, + { + "path": "ServerClient_FixedDelay/node_modules/finalhandler/index.js", + "sha256": "e1e178afccce64f96a8d0fb72030f636ecf9c2b8a5588ef9b2a72cb30d2ab20c", + "language": "JavaScript", + "lines": 331, + "truncated": false, + "block": 1, + "row": 1350 + }, + { + "path": "ServerClient_FixedDelay/node_modules/forwarded/index.js", + "sha256": "fa9e9b3f81a6de8848e446678ad4f86218e3c683d8086a285b9d8a9f0963f2c3", + "language": "JavaScript", + "lines": 76, + "truncated": false, + "block": 1, + "row": 955 + }, + { + "path": "ServerClient_FixedDelay/node_modules/fresh/index.js", + "sha256": "85b46ce10c4fba71fb41666586572277f626bbc698266026372941b5267bfb60", + "language": "JavaScript", + "lines": 137, + "truncated": false, + "block": 1, + "row": 1151 + }, + { + "path": "ServerClient_FixedDelay/node_modules/http-errors/index.js", + "sha256": "045acbd1e3cfb85728771480bf748ffd02217713826bf1226b2098f1a22742cc", + "language": "JavaScript", + "lines": 266, + "truncated": false, + "block": 1, + "row": 1322 + }, + { + "path": "ServerClient_FixedDelay/node_modules/iconv-lite/lib/bom-handling.js", + "sha256": "c230d25d8e7fbb50960c634b636b71327c409e9a77e67fe9446b566bdcea362d", + "language": "JavaScript", + "lines": 52, + "truncated": false, + "block": 1, + "row": 900 + }, + { + "path": "ServerClient_FixedDelay/node_modules/iconv-lite/lib/extend-node.js", + "sha256": "7b86aebd7175d940c50f60eac1981490962855d9723bf971981ddd703ba6af43", + "language": "JavaScript", + "lines": 217, + "truncated": false, + "block": 1, + "row": 1405 + }, + { + "path": "ServerClient_FixedDelay/node_modules/iconv-lite/lib/index.js", + "sha256": "77d20e2fd5bcd9e324fb6cfdb909cd06fdaf6a91769adffcf4d7c4c066cce4c3", + "language": "JavaScript", + "lines": 153, + "truncated": false, + "block": 1, + "row": 1301 + }, + { + "path": "ServerClient_FixedDelay/node_modules/iconv-lite/lib/streams.js", + "sha256": "25a423eaf41f8dc6bc40cb28189a24e2d63b990ed72c824940bed55d0264ea6d", + "language": "JavaScript", + "lines": 121, + "truncated": false, + "block": 1, + "row": 1201 + }, + { + "path": "ServerClient_FixedDelay/node_modules/inherits/inherits.js", + "sha256": "7af9a5f76c00f72bed44b83824a8acd67febcfd3d34fd293c20c35aa7e6657f6", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 1, + "row": 575 + }, + { + "path": "ServerClient_FixedDelay/node_modules/ipaddr.js/lib/ipaddr.js", + "sha256": "d82a21a6872925dfe73e9aa10e9eb47baba398987560e36db107f44d92f069b0", + "language": "JavaScript", + "lines": 673, + "truncated": false, + "block": 1, + "row": 1482 + }, + { + "path": "ServerClient_FixedDelay/node_modules/media-typer/index.js", + "sha256": "27af6de782c53c57c4a8f111a81cd26b8d68c896c2dcd83e27da4c73234ce16b", + "language": "JavaScript", + "lines": 270, + "truncated": false, + "block": 1, + "row": 1345 + }, + { + "path": "ServerClient_FixedDelay/node_modules/merge-descriptors/index.js", + "sha256": "88564234b9eeb2f0fe2cc5d03f617a97eb4802f126bdd21aa223c3c87c02531c", + "language": "JavaScript", + "lines": 60, + "truncated": false, + "block": 1, + "row": 926 + }, + { + "path": "ServerClient_FixedDelay/node_modules/methods/index.js", + "sha256": "670576bfe96eb9e4fecd1e8c19f491a68b9bfd7da0e7564cd0a3c2ebd3839180", + "language": "JavaScript", + "lines": 69, + "truncated": false, + "block": 1, + "row": 882 + }, + { + "path": "ServerClient_FixedDelay/node_modules/mime-db/index.js", + "sha256": "a2532ace32711ae90deb4ae4654c5bc4e56f0a1e21bdd15ba26334bf723dfb09", + "language": "JavaScript", + "lines": 11, + "truncated": false, + "block": 1, + "row": 559 + }, + { + "path": "ServerClient_FixedDelay/node_modules/mime-types/index.js", + "sha256": "8cfccaac306beb650d60c7f069ae0f4b39d648f1e3914696b18c133ab33e6419", + "language": "JavaScript", + "lines": 188, + "truncated": false, + "block": 1, + "row": 1218 + }, + { + "path": "ServerClient_FixedDelay/node_modules/mime/mime.js", + "sha256": "a121a0b9e780e9ae349a26227a0d25c33ebac2d52a85aae5affa84ba0f53f16c", + "language": "JavaScript", + "lines": 108, + "truncated": false, + "block": 1, + "row": 1153 + }, + { + "path": "ServerClient_FixedDelay/node_modules/ms/index.js", + "sha256": "4bd92209cb9dacf3e3773e725acb7aaec43ea9e78540324e4d0f73e5ce9adef7", + "language": "JavaScript", + "lines": 152, + "truncated": false, + "block": 1, + "row": 1156 + }, + { + "path": "ServerClient_FixedDelay/node_modules/negotiator/index.js", + "sha256": "6019e096fc7bc12e4811f0f363e57b7cd60f08b8ea995e15aa33614d99332377", + "language": "JavaScript", + "lines": 124, + "truncated": false, + "block": 1, + "row": 1199 + }, + { + "path": "ServerClient_FixedDelay/node_modules/negotiator/lib/encoding.js", + "sha256": "35421dc78d3c1b608922427bbd6e524518168621ff1a44919fc591ca297e813c", + "language": "JavaScript", + "lines": 184, + "truncated": false, + "block": 1, + "row": 1210 + }, + { + "path": "ServerClient_FixedDelay/node_modules/on-finished/index.js", + "sha256": "b0314432e091ecc1f7095ac5f49c6705d5fb559b0c3fd22e2d750ef59e76fa24", + "language": "JavaScript", + "lines": 196, + "truncated": false, + "block": 1, + "row": 1219 + }, + { + "path": "ServerClient_FixedDelay/node_modules/parseurl/index.js", + "sha256": "811223d4a19492ccc642384dc84f0af4ad935557dfe8f63750d7ffd673e40f17", + "language": "JavaScript", + "lines": 158, + "truncated": false, + "block": 1, + "row": 1162 + }, + { + "path": "ServerClient_FixedDelay/node_modules/path-to-regexp/index.js", + "sha256": "c6fca7c07d17e676c51896b785576a118ccffa934959ddcee7ed106d3f8d4d01", + "language": "JavaScript", + "lines": 129, + "truncated": false, + "block": 1, + "row": 1198 + }, + { + "path": "ServerClient_FixedDelay/node_modules/proxy-addr/index.js", + "sha256": "c586f959f09961edc6e261d9404455fce40998a221f71d44833bb4b12796c33c", + "language": "JavaScript", + "lines": 327, + "truncated": false, + "block": 1, + "row": 1328 + }, + { + "path": "ServerClient_FixedDelay/node_modules/qs/lib/formats.js", + "sha256": "fa46703aec014a01b57df0e0d3d42ff4d773cccc58e5fabd292ac61b25f731f6", + "language": "JavaScript", + "lines": 18, + "truncated": false, + "block": 1, + "row": 655 + }, + { + "path": "ServerClient_FixedDelay/node_modules/qs/lib/index.js", + "sha256": "8f4e02eef6ccc43f2b7448c18ae209281c8e9af9807cad491df67450e3817a95", + "language": "JavaScript", + "lines": 11, + "truncated": false, + "block": 1, + "row": 578 + }, + { + "path": "ServerClient_FixedDelay/node_modules/qs/lib/parse.js", + "sha256": "cf791be1811bd18d699567fe7ca6aa0961ae237644a41883765eab2601ef58f0", + "language": "JavaScript", + "lines": 242, + "truncated": false, + "block": 1, + "row": 1401 + }, + { + "path": "ServerClient_FixedDelay/node_modules/qs/lib/stringify.js", + "sha256": "7cbb020ea4d2e31dcbfb07d2ca22fd80397579eebcffe02148cff7745fd93de3", + "language": "JavaScript", + "lines": 269, + "truncated": false, + "block": 1, + "row": 1394 + }, + { + "path": "ServerClient_FixedDelay/node_modules/qs/lib/utils.js", + "sha256": "d6d87593414ca65949b037e91e9851314f6d1b043b9fc679787a3d6dd6db4375", + "language": "JavaScript", + "lines": 230, + "truncated": false, + "block": 1, + "row": 1341 + }, + { + "path": "ServerClient_FixedDelay/node_modules/range-parser/index.js", + "sha256": "38786526d000475300728db07455aa21d1e37b0f24e48fbc4cb30136ae30b07b", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1165 + }, + { + "path": "ServerClient_FixedDelay/node_modules/raw-body/index.js", + "sha256": "ce1d9e7768f499df276dcc57945ca0c55201aa92f982889e868e25eec8faad50", + "language": "JavaScript", + "lines": 286, + "truncated": false, + "block": 1, + "row": 1335 + }, + { + "path": "ServerClient_FixedDelay/node_modules/safe-buffer/index.js", + "sha256": "d58af21cb0518864d0c505742d1af71e5b5e1f142f4c0f27353aa0f431a616d4", + "language": "JavaScript", + "lines": 62, + "truncated": false, + "block": 1, + "row": 982 + }, + { + "path": "ServerClient_FixedDelay/node_modules/safer-buffer/safer.js", + "sha256": "37f9716144105051ab302f6a0c30a52ff5de7269b9e1173ac22be798fc11ccad", + "language": "JavaScript", + "lines": 77, + "truncated": false, + "block": 1, + "row": 1073 + }, + { + "path": "ServerClient_FixedDelay/node_modules/send/index.js", + "sha256": "f4145dfc482fba92177bd81092fdf6ebe74c919ea3f2a26713bfeb2a1c065c40", + "language": "JavaScript", + "lines": 1129, + "truncated": false, + "block": 1, + "row": 1498 + }, + { + "path": "ServerClient_FixedDelay/node_modules/send/node_modules/ms/index.js", + "sha256": "7c9083207b648e648c4d076e7bd7d85af73daae58738199eb8c20a465dfdcd19", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1171 + }, + { + "path": "ServerClient_FixedDelay/node_modules/serialport/lib/index.js", + "sha256": "dcab9f772274dd761ec1bff8ffb8372850f0586b2695df3ceb6280fff702c4a5", + "language": "JavaScript", + "lines": 15, + "truncated": false, + "block": 1, + "row": 606 + }, + { + "path": "ServerClient_FixedDelay/node_modules/serialport/lib/parsers.js", + "sha256": "3d061effea577e0ad07e248f43b8c2d074f83e00265175163c2ba3b6ac95e6fa", + "language": "JavaScript", + "lines": 9, + "truncated": false, + "block": 1, + "row": 658 + }, + { + "path": "ServerClient_FixedDelay/node_modules/serve-static/index.js", + "sha256": "768d6407e86ba974e7b8a0e79625e76a932b1f2503207c87f871fcf98be21b1e", + "language": "JavaScript", + "lines": 210, + "truncated": false, + "block": 1, + "row": 1277 + }, + { + "path": "ServerClient_FixedDelay/node_modules/setprototypeof/index.js", + "sha256": "62193f6768a098bc245f88a86a955d50643f68537d181945f6eec5792e4a294b", + "language": "JavaScript", + "lines": 17, + "truncated": false, + "block": 1, + "row": 651 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io-adapter/dist/index.d.ts", + "sha256": "426dfc3f738617c403c8019cd9831958928dbd6f4dbeb66f17f24b0145093baf", + "language": "TypeScript", + "lines": 112, + "truncated": false, + "block": 1, + "row": 12116 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io-adapter/dist/index.js", + "sha256": "a5f42b0d62f0a7189a034d783995db7e4f7d71e52f66da3f2a4fc7032e5c5560", + "language": "JavaScript", + "lines": 218, + "truncated": false, + "block": 1, + "row": 1336 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io-parser/dist/binary.js", + "sha256": "b455bebe40cab935b7d13c85e3ed04b7235c244aaace8284aa42972021de6c34", + "language": "JavaScript", + "lines": 80, + "truncated": false, + "block": 1, + "row": 1146 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io-parser/dist/index.d.ts", + "sha256": "6ce9c4c7d976960a7f14dfe40e26c357bcab9405eb2eea38f79760ed4f323512", + "language": "TypeScript", + "lines": 72, + "truncated": false, + "block": 1, + "row": 12084 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io-parser/dist/index.js", + "sha256": "2971c85683dbe8a8a2e2b8c5eb5b5771f1fc30d69700ac55b167003a55b7c282", + "language": "JavaScript", + "lines": 280, + "truncated": false, + "block": 1, + "row": 1411 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io-parser/dist/is-binary.js", + "sha256": "5f6c79dc87d7fa32cb4165d02313018c605881e2ff26380d4742a4fd3c0161a2", + "language": "JavaScript", + "lines": 55, + "truncated": false, + "block": 1, + "row": 1017 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io-parser/node_modules/debug/src/common.js", + "sha256": "ae6855e9f5ef6687aa8f76e69dd1854f1b99985146434daff310150083cfde02", + "language": "JavaScript", + "lines": 261, + "truncated": false, + "block": 1, + "row": 1332 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io-parser/node_modules/debug/src/index.js", + "sha256": "aa127ff1752b7d9c7415c5c7bb6994d9aa722b81bcbcab4bd48316b013d23bf3", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 616 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io-parser/node_modules/debug/src/node.js", + "sha256": "f237adcb52849de7c128f57e0468b52353c529a6c8341810477c0e7144359559", + "language": "JavaScript", + "lines": 263, + "truncated": false, + "block": 1, + "row": 1283 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io-parser/node_modules/ms/index.js", + "sha256": "55986972f5f3c9446f876c576e1cd30fd4f04cd26527efbb5ad834637c740e4c", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1169 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io/client-dist/socket.io.js", + "sha256": "9ba7bcdd5593ca3ee030f699f5d3643349b4c9661ac509f683b39618b2966a68", + "language": "JavaScript", + "lines": 6046, + "truncated": false, + "block": 1, + "row": 1552 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io/dist/broadcast-operator.d.ts", + "sha256": "7310329579c7cee56637f843669ed4a2448b7731eec33ce2be9e8b5effa9b0e6", + "language": "TypeScript", + "lines": 144, + "truncated": false, + "block": 1, + "row": 12130 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io/dist/broadcast-operator.js", + "sha256": "7693fa52e466ba35f889f068d44c539c4328346e24a900c4fbb87f897a9b3555", + "language": "JavaScript", + "lines": 233, + "truncated": false, + "block": 1, + "row": 1356 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io/dist/client.d.ts", + "sha256": "cea12c41a0b50f826fd57bd459af98a96fe4cd12d905d1567e03c2e90cc9466d", + "language": "TypeScript", + "lines": 110, + "truncated": false, + "block": 1, + "row": 12105 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io/dist/client.js", + "sha256": "b9b218e47da4451f7d06ad37a8347ce8fe81585e0018aa6bcc7401145a7e0a5d", + "language": "JavaScript", + "lines": 266, + "truncated": false, + "block": 1, + "row": 1380 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io/dist/index.d.ts", + "sha256": "62309f23ab3a0cc42ffe8b433b12d80e8e1acc8c84107d5aa1659a7d20bb7000", + "language": "TypeScript", + "lines": 403, + "truncated": false, + "block": 1, + "row": 12169 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io/dist/index.js", + "sha256": "22f685cd1454a6aafb6551386e0645440c578932406d89bff72ede1070298111", + "language": "JavaScript", + "lines": 512, + "truncated": false, + "block": 1, + "row": 1469 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io/dist/namespace.d.ts", + "sha256": "9ae43c672bbce5b194cef8607c953eec1927b01af41c325f1bdd5f26f3834ea0", + "language": "TypeScript", + "lines": 170, + "truncated": false, + "block": 1, + "row": 12136 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io/dist/namespace.js", + "sha256": "f729fb3acff0f9a609859f5c907b312bac15cde81cdf3ee478ffcd88adf445c4", + "language": "JavaScript", + "lines": 265, + "truncated": false, + "block": 1, + "row": 1375 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io/dist/parent-namespace.js", + "sha256": "1b41cf245be7d3dd36b47870ae4a99ee6e32c312a3909af15285e44faa08a0a4", + "language": "JavaScript", + "lines": 39, + "truncated": false, + "block": 1, + "row": 951 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io/dist/socket.d.ts", + "sha256": "906f138e88053825be6a1b63f80506773fa1355e8e1427cd9aea733c8f230323", + "language": "TypeScript", + "lines": 346, + "truncated": false, + "block": 1, + "row": 12160 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io/dist/socket.js", + "sha256": "c6525b1c14c654982552be1d2c618a5f4b7c05f688109765640a076bccb933ef", + "language": "JavaScript", + "lines": 557, + "truncated": false, + "block": 1, + "row": 1468 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io/dist/typed-events.d.ts", + "sha256": "e34c13b2d9d15cb284619be06ea9645827f56b89eb3f7e8b65ea854a78d3f620", + "language": "TypeScript", + "lines": 110, + "truncated": false, + "block": 1, + "row": 12135 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io/dist/typed-events.js", + "sha256": "b8d8c4c0e326eb8c8a337111156331cc1098c29de36cfa82a327dab8eab672c4", + "language": "JavaScript", + "lines": 81, + "truncated": false, + "block": 1, + "row": 1133 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io/node_modules/debug/src/common.js", + "sha256": "ae6855e9f5ef6687aa8f76e69dd1854f1b99985146434daff310150083cfde02", + "language": "JavaScript", + "lines": 261, + "truncated": false, + "block": 1, + "row": 1332 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io/node_modules/debug/src/index.js", + "sha256": "aa127ff1752b7d9c7415c5c7bb6994d9aa722b81bcbcab4bd48316b013d23bf3", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 616 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io/node_modules/debug/src/node.js", + "sha256": "f237adcb52849de7c128f57e0468b52353c529a6c8341810477c0e7144359559", + "language": "JavaScript", + "lines": 263, + "truncated": false, + "block": 1, + "row": 1283 + }, + { + "path": "ServerClient_FixedDelay/node_modules/socket.io/node_modules/ms/index.js", + "sha256": "55986972f5f3c9446f876c576e1cd30fd4f04cd26527efbb5ad834637c740e4c", + "language": "JavaScript", + "lines": 162, + "truncated": false, + "block": 1, + "row": 1169 + }, + { + "path": "ServerClient_FixedDelay/node_modules/statuses/index.js", + "sha256": "4f8b0e8e9e9cff773ba540daf8a065d9b19b2ee1d108acc0172614f81b11ef0b", + "language": "JavaScript", + "lines": 113, + "truncated": false, + "block": 1, + "row": 1065 + }, + { + "path": "ServerClient_FixedDelay/node_modules/toidentifier/index.js", + "sha256": "6df7c8b218f33abc33563a33de06b4bbb1a43a6232b4c31cb01c55c38ed1cba8", + "language": "JavaScript", + "lines": 30, + "truncated": false, + "block": 1, + "row": 693 + }, + { + "path": "ServerClient_FixedDelay/node_modules/type-is/index.js", + "sha256": "4a94338bd746c6b17dd8681f21124f84ed2cdd4a16022849d28900d5e568642a", + "language": "JavaScript", + "lines": 266, + "truncated": false, + "block": 1, + "row": 1310 + }, + { + "path": "ServerClient_FixedDelay/node_modules/unpipe/index.js", + "sha256": "69cd57b5cdd08c42410ebc0d92235e334f1fb985e6eb2dcfb1c692db674411bd", + "language": "JavaScript", + "lines": 69, + "truncated": false, + "block": 1, + "row": 901 + }, + { + "path": "ServerClient_FixedDelay/node_modules/utils-merge/index.js", + "sha256": "ec62860d6445addffd574f640451ea92e0558b6df793b2e0f1c7175fc2ff6366", + "language": "JavaScript", + "lines": 23, + "truncated": false, + "block": 1, + "row": 648 + }, + { + "path": "ServerClient_FixedDelay/node_modules/vary/index.js", + "sha256": "8e40311960636d40473c57e335bbca115036766bf150df296b941256432ab410", + "language": "JavaScript", + "lines": 149, + "truncated": false, + "block": 1, + "row": 1166 + }, + { + "path": "ServerClient_FixedDelay/node_modules/ws/index.js", + "sha256": "c2b0c9905540a51acb276523bb024ef3c11bd118b03a90d92962080ebd07fec9", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 610 + }, + { + "path": "ServerClient_FixedDelay/node_modules/ws/lib/buffer-util.js", + "sha256": "da2088dcfa847be2b26a0c4fd46480e2a787b3120bcaceb98555654bbba53631", + "language": "JavaScript", + "lines": 129, + "truncated": false, + "block": 1, + "row": 1172 + }, + { + "path": "ServerClient_FixedDelay/node_modules/ws/lib/constants.js", + "sha256": "2c2e8f6abbb7c2314d5736ef0a8d11f04ddc3cf4faf1c710df5d75c4170e937e", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 598 + }, + { + "path": "ServerClient_FixedDelay/node_modules/ws/lib/event-target.js", + "sha256": "6bad3e83c4a8f113cfc40ef2757ecbc727e67c5e16ea8447cdc6e12af2b1554a", + "language": "JavaScript", + "lines": 184, + "truncated": false, + "block": 1, + "row": 1264 + }, + { + "path": "ServerClient_FixedDelay/node_modules/ws/lib/extension.js", + "sha256": "13b228a92d2dad9d1bffd09faaae6b64bfc1f713dd966010ad479a901c243a86", + "language": "JavaScript", + "lines": 223, + "truncated": false, + "block": 1, + "row": 1361 + }, + { + "path": "ServerClient_FixedDelay/node_modules/ws/lib/limiter.js", + "sha256": "e0469d4b83f6ba764b15f80e1766b75c136fbff68f048f4c050f0b1c7f065f69", + "language": "JavaScript", + "lines": 55, + "truncated": false, + "block": 1, + "row": 877 + }, + { + "path": "ServerClient_FixedDelay/node_modules/ws/lib/permessage-deflate.js", + "sha256": "433cd5543ca3f3423c0eaf27b4b1fe09211276bf16090a839d73f5fe809727ba", + "language": "JavaScript", + "lines": 517, + "truncated": false, + "block": 1, + "row": 1456 + }, + { + "path": "ServerClient_FixedDelay/node_modules/ws/lib/receiver.js", + "sha256": "f7a6fda3723be1b60e15fc877f08601cfbc18eb8dbbe79983c7453f902742adc", + "language": "JavaScript", + "lines": 507, + "truncated": false, + "block": 1, + "row": 1448 + }, + { + "path": "ServerClient_FixedDelay/node_modules/ws/lib/sender.js", + "sha256": "3f7526f281342bbac168e366cf8018ed919f9288db3b52f36f69d637f20bd691", + "language": "JavaScript", + "lines": 405, + "truncated": false, + "block": 1, + "row": 1437 + }, + { + "path": "ServerClient_FixedDelay/node_modules/ws/lib/stream.js", + "sha256": "503e6773f58a9fd05ac87be76b8fa88848dbc9800f09154f5191a6768bb687f8", + "language": "JavaScript", + "lines": 165, + "truncated": false, + "block": 1, + "row": 1233 + }, + { + "path": "ServerClient_FixedDelay/node_modules/ws/lib/validation.js", + "sha256": "793ee08de7ae2becd336189b6714087c262bfde80af862aa3fd197dce2369946", + "language": "JavaScript", + "lines": 104, + "truncated": false, + "block": 1, + "row": 1127 + }, + { + "path": "ServerClient_FixedDelay/node_modules/ws/lib/websocket-server.js", + "sha256": "65019eca81967a127eb139d0943f1799f915f19d2a58766e887d0708dbe5c2f5", + "language": "JavaScript", + "lines": 406, + "truncated": false, + "block": 1, + "row": 1444 + }, + { + "path": "ServerClient_FixedDelay/node_modules/ws/lib/websocket.js", + "sha256": "b5a6fa82d0ed96b3a7176216b72310239b9cb54217bb9ffb42a01f582ef69522", + "language": "JavaScript", + "lines": 943, + "truncated": false, + "block": 1, + "row": 1507 + }, + { + "path": "ServerClient_FixedDelay/public/Abubu/Abubu.js", + "sha256": "656b8e0757a368fb7e61150b3d0dd809b2d8380ae573f55a5f45efdb6b0762cd", + "language": "JavaScript", + "lines": 6073, + "truncated": true, + "block": 1, + "row": 1559 + }, + { + "path": "ServerClient_FixedDelay/public/Abubu/libs/dat.gui.js", + "sha256": "6d08eaf68fb88bd177c28a308e2f41dd24de2b79bb69a20a7a95c6935112aef0", + "language": "JavaScript", + "lines": 4292, + "truncated": false, + "block": 1, + "row": 1553 + }, + { + "path": "ServerClient_FixedDelay/public/Abubu/libs/gl-matrix.js", + "sha256": "c58f94f9c7f493186e8cc2ff6c742cfa96da2053d2e18c7da951514105c386ff", + "language": "JavaScript", + "lines": 6888, + "truncated": false, + "block": 1, + "row": 1550 + }, + { + "path": "ServerClient_FixedDelay/public/app/main.js", + "sha256": "5cb0a758da38434f1740a83530e0629c4ab20aac48a8c37dddc415b1439132ca", + "language": "JavaScript", + "lines": 53, + "truncated": false, + "block": 1, + "row": 963 + }, + { + "path": "ServerClient_FixedDelay/public/libs/image.js", + "sha256": "fa94cca1a5daac2b20be0112b0bbb9d153df0eef77b3728480ab1320760660b4", + "language": "JavaScript", + "lines": 25, + "truncated": false, + "block": 1, + "row": 809 + }, + { + "path": "ServerClient_FixedDelay/public/libs/jquery-3.4.1.min.js", + "sha256": "0925e8ad7bd971391a8b1e98be8e87a6971919eb5b60c196485941c3c1df089a", + "language": "JavaScript", + "lines": 2, + "truncated": false, + "block": 1, + "row": 1543 + }, + { + "path": "ServerClient_FixedDelay/public/libs/shader.js", + "sha256": "18a0f81c563bc7bd2c9fa13faba51fd5ec0efa66a3c973ff0f99c38ec7737aba", + "language": "JavaScript", + "lines": 91, + "truncated": false, + "block": 1, + "row": 1195 + }, + { + "path": "ServerClient_FixedDelay/public/libs/text.js", + "sha256": "8c31bc55a5c70471e6307c73fcf5f764764eaf79778511ced360b5db2617ed4f", + "language": "JavaScript", + "lines": 408, + "truncated": false, + "block": 1, + "row": 1474 + }, + { + "path": "ServerClient_FixedDelay/server.js", + "sha256": "4e39c62882fb815c8fe1931171e604470f3892ea5b517da69f26f3931a6514d4", + "language": "JavaScript", + "lines": 143, + "truncated": false, + "block": 1, + "row": 1235 + }, + { + "path": "cpp_Camera-Code/Grab.cpp", + "sha256": "fe8f684457f51193d0cdf3c17b5bfb3f740966699c5476d59d30efa087ac64c6", + "language": "C++", + "lines": 1117, + "truncated": false, + "block": 1, + "row": 286 + } + ] +} \ No newline at end of file diff --git a/manifests/05/github.com__tferr__scripts.json b/manifests/05/github.com__tferr__scripts.json new file mode 100644 index 0000000000000000000000000000000000000000..a92cbd054337305668662494372f69c44da60f12 --- /dev/null +++ b/manifests/05/github.com__tferr__scripts.json @@ -0,0 +1,381 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/tferr/scripts", + "url": "https://github.com/tferr/Scripts/tree/1.1.6", + "host": "github.com", + "commit": "dc0801d6288fb63d5ddabc7c552b86b5d74459d0", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE.txt", + "redistribution": "yes", + "files": [ + { + "path": ".travis/build.sh", + "sha256": "ddc7de6da963ee3ca38113eb9d9b09ffda8c6070633e77190de1fed60e9af906", + "language": "Shell", + "lines": 3, + "truncated": false, + "block": 1, + "row": 11120 + }, + { + "path": "BAR/src/main/java/bar/BAR.java", + "sha256": "354fb40d39769910267c7cd64f4d6f52f44d1b0eb24550403841141fedf2a402", + "language": "Java", + "lines": 57, + "truncated": false, + "block": 1, + "row": 496 + }, + { + "path": "BAR/src/main/java/bar/BARService.java", + "sha256": "637f1a8558dbbc5e8d0153f5af9b8a0c0256e8717361dee65c2fb4b3755ec411", + "language": "Java", + "lines": 27, + "truncated": false, + "block": 1, + "row": 493 + }, + { + "path": "BAR/src/main/java/bar/DefaultGCD.java", + "sha256": "8102306bd7b2a66a7b9bb593eb9df3055bc79818373ff2e1febac5ccfa8162b7", + "language": "Java", + "lines": 35, + "truncated": false, + "block": 1, + "row": 494 + }, + { + "path": "BAR/src/main/java/bar/FileDrop.java", + "sha256": "7321c15409782fbe9e6e9ba1646601d5772c239ceb42cf520f83ccf0d1efeae4", + "language": "Java", + "lines": 956, + "truncated": false, + "block": 1, + "row": 510 + }, + { + "path": "BAR/src/main/java/bar/Installer.java", + "sha256": "819c2890fc0c4ca7aceebe0294cb99127f8d347b972c58a242dc9e5003d0bb51", + "language": "Java", + "lines": 188, + "truncated": false, + "block": 1, + "row": 503 + }, + { + "path": "BAR/src/main/java/bar/PlotUtils.java", + "sha256": "d395e96ec9798edb6b35717a3c73cf3ebc265afa21ee8f6afe009ba7a3066ba9", + "language": "Java", + "lines": 221, + "truncated": false, + "block": 1, + "row": 504 + }, + { + "path": "BAR/src/main/java/bar/Runner.java", + "sha256": "74c36a374964f6dc180d5f42f7b61d39412aacdd4ad2727f9e54f3128b48b5db", + "language": "Java", + "lines": 351, + "truncated": false, + "block": 1, + "row": 506 + }, + { + "path": "BAR/src/main/java/bar/Utils.java", + "sha256": "712107d4c3c1611d90f608ecc6207cbaeb05a2f557103ed933de548c7bced9b7", + "language": "Java", + "lines": 1211, + "truncated": false, + "block": 1, + "row": 511 + }, + { + "path": "BAR/src/main/java/bar/gui/GuiUtils.java", + "sha256": "033138475c7d89352c28d87f860ed9588c1e31289c819487037501eac0c92c54", + "language": "Java", + "lines": 110, + "truncated": false, + "block": 1, + "row": 499 + }, + { + "path": "BAR/src/main/java/bar/plugin/Commander.java", + "sha256": "ddc42a71ca78d835ec1329320bc1b392794ec156bda3107a220f3028cca0122b", + "language": "Java", + "lines": 2518, + "truncated": false, + "block": 1, + "row": 512 + }, + { + "path": "BAR/src/main/java/bar/plugin/Help.java", + "sha256": "9ccda8d2f84e197b5a9a476825f12667d39f67ecaf9dfb217d2f4a8a68f73b26", + "language": "Java", + "lines": 342, + "truncated": false, + "block": 1, + "row": 507 + }, + { + "path": "BAR/src/main/java/bar/plugin/InteractivePlotter.java", + "sha256": "06319989c540a5c780a3841f906a9ad093fac33bd83c09395acd6af9865fb66e", + "language": "Java", + "lines": 861, + "truncated": false, + "block": 1, + "row": 509 + }, + { + "path": "BAR/src/main/java/bar/plugin/MDReader.java", + "sha256": "17964086b414cd5b181ed05f5b538e38c11f5e0a504776dc5863a3157e361764", + "language": "Java", + "lines": 135, + "truncated": false, + "block": 1, + "row": 502 + }, + { + "path": "BAR/src/main/java/bar/plugin/ShenCastan.java", + "sha256": "dda036f30a275892ddfe107f5fe3feadef21ee23140889d5eadb3db92922d86b", + "language": "Java", + "lines": 314, + "truncated": false, + "block": 1, + "row": 505 + }, + { + "path": "BAR/src/main/java/bar/plugin/SnippetCreator.java", + "sha256": "173e290d2b5b1c13299deca052bdbf3641146d19dade807aac1473b41e56c0d7", + "language": "Java", + "lines": 424, + "truncated": false, + "block": 1, + "row": 508 + }, + { + "path": "BAR/src/main/java/bar/plugin/Tutorials.java", + "sha256": "b2d9aa3fac1ecb51941b585ed7c5020b5d641a63fb28d1e78afcc7e739ebd98a", + "language": "Java", + "lines": 138, + "truncated": false, + "block": 1, + "row": 501 + }, + { + "path": "BAR/src/main/resources/boilerplate/javascript.js", + "sha256": "a46218585cc7cb565c00a97072974f83f204a4470934002888ce7ced5f2f3d04", + "language": "JavaScript", + "lines": 29, + "truncated": false, + "block": 1, + "row": 712 + }, + { + "path": "BAR/src/main/resources/boilerplate/python.py", + "sha256": "b7c72d09c8e649e893c86c212b4ef870025a452ca19bd2a8bb537580920f62b4", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 1, + "row": 5435 + }, + { + "path": "BAR/src/main/resources/lib/BARlib.js", + "sha256": "ee406fe80c120316adbaa4c01d3ccf9d817510fb7966384cb0786a63ca14e28c", + "language": "JavaScript", + "lines": 74, + "truncated": false, + "block": 1, + "row": 1062 + }, + { + "path": "BAR/src/main/resources/lib/BARlib.py", + "sha256": "425ced6c8ce6333f83b201dc78b81a27b73ea59bf53522db524ef05246f3ee12", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 1, + "row": 6454 + }, + { + "path": "BAR/src/main/resources/script_templates/BAR/Batch_Processors/Process_Folder_PY.py", + "sha256": "d173c34795f0e492b3232f2f2c8ed7b0ab99c22411a3a5ae79389a680ba232ff", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 1, + "row": 7006 + }, + { + "path": "BAR/src/main/resources/script_templates/BAR/External_Ops/GCD.py", + "sha256": "ad87f9a62e7dd9446d000e60bae60788c103ec523d45d00cefb2d637b7479c9b", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 1, + "row": 5404 + }, + { + "path": "BAR/src/main/resources/script_templates/BAR/Tracking_Analysis/Extract_Bouts_From_Tracks.py", + "sha256": "fcca6c2452a679717267c7c96b5e4e3c04b2240a7ae91c4934933c771dfbb517", + "language": "Python", + "lines": 436, + "truncated": false, + "block": 1, + "row": 9257 + }, + { + "path": "BAR/src/main/resources/script_templates/BAR/Tracking_Analysis/Tag_and_Onset_MtrackJ_paths.py", + "sha256": "1da2f1101636fe98382f23263f26dc3a7e6a868a935fc55cc32194d82ee33c19", + "language": "Python", + "lines": 245, + "truncated": false, + "block": 1, + "row": 8254 + }, + { + "path": "BAR/src/main/resources/scripts/BAR/Analysis/LoG-DoG_Spot_Counter.py", + "sha256": "d58ad9a0eba7bf2e05eafb3e075b4e64a39011db7b6c09317f29f352a7117da2", + "language": "Python", + "lines": 210, + "truncated": false, + "block": 1, + "row": 8288 + }, + { + "path": "BAR/src/main/resources/scripts/BAR/Annotation/ROI_Magnifier_Tool.js", + "sha256": "5c945bb599d3b3066ce73c37bba8b7f7b02d0aecaa2775562a65144255d4698d", + "language": "JavaScript", + "lines": 14, + "truncated": false, + "block": 1, + "row": 652 + }, + { + "path": "BAR/src/main/resources/scripts/BAR/Data_Analysis/NN_Distances.py", + "sha256": "ba958ae6cff6b8e94e40bc978f1b34e24eb12ce306dba6a551378b559b505be4", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 1, + "row": 6971 + }, + { + "path": "BAR/src/main/resources/tutorials/Python01.py", + "sha256": "a4db8f5bb8d25015549c17cecd567df89bb03c0f3fec7426fcbbde8d5fda9430", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 1, + "row": 6583 + }, + { + "path": "BAR/src/main/resources/tutorials/Python02.py", + "sha256": "ffa69525f777d6c21de857949f3be1990bb117a1e82babe08cb3319b73e31ad6", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 1, + "row": 5713 + }, + { + "path": "BAR/src/main/resources/tutorials/Python03.py", + "sha256": "f417edc84f571ddfe4652821fe2afa52fdedf3caa398aa97a081ea304c7aabe1", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 1, + "row": 5815 + }, + { + "path": "BAR/src/main/resources/tutorials/Python04.py", + "sha256": "d40e44d2b37c9b4d76135cfeca933bdba57de32f4247942e0326bb88b15ea139", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 1, + "row": 6567 + }, + { + "path": "BAR/src/main/resources/tutorials/Python05-1.py", + "sha256": "9099a6c9db6313a7247ca666c0d8d59278e9d827daa31cc1fefcaa11cc6ef0bb", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 1, + "row": 6015 + }, + { + "path": "BAR/src/main/resources/tutorials/Python05-2.py", + "sha256": "3a0e02036f97fc97ab0db2ea406e3e24ec814e65b90cc23df36cc798970cbc41", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 1, + "row": 5621 + }, + { + "path": "BAR/src/main/resources/tutorials/Python05-3.py", + "sha256": "21b8e817e454558ec6ac3dbd12a068efd82f3fe3fbf4fd0f5e0bc2341a5f7c3e", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 1, + "row": 6100 + }, + { + "path": "BAR/src/main/resources/tutorials/Python05-4.py", + "sha256": "4cd20b9e5c450b5cfa14f8d8af82953f9957df5c34cf142ac54bb67682593ec5", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 1, + "row": 6089 + }, + { + "path": "BAR/src/main/resources/tutorials/Python06.py", + "sha256": "cd3fc0dba636414ae4729296aa02fd364eb376b4f68a30280cd9163d254d10e3", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 5797 + }, + { + "path": "LICENSE.txt", + "sha256": "8ceb4b9ee5adedde47b31e975c1d90c73ad27b6b165a1dcd80c7c545eb65b903", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2234 + }, + { + "path": "README.md", + "sha256": "c941f18b44957fe1fbb713af3c3ce51884da7c6227cdb34bf21bbbdf851c36b1", + "language": "Text", + "lines": 171, + "truncated": false, + "block": 1, + "row": 11971 + }, + { + "path": "boneyard/Clipboard_to_Results.py", + "sha256": "472d1afc834a00f2ffd48d08d208e537c507acaeec1f90c093f375a15b106339", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 1, + "row": 5782 + }, + { + "path": "boneyard/start-upload.sh", + "sha256": "7e9f9d712ba523af90852966a75f660cf8e955511970d56765dddd1eefe2bb60", + "language": "Shell", + "lines": 47, + "truncated": false, + "block": 1, + "row": 11653 + } + ] +} \ No newline at end of file diff --git a/manifests/05/zenodo__22011941.json b/manifests/05/zenodo__22011941.json new file mode 100644 index 0000000000000000000000000000000000000000..ba6b698f35b3c3fef09ee3ab1a1200174a171b38 --- /dev/null +++ b/manifests/05/zenodo__22011941.json @@ -0,0 +1,273 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:22011941", + "url": "https://doi.org/10.5281/zenodo.22011941", + "host": "zenodo.org", + "commit": "", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "c71d239df91726fc519c6eb72d318ec65820627232b2f796219e87dcf35d0ab4", + "language": "License", + "lines": 201, + "truncated": false, + "block": 1, + "row": 2216 + }, + { + "path": "README.md", + "sha256": "24789be81e92d4d2b23ad6e0dbb417fccb31c02a3f5d550d51778121470250d7", + "language": "Text", + "lines": 90, + "truncated": false, + "block": 1, + "row": 11890 + }, + { + "path": "clusters.py", + "sha256": "b8bc05607e1a11c65c2a50be5b5f222c56eb6cb806cb7e907372ef7bd11df018", + "language": "Python", + "lines": 584, + "truncated": false, + "block": 1, + "row": 9287 + }, + { + "path": "degree_analysis.py", + "sha256": "ecc7f5fbe96d9bfbf270f9910ec70850ff9c526c847cc62a3c0b1abf41252994", + "language": "Python", + "lines": 1069, + "truncated": false, + "block": 1, + "row": 9715 + }, + { + "path": "fit_to_sjostrom.py", + "sha256": "73fad73a99587e94781510f83d4208610e90bad2eaa7d2eb13cda241893aef38", + "language": "Python", + "lines": 1350, + "truncated": false, + "block": 1, + "row": 9770 + }, + { + "path": "fitted_models.py", + "sha256": "e6fb2a3130b987394562f7a9f4056e063dc6e23dfa159957cb81bfbee11bdd12", + "language": "Python", + "lines": 772, + "truncated": false, + "block": 1, + "row": 9563 + }, + { + "path": "inh_activity_analysis.py", + "sha256": "85e6b3d34844ad1362cf5334818332c25445ca00e013e8ba132fc86b50bf4d6f", + "language": "Python", + "lines": 192, + "truncated": false, + "block": 1, + "row": 7976 + }, + { + "path": "network_simulations/PARAMETERS.py", + "sha256": "fca292e76489677b246f5f7764c6dc41e66da2547e95c4eb4eb7a3240b78c2b7", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 1, + "row": 6034 + }, + { + "path": "network_simulations/network_models.py", + "sha256": "12b0a22b53c3a1a59e37431e9e6b4ce7ff12820636d41075b61dd0d87956e2e6", + "language": "Python", + "lines": 740, + "truncated": false, + "block": 1, + "row": 9734 + }, + { + "path": "network_simulations/run_capacity_defaults.sh", + "sha256": "2e1245bf2123a8863a2e054749932eac2db0816aa6fe9fd62d85836c63d3c00c", + "language": "Shell", + "lines": 37, + "truncated": false, + "block": 1, + "row": 11494 + }, + { + "path": "network_simulations/run_capacity_fac.sh", + "sha256": "a2bc4459b74b1661fe2c2a2336cb4ac2364b391fc2c0e0943007b7dac6424dc9", + "language": "Shell", + "lines": 130, + "truncated": false, + "block": 1, + "row": 11708 + }, + { + "path": "network_simulations/run_capacity_slstdp_wnorm.sh", + "sha256": "c5a09ee4137c31fcf596cb181613f1aab237b52287dd6ab994b805b70c5427a7", + "language": "Shell", + "lines": 19, + "truncated": false, + "block": 1, + "row": 11168 + }, + { + "path": "network_simulations/run_capacity_triplet_wnorm.sh", + "sha256": "62e764e3945dacd870bc040adb4591eee88d63265de1c523cfa015cb72032aac", + "language": "Shell", + "lines": 19, + "truncated": false, + "block": 1, + "row": 11167 + }, + { + "path": "network_simulations/run_network_simulations.py", + "sha256": "950c4fb6f8ed59cc43acfc86d1f860edfdef7a039a69702e8f9bfa2029ebdf46", + "language": "Python", + "lines": 1442, + "truncated": false, + "block": 1, + "row": 9830 + }, + { + "path": "network_simulations/run_wm_stp.sh", + "sha256": "bb32ed3d168157461da6ff34bae2dfc9787a4de029d8746bc4c343609ae1ea90", + "language": "Shell", + "lines": 8, + "truncated": false, + "block": 1, + "row": 11128 + }, + { + "path": "network_simulations/utils/capacity_utils.py", + "sha256": "4755dd5723dfe8b03d17257244b3415ba1b66cea3f222f10167fd061cb98e389", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 1, + "row": 6019 + }, + { + "path": "network_simulations/utils/nest_utils.py", + "sha256": "fc145de9997cbb87ceef93cdbf68da5e300b9ca2afcacbd71783b1c26f5c9706", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 1, + "row": 7887 + }, + { + "path": "network_simulations/utils/netGen_utils.py", + "sha256": "c6c9d512e346c86d0751b30f5ca048d6e8eefffde2611143ce94ade6a6788467", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 1, + "row": 6225 + }, + { + "path": "network_simulations/utils/taskGen_utils.py", + "sha256": "fb5ca1889c3436e6f730ff2ad77dc11866075dc191123edcada90a2758a8056d", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 1, + "row": 6321 + }, + { + "path": "network_simulations/wm_task_analysis.py", + "sha256": "07834241c19b2d9acd352f0315737bcf39266c9d157fa8d680ea56a306fc6a30", + "language": "Python", + "lines": 973, + "truncated": false, + "block": 1, + "row": 9731 + }, + { + "path": "plot_dwdt.py", + "sha256": "d3714f9925806131b4c643ce161789f63e2f0e881a309a46ab00d5ac9cc6fae9", + "language": "Python", + "lines": 513, + "truncated": false, + "block": 1, + "row": 9282 + }, + { + "path": "plot_raster_synchrony.py", + "sha256": "5e7271b911fe0e1007011cc9bf3e8599a54741aee888ffdca9df5927f6a60acd", + "language": "Python", + "lines": 265, + "truncated": false, + "block": 1, + "row": 8641 + }, + { + "path": "stdp_simulation_fitted.py", + "sha256": "f58ba6990159a4dd9b146814e4aaae522de652ef61aee13826847280f057c631", + "language": "Python", + "lines": 195, + "truncated": false, + "block": 1, + "row": 7859 + }, + { + "path": "tests/nestml_sl-stdp_test.py", + "sha256": "15bc8d9917d0cd2deba87f7116061914a0ec3e642bc4f782d8edfdee468b37bb", + "language": "Python", + "lines": 259, + "truncated": false, + "block": 1, + "row": 8400 + }, + { + "path": "tests/nestml_triplet_test.py", + "sha256": "71b2898edf171c328885c82345aa7b4d73a8131882359290846148810e499a4b", + "language": "Python", + "lines": 258, + "truncated": false, + "block": 1, + "row": 8367 + }, + { + "path": "tests/stp_params.py", + "sha256": "4180e0a7096d6c0d3c94fb25dee9099b5ac75310e32d825fb23586c8dad33ee4", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 1, + "row": 6555 + }, + { + "path": "tests/test_utils.py", + "sha256": "a04be132206b414a7f0f67f545be9535305777e9519fab8044756660a2061cc4", + "language": "Python", + "lines": 108, + "truncated": false, + "block": 1, + "row": 6952 + }, + { + "path": "utils/genSpikes.py", + "sha256": "f25a4172b69d4c463ab0b5607e78634c1da4252df7e3bea661a536f68ab23689", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 1, + "row": 6521 + }, + { + "path": "utils/general.py", + "sha256": "6fef4b628dc9addc358fd9bef46bdb56e45d9ef596f111f2ef8c1d9c1c0522d3", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 1, + "row": 5504 + } + ] +} \ No newline at end of file diff --git a/manifests/06/github.com__allenneuraldynamics__aind-ephys-visualization.json b/manifests/06/github.com__allenneuraldynamics__aind-ephys-visualization.json new file mode 100644 index 0000000000000000000000000000000000000000..4aaa7075358eceb79c46be0b8a35e38150f844ca --- /dev/null +++ b/manifests/06/github.com__allenneuraldynamics__aind-ephys-visualization.json @@ -0,0 +1,48 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/allenneuraldynamics/aind-ephys-visualization", + "url": "https://github.com/AllenNeuralDynamics/aind-ephys-visualization", + "host": "github.com", + "commit": "64a452c052670a74f323ff9095252bfdce814e45", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "d7609c858f47823b9d7cee46253bffc40e93fd55effa744aa249e97a603c65cb", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1139 + }, + { + "path": "README.md", + "sha256": "f80aea8995419f6c8cf4cd9e5eeef673e9c334814463b499bd58d6dc7e33005f", + "language": "Text", + "lines": 79, + "truncated": false, + "block": 2, + "row": 2632 + }, + { + "path": "code/run_capsule.py", + "sha256": "158d089e327d30e6cfb0c6fd576daf9e1372b5d3b2796b5e6955f1551798f40c", + "language": "Python", + "lines": 750, + "truncated": false, + "block": 2, + "row": 2219 + }, + { + "path": "code/visualize_session.ipynb", + "sha256": "9b4bc657ba6bdc1329e5966a0188e5d2d9daa1bd64ecc7340d386685564e5cae", + "language": "Jupyter", + "lines": 26, + "truncated": false, + "block": 2, + "row": 1004 + } + ] +} \ No newline at end of file diff --git a/manifests/06/github.com__languagemit__naturalstories.json b/manifests/06/github.com__languagemit__naturalstories.json new file mode 100644 index 0000000000000000000000000000000000000000..10ae197a5b664d6c464d2688da8049a2e0a09835 --- /dev/null +++ b/manifests/06/github.com__languagemit__naturalstories.json @@ -0,0 +1,75 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/languagemit/naturalstories", + "url": "https://github.com/languageMIT/naturalstories", + "host": "github.com", + "commit": "4700daad696e942f5aba23c957a7423d0de66612", + "license": "CC-BY-NC-SA-4.0", + "license_confirmed_by": "license file LICENSE.txt", + "redistribution": "with_conditions", + "files": [ + { + "path": "LICENSE.txt", + "sha256": "58032a8173195237068ab02d429948bc3233d8e6858d1b9ddfdc47e3bbc3d847", + "language": "License", + "lines": 437, + "truncated": false, + "block": 1, + "row": 2227 + }, + { + "path": "README.md", + "sha256": "02fcc9104a8887c3f67e1be47d17a7253476628dbacde3fccec67a76deef285f", + "language": "Text", + "lines": 54, + "truncated": false, + "block": 1, + "row": 11867 + }, + { + "path": "audio/scripts/align_textgrids.py", + "sha256": "8c5afff8e86690685a5108e7a04af15d391e106abd05152b2d96b91d90be8c3c", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 1, + "row": 7160 + }, + { + "path": "freqs/scripts/get_freqs.py", + "sha256": "64448b10c2467b917e7798bce9c820dc6096d31d95d1c821edd75517b8261963", + "language": "Python", + "lines": 265, + "truncated": false, + "block": 1, + "row": 8404 + }, + { + "path": "naturalstories_RTS/analysis_of_batches.R", + "sha256": "f5b15fb3ae59aa90d2d06f6a7c4328cc805b957416e3925c2d38a7027014b190", + "language": "R", + "lines": 70, + "truncated": false, + "block": 1, + "row": 10077 + }, + { + "path": "naturalstories_RTS/process_RTs.R", + "sha256": "1098055c096701d41b2ba7c558cd863b1a5d26922a7804c6006ee1594cf6d805", + "language": "R", + "lines": 36, + "truncated": false, + "block": 1, + "row": 9979 + }, + { + "path": "parses/align_parses.py", + "sha256": "04f23033394f7ef4f0b210824f271ba4abde2fd1b57f58ad09609224180452dc", + "language": "Python", + "lines": 224, + "truncated": false, + "block": 1, + "row": 8205 + } + ] +} \ No newline at end of file diff --git a/manifests/07/github.com__sofiakouki__frost-action-classification.json b/manifests/07/github.com__sofiakouki__frost-action-classification.json new file mode 100644 index 0000000000000000000000000000000000000000..21d3b6e1c450fb79cfcddc119d325eb95f1564aa --- /dev/null +++ b/manifests/07/github.com__sofiakouki__frost-action-classification.json @@ -0,0 +1,174 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/sofiakouki/frost-action-classification", + "url": "https://github.com/SofiaKouki/Frost-Action-Classification.git", + "host": "github.com", + "commit": "88817644eaadf31b12aed6ead259040347cd9c36", + "license": "CC0-1.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "a2010f343487d3f7618affe54f789f5487602331c0a8d03f49e9a7c547cf0499", + "language": "License", + "lines": 121, + "truncated": false, + "block": 1, + "row": 2210 + }, + { + "path": "README.md", + "sha256": "902392247ae7b6ce859a3b331071a2360bbed773a381ea2ddcc89794632ff76d", + "language": "Text", + "lines": 157, + "truncated": false, + "block": 1, + "row": 11937 + }, + { + "path": "codes_for_models_and_interpretability/bnn_binary.py", + "sha256": "dddb4d1f017e4f26ef195a7c805bf23039d18445b3785b8d8c420c7b3f969d17", + "language": "Python", + "lines": 886, + "truncated": false, + "block": 1, + "row": 9654 + }, + { + "path": "codes_for_models_and_interpretability/long_tail.py", + "sha256": "5c50e87d8afa797e8ccaa2f15952dd00d264f388b4234fe63413e20f4aba507e", + "language": "Python", + "lines": 750, + "truncated": false, + "block": 1, + "row": 9557 + }, + { + "path": "codes_for_models_and_interpretability/neu_bnn_multiclass.py", + "sha256": "db0697bb7f0559913806c3bac518b658bde61cd9658529a37b83c43c48720578", + "language": "Python", + "lines": 987, + "truncated": false, + "block": 1, + "row": 9694 + }, + { + "path": "codes_for_models_and_interpretability/neu_cnn_binary.py", + "sha256": "52956a4cb6a084ab2d43cfae3be9b141aae47856b6c9a265d19f85e0869cbc90", + "language": "Python", + "lines": 1109, + "truncated": false, + "block": 1, + "row": 9723 + }, + { + "path": "codes_for_models_and_interpretability/neu_cnn_multiclass.py", + "sha256": "ab999afc6198be9dc2b0c62e69f51a7a23ec6e0b2bedbebc5e844bcce91bc83f", + "language": "Python", + "lines": 992, + "truncated": false, + "block": 1, + "row": 9693 + }, + { + "path": "codes_for_models_and_interpretability/neu_efficient_binary.py", + "sha256": "e4e09bfb23adebcd206cedc1902b428468256133d3d9eef99d805c0daac57daf", + "language": "Python", + "lines": 800, + "truncated": false, + "block": 1, + "row": 9615 + }, + { + "path": "codes_for_models_and_interpretability/neu_efficient_multiclass.py", + "sha256": "49ddb0242fac89b33d21ca8a286a44bf778fc1e51010a19ae720998d3288f246", + "language": "Python", + "lines": 980, + "truncated": false, + "block": 1, + "row": 9710 + }, + { + "path": "codes_for_models_and_interpretability/neu_mobile_binary.py", + "sha256": "0c0e183bdaf1e84cb30a304abb1b07435ddfd88927b41742c08990606d0f61ed", + "language": "Python", + "lines": 1157, + "truncated": false, + "block": 1, + "row": 9754 + }, + { + "path": "codes_for_models_and_interpretability/neu_mobile_multiclass.py", + "sha256": "0e4f88decc8a544157d41a7a909046c83d0496a328c8fc8ad1f83a02351175be", + "language": "Python", + "lines": 1343, + "truncated": false, + "block": 1, + "row": 9790 + }, + { + "path": "codes_for_models_and_interpretability/neu_resnet_binary.py", + "sha256": "df7d97042d173f1682456d86f4bddbfe9a7f6cb10f41e8b1e16b128892d514ae", + "language": "Python", + "lines": 1280, + "truncated": false, + "block": 1, + "row": 9780 + }, + { + "path": "codes_for_models_and_interpretability/neu_resnet_multiclass.py", + "sha256": "ff65ac6ce2638f8689408028376989231a837649b08790f5fac3f71568e38880", + "language": "Python", + "lines": 1443, + "truncated": false, + "block": 1, + "row": 9800 + }, + { + "path": "codes_for_models_and_interpretability/photomicrgraphs.py", + "sha256": "c189eaa3ea51d375d18e394159051c3367ac8ecee149f54e92d5c136d14eba05", + "language": "Python", + "lines": 1010, + "truncated": false, + "block": 1, + "row": 9692 + }, + { + "path": "experts_models_comparisons/human_ai_alignment_2.ipynb", + "sha256": "8c8a1433fc2b928063991125f22966f1cf294aa21cab3f4cb8e5cfa21a2b3f8e", + "language": "Jupyter", + "lines": 3605, + "truncated": false, + "block": 1, + "row": 2062 + }, + { + "path": "experts_models_comparisons/survey.ipynb", + "sha256": "af862ff3088545dcbac84a004e36b133b51c4213294bd019e5cd0fa56a5f36ab", + "language": "Jupyter", + "lines": 2664, + "truncated": false, + "block": 1, + "row": 2057 + }, + { + "path": "statistical_analaysis/ml_frost_binary_multiclass_performance_plots (1).ipynb", + "sha256": "17ae18721d70dd820b3012d7e984e435a4449342e81dc69ad478d71c31b5b106", + "language": "Jupyter", + "lines": 1096, + "truncated": false, + "block": 1, + "row": 2049 + }, + { + "path": "statistical_analaysis/ml_frost_statistical_evaluation.py", + "sha256": "61d83a71017ad46b37908a8370023434246fa0a255a016daddb5bc03e24f74bd", + "language": "Python", + "lines": 279, + "truncated": false, + "block": 1, + "row": 8662 + } + ] +} \ No newline at end of file diff --git a/manifests/07/github.com__tommyclausner__mri-volume-masker-3000-tm.json b/manifests/07/github.com__tommyclausner__mri-volume-masker-3000-tm.json new file mode 100644 index 0000000000000000000000000000000000000000..8c33d660a8bd73cd946f75065970e94cd024d817 --- /dev/null +++ b/manifests/07/github.com__tommyclausner__mri-volume-masker-3000-tm.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/tommyclausner/mri-volume-masker-3000-tm", + "url": "https://github.com/TommyClausner/MRI-Volume-Masker-3000-TM/tree/v1.0.0", + "host": "github.com", + "commit": "28edfc8cef53197f6725c285bf914b13ddcd0305", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "89d5e3defc7daa56a1c02886b57bbc58fdef8aac075bf3ae24c1c65650c4645d", + "language": "Text", + "lines": 74, + "truncated": false, + "block": 1, + "row": 11846 + }, + { + "path": "vol2mask.py", + "sha256": "b6297b7bf51ffde53a0e26de981311a114dd6c3adef1b2463912fd4720645f46", + "language": "Python", + "lines": 751, + "truncated": false, + "block": 1, + "row": 9521 + } + ] +} \ No newline at end of file diff --git a/manifests/09/github.com__waadgo__raven.json b/manifests/09/github.com__waadgo__raven.json new file mode 100644 index 0000000000000000000000000000000000000000..cef10c30118f6272da128fec46eb9e920ca97e42 --- /dev/null +++ b/manifests/09/github.com__waadgo__raven.json @@ -0,0 +1,2541 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/waadgo/raven", + "url": "https://github.com/waadgo/raven", + "host": "github.com", + "commit": "a16c2fe61b91871694f0ef759a657780df8f5375", + "license": "MIT", + "license_confirmed_by": "license file License.txt", + "redistribution": "yes", + "files": [ + { + "path": "License.txt", + "sha256": "f6216cce912c447025b8aacfa9ac09634c43815cd8d87762528300e5ddf6b959", + "language": "License", + "lines": 19, + "truncated": false, + "block": 1, + "row": 2175 + }, + { + "path": "README.md", + "sha256": "501187b7229040f7d65b3033f6c23b816870edbe772facee958f8299de22b912", + "language": "Text", + "lines": 100, + "truncated": false, + "block": 1, + "row": 11887 + }, + { + "path": "data_generation/build_manifests.py", + "sha256": "d54d6f434198cbc5c120dcd6e432829566ffbf106cfa531c1eed4a17b1549632", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 1, + "row": 6118 + }, + { + "path": "data_generation/create_hdf5.py", + "sha256": "272077647aa88a3df8aa5f2a765f8e92c3077527873cf278c6bd965538efa43d", + "language": "Python", + "lines": 207, + "truncated": false, + "block": 1, + "row": 8148 + }, + { + "path": "data_generation/legacy/RAVEN_LDM_AHEAD_train.py", + "sha256": "8b63e4f641ead459028d2a47ec2ab41b86e6a5bc0d86ff88ca98de94ea84a85d", + "language": "Python", + "lines": 377, + "truncated": false, + "block": 1, + "row": 9090 + }, + { + "path": "data_generation/legacy/RAVEN_LDM_AHEAD_val.py", + "sha256": "3b2b6e055f9edb4c66721f97251f1886b7bf101fc5547b17f65ae90ef9f86ab9", + "language": "Python", + "lines": 378, + "truncated": false, + "block": 1, + "row": 9086 + }, + { + "path": "data_generation/legacy/RAVEN_LDM_AOMICID1000_train.py", + "sha256": "969fa0e54e677d688bfe97f4173d040688f935990ab611f0b6fab905772bfc4f", + "language": "Python", + "lines": 379, + "truncated": false, + "block": 1, + "row": 9098 + }, + { + "path": "data_generation/legacy/RAVEN_LDM_AOMICID1000_val.py", + "sha256": "cf8694dde7c331e5b9c1af795ebc969c3021775f75e542bc056df87bffd76ea7", + "language": "Python", + "lines": 379, + "truncated": false, + "block": 1, + "row": 9095 + }, + { + "path": "data_generation/legacy/RAVEN_LDM_AOMICPIOP1_train.py", + "sha256": "050ae1131a83bdaed0d0673d610326e52680ca2bb558040b0f7481b9749ab2c7", + "language": "Python", + "lines": 379, + "truncated": false, + "block": 1, + "row": 9096 + }, + { + "path": "data_generation/legacy/RAVEN_LDM_AOMICPIOP1_val.py", + "sha256": "1dc5040d1f8897f3cdae594d18ba1eb248c646a19fd28c5ab4c748e264b70c65", + "language": "Python", + "lines": 379, + "truncated": false, + "block": 1, + "row": 9093 + }, + { + "path": "data_generation/legacy/RAVEN_LDM_AOMICPIOP2_train.py", + "sha256": "e0612d16531de0ef0e7a032ca5471a9ffe371cadc37bae912dab296747384efd", + "language": "Python", + "lines": 379, + "truncated": false, + "block": 1, + "row": 9097 + }, + { + "path": "data_generation/legacy/RAVEN_LDM_AOMICPIOP2_val.py", + "sha256": "a5e3f60259ea651f18fd8c19defb55a39e7635b11634dbefcb071a4c96777027", + "language": "Python", + "lines": 379, + "truncated": false, + "block": 1, + "row": 9094 + }, + { + "path": "data_generation/legacy/RAVEN_LDM_CHEN_train.py", + "sha256": "cc499f5ebe378dda45582110880a8accbaa6249e785bfa4c3f75e174e6eb8038", + "language": "Python", + "lines": 379, + "truncated": false, + "block": 1, + "row": 9091 + }, + { + "path": "data_generation/legacy/RAVEN_LDM_CHEN_val.py", + "sha256": "91d520c1c43a9179bf651619780d342dee6a5ec96e0312fcdc776d3ff5ae2e58", + "language": "Python", + "lines": 379, + "truncated": false, + "block": 1, + "row": 9084 + }, + { + "path": "data_generation/legacy/RAVEN_LDM_HBA_train.py", + "sha256": "c578e9f56f652fb9e731e50b21f115f5f639771995b66450634829eaf8c0ad36", + "language": "Python", + "lines": 379, + "truncated": false, + "block": 1, + "row": 9088 + }, + { + "path": "data_generation/legacy/RAVEN_LDM_HBA_val.py", + "sha256": "14c5fefabb61973d1b01a84ac92447ae0dc5eeaf3fe3625a098ad746e6a58b33", + "language": "Python", + "lines": 379, + "truncated": false, + "block": 1, + "row": 9082 + }, + { + "path": "data_generation/legacy/RAVEN_LDM_HCP_train.py", + "sha256": "7afcde5314b76fb70d5ec1eef1827cc24809da101db5b2c99ee01a078e0d80b6", + "language": "Python", + "lines": 379, + "truncated": false, + "block": 1, + "row": 9087 + }, + { + "path": "data_generation/legacy/RAVEN_LDM_HCP_val.py", + "sha256": "47dffa4e78bb6f474212332b3fc4636036a6e4ec7ab3c4ac6677694f29086672", + "language": "Python", + "lines": 379, + "truncated": false, + "block": 1, + "row": 9083 + }, + { + "path": "data_generation/legacy/RAVEN_LDM_OSCBS_train.py", + "sha256": "5ca46de480d0f5f3f1dfa47fc0a7a50de6c7a2f848e050183ea81a7522582e8f", + "language": "Python", + "lines": 379, + "truncated": false, + "block": 1, + "row": 9092 + }, + { + "path": "data_generation/legacy/RAVEN_LDM_OSCBS_val.py", + "sha256": "d451a4157e18e47bdfae44d166d15a5bdb6741eaa600f9e4fd2073351759903e", + "language": "Python", + "lines": 379, + "truncated": false, + "block": 1, + "row": 9085 + }, + { + "path": "data_generation/legacy/RAVEN_v5_AHEAD_train.py", + "sha256": "fcda5a599c4f033e1ebbba16fa9528e8590aee139aa0b2e5aecd7389582dc210", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 1, + "row": 8227 + }, + { + "path": "data_generation/legacy/RAVEN_v5_AHEAD_val.py", + "sha256": "1e5b210dd33fd9b4d16879220524d744f364fa291f311f26b5edb4eeb40d3a1a", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 1, + "row": 8219 + }, + { + "path": "data_generation/legacy/RAVEN_v5_AOMICID1000_train.py", + "sha256": "a5326674cd92927473ed103cebb5bb2901470528713e2c988e6a24d1ce2d74be", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 1, + "row": 8236 + }, + { + "path": "data_generation/legacy/RAVEN_v5_AOMICID1000_val.py", + "sha256": "aac4f990ea5dd5cd11d61e8a45b2aff44d049fa64c69005f7a0145551b756984", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 1, + "row": 8232 + }, + { + "path": "data_generation/legacy/RAVEN_v5_AOMICPIOP1_train.py", + "sha256": "f252dd8cb2d5d158a5fc8c119bdf66535a5204bcf6fd23dcd7830c6532ba8715", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 1, + "row": 8235 + }, + { + "path": "data_generation/legacy/RAVEN_v5_AOMICPIOP1_val.py", + "sha256": "052b930dd1cef0bef7297d8c2eb805227863e328b84faf9316929277f5a69bfd", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 1, + "row": 8231 + }, + { + "path": "data_generation/legacy/RAVEN_v5_AOMICPIOP2_train.py", + "sha256": "49b471fc52c17e5322b0a9a62acce2f1f7d9a8db2c6fc8706dd44d2ed640c697", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 1, + "row": 8234 + }, + { + "path": "data_generation/legacy/RAVEN_v5_AOMICPIOP2_val.py", + "sha256": "8423095254f911038ead25611b4ab719ed1ddc9f4ac3c8e1609d571b40bf37d8", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 1, + "row": 8230 + }, + { + "path": "data_generation/legacy/RAVEN_v5_CHEN_train.py", + "sha256": "6ff745d27a4eb1f8b212d98a6289f3327b839f64c92f6c40e3a622404e8b43ba", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 1, + "row": 8224 + }, + { + "path": "data_generation/legacy/RAVEN_v5_CHEN_val.py", + "sha256": "3eb76572fb452de5a368a0677ba2d0220b596c7c671aae6b7df20b6aa3285079", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 1, + "row": 8218 + }, + { + "path": "data_generation/legacy/RAVEN_v5_HBA_train.py", + "sha256": "eaf0e4c4974fd9542d86b3841c49585c686651c0acdf9ec71ba69af956f3b75b", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 1, + "row": 8222 + }, + { + "path": "data_generation/legacy/RAVEN_v5_HCP_train.py", + "sha256": "1ef1b6c4059a768f4ec9f8412d139be1bfd87f10aac055bdaa7f5bff12861d7e", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 1, + "row": 8223 + }, + { + "path": "data_generation/legacy/RAVEN_v5_HCP_val.py", + "sha256": "aab9844d520d5dd058f5ec75b2bc0d0a7370c3ea6d77cd9c55e5830e8b0a3c87", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 1, + "row": 8217 + }, + { + "path": "data_generation/legacy/RAVEN_v5_OSCBS_train.py", + "sha256": "aeabd37d8e1224dd8b0c492891e053f29f03af6e07712ed049d1090fdc43881b", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 1, + "row": 8226 + }, + { + "path": "data_generation/legacy/RAVEN_v5_OSCBS_val.py", + "sha256": "675340a5d6bc8cb1e2e8f6bf84e477a2f36eb19fad13e1f3f4ce6d97b15360da", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 1, + "row": 8221 + }, + { + "path": "data_generation/legacy/RAVE_LDM_AHEAD_train.py", + "sha256": "d8bfc6b00e9cef6c2eb2712b7fb10859e09403369be505e4dfa6a64b371f8a04", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 1, + "row": 8228 + }, + { + "path": "data_generation/legacy/check_hdf5.py", + "sha256": "d3c98ad40f2aa202623b26146c9bdec5cf506f41ef63ea62b670a81e7b9b38c1", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 1, + "row": 6735 + }, + { + "path": "data_generation/legacy/data_loader/DS_dataset.py", + "sha256": "5b7f46b4e4b454804348d3b4558922cac0741d7fef7d179fc1578eec3383c385", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 1, + "row": 7994 + }, + { + "path": "data_generation/legacy/data_loader/augmentation.py", + "sha256": "31cbc3445339a7a4e33c56d601f4c5f1e8774a37c1639f46bb4d23a2b07e4fe0", + "language": "Python", + "lines": 133, + "truncated": false, + "block": 1, + "row": 7005 + }, + { + "path": "data_generation/legacy/data_loader/checkpoints.py", + "sha256": "766c6cc0e7e4917777533df82d07ee5c0a5068352b42826fcc934ccd1d672feb", + "language": "Python", + "lines": 108, + "truncated": false, + "block": 1, + "row": 7239 + }, + { + "path": "data_generation/legacy/data_loader/common.py", + "sha256": "9518d480134d7726407a8615a886bea91f20aefbed673bee7e256139d7c5e8e9", + "language": "Python", + "lines": 389, + "truncated": false, + "block": 1, + "row": 8830 + }, + { + "path": "data_generation/legacy/data_loader/conform.py", + "sha256": "df1a9e304df16e53e43fea8ef739664dc756962c74583c2681f3242cc9e815af", + "language": "Python", + "lines": 1051, + "truncated": false, + "block": 1, + "row": 9755 + }, + { + "path": "data_generation/legacy/data_loader/conform_2.py", + "sha256": "c5cb057fb9642966b4e64cde8fb69561fa56f098f7c291acc664ba4545d6b182", + "language": "Python", + "lines": 970, + "truncated": false, + "block": 1, + "row": 9730 + }, + { + "path": "data_generation/legacy/data_loader/get_varying_maps.py", + "sha256": "8b1b6e3d2dff659593471b2d2d6f604e4ae7e7fe67eb7d549abaa76db42b89ff", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 1, + "row": 5793 + }, + { + "path": "data_generation/legacy/data_loader/load_neuroimaging_data.py", + "sha256": "c1b0a8997e5ad05d7ffc4458ff9bd366822f41fd1bd482afd321ffdb612f4fb1", + "language": "Python", + "lines": 599, + "truncated": false, + "block": 1, + "row": 9386 + }, + { + "path": "data_generation/legacy/data_loader/load_neuroimaging_data_2.py", + "sha256": "44664aeb2a5dd1a569e3185acfd3866b7c0bd080afd9a4eecea2a6bdf1ef2034", + "language": "Python", + "lines": 577, + "truncated": false, + "block": 1, + "row": 9349 + }, + { + "path": "data_generation/legacy/data_loader/load_neuroimaging_data_final.py", + "sha256": "a8283b38b32388671fe9e1d31efd381c93c35e487af007a4306208a433a40f9b", + "language": "Python", + "lines": 1277, + "truncated": false, + "block": 1, + "row": 9792 + }, + { + "path": "data_generation/legacy/data_loader/model_config.py", + "sha256": "6ad29c5ec23dd9d5ff3d1b6f2ce68696165a2a30f50d35861782f14daf77e3b6", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 1, + "row": 5077 + }, + { + "path": "data_generation/legacy/data_loader/mri_vol2vol.py", + "sha256": "1b73f780fab9480b4d1253af723da4152bed7953c857a2acee3b646190d3c434", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 6107 + }, + { + "path": "data_generation/legacy/data_loader/variable_field_map_test.py", + "sha256": "a4c3d71cf6ed33b6b0d2153c2964c7bbe139cd321e73afb79d764216378dc181", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 1, + "row": 5380 + }, + { + "path": "data_generation/legacy/test.py", + "sha256": "31fbd4dfd51d217a775bcb36778e2f7f49dd6ff818e75bf7db5b54b78eea9e48", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 1, + "row": 5313 + }, + { + "path": "data_generation/legacy/utils.py", + "sha256": "f7916f6cc661fe0faef259b959df96c4d99718e0bd1b5f3f2b7972e9faf8da1b", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 1, + "row": 6400 + }, + { + "path": "data_generation/legacy/utils2.py", + "sha256": "3450cd98e98fc0129c8f61f7f057eef1ee9561c1be0ed5f6db0e2fc1135ab731", + "language": "Python", + "lines": 240, + "truncated": false, + "block": 1, + "row": 8533 + }, + { + "path": "infer.py", + "sha256": "3dfbade151d869d0d743cb330eb08da4d91fdc0b97ea53078ad488c7b86265e5", + "language": "Python", + "lines": 407, + "truncated": false, + "block": 1, + "row": 9143 + }, + { + "path": "inference.py", + "sha256": "0e6ecb1102acd753287fed51adbcc15220751b0fd962441443fe72b5f7a01bb3", + "language": "Python", + "lines": 1776, + "truncated": false, + "block": 1, + "row": 9833 + }, + { + "path": "inference/raven_v1_3/runtime/autoencoder_eval_3D_patches_v18_cpuaware_cascade.py", + "sha256": "c486a31fe301d3dc051dca53d8ecf744be15640cd23831c8b3b96c9d1e1d698e", + "language": "Python", + "lines": 1759, + "truncated": false, + "block": 1, + "row": 9831 + }, + { + "path": "inference/raven_v1_3/runtime/data_loader/__init__.py", + "sha256": "7ada44de914c33bd7e80cab85c5564fe1156015b954be52082871dd338acd61d", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5051 + }, + { + "path": "inference/raven_v1_3/runtime/data_loader/augmentation.py", + "sha256": "31cbc3445339a7a4e33c56d601f4c5f1e8774a37c1639f46bb4d23a2b07e4fe0", + "language": "Python", + "lines": 133, + "truncated": false, + "block": 1, + "row": 7005 + }, + { + "path": "inference/raven_v1_3/runtime/data_loader/checkpoints.py", + "sha256": "724dd93c7432c48236cd8181b7e5690c0bcedf1b97b2f66dad2ace3e5c48c74a", + "language": "Python", + "lines": 83, + "truncated": false, + "block": 1, + "row": 6738 + }, + { + "path": "inference/raven_v1_3/runtime/data_loader/common.py", + "sha256": "5bd2e958f44ba959f4be1296a33284549e4e84c28cace2abc9802190321bfe9b", + "language": "Python", + "lines": 242, + "truncated": false, + "block": 1, + "row": 8020 + }, + { + "path": "inference/raven_v1_3/runtime/data_loader/conform.py", + "sha256": "bcb6f2bbc00814e932f9d25199132490b8cba4d6cca3d947b85ce14790ea9d29", + "language": "Python", + "lines": 1669, + "truncated": false, + "block": 1, + "row": 9820 + }, + { + "path": "inference/raven_v1_3/runtime/data_loader/get_varying_maps.py", + "sha256": "cf866d118eb12fbd4cc382232213008de4982cec8a915f060541e9a87cfecd89", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 1, + "row": 5710 + }, + { + "path": "inference/raven_v1_3/runtime/data_loader/load_neuroimaging_data_final.py", + "sha256": "3b2e0bc47ed54c540eb4f1b11874afbbaf38d86dc391b06393c45e4adea7ee5e", + "language": "Python", + "lines": 1666, + "truncated": false, + "block": 1, + "row": 9828 + }, + { + "path": "inference/raven_v1_3/runtime/ldm/data/base.py", + "sha256": "4016b6242f78855179134781bd02cad9e843001623e3549f255103fd056de0b6", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 1, + "row": 5515 + }, + { + "path": "inference/raven_v1_3/runtime/ldm/data/imagenet.py", + "sha256": "0799471293f7c6c906b98014d13846062e833529ecfb377a8871bf7b602c1d6b", + "language": "Python", + "lines": 394, + "truncated": false, + "block": 1, + "row": 9055 + }, + { + "path": "inference/raven_v1_3/runtime/ldm/data/lsun.py", + "sha256": "654355d9c1d3a9420dd3b36f39a1ec4a1f0f61334109aa2162d9d8e8acd3d3b7", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 1, + "row": 6881 + }, + { + "path": "inference/raven_v1_3/runtime/ldm/lr_scheduler.py", + "sha256": "6af592fcfcf975dde43bea71c8f0fc58b9949f5a9a381d6a819b21eee82104f6", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 1, + "row": 7091 + }, + { + "path": "inference/raven_v1_3/runtime/ldm/models/autoencoder.py", + "sha256": "8ba30483454b431e0642c229f286fe387c60130c26516cd392594186f9b4a4e5", + "language": "Python", + "lines": 443, + "truncated": false, + "block": 1, + "row": 9200 + }, + { + "path": "inference/raven_v1_3/runtime/ldm/models/diffusion/classifier.py", + "sha256": "b84a1bd36b83ddd13c36f92d865b025b6556f11efe4a0321fd5a85fffe9fdf7e", + "language": "Python", + "lines": 267, + "truncated": false, + "block": 1, + "row": 8539 + }, + { + "path": "inference/raven_v1_3/runtime/ldm/models/diffusion/ddim.py", + "sha256": "3086330c774355809af6c4ce02220a01811187a01a7d0be5cc914c4ac07e4a48", + "language": "Python", + "lines": 203, + "truncated": false, + "block": 1, + "row": 8621 + }, + { + "path": "inference/raven_v1_3/runtime/ldm/models/diffusion/ddpm.py", + "sha256": "e5c085c54758952a13540fb69e9b7a6dccb46ae420c6bb2c589c51afab64013e", + "language": "Python", + "lines": 1445, + "truncated": false, + "block": 1, + "row": 9825 + }, + { + "path": "inference/raven_v1_3/runtime/ldm/models/diffusion/plms.py", + "sha256": "e26c70c1389454fa96a7fd5144a240e8e4044043f44b85c1e322c8e429d2e40e", + "language": "Python", + "lines": 236, + "truncated": false, + "block": 1, + "row": 8806 + }, + { + "path": "inference/raven_v1_3/runtime/ldm/modules/attention.py", + "sha256": "012198f441427ef892da0b6efc5ea9fae8e414aefcc65504577b41c2afd3526e", + "language": "Python", + "lines": 261, + "truncated": false, + "block": 1, + "row": 8265 + }, + { + "path": "inference/raven_v1_3/runtime/ldm/modules/diffusionmodules/model.py", + "sha256": "043ff43c4d4304f7259419d1bd4529445da71661b5362653ecd174bd4342c413", + "language": "Python", + "lines": 835, + "truncated": false, + "block": 1, + "row": 9659 + }, + { + "path": "inference/raven_v1_3/runtime/ldm/modules/diffusionmodules/openaimodel.py", + "sha256": "92e0c23ada849f532be12d9be2ebcddd98d3b040aa366981ac5f06c96d53b6af", + "language": "Python", + "lines": 961, + "truncated": false, + "block": 1, + "row": 9677 + }, + { + "path": "inference/raven_v1_3/runtime/ldm/modules/diffusionmodules/util.py", + "sha256": "5dd19ed7536cc9095ab5d3ca4c09bde5283c0779207a1aa019c05565a2502dca", + "language": "Python", + "lines": 267, + "truncated": false, + "block": 1, + "row": 8426 + }, + { + "path": "inference/raven_v1_3/runtime/ldm/modules/distributions/distributions.py", + "sha256": "52cd0b186a667898c52bec1a03eb5cba560a565377069f37b0fd82e1023a3788", + "language": "Python", + "lines": 156, + "truncated": false, + "block": 1, + "row": 7626 + }, + { + "path": "inference/raven_v1_3/runtime/ldm/modules/ema.py", + "sha256": "96cf170a9d7b49c846990694a0abef039e2046d934d37f7a219015ccc0da4e1b", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 1, + "row": 6745 + }, + { + "path": "inference/raven_v1_3/runtime/ldm/modules/encoders/modules.py", + "sha256": "af126f268be34661bd7e13561325186e2d7d975879f5c976a7b088220635e4c3", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 1, + "row": 7927 + }, + { + "path": "inference/raven_v1_3/runtime/ldm/modules/image_degradation/__init__.py", + "sha256": "ae046f3b956e9aedba1096ac76946980edebb805504bf611b505ca411528b26f", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 1, + "row": 5158 + }, + { + "path": "inference/raven_v1_3/runtime/ldm/modules/image_degradation/bsrgan.py", + "sha256": "57e940e89a21ddba9f1e0c12ddd34c0c0811320f594eb7cf2910d1d7b049a955", + "language": "Python", + "lines": 730, + "truncated": false, + "block": 1, + "row": 9489 + }, + { + "path": "inference/raven_v1_3/runtime/ldm/modules/image_degradation/bsrgan_light.py", + "sha256": "f301f605d3f5303fd9927eb020c7138c78c5eb4b0af1d220a4d6721ab2fa19b9", + "language": "Python", + "lines": 650, + "truncated": false, + "block": 1, + "row": 9403 + }, + { + "path": "inference/raven_v1_3/runtime/ldm/modules/image_degradation/utils_image.py", + "sha256": "e7deb515ef7c1f2bf80d28485eeeb0c4e2b8767fa5f68309c7c83ec752fa512b", + "language": "Python", + "lines": 916, + "truncated": false, + "block": 1, + "row": 9582 + }, + { + "path": "inference/raven_v1_3/runtime/ldm/modules/losses/__init__.py", + "sha256": "7254a0702a67d5e374b51335eaaa76e2e8af2cc5dd4da249b25adb3e06f718f6", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 5036 + }, + { + "path": "inference/raven_v1_3/runtime/ldm/modules/losses/contperceptual.py", + "sha256": "27ab6d598ce421d1ed81ccc3bd623d8c6c48fdee4d37b6cf198d9ae3d2d284fa", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 1, + "row": 7599 + }, + { + "path": "inference/raven_v1_3/runtime/ldm/modules/losses/vqperceptual.py", + "sha256": "9905d89ea41bc366f5e451e2f835a0c0d49bed79e3d3e2c6edc83837320de093", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 1, + "row": 8145 + }, + { + "path": "inference/raven_v1_3/runtime/ldm/modules/x_transformer.py", + "sha256": "e1471ac666f662ba537df9a2df9554e91768e5016f36a32e55ba6058b89aecc9", + "language": "Python", + "lines": 641, + "truncated": false, + "block": 1, + "row": 9332 + }, + { + "path": "inference/raven_v1_3/runtime/ldm/util.py", + "sha256": "5ed0d2cf71ecb6e8c2b8db0d275e11a9767d937bbcc745d754b36593d11eed05", + "language": "Python", + "lines": 203, + "truncated": false, + "block": 1, + "row": 7668 + }, + { + "path": "inference/raven_v1_3/runtime/main_hdf5.py", + "sha256": "28e4fd6bc2b34689b5f074c1461e27ac777d60772bf2f7cd7949547e34db7f4e", + "language": "Python", + "lines": 638, + "truncated": false, + "block": 1, + "row": 9435 + }, + { + "path": "inference/raven_v1_3/runtime/setup.py", + "sha256": "621d638274b584e5653ee4c2eaf161e44e21c204627b6b5d82d71eafc7fed259", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 1, + "row": 5210 + }, + { + "path": "inference/raven_v1_3/runtime/taming/data/ade20k.py", + "sha256": "dbfebbb30dacd40060c742b9cbd8b83db71d55f9b05cfdb91189f72a62ce821d", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 1, + "row": 7548 + }, + { + "path": "inference/raven_v1_3/runtime/taming/data/annotated_objects_coco.py", + "sha256": "17ba4b97538f1b67c786562732ffc0f9bb2c327aeafbfb63c08d2a34c2d915c0", + "language": "Python", + "lines": 139, + "truncated": false, + "block": 1, + "row": 7658 + }, + { + "path": "inference/raven_v1_3/runtime/taming/data/annotated_objects_dataset.py", + "sha256": "5b6eb978ae314d62caa43947e0069336a6f2fe9a7e9e4ff8f49c3810f26689b5", + "language": "Python", + "lines": 218, + "truncated": false, + "block": 1, + "row": 8536 + }, + { + "path": "inference/raven_v1_3/runtime/taming/data/annotated_objects_open_images.py", + "sha256": "bee0d5f5a4541e62ff353eea2ac40e7f92cf0930a254b00acb606aefedb62772", + "language": "Python", + "lines": 137, + "truncated": false, + "block": 1, + "row": 7772 + }, + { + "path": "inference/raven_v1_3/runtime/taming/data/base.py", + "sha256": "9b58ada3f5530a77fa9d4805175962799cf7ec483e01fff4f208db0ea697d54e", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 1, + "row": 6582 + }, + { + "path": "inference/raven_v1_3/runtime/taming/data/coco.py", + "sha256": "85865bb0fbfa777c39fa45d7f870a88f962fd81107d13afeb9fc29542235c442", + "language": "Python", + "lines": 176, + "truncated": false, + "block": 1, + "row": 8177 + }, + { + "path": "inference/raven_v1_3/runtime/taming/data/conditional_builder/objects_bbox.py", + "sha256": "0bd33ded22e5456843b8c07f1c2059205a98aa7e463cfc808ebcdcf6a7bf9f76", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 1, + "row": 6855 + }, + { + "path": "inference/raven_v1_3/runtime/taming/data/conditional_builder/objects_center_points.py", + "sha256": "b60ac5b3346f8692c1eee66be88b536e94656b691e6b4b71e4c07a035a975cc1", + "language": "Python", + "lines": 168, + "truncated": false, + "block": 1, + "row": 8188 + }, + { + "path": "inference/raven_v1_3/runtime/taming/data/conditional_builder/utils.py", + "sha256": "18b0b10ee9e3bf12ffec8c41f0b1fb3948acb095a84aff4b187683bbd6797a0d", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 1, + "row": 7119 + }, + { + "path": "inference/raven_v1_3/runtime/taming/data/custom.py", + "sha256": "e3ecd94b15c1600ecf79288e9db6d61fbaa13e0bc2360ffde0b089cf087cc694", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 1, + "row": 5714 + }, + { + "path": "inference/raven_v1_3/runtime/taming/data/faceshq.py", + "sha256": "8b9c29aa15412cf37f0e5407ab8c7825c7d203f41474822d9dc2b59ec063ebc5", + "language": "Python", + "lines": 134, + "truncated": false, + "block": 1, + "row": 7339 + }, + { + "path": "inference/raven_v1_3/runtime/taming/data/helper_types.py", + "sha256": "d9203e4e4d39b237157de183a2d2bdcfb1c4842aa15317ddc4253aa35230cabd", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 1, + "row": 5928 + }, + { + "path": "inference/raven_v1_3/runtime/taming/data/image_transforms.py", + "sha256": "b7cb76a49d0b39df2371c203ec79e1363d53072ac096107bf98cb9edba26a9d3", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 1, + "row": 7300 + }, + { + "path": "inference/raven_v1_3/runtime/taming/data/imagenet.py", + "sha256": "f98d4feeb4754e5789136eedd08adbbf7ceb1a0c57603c7839255ba5739208eb", + "language": "Python", + "lines": 558, + "truncated": false, + "block": 1, + "row": 9354 + }, + { + "path": "inference/raven_v1_3/runtime/taming/data/open_images_helper.py", + "sha256": "c3f25ae759f8d7a9c3a26d81e06006f43c7c73e0d1c39699f6b97d9054070f65", + "language": "Python", + "lines": 379, + "truncated": false, + "block": 1, + "row": 8340 + }, + { + "path": "inference/raven_v1_3/runtime/taming/data/sflckr.py", + "sha256": "db9161e5b39ce809b358254efac5af6ec51f563e69f0d53f1ce28f9d50192c97", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 1, + "row": 7166 + }, + { + "path": "inference/raven_v1_3/runtime/taming/data/utils.py", + "sha256": "89c785fd9adfc8355357ec62cb2da2677d39ea3d93fee5f24e4a8c5293694a61", + "language": "Python", + "lines": 810, + "truncated": false, + "block": 1, + "row": 9656 + }, + { + "path": "inference/raven_v1_3/runtime/taming/fsdp_setup.py", + "sha256": "af820d608e76aa3c700c84f9a5752ec29a65c2ec425064e44953b903dbf388bf", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 1, + "row": 6239 + }, + { + "path": "inference/raven_v1_3/runtime/taming/lr_scheduler.py", + "sha256": "b639ed00d137235ae6b7e9a1b9d0e4df0f515e23f384ed9cdfe8dd7b477f673e", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 1, + "row": 5837 + }, + { + "path": "inference/raven_v1_3/runtime/taming/models/autoencoders.py", + "sha256": "43dd3f551346e0754abc0a087077446d024e3a3001301206f1ae4f7426879dd5", + "language": "Python", + "lines": 4418, + "truncated": true, + "block": 1, + "row": 9882 + }, + { + "path": "inference/raven_v1_3/runtime/taming/models/cond_transformer.py", + "sha256": "7edaec5d4f1c9b0c908c21fc91f23b96d96856626dcc82b70b5f616fe66b7db7", + "language": "Python", + "lines": 352, + "truncated": false, + "block": 1, + "row": 9064 + }, + { + "path": "inference/raven_v1_3/runtime/taming/models/dummy_cond_stage.py", + "sha256": "962a9c7dc75ba78840730ad14e490fd4f7da1310d4d46dd47aeca1aef29b8e25", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 1, + "row": 5325 + }, + { + "path": "inference/raven_v1_3/runtime/taming/models/mri_autoencoders.py", + "sha256": "034c628dad86cc9d41c209e80fda2b07a9acea7ad1b3a9ab5e315ae45fa32f56", + "language": "Python", + "lines": 243, + "truncated": false, + "block": 1, + "row": 8477 + }, + { + "path": "inference/raven_v1_3/runtime/taming/models/vqgan.py", + "sha256": "7a08f309757c5c6ceb7023062c4a18c1aaedeb4635446d0627240dd175c233fe", + "language": "Python", + "lines": 816, + "truncated": false, + "block": 1, + "row": 9699 + }, + { + "path": "inference/raven_v1_3/runtime/taming/modules/diffusionmodules/model.py", + "sha256": "5bef7bcc246b356986d73236e61c149552e8e2970b689ab580bd94668fb8c2ed", + "language": "Python", + "lines": 2743, + "truncated": false, + "block": 1, + "row": 9866 + }, + { + "path": "inference/raven_v1_3/runtime/taming/modules/diffusionmodules/model2.py", + "sha256": "9ff8c3b6b3a213cf9af901eaf68c4e81a7e306425a850999020fe3ccdc9643a4", + "language": "Python", + "lines": 2571, + "truncated": false, + "block": 1, + "row": 9861 + }, + { + "path": "inference/raven_v1_3/runtime/taming/modules/discriminator/model.py", + "sha256": "06bbf5e897b7093b6bdffd084d729f70ed1ea6477551b4806ba86abedfe32f51", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 1, + "row": 7500 + }, + { + "path": "inference/raven_v1_3/runtime/taming/modules/losses/__init__.py", + "sha256": "ff96415f613e64a1ba704a436b21ffcd46cfa2c81321c24204563df39019686f", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 1, + "row": 5024 + }, + { + "path": "inference/raven_v1_3/runtime/taming/modules/losses/contperceptual.py", + "sha256": "5c9f56ef853d385877eb612fd845159a14f7d9290ae7dbcfaa1eea150357a084", + "language": "Python", + "lines": 3460, + "truncated": false, + "block": 1, + "row": 9877 + }, + { + "path": "inference/raven_v1_3/runtime/taming/modules/losses/lpips.py", + "sha256": "205f7d6dd3839a5d09bd667b9279b0cda7c0a5df348783e2c0f213a5d9cb3b49", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 1, + "row": 7606 + }, + { + "path": "inference/raven_v1_3/runtime/taming/modules/losses/segmentation.py", + "sha256": "677f5115b24e7d1f7e9fa784cfb4aaf6cf155335bca3ad6d1ad29e8927102b12", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 1, + "row": 5592 + }, + { + "path": "inference/raven_v1_3/runtime/taming/modules/losses/vqperceptual.py", + "sha256": "d94c1949c3e10d45b6c4deb241009da245b2a71ab4d86f943ae8ac0640d75e9b", + "language": "Python", + "lines": 315, + "truncated": false, + "block": 1, + "row": 9033 + }, + { + "path": "inference/raven_v1_3/runtime/taming/modules/misc/coord.py", + "sha256": "14fc6960e7764c89a76fe3729dabcbf6e15190bed4edbc9deab1f3f9edeb2ddd", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 1, + "row": 5656 + }, + { + "path": "inference/raven_v1_3/runtime/taming/modules/transformer/mingpt.py", + "sha256": "e5359ed032681e4de8460f6e5a5b5f911cff3504c37ae7adb415e2aecd85254a", + "language": "Python", + "lines": 415, + "truncated": false, + "block": 1, + "row": 9151 + }, + { + "path": "inference/raven_v1_3/runtime/taming/modules/transformer/permuter.py", + "sha256": "a70700c6ea3c5e14630ca49bea85ee1f737038a584eb90467e6f9fffae584f29", + "language": "Python", + "lines": 248, + "truncated": false, + "block": 1, + "row": 7979 + }, + { + "path": "inference/raven_v1_3/runtime/taming/modules/util.py", + "sha256": "ca8e4aea31984683d85c4ccd05a4145c02257660d6ebef1bb0b87c91422cd0fe", + "language": "Python", + "lines": 219, + "truncated": false, + "block": 1, + "row": 7993 + }, + { + "path": "inference/raven_v1_3/runtime/taming/modules/vqvae/quantize.py", + "sha256": "3ef2302edb73fda9e462066224caa61569bd3ec09aeaa41ff38c66fe877393eb", + "language": "Python", + "lines": 591, + "truncated": false, + "block": 1, + "row": 9468 + }, + { + "path": "inference/raven_v1_3/runtime/taming/util.py", + "sha256": "1cfca04205f0b647da271809c3011b0f0c2fc920e1e847c79b270ee138f9de02", + "language": "Python", + "lines": 157, + "truncated": false, + "block": 1, + "row": 7374 + }, + { + "path": "inference/raven_v1_3/runtime/utils_v2.py", + "sha256": "77431766bd1ea071c9a856eeb980dd7f265947dec139a50f36b2eff6a2aedd1a", + "language": "Python", + "lines": 913, + "truncated": false, + "block": 1, + "row": 9751 + }, + { + "path": "inference_runtime/autoencoder_eval_3D_patches_v18_cpuaware_cascade.py", + "sha256": "c486a31fe301d3dc051dca53d8ecf744be15640cd23831c8b3b96c9d1e1d698e", + "language": "Python", + "lines": 1759, + "truncated": false, + "block": 1, + "row": 9831 + }, + { + "path": "inference_runtime/data_loader/__init__.py", + "sha256": "7ada44de914c33bd7e80cab85c5564fe1156015b954be52082871dd338acd61d", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5051 + }, + { + "path": "inference_runtime/data_loader/augmentation.py", + "sha256": "31cbc3445339a7a4e33c56d601f4c5f1e8774a37c1639f46bb4d23a2b07e4fe0", + "language": "Python", + "lines": 133, + "truncated": false, + "block": 1, + "row": 7005 + }, + { + "path": "inference_runtime/data_loader/checkpoints.py", + "sha256": "724dd93c7432c48236cd8181b7e5690c0bcedf1b97b2f66dad2ace3e5c48c74a", + "language": "Python", + "lines": 83, + "truncated": false, + "block": 1, + "row": 6738 + }, + { + "path": "inference_runtime/data_loader/common.py", + "sha256": "5bd2e958f44ba959f4be1296a33284549e4e84c28cace2abc9802190321bfe9b", + "language": "Python", + "lines": 242, + "truncated": false, + "block": 1, + "row": 8020 + }, + { + "path": "inference_runtime/data_loader/conform.py", + "sha256": "bcb6f2bbc00814e932f9d25199132490b8cba4d6cca3d947b85ce14790ea9d29", + "language": "Python", + "lines": 1669, + "truncated": false, + "block": 1, + "row": 9820 + }, + { + "path": "inference_runtime/data_loader/get_varying_maps.py", + "sha256": "cf866d118eb12fbd4cc382232213008de4982cec8a915f060541e9a87cfecd89", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 1, + "row": 5710 + }, + { + "path": "inference_runtime/data_loader/load_neuroimaging_data_final.py", + "sha256": "3b2e0bc47ed54c540eb4f1b11874afbbaf38d86dc391b06393c45e4adea7ee5e", + "language": "Python", + "lines": 1666, + "truncated": false, + "block": 1, + "row": 9828 + }, + { + "path": "inference_runtime/ldm/data/base.py", + "sha256": "4016b6242f78855179134781bd02cad9e843001623e3549f255103fd056de0b6", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 1, + "row": 5515 + }, + { + "path": "inference_runtime/ldm/data/imagenet.py", + "sha256": "0799471293f7c6c906b98014d13846062e833529ecfb377a8871bf7b602c1d6b", + "language": "Python", + "lines": 394, + "truncated": false, + "block": 1, + "row": 9055 + }, + { + "path": "inference_runtime/ldm/data/lsun.py", + "sha256": "654355d9c1d3a9420dd3b36f39a1ec4a1f0f61334109aa2162d9d8e8acd3d3b7", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 1, + "row": 6881 + }, + { + "path": "inference_runtime/ldm/lr_scheduler.py", + "sha256": "6af592fcfcf975dde43bea71c8f0fc58b9949f5a9a381d6a819b21eee82104f6", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 1, + "row": 7091 + }, + { + "path": "inference_runtime/ldm/models/autoencoder.py", + "sha256": "8ba30483454b431e0642c229f286fe387c60130c26516cd392594186f9b4a4e5", + "language": "Python", + "lines": 443, + "truncated": false, + "block": 1, + "row": 9200 + }, + { + "path": "inference_runtime/ldm/models/diffusion/classifier.py", + "sha256": "b84a1bd36b83ddd13c36f92d865b025b6556f11efe4a0321fd5a85fffe9fdf7e", + "language": "Python", + "lines": 267, + "truncated": false, + "block": 1, + "row": 8539 + }, + { + "path": "inference_runtime/ldm/models/diffusion/ddim.py", + "sha256": "3086330c774355809af6c4ce02220a01811187a01a7d0be5cc914c4ac07e4a48", + "language": "Python", + "lines": 203, + "truncated": false, + "block": 1, + "row": 8621 + }, + { + "path": "inference_runtime/ldm/models/diffusion/ddpm.py", + "sha256": "e5c085c54758952a13540fb69e9b7a6dccb46ae420c6bb2c589c51afab64013e", + "language": "Python", + "lines": 1445, + "truncated": false, + "block": 1, + "row": 9825 + }, + { + "path": "inference_runtime/ldm/models/diffusion/plms.py", + "sha256": "e26c70c1389454fa96a7fd5144a240e8e4044043f44b85c1e322c8e429d2e40e", + "language": "Python", + "lines": 236, + "truncated": false, + "block": 1, + "row": 8806 + }, + { + "path": "inference_runtime/ldm/modules/attention.py", + "sha256": "012198f441427ef892da0b6efc5ea9fae8e414aefcc65504577b41c2afd3526e", + "language": "Python", + "lines": 261, + "truncated": false, + "block": 1, + "row": 8265 + }, + { + "path": "inference_runtime/ldm/modules/diffusionmodules/model.py", + "sha256": "043ff43c4d4304f7259419d1bd4529445da71661b5362653ecd174bd4342c413", + "language": "Python", + "lines": 835, + "truncated": false, + "block": 1, + "row": 9659 + }, + { + "path": "inference_runtime/ldm/modules/diffusionmodules/openaimodel.py", + "sha256": "92e0c23ada849f532be12d9be2ebcddd98d3b040aa366981ac5f06c96d53b6af", + "language": "Python", + "lines": 961, + "truncated": false, + "block": 1, + "row": 9677 + }, + { + "path": "inference_runtime/ldm/modules/diffusionmodules/util.py", + "sha256": "5dd19ed7536cc9095ab5d3ca4c09bde5283c0779207a1aa019c05565a2502dca", + "language": "Python", + "lines": 267, + "truncated": false, + "block": 1, + "row": 8426 + }, + { + "path": "inference_runtime/ldm/modules/distributions/distributions.py", + "sha256": "52cd0b186a667898c52bec1a03eb5cba560a565377069f37b0fd82e1023a3788", + "language": "Python", + "lines": 156, + "truncated": false, + "block": 1, + "row": 7626 + }, + { + "path": "inference_runtime/ldm/modules/ema.py", + "sha256": "96cf170a9d7b49c846990694a0abef039e2046d934d37f7a219015ccc0da4e1b", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 1, + "row": 6745 + }, + { + "path": "inference_runtime/ldm/modules/encoders/modules.py", + "sha256": "af126f268be34661bd7e13561325186e2d7d975879f5c976a7b088220635e4c3", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 1, + "row": 7927 + }, + { + "path": "inference_runtime/ldm/modules/image_degradation/__init__.py", + "sha256": "ae046f3b956e9aedba1096ac76946980edebb805504bf611b505ca411528b26f", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 1, + "row": 5158 + }, + { + "path": "inference_runtime/ldm/modules/image_degradation/bsrgan.py", + "sha256": "57e940e89a21ddba9f1e0c12ddd34c0c0811320f594eb7cf2910d1d7b049a955", + "language": "Python", + "lines": 730, + "truncated": false, + "block": 1, + "row": 9489 + }, + { + "path": "inference_runtime/ldm/modules/image_degradation/bsrgan_light.py", + "sha256": "f301f605d3f5303fd9927eb020c7138c78c5eb4b0af1d220a4d6721ab2fa19b9", + "language": "Python", + "lines": 650, + "truncated": false, + "block": 1, + "row": 9403 + }, + { + "path": "inference_runtime/ldm/modules/image_degradation/utils_image.py", + "sha256": "e7deb515ef7c1f2bf80d28485eeeb0c4e2b8767fa5f68309c7c83ec752fa512b", + "language": "Python", + "lines": 916, + "truncated": false, + "block": 1, + "row": 9582 + }, + { + "path": "inference_runtime/ldm/modules/losses/__init__.py", + "sha256": "7254a0702a67d5e374b51335eaaa76e2e8af2cc5dd4da249b25adb3e06f718f6", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 5036 + }, + { + "path": "inference_runtime/ldm/modules/losses/contperceptual.py", + "sha256": "27ab6d598ce421d1ed81ccc3bd623d8c6c48fdee4d37b6cf198d9ae3d2d284fa", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 1, + "row": 7599 + }, + { + "path": "inference_runtime/ldm/modules/losses/vqperceptual.py", + "sha256": "9905d89ea41bc366f5e451e2f835a0c0d49bed79e3d3e2c6edc83837320de093", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 1, + "row": 8145 + }, + { + "path": "inference_runtime/ldm/modules/x_transformer.py", + "sha256": "e1471ac666f662ba537df9a2df9554e91768e5016f36a32e55ba6058b89aecc9", + "language": "Python", + "lines": 641, + "truncated": false, + "block": 1, + "row": 9332 + }, + { + "path": "inference_runtime/ldm/util.py", + "sha256": "5ed0d2cf71ecb6e8c2b8db0d275e11a9767d937bbcc745d754b36593d11eed05", + "language": "Python", + "lines": 203, + "truncated": false, + "block": 1, + "row": 7668 + }, + { + "path": "inference_runtime/main_hdf5.py", + "sha256": "28e4fd6bc2b34689b5f074c1461e27ac777d60772bf2f7cd7949547e34db7f4e", + "language": "Python", + "lines": 638, + "truncated": false, + "block": 1, + "row": 9435 + }, + { + "path": "inference_runtime/setup.py", + "sha256": "621d638274b584e5653ee4c2eaf161e44e21c204627b6b5d82d71eafc7fed259", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 1, + "row": 5210 + }, + { + "path": "inference_runtime/taming/data/ade20k.py", + "sha256": "dbfebbb30dacd40060c742b9cbd8b83db71d55f9b05cfdb91189f72a62ce821d", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 1, + "row": 7548 + }, + { + "path": "inference_runtime/taming/data/annotated_objects_coco.py", + "sha256": "17ba4b97538f1b67c786562732ffc0f9bb2c327aeafbfb63c08d2a34c2d915c0", + "language": "Python", + "lines": 139, + "truncated": false, + "block": 1, + "row": 7658 + }, + { + "path": "inference_runtime/taming/data/annotated_objects_dataset.py", + "sha256": "5b6eb978ae314d62caa43947e0069336a6f2fe9a7e9e4ff8f49c3810f26689b5", + "language": "Python", + "lines": 218, + "truncated": false, + "block": 1, + "row": 8536 + }, + { + "path": "inference_runtime/taming/data/annotated_objects_open_images.py", + "sha256": "bee0d5f5a4541e62ff353eea2ac40e7f92cf0930a254b00acb606aefedb62772", + "language": "Python", + "lines": 137, + "truncated": false, + "block": 1, + "row": 7772 + }, + { + "path": "inference_runtime/taming/data/base.py", + "sha256": "9b58ada3f5530a77fa9d4805175962799cf7ec483e01fff4f208db0ea697d54e", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 1, + "row": 6582 + }, + { + "path": "inference_runtime/taming/data/coco.py", + "sha256": "85865bb0fbfa777c39fa45d7f870a88f962fd81107d13afeb9fc29542235c442", + "language": "Python", + "lines": 176, + "truncated": false, + "block": 1, + "row": 8177 + }, + { + "path": "inference_runtime/taming/data/conditional_builder/objects_bbox.py", + "sha256": "0bd33ded22e5456843b8c07f1c2059205a98aa7e463cfc808ebcdcf6a7bf9f76", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 1, + "row": 6855 + }, + { + "path": "inference_runtime/taming/data/conditional_builder/objects_center_points.py", + "sha256": "b60ac5b3346f8692c1eee66be88b536e94656b691e6b4b71e4c07a035a975cc1", + "language": "Python", + "lines": 168, + "truncated": false, + "block": 1, + "row": 8188 + }, + { + "path": "inference_runtime/taming/data/conditional_builder/utils.py", + "sha256": "18b0b10ee9e3bf12ffec8c41f0b1fb3948acb095a84aff4b187683bbd6797a0d", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 1, + "row": 7119 + }, + { + "path": "inference_runtime/taming/data/custom.py", + "sha256": "e3ecd94b15c1600ecf79288e9db6d61fbaa13e0bc2360ffde0b089cf087cc694", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 1, + "row": 5714 + }, + { + "path": "inference_runtime/taming/data/faceshq.py", + "sha256": "8b9c29aa15412cf37f0e5407ab8c7825c7d203f41474822d9dc2b59ec063ebc5", + "language": "Python", + "lines": 134, + "truncated": false, + "block": 1, + "row": 7339 + }, + { + "path": "inference_runtime/taming/data/helper_types.py", + "sha256": "d9203e4e4d39b237157de183a2d2bdcfb1c4842aa15317ddc4253aa35230cabd", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 1, + "row": 5928 + }, + { + "path": "inference_runtime/taming/data/image_transforms.py", + "sha256": "b7cb76a49d0b39df2371c203ec79e1363d53072ac096107bf98cb9edba26a9d3", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 1, + "row": 7300 + }, + { + "path": "inference_runtime/taming/data/imagenet.py", + "sha256": "f98d4feeb4754e5789136eedd08adbbf7ceb1a0c57603c7839255ba5739208eb", + "language": "Python", + "lines": 558, + "truncated": false, + "block": 1, + "row": 9354 + }, + { + "path": "inference_runtime/taming/data/open_images_helper.py", + "sha256": "c3f25ae759f8d7a9c3a26d81e06006f43c7c73e0d1c39699f6b97d9054070f65", + "language": "Python", + "lines": 379, + "truncated": false, + "block": 1, + "row": 8340 + }, + { + "path": "inference_runtime/taming/data/sflckr.py", + "sha256": "db9161e5b39ce809b358254efac5af6ec51f563e69f0d53f1ce28f9d50192c97", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 1, + "row": 7166 + }, + { + "path": "inference_runtime/taming/data/utils.py", + "sha256": "89c785fd9adfc8355357ec62cb2da2677d39ea3d93fee5f24e4a8c5293694a61", + "language": "Python", + "lines": 810, + "truncated": false, + "block": 1, + "row": 9656 + }, + { + "path": "inference_runtime/taming/fsdp_setup.py", + "sha256": "af820d608e76aa3c700c84f9a5752ec29a65c2ec425064e44953b903dbf388bf", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 1, + "row": 6239 + }, + { + "path": "inference_runtime/taming/lr_scheduler.py", + "sha256": "b639ed00d137235ae6b7e9a1b9d0e4df0f515e23f384ed9cdfe8dd7b477f673e", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 1, + "row": 5837 + }, + { + "path": "inference_runtime/taming/models/autoencoders.py", + "sha256": "43dd3f551346e0754abc0a087077446d024e3a3001301206f1ae4f7426879dd5", + "language": "Python", + "lines": 4418, + "truncated": true, + "block": 1, + "row": 9882 + }, + { + "path": "inference_runtime/taming/models/cond_transformer.py", + "sha256": "7edaec5d4f1c9b0c908c21fc91f23b96d96856626dcc82b70b5f616fe66b7db7", + "language": "Python", + "lines": 352, + "truncated": false, + "block": 1, + "row": 9064 + }, + { + "path": "inference_runtime/taming/models/dummy_cond_stage.py", + "sha256": "962a9c7dc75ba78840730ad14e490fd4f7da1310d4d46dd47aeca1aef29b8e25", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 1, + "row": 5325 + }, + { + "path": "inference_runtime/taming/models/mri_autoencoders.py", + "sha256": "034c628dad86cc9d41c209e80fda2b07a9acea7ad1b3a9ab5e315ae45fa32f56", + "language": "Python", + "lines": 243, + "truncated": false, + "block": 1, + "row": 8477 + }, + { + "path": "inference_runtime/taming/models/vqgan.py", + "sha256": "7a08f309757c5c6ceb7023062c4a18c1aaedeb4635446d0627240dd175c233fe", + "language": "Python", + "lines": 816, + "truncated": false, + "block": 1, + "row": 9699 + }, + { + "path": "inference_runtime/taming/modules/diffusionmodules/model.py", + "sha256": "5bef7bcc246b356986d73236e61c149552e8e2970b689ab580bd94668fb8c2ed", + "language": "Python", + "lines": 2743, + "truncated": false, + "block": 1, + "row": 9866 + }, + { + "path": "inference_runtime/taming/modules/diffusionmodules/model2.py", + "sha256": "9ff8c3b6b3a213cf9af901eaf68c4e81a7e306425a850999020fe3ccdc9643a4", + "language": "Python", + "lines": 2571, + "truncated": false, + "block": 1, + "row": 9861 + }, + { + "path": "inference_runtime/taming/modules/discriminator/model.py", + "sha256": "06bbf5e897b7093b6bdffd084d729f70ed1ea6477551b4806ba86abedfe32f51", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 1, + "row": 7500 + }, + { + "path": "inference_runtime/taming/modules/losses/__init__.py", + "sha256": "ff96415f613e64a1ba704a436b21ffcd46cfa2c81321c24204563df39019686f", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 1, + "row": 5024 + }, + { + "path": "inference_runtime/taming/modules/losses/contperceptual.py", + "sha256": "5c9f56ef853d385877eb612fd845159a14f7d9290ae7dbcfaa1eea150357a084", + "language": "Python", + "lines": 3460, + "truncated": false, + "block": 1, + "row": 9877 + }, + { + "path": "inference_runtime/taming/modules/losses/lpips.py", + "sha256": "205f7d6dd3839a5d09bd667b9279b0cda7c0a5df348783e2c0f213a5d9cb3b49", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 1, + "row": 7606 + }, + { + "path": "inference_runtime/taming/modules/losses/segmentation.py", + "sha256": "677f5115b24e7d1f7e9fa784cfb4aaf6cf155335bca3ad6d1ad29e8927102b12", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 1, + "row": 5592 + }, + { + "path": "inference_runtime/taming/modules/losses/vqperceptual.py", + "sha256": "d94c1949c3e10d45b6c4deb241009da245b2a71ab4d86f943ae8ac0640d75e9b", + "language": "Python", + "lines": 315, + "truncated": false, + "block": 1, + "row": 9033 + }, + { + "path": "inference_runtime/taming/modules/misc/coord.py", + "sha256": "14fc6960e7764c89a76fe3729dabcbf6e15190bed4edbc9deab1f3f9edeb2ddd", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 1, + "row": 5656 + }, + { + "path": "inference_runtime/taming/modules/transformer/mingpt.py", + "sha256": "e5359ed032681e4de8460f6e5a5b5f911cff3504c37ae7adb415e2aecd85254a", + "language": "Python", + "lines": 415, + "truncated": false, + "block": 1, + "row": 9151 + }, + { + "path": "inference_runtime/taming/modules/transformer/permuter.py", + "sha256": "a70700c6ea3c5e14630ca49bea85ee1f737038a584eb90467e6f9fffae584f29", + "language": "Python", + "lines": 248, + "truncated": false, + "block": 1, + "row": 7979 + }, + { + "path": "inference_runtime/taming/modules/util.py", + "sha256": "ca8e4aea31984683d85c4ccd05a4145c02257660d6ebef1bb0b87c91422cd0fe", + "language": "Python", + "lines": 219, + "truncated": false, + "block": 1, + "row": 7993 + }, + { + "path": "inference_runtime/taming/modules/vqvae/quantize.py", + "sha256": "3ef2302edb73fda9e462066224caa61569bd3ec09aeaa41ff38c66fe877393eb", + "language": "Python", + "lines": 591, + "truncated": false, + "block": 1, + "row": 9468 + }, + { + "path": "inference_runtime/taming/util.py", + "sha256": "1cfca04205f0b647da271809c3011b0f0c2fc920e1e847c79b270ee138f9de02", + "language": "Python", + "lines": 157, + "truncated": false, + "block": 1, + "row": 7374 + }, + { + "path": "inference_runtime/utils_v2.py", + "sha256": "77431766bd1ea071c9a856eeb980dd7f265947dec139a50f36b2eff6a2aedd1a", + "language": "Python", + "lines": 913, + "truncated": false, + "block": 1, + "row": 9751 + }, + { + "path": "jobs/legacy/submit_raven_f2_nfg32_nfd64_dw5e0_lpw2.0_l1w0.0_lrgtod0.05_3dlpips_AEv5.sh", + "sha256": "b3d62452ea2b6ca7f82cad7b787fb8d437e3111d04d35f6cc2fc59025b0640b8", + "language": "Shell", + "lines": 22, + "truncated": false, + "block": 1, + "row": 11606 + }, + { + "path": "jobs/legacy/submit_raven_f2_nfg64_nfd64_dw1e-1_lpw2.0_l1w0.0_lrgtod0.5_3dlpips_AEv5_gan_finetune.sh", + "sha256": "271600b4754f0d7bc3f79bc42e9aa5b2ef44b3da76701229abe9a050c271f42e", + "language": "Shell", + "lines": 22, + "truncated": false, + "block": 1, + "row": 11610 + }, + { + "path": "jobs/legacy/submit_raven_f2_nfg64_nfd64_dw5e0_lpw2.0_l1w0.0_lrgtod0.05_3dlpips_AEv5.sh", + "sha256": "7b04ff879f385c50d8d210751f99b3916411056947d051059274f687e05ca32e", + "language": "Shell", + "lines": 22, + "truncated": false, + "block": 1, + "row": 11605 + }, + { + "path": "jobs/legacy/submit_raven_f2_nfg64_nfd64_dw5e0_lpw2.0_l1w0.0_lrgtod0.05_3dlpips_v2.sh", + "sha256": "5dc194efc1e6f1b65cc7a947f4d707b5131acd737cf003bac09d3a0d010e2034", + "language": "Shell", + "lines": 22, + "truncated": false, + "block": 1, + "row": 11584 + }, + { + "path": "jobs/legacy/submit_raven_f2_nfg64_nfd64_dw5e0_lpw2.0_l1w0.0_lrgtod0.5_3dlpips_AEv5.sh", + "sha256": "0f19f20bf3bf3aa7172c2cbfc5a69e0d589fddf9911ee7c2066cf5f31628cb5b", + "language": "Shell", + "lines": 22, + "truncated": false, + "block": 1, + "row": 11603 + }, + { + "path": "jobs/legacy/submit_raven_f2_nodegrade_nfg64_nfd64_dw5e0_lpw2.0_l1w0.0_lrgtod0.05_3dlpips_AEv5.sh", + "sha256": "90a62a43b9f09901c970f1548c8ca447c9d5226ef78a86b6d475b86cfe17873b", + "language": "Shell", + "lines": 22, + "truncated": false, + "block": 1, + "row": 11615 + }, + { + "path": "jobs/legacy/submit_raven_f4_nfg64_nfd64_dw5e0_lpw2.0_l1w0.0_lrgtod0.05_3dlpips_AEv5.sh", + "sha256": "bc85e676fadf0313d220cf7cf44e309fdac454056e0c4fa6b112637bec294515", + "language": "Shell", + "lines": 22, + "truncated": false, + "block": 1, + "row": 11607 + }, + { + "path": "jobs/legacy/submit_test_raven_f2_nfg64_nfd64_dw5e0_lpw2.0_l1w0.0_lrgtod0.05_3dlpips_AEv5.sh", + "sha256": "28999c09c97ffbf7a1fd12d8684b1eaa8fd678d3068b5163035cae15b2e23e99", + "language": "Shell", + "lines": 22, + "truncated": false, + "block": 1, + "row": 11586 + }, + { + "path": "ldm/data/base.py", + "sha256": "4016b6242f78855179134781bd02cad9e843001623e3549f255103fd056de0b6", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 1, + "row": 5515 + }, + { + "path": "ldm/data/imagenet.py", + "sha256": "0799471293f7c6c906b98014d13846062e833529ecfb377a8871bf7b602c1d6b", + "language": "Python", + "lines": 394, + "truncated": false, + "block": 1, + "row": 9055 + }, + { + "path": "ldm/data/lsun.py", + "sha256": "654355d9c1d3a9420dd3b36f39a1ec4a1f0f61334109aa2162d9d8e8acd3d3b7", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 1, + "row": 6881 + }, + { + "path": "ldm/lr_scheduler.py", + "sha256": "6af592fcfcf975dde43bea71c8f0fc58b9949f5a9a381d6a819b21eee82104f6", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 1, + "row": 7091 + }, + { + "path": "ldm/models/autoencoder.py", + "sha256": "8ba30483454b431e0642c229f286fe387c60130c26516cd392594186f9b4a4e5", + "language": "Python", + "lines": 443, + "truncated": false, + "block": 1, + "row": 9200 + }, + { + "path": "ldm/models/diffusion/classifier.py", + "sha256": "b84a1bd36b83ddd13c36f92d865b025b6556f11efe4a0321fd5a85fffe9fdf7e", + "language": "Python", + "lines": 267, + "truncated": false, + "block": 1, + "row": 8539 + }, + { + "path": "ldm/models/diffusion/ddim.py", + "sha256": "3086330c774355809af6c4ce02220a01811187a01a7d0be5cc914c4ac07e4a48", + "language": "Python", + "lines": 203, + "truncated": false, + "block": 1, + "row": 8621 + }, + { + "path": "ldm/models/diffusion/ddpm.py", + "sha256": "e5c085c54758952a13540fb69e9b7a6dccb46ae420c6bb2c589c51afab64013e", + "language": "Python", + "lines": 1445, + "truncated": false, + "block": 1, + "row": 9825 + }, + { + "path": "ldm/models/diffusion/plms.py", + "sha256": "e26c70c1389454fa96a7fd5144a240e8e4044043f44b85c1e322c8e429d2e40e", + "language": "Python", + "lines": 236, + "truncated": false, + "block": 1, + "row": 8806 + }, + { + "path": "ldm/modules/attention.py", + "sha256": "012198f441427ef892da0b6efc5ea9fae8e414aefcc65504577b41c2afd3526e", + "language": "Python", + "lines": 261, + "truncated": false, + "block": 1, + "row": 8265 + }, + { + "path": "ldm/modules/diffusionmodules/model.py", + "sha256": "043ff43c4d4304f7259419d1bd4529445da71661b5362653ecd174bd4342c413", + "language": "Python", + "lines": 835, + "truncated": false, + "block": 1, + "row": 9659 + }, + { + "path": "ldm/modules/diffusionmodules/openaimodel.py", + "sha256": "92e0c23ada849f532be12d9be2ebcddd98d3b040aa366981ac5f06c96d53b6af", + "language": "Python", + "lines": 961, + "truncated": false, + "block": 1, + "row": 9677 + }, + { + "path": "ldm/modules/diffusionmodules/util.py", + "sha256": "5dd19ed7536cc9095ab5d3ca4c09bde5283c0779207a1aa019c05565a2502dca", + "language": "Python", + "lines": 267, + "truncated": false, + "block": 1, + "row": 8426 + }, + { + "path": "ldm/modules/distributions/distributions.py", + "sha256": "52cd0b186a667898c52bec1a03eb5cba560a565377069f37b0fd82e1023a3788", + "language": "Python", + "lines": 156, + "truncated": false, + "block": 1, + "row": 7626 + }, + { + "path": "ldm/modules/ema.py", + "sha256": "96cf170a9d7b49c846990694a0abef039e2046d934d37f7a219015ccc0da4e1b", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 1, + "row": 6745 + }, + { + "path": "ldm/modules/encoders/modules.py", + "sha256": "af126f268be34661bd7e13561325186e2d7d975879f5c976a7b088220635e4c3", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 1, + "row": 7927 + }, + { + "path": "ldm/modules/image_degradation/__init__.py", + "sha256": "ae046f3b956e9aedba1096ac76946980edebb805504bf611b505ca411528b26f", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 1, + "row": 5158 + }, + { + "path": "ldm/modules/image_degradation/bsrgan.py", + "sha256": "57e940e89a21ddba9f1e0c12ddd34c0c0811320f594eb7cf2910d1d7b049a955", + "language": "Python", + "lines": 730, + "truncated": false, + "block": 1, + "row": 9489 + }, + { + "path": "ldm/modules/image_degradation/bsrgan_light.py", + "sha256": "f301f605d3f5303fd9927eb020c7138c78c5eb4b0af1d220a4d6721ab2fa19b9", + "language": "Python", + "lines": 650, + "truncated": false, + "block": 1, + "row": 9403 + }, + { + "path": "ldm/modules/image_degradation/utils_image.py", + "sha256": "e7deb515ef7c1f2bf80d28485eeeb0c4e2b8767fa5f68309c7c83ec752fa512b", + "language": "Python", + "lines": 916, + "truncated": false, + "block": 1, + "row": 9582 + }, + { + "path": "ldm/modules/losses/__init__.py", + "sha256": "7254a0702a67d5e374b51335eaaa76e2e8af2cc5dd4da249b25adb3e06f718f6", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 5036 + }, + { + "path": "ldm/modules/losses/contperceptual.py", + "sha256": "27ab6d598ce421d1ed81ccc3bd623d8c6c48fdee4d37b6cf198d9ae3d2d284fa", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 1, + "row": 7599 + }, + { + "path": "ldm/modules/losses/vqperceptual.py", + "sha256": "9905d89ea41bc366f5e451e2f835a0c0d49bed79e3d3e2c6edc83837320de093", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 1, + "row": 8145 + }, + { + "path": "ldm/modules/x_transformer.py", + "sha256": "e1471ac666f662ba537df9a2df9554e91768e5016f36a32e55ba6058b89aecc9", + "language": "Python", + "lines": 641, + "truncated": false, + "block": 1, + "row": 9332 + }, + { + "path": "ldm/util.py", + "sha256": "5ed0d2cf71ecb6e8c2b8db0d275e11a9767d937bbcc745d754b36593d11eed05", + "language": "Python", + "lines": 203, + "truncated": false, + "block": 1, + "row": 7668 + }, + { + "path": "main_hdf5.py", + "sha256": "28e4fd6bc2b34689b5f074c1461e27ac777d60772bf2f7cd7949547e34db7f4e", + "language": "Python", + "lines": 638, + "truncated": false, + "block": 1, + "row": 9435 + }, + { + "path": "main_hdf5_3d_v6_5.py", + "sha256": "5be4db7a42183103d7648effc0fd3ff4d5fe35a4b0b9f07d864c569c39a25bd2", + "language": "Python", + "lines": 1115, + "truncated": false, + "block": 1, + "row": 9774 + }, + { + "path": "provenance/build_bundle_manifest.py", + "sha256": "0a6805f9dfe25e1d431c9faeabf82ebbd95d88e6f14c3f6c11ee9f959f266cc1", + "language": "Python", + "lines": 134, + "truncated": false, + "block": 1, + "row": 7607 + }, + { + "path": "setup.py", + "sha256": "621d638274b584e5653ee4c2eaf161e44e21c204627b6b5d82d71eafc7fed259", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 1, + "row": 5210 + }, + { + "path": "taming/data/ade20k.py", + "sha256": "dbfebbb30dacd40060c742b9cbd8b83db71d55f9b05cfdb91189f72a62ce821d", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 1, + "row": 7548 + }, + { + "path": "taming/data/annotated_objects_coco.py", + "sha256": "17ba4b97538f1b67c786562732ffc0f9bb2c327aeafbfb63c08d2a34c2d915c0", + "language": "Python", + "lines": 139, + "truncated": false, + "block": 1, + "row": 7658 + }, + { + "path": "taming/data/annotated_objects_dataset.py", + "sha256": "5b6eb978ae314d62caa43947e0069336a6f2fe9a7e9e4ff8f49c3810f26689b5", + "language": "Python", + "lines": 218, + "truncated": false, + "block": 1, + "row": 8536 + }, + { + "path": "taming/data/annotated_objects_open_images.py", + "sha256": "bee0d5f5a4541e62ff353eea2ac40e7f92cf0930a254b00acb606aefedb62772", + "language": "Python", + "lines": 137, + "truncated": false, + "block": 1, + "row": 7772 + }, + { + "path": "taming/data/base.py", + "sha256": "9b58ada3f5530a77fa9d4805175962799cf7ec483e01fff4f208db0ea697d54e", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 1, + "row": 6582 + }, + { + "path": "taming/data/coco.py", + "sha256": "85865bb0fbfa777c39fa45d7f870a88f962fd81107d13afeb9fc29542235c442", + "language": "Python", + "lines": 176, + "truncated": false, + "block": 1, + "row": 8177 + }, + { + "path": "taming/data/conditional_builder/objects_bbox.py", + "sha256": "0bd33ded22e5456843b8c07f1c2059205a98aa7e463cfc808ebcdcf6a7bf9f76", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 1, + "row": 6855 + }, + { + "path": "taming/data/conditional_builder/objects_center_points.py", + "sha256": "b60ac5b3346f8692c1eee66be88b536e94656b691e6b4b71e4c07a035a975cc1", + "language": "Python", + "lines": 168, + "truncated": false, + "block": 1, + "row": 8188 + }, + { + "path": "taming/data/conditional_builder/utils.py", + "sha256": "18b0b10ee9e3bf12ffec8c41f0b1fb3948acb095a84aff4b187683bbd6797a0d", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 1, + "row": 7119 + }, + { + "path": "taming/data/custom.py", + "sha256": "e3ecd94b15c1600ecf79288e9db6d61fbaa13e0bc2360ffde0b089cf087cc694", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 1, + "row": 5714 + }, + { + "path": "taming/data/faceshq.py", + "sha256": "8b9c29aa15412cf37f0e5407ab8c7825c7d203f41474822d9dc2b59ec063ebc5", + "language": "Python", + "lines": 134, + "truncated": false, + "block": 1, + "row": 7339 + }, + { + "path": "taming/data/helper_types.py", + "sha256": "d9203e4e4d39b237157de183a2d2bdcfb1c4842aa15317ddc4253aa35230cabd", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 1, + "row": 5928 + }, + { + "path": "taming/data/image_transforms.py", + "sha256": "b7cb76a49d0b39df2371c203ec79e1363d53072ac096107bf98cb9edba26a9d3", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 1, + "row": 7300 + }, + { + "path": "taming/data/imagenet.py", + "sha256": "f98d4feeb4754e5789136eedd08adbbf7ceb1a0c57603c7839255ba5739208eb", + "language": "Python", + "lines": 558, + "truncated": false, + "block": 1, + "row": 9354 + }, + { + "path": "taming/data/open_images_helper.py", + "sha256": "c3f25ae759f8d7a9c3a26d81e06006f43c7c73e0d1c39699f6b97d9054070f65", + "language": "Python", + "lines": 379, + "truncated": false, + "block": 1, + "row": 8340 + }, + { + "path": "taming/data/sflckr.py", + "sha256": "db9161e5b39ce809b358254efac5af6ec51f563e69f0d53f1ce28f9d50192c97", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 1, + "row": 7166 + }, + { + "path": "taming/data/utils.py", + "sha256": "2e2e29e5c325e1a4ba31e210a367600ab03e238c71cbccc5e3ec04103c2a44d2", + "language": "Python", + "lines": 759, + "truncated": false, + "block": 1, + "row": 9625 + }, + { + "path": "taming/fsdp_setup.py", + "sha256": "af820d608e76aa3c700c84f9a5752ec29a65c2ec425064e44953b903dbf388bf", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 1, + "row": 6239 + }, + { + "path": "taming/lr_scheduler.py", + "sha256": "b639ed00d137235ae6b7e9a1b9d0e4df0f515e23f384ed9cdfe8dd7b477f673e", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 1, + "row": 5837 + }, + { + "path": "taming/models/autoencoders.py", + "sha256": "01d6c0b0cd6947bea9cae681beb5cd8368fc44d0e3c725a40810377e03ff4a02", + "language": "Python", + "lines": 4418, + "truncated": true, + "block": 1, + "row": 9880 + }, + { + "path": "taming/models/cond_transformer.py", + "sha256": "7edaec5d4f1c9b0c908c21fc91f23b96d96856626dcc82b70b5f616fe66b7db7", + "language": "Python", + "lines": 352, + "truncated": false, + "block": 1, + "row": 9064 + }, + { + "path": "taming/models/dummy_cond_stage.py", + "sha256": "962a9c7dc75ba78840730ad14e490fd4f7da1310d4d46dd47aeca1aef29b8e25", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 1, + "row": 5325 + }, + { + "path": "taming/models/vqgan.py", + "sha256": "7a08f309757c5c6ceb7023062c4a18c1aaedeb4635446d0627240dd175c233fe", + "language": "Python", + "lines": 816, + "truncated": false, + "block": 1, + "row": 9699 + }, + { + "path": "taming/modules/diffusionmodules/model.py", + "sha256": "5bef7bcc246b356986d73236e61c149552e8e2970b689ab580bd94668fb8c2ed", + "language": "Python", + "lines": 2743, + "truncated": false, + "block": 1, + "row": 9866 + }, + { + "path": "taming/modules/diffusionmodules/model2.py", + "sha256": "9ff8c3b6b3a213cf9af901eaf68c4e81a7e306425a850999020fe3ccdc9643a4", + "language": "Python", + "lines": 2571, + "truncated": false, + "block": 1, + "row": 9861 + }, + { + "path": "taming/modules/discriminator/model.py", + "sha256": "06bbf5e897b7093b6bdffd084d729f70ed1ea6477551b4806ba86abedfe32f51", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 1, + "row": 7500 + }, + { + "path": "taming/modules/losses/__init__.py", + "sha256": "ff96415f613e64a1ba704a436b21ffcd46cfa2c81321c24204563df39019686f", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 1, + "row": 5024 + }, + { + "path": "taming/modules/losses/contperceptual.py", + "sha256": "1be9a2768fba49a187a7c9a6c5c042b32dbcbfb7351cd6a969b75b8d73c418e3", + "language": "Python", + "lines": 3460, + "truncated": false, + "block": 1, + "row": 9878 + }, + { + "path": "taming/modules/losses/lpips.py", + "sha256": "205f7d6dd3839a5d09bd667b9279b0cda7c0a5df348783e2c0f213a5d9cb3b49", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 1, + "row": 7606 + }, + { + "path": "taming/modules/losses/segmentation.py", + "sha256": "677f5115b24e7d1f7e9fa784cfb4aaf6cf155335bca3ad6d1ad29e8927102b12", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 1, + "row": 5592 + }, + { + "path": "taming/modules/losses/vqperceptual.py", + "sha256": "d94c1949c3e10d45b6c4deb241009da245b2a71ab4d86f943ae8ac0640d75e9b", + "language": "Python", + "lines": 315, + "truncated": false, + "block": 1, + "row": 9033 + }, + { + "path": "taming/modules/misc/coord.py", + "sha256": "14fc6960e7764c89a76fe3729dabcbf6e15190bed4edbc9deab1f3f9edeb2ddd", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 1, + "row": 5656 + }, + { + "path": "taming/modules/transformer/mingpt.py", + "sha256": "e5359ed032681e4de8460f6e5a5b5f911cff3504c37ae7adb415e2aecd85254a", + "language": "Python", + "lines": 415, + "truncated": false, + "block": 1, + "row": 9151 + }, + { + "path": "taming/modules/transformer/permuter.py", + "sha256": "a70700c6ea3c5e14630ca49bea85ee1f737038a584eb90467e6f9fffae584f29", + "language": "Python", + "lines": 248, + "truncated": false, + "block": 1, + "row": 7979 + }, + { + "path": "taming/modules/util.py", + "sha256": "ca8e4aea31984683d85c4ccd05a4145c02257660d6ebef1bb0b87c91422cd0fe", + "language": "Python", + "lines": 219, + "truncated": false, + "block": 1, + "row": 7993 + }, + { + "path": "taming/modules/vqvae/quantize.py", + "sha256": "3ef2302edb73fda9e462066224caa61569bd3ec09aeaa41ff38c66fe877393eb", + "language": "Python", + "lines": 591, + "truncated": false, + "block": 1, + "row": 9468 + }, + { + "path": "taming/util.py", + "sha256": "1cfca04205f0b647da271809c3011b0f0c2fc920e1e847c79b270ee138f9de02", + "language": "Python", + "lines": 157, + "truncated": false, + "block": 1, + "row": 7374 + }, + { + "path": "tests/runtime_checks.py", + "sha256": "ccaa53cec5a440a5175ff77826103a8d72d91126b00306e5390c983486af9558", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 1, + "row": 7995 + }, + { + "path": "tests/validate_bundle.py", + "sha256": "2250a710be99633f33c7e2ab838789129fa7477ada3ddcce7b7461e0641d53e8", + "language": "Python", + "lines": 324, + "truncated": false, + "block": 1, + "row": 9065 + }, + { + "path": "train.py", + "sha256": "e289787385d95abb27c10264efd9b42653a176f64444b305d7ef904fd96ec16e", + "language": "Python", + "lines": 1118, + "truncated": false, + "block": 1, + "row": 9772 + }, + { + "path": "train_launcher.py", + "sha256": "cb4a35b2fbf9f3adf747fdafa57b333caaf382bed3fdd7c0060a04a8a8cf2b7f", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 1, + "row": 7491 + } + ] +} \ No newline at end of file diff --git a/manifests/0d/github.com__riichirohira__brainmodules.json b/manifests/0d/github.com__riichirohira__brainmodules.json new file mode 100644 index 0000000000000000000000000000000000000000..f7ebe4f665189d762190a12ecd3158aa53f24e6d --- /dev/null +++ b/manifests/0d/github.com__riichirohira__brainmodules.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/riichirohira/brainmodules", + "url": "https://github.com/riichirohira/BrainModules", + "host": "github.com", + "commit": "3b2ca6aeabc107cb29cd153c29637c2bbb1dec92", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "187b412f509eb9f44d6b9e50f4ebeef2bc85ba8e5f02a514fe37a451e4efb232", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2123 + }, + { + "path": "README.md", + "sha256": "602bffc08d3790adbd3fc08db1ddfaa818712c264d8e815f78f1881936911ebc", + "language": "Text", + "lines": 93, + "truncated": false, + "block": 1, + "row": 11881 + } + ] +} \ No newline at end of file diff --git a/manifests/0d/github.com__sdpenna66__smarterd.json b/manifests/0d/github.com__sdpenna66__smarterd.json new file mode 100644 index 0000000000000000000000000000000000000000..23b18e8ec6baba51b7d534379db6fe8d0126530e --- /dev/null +++ b/manifests/0d/github.com__sdpenna66__smarterd.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/sdpenna66/smarterd", + "url": "https://github.com/sdpenna66/SmartERD/tree/v1.0.0", + "host": "github.com", + "commit": "9e5d9b6c3986060440e763f57ccae079ff7651ac", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "278d567f0fa19cc3cb50542885fdc8a9c455242ac32d5fde51be08f3c6150ff0", + "language": "Text", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11789 + }, + { + "path": "TFfindRespFreq2_scirep.m", + "sha256": "e9401e0dcba8db96185227f8857d15994241103f98a243ace9b58615abc7bf0d", + "language": "MATLAB", + "lines": 128, + "truncated": false, + "block": 1, + "row": 3386 + }, + { + "path": "find_threshold.m", + "sha256": "a664c34bfce2e0a0b1059cabbc356c115af05958b27b5e6c799ad8a76431858f", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 1, + "row": 3078 + }, + { + "path": "launch_SmartERD.m", + "sha256": "0f4f5c4e007174b86eff067892dd3ec1c1f331075c452c13e25b8146e796cf54", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 1, + "row": 2447 + } + ] +} \ No newline at end of file diff --git a/manifests/0e/github.com__andrelmartins__tunits.json b/manifests/0e/github.com__andrelmartins__tunits.json new file mode 100644 index 0000000000000000000000000000000000000000..5bb0c3b4fb284b409f7313a1bf2a2ffe19d6e896 --- /dev/null +++ b/manifests/0e/github.com__andrelmartins__tunits.json @@ -0,0 +1,75 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/andrelmartins/tunits", + "url": "https://github.com/andrelmartins/tunits/tree/master", + "host": "github.com", + "commit": "80f91702b1d598d7c1ea0dabd83cd1a8810ddedf", + "license": "BSD-2-Clause", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "d3d5798ca01acb171885484f03edfabe041f5e78d8ee8002fe5a914282182272", + "language": "License", + "lines": 25, + "truncated": false, + "block": 1, + "row": 2187 + }, + { + "path": "README.md", + "sha256": "f61878063fcc208bb2f38b37519f6bab9b9b605a894b6197c634a9c6a15ce203", + "language": "Text", + "lines": 2, + "truncated": false, + "block": 1, + "row": 11763 + }, + { + "path": "pkg/R/data.prepare.R", + "sha256": "1f5e9de32baf11ecfa876d9c4e578bf66a1fd6354af8191ec9d413fc693963cb", + "language": "R", + "lines": 200, + "truncated": false, + "block": 1, + "row": 10328 + }, + { + "path": "pkg/R/data.view.R", + "sha256": "37eb7eff4d0636738f437248f318be3091d9945fb53b5bb2dd82ac2e4099210f", + "language": "R", + "lines": 23, + "truncated": false, + "block": 1, + "row": 9957 + }, + { + "path": "pkg/R/decoder.R", + "sha256": "75d1fc36262ae1ecc01f11817a2d819b0b2e65ee60aa99574929db11c9d71ba0", + "language": "R", + "lines": 259, + "truncated": false, + "block": 1, + "row": 10377 + }, + { + "path": "pkg/R/mappability.R", + "sha256": "4928bc07b093e8a21d6c830a92f954c12e2849c476821c60936ebee09c061296", + "language": "R", + "lines": 63, + "truncated": false, + "block": 1, + "row": 10127 + }, + { + "path": "pkg/R/utils.R", + "sha256": "b1ed422ae679620999d6bd1365329ddc59955c884eea70e62302946e48098ce0", + "language": "R", + "lines": 154, + "truncated": false, + "block": 1, + "row": 10258 + } + ] +} \ No newline at end of file diff --git a/manifests/0e/zenodo__20736463.json b/manifests/0e/zenodo__20736463.json new file mode 100644 index 0000000000000000000000000000000000000000..0d686a4b660a5cc6c523ec30e273674e1b6fe5ee --- /dev/null +++ b/manifests/0e/zenodo__20736463.json @@ -0,0 +1,84 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:20736463", + "url": "10.5281/zenodo.20736463", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "bb46271317784b53c904de34e5dbdd5cf8a5908110b5564ff283840e6252334c", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2127 + }, + { + "path": "README.md", + "sha256": "84283b6568225d6bf4177385caff6f2aa3195eaaab9eea28459ffd4c58bb8661", + "language": "Text", + "lines": 91, + "truncated": false, + "block": 1, + "row": 11856 + }, + { + "path": "cshift/__init__.py", + "sha256": "14b81c713f61abc8843fd9662791f49a154706f7fa609373e48849093d455b32", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 1, + "row": 5032 + }, + { + "path": "cshift/__version__.py", + "sha256": "acf49f5a021eab661654fc8448e030081b7cbdfb6c4e9224b8b0060c4cf24507", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4970 + }, + { + "path": "cshift/cshift.py", + "sha256": "1b00e8759b49d88ad5c098aee68454c9c018e7d56596c36199255b0abc053260", + "language": "Python", + "lines": 205, + "truncated": false, + "block": 1, + "row": 7777 + }, + { + "path": "cshift/utils.py", + "sha256": "3a74592dffd132cee9b7cc40913610f53cdee3f5069f83936ae132e9fb3c5e31", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 1, + "row": 6534 + }, + { + "path": "setup.py", + "sha256": "3e357c8bf71347a9a7b90893cc58aaa684a784892f94669fde49d801cc132d42", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 1, + "row": 5290 + }, + { + "path": "tests/test_cshift.py", + "sha256": "c629bbc1135a2653070a8e7defaf7395c971f8c2b7c82077c1ef3053459b1bbb", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 1, + "row": 6741 + } + ] +} \ No newline at end of file diff --git a/manifests/10/github.com__mic-dkfz__nnunet.json b/manifests/10/github.com__mic-dkfz__nnunet.json new file mode 100644 index 0000000000000000000000000000000000000000..30e2d4e8843fd61c67faff5b49c0b82829020244 --- /dev/null +++ b/manifests/10/github.com__mic-dkfz__nnunet.json @@ -0,0 +1,1524 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/mic-dkfz/nnunet", + "url": "https://github.com/MIC-DKFZ/nnUNet/tree/master", + "host": "github.com", + "commit": "202f6baa0adc2ef5f7b615df19cc4da970412cc0", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": ".github/scripts/safe-label.sh", + "sha256": "4d884fcf72cc20ff00160682124462c00970c030a4093aed45b60bf26c38c90e", + "language": "Shell", + "lines": 46, + "truncated": false, + "block": 1, + "row": 11624 + }, + { + "path": ".github/scripts/safe-pr-review.sh", + "sha256": "6c438133e4e13a65473063197c38aa9be503f0cac35fb44a94e0fd7c9275b41e", + "language": "Shell", + "lines": 29, + "truncated": false, + "block": 1, + "row": 11486 + }, + { + "path": "LICENSE", + "sha256": "ff93b6fdf1d59f7c48ca7f44f2d0db47bb7743a1c6fa0f4c5f4d7809f78ce70e", + "language": "License", + "lines": 201, + "truncated": false, + "block": 1, + "row": 2219 + }, + { + "path": "documentation/competitions/FLARE24/Task_1/inference_flare_task1.py", + "sha256": "d8697fc7454fc4c9b4ecc59b380de36242c3319dfe0ead1bef47666be628ee11", + "language": "Python", + "lines": 209, + "truncated": false, + "block": 1, + "row": 8649 + }, + { + "path": "documentation/competitions/FLARE24/Task_2/inference_flare_task2.py", + "sha256": "84dc15e740e27cd50c79a7fb004476db96db0842d557a8f2add6acfcb4182896", + "language": "Python", + "lines": 467, + "truncated": false, + "block": 1, + "row": 9479 + }, + { + "path": "documentation/competitions/Toothfairy2/inference_script_semseg_only_customInf2.py", + "sha256": "bf1d0375d5a082b041cf060ef74f520baccd30b297ea2075cab3426d87e40c98", + "language": "Python", + "lines": 359, + "truncated": false, + "block": 1, + "row": 9073 + }, + { + "path": "nnunetv2/batch_running/benchmarking/generate_benchmarking_commands.py", + "sha256": "3ba3831200199c7626daa229c369d7b9de265731b626beb111414ce6c41a72ea", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 1, + "row": 6300 + }, + { + "path": "nnunetv2/batch_running/benchmarking/summarize_benchmark_results.py", + "sha256": "c48b27489bc8a3e46d07eb3b516e917f3af595e8b8bfddf20c5f6da8341c766a", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 1, + "row": 6877 + }, + { + "path": "nnunetv2/batch_running/collect_results_custom_Decathlon.py", + "sha256": "56f21676a0d7ece3ff18be9c9c504c5b840d726191e34e422065fa8a7d7601c2", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 1, + "row": 7712 + }, + { + "path": "nnunetv2/batch_running/collect_results_custom_Decathlon_2d.py", + "sha256": "48089272883a32133deb5c0aa0b1fa99ac261a8e3d5ab9479bc55158877c4c6a", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5524 + }, + { + "path": "nnunetv2/batch_running/generate_lsf_runs_customDecathlon.py", + "sha256": "12e895f38f77604ebabebcb6713d6f7fbb27d591beb056bffb634a22cd2ad58d", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 1, + "row": 7438 + }, + { + "path": "nnunetv2/batch_running/jobs.sh", + "sha256": "b305a09b3d486e3489e2b9f88a880dd406ac6242efd90302788d0f5d28668449", + "language": "Shell", + "lines": 52, + "truncated": false, + "block": 1, + "row": 11744 + }, + { + "path": "nnunetv2/batch_running/release_trainings/nnunetv2_v1/collect_results.py", + "sha256": "ffc6b25b33e94b1ee35544ea6dcf51939111c596625c8c7529cd0d5b8639e788", + "language": "Python", + "lines": 112, + "truncated": false, + "block": 1, + "row": 7618 + }, + { + "path": "nnunetv2/batch_running/release_trainings/nnunetv2_v1/generate_lsf_commands.py", + "sha256": "270310f73c8b80187b1e48eb4164f0aa5df9a9e4cc3d1e92b7a4c472f5124ac4", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 1, + "row": 7069 + }, + { + "path": "nnunetv2/configuration.py", + "sha256": "c62f73b1bc1111b0bc9c3dfe5c8d1a481047bbb2c128b6017ede97da2af17beb", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 1, + "row": 5326 + }, + { + "path": "nnunetv2/dataset_conversion/Dataset015_018_RibFrac_RibSeg.py", + "sha256": "6021689ae577f8e002f8b10b9e11fb72d457215376cabc0d71f61821201cc333", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 1, + "row": 7580 + }, + { + "path": "nnunetv2/dataset_conversion/Dataset021_CTAAorta.py", + "sha256": "b6f0488a2f244227219049232877cc19dc3d8e2b44f32cef6a8cb1e44e7d1c6f", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 1, + "row": 6451 + }, + { + "path": "nnunetv2/dataset_conversion/Dataset023_AbdomenAtlas1_1Mini.py", + "sha256": "bb34fc440e4a3143e512ae061161fe3c780aa190beed8c46fb1c1d2b1fbfc352", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 1, + "row": 6475 + }, + { + "path": "nnunetv2/dataset_conversion/Dataset027_ACDC.py", + "sha256": "833c9bbbb0fe3355e550368a8af1d0340058852e91de44f13d9e72b5886436b0", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 1, + "row": 7309 + }, + { + "path": "nnunetv2/dataset_conversion/Dataset042_BraTS18.py", + "sha256": "a69dd8c0a5737ca3f6127f5c608373d9855e86cb18606af8d7e4822f8ee4dc59", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 1, + "row": 7385 + }, + { + "path": "nnunetv2/dataset_conversion/Dataset043_BraTS19.py", + "sha256": "adb330e9aaa079cf0ff23e398f4b59b712b158b9725acfa4f2f2f2751f6a5587", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 1, + "row": 7386 + }, + { + "path": "nnunetv2/dataset_conversion/Dataset073_Fluo_C3DH_A549_SIM.py", + "sha256": "ff615ff7b67226d925875985493b9eaba20939bd9651544bd508d62d37c5264b", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 1, + "row": 7193 + }, + { + "path": "nnunetv2/dataset_conversion/Dataset114_MNMs.py", + "sha256": "d1ac40e1583274cadf1b88d6899c402f01b08c61fec214d508347cb2bd2807a5", + "language": "Python", + "lines": 198, + "truncated": false, + "block": 1, + "row": 8362 + }, + { + "path": "nnunetv2/dataset_conversion/Dataset115_EMIDEC.py", + "sha256": "41209b45ce2ec0576e172029c5a43287af31475d40efe4b8cb149e0cb77b0089", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 1, + "row": 6474 + }, + { + "path": "nnunetv2/dataset_conversion/Dataset119_ToothFairy2_All.py", + "sha256": "0c35ff5a280d3356b93e19aa41e439f21d961073feedf9d7fa87c25ead7426e6", + "language": "Python", + "lines": 196, + "truncated": false, + "block": 1, + "row": 7898 + }, + { + "path": "nnunetv2/dataset_conversion/Dataset120_RoadSegmentation.py", + "sha256": "4551cbaa5af87580238c7b28f3ddaa551043d782bcca350041a10dad7dd8b713", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 1, + "row": 6932 + }, + { + "path": "nnunetv2/dataset_conversion/Dataset137_BraTS21.py", + "sha256": "bf26185c147961eeca20f03f7c4a358cf5eb44b678c19bb8bf7cc17164b08085", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 1, + "row": 7118 + }, + { + "path": "nnunetv2/dataset_conversion/Dataset218_Amos2022_task1.py", + "sha256": "18b0e6d5dc74aeeabca0960f089f2e6e8308d0eea3403d44378054102df23d44", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 1, + "row": 7041 + }, + { + "path": "nnunetv2/dataset_conversion/Dataset219_Amos2022_task2.py", + "sha256": "a41b0f369cf8f2b9cab2414b7faecc9bd022416e443ac83ba82036012cac136a", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 1, + "row": 6986 + }, + { + "path": "nnunetv2/dataset_conversion/Dataset220_KiTS2023.py", + "sha256": "f97256147a2563e22f831dcfa503c2f6a95785f722511b9fae590d19363b6c85", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 1, + "row": 6320 + }, + { + "path": "nnunetv2/dataset_conversion/Dataset221_AutoPETII_2023.py", + "sha256": "adb24656233a4ac01c0a7398076c2c8df43082b69e1facb1c1cce923476affe5", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 1, + "row": 6838 + }, + { + "path": "nnunetv2/dataset_conversion/Dataset223_AMOS2022postChallenge.py", + "sha256": "6c1b541a62b5be4b948e0f4874245610e6a5b76659df60558890efb339c10d1c", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 1, + "row": 6606 + }, + { + "path": "nnunetv2/dataset_conversion/Dataset224_AbdomenAtlas1.0.py", + "sha256": "f83032e393f718a46ba90c6a364994f92b8cd3a5bf9131459a0bb9cc28effae3", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 1, + "row": 6458 + }, + { + "path": "nnunetv2/dataset_conversion/Dataset226_BraTS2024-BraTS-GLI.py", + "sha256": "fe8228b892a1f647db3674f388f545c3c0cf6016c8ca5c1e0aeaa15b0b387847", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 1, + "row": 6367 + }, + { + "path": "nnunetv2/dataset_conversion/Dataset227_TotalSegmentatorMRI.py", + "sha256": "d5b21485ec81fd445ec7643ae5086688477f8f8d5d316bc07083d330804a1b94", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 1, + "row": 6377 + }, + { + "path": "nnunetv2/dataset_conversion/Dataset987_dummyDataset4.py", + "sha256": "b6a2fbe51d9007d0917cac4ce6da87dd0850798052a94798d8c82335c8befe11", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 1, + "row": 5937 + }, + { + "path": "nnunetv2/dataset_conversion/Dataset989_dummyDataset4_2.py", + "sha256": "3eec6f0bc34a6bb7e83d6ba96ffe4cdd06410d0bf9a8facbcf282a5303203711", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 1, + "row": 5955 + }, + { + "path": "nnunetv2/dataset_conversion/convert_MSD_dataset.py", + "sha256": "79ba852dfc114290eb9ec6c4ff376dac7d1d966f003f538f79ce20ddd13eba9a", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 1, + "row": 7717 + }, + { + "path": "nnunetv2/dataset_conversion/convert_raw_dataset_from_old_nnunet_format.py", + "sha256": "a007dc0cf6d3e383e9fbc0ad300e7a0b45ce95711ac969ec06f847699bb1cda6", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 1, + "row": 6722 + }, + { + "path": "nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset996_IntegrationTest_Hippocampus_regions_ignore.py", + "sha256": "85549973dbb0afff3327871a4cff191283626dcdfb472df3cc7486334968c722", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 1, + "row": 6827 + }, + { + "path": "nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset997_IntegrationTest_Hippocampus_regions.py", + "sha256": "0fdc2e99d835b33d8db1f8992a13d60619a587cd2f1b3230f1fea2d0e478f0da", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 1, + "row": 5988 + }, + { + "path": "nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset998_IntegrationTest_Hippocampus_ignore.py", + "sha256": "af8f7a0189ae069a11b0a93fdc8e06cff70911cc47896818c043d63c3b948449", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 1, + "row": 5936 + }, + { + "path": "nnunetv2/dataset_conversion/datasets_for_integration_tests/Dataset999_IntegrationTest_Hippocampus.py", + "sha256": "425ad3577d58a659260c9bbef555a8ae19a638b5905dedb1d6f8632a2ae654e5", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 1, + "row": 5759 + }, + { + "path": "nnunetv2/dataset_conversion/generate_dataset_json.py", + "sha256": "72e78a49b9a6f32f5ebc0a8312804ee49ecbd228b4e8b9537348b847dfe6fa15", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 1, + "row": 7297 + }, + { + "path": "nnunetv2/ensembling/ensemble.py", + "sha256": "8e7d4e6e41bea4a74c102a1de56aa634e52a6f8031c8b419f71866e989e818fc", + "language": "Python", + "lines": 207, + "truncated": false, + "block": 1, + "row": 8498 + }, + { + "path": "nnunetv2/evaluation/accumulate_cv_results.py", + "sha256": "bafa26af2935673e1742aa50acf8371fd9e08240fc7ff6b366fcb57f160e5e78", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 1, + "row": 6879 + }, + { + "path": "nnunetv2/evaluation/evaluate_predictions.py", + "sha256": "bdce137cc297e33e126d648c625dd905a6c41d6aa80a521f4a629bbeca3df294", + "language": "Python", + "lines": 262, + "truncated": false, + "block": 1, + "row": 8809 + }, + { + "path": "nnunetv2/evaluation/find_best_configuration.py", + "sha256": "59cf665c440e508df99221f94210684cf0cc4b7860c3f04bbb5978baa8913b87", + "language": "Python", + "lines": 339, + "truncated": false, + "block": 1, + "row": 9279 + }, + { + "path": "nnunetv2/experiment_planning/dataset_fingerprint/fingerprint_extractor.py", + "sha256": "3c02d290f45c06b3d517f866ae4b9fc4e7fe39155ce8efc6ed1eafa8525e5900", + "language": "Python", + "lines": 211, + "truncated": false, + "block": 1, + "row": 8771 + }, + { + "path": "nnunetv2/experiment_planning/experiment_planners/default_experiment_planner.py", + "sha256": "c37bb500e9ddd414beff4fae76992af847a8bfeef4b1dace3a052e5fba751554", + "language": "Python", + "lines": 603, + "truncated": false, + "block": 1, + "row": 9670 + }, + { + "path": "nnunetv2/experiment_planning/experiment_planners/network_topology.py", + "sha256": "2140c9c6b20273bbf3052a72459954543d93790cc5269e0d8fbaddcfbd30aa8f", + "language": "Python", + "lines": 108, + "truncated": false, + "block": 1, + "row": 7106 + }, + { + "path": "nnunetv2/experiment_planning/experiment_planners/resampling/planners_no_resampling.py", + "sha256": "f14c3cf05a40363acd8db6ff9c94cdfad22d78a94dc2bfd82a5ec2bfddcf3ae4", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 1, + "row": 6644 + }, + { + "path": "nnunetv2/experiment_planning/experiment_planners/resampling/resample_with_torch.py", + "sha256": "25d360daf2da56c79d535a9ac7eba5f0e8fd514dd8480e00fadf902846f814f3", + "language": "Python", + "lines": 181, + "truncated": false, + "block": 1, + "row": 8308 + }, + { + "path": "nnunetv2/experiment_planning/experiment_planners/resencUNet_planner.py", + "sha256": "e9dec95ba75105a478319aae452d676b88d834721d38df4019bd8063d1f21aa9", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 1, + "row": 5798 + }, + { + "path": "nnunetv2/experiment_planning/experiment_planners/residual_unets/residual_encoder_unet_planners.py", + "sha256": "f2de43f8bc21a3bc8d7527380ff18015404a7a95561f7762a401cc87f740ddff", + "language": "Python", + "lines": 291, + "truncated": false, + "block": 1, + "row": 9175 + }, + { + "path": "nnunetv2/experiment_planning/like_nnssl.py", + "sha256": "01e551bcb642e5b0eb70524dfe855100aa701b8fb8d5c50361ffc2f7b4de7737", + "language": "Python", + "lines": 512, + "truncated": false, + "block": 1, + "row": 9471 + }, + { + "path": "nnunetv2/experiment_planning/plan_and_preprocess_api.py", + "sha256": "46fbca9631d6bec94ebd6e98906d0c6aac498497f4d9b2ee95057085f53dd914", + "language": "Python", + "lines": 171, + "truncated": false, + "block": 1, + "row": 8526 + }, + { + "path": "nnunetv2/experiment_planning/plan_and_preprocess_entrypoints.py", + "sha256": "0e76f6f7e6d27bf5c1d4441ecc0a4e42cab5fd3bfa835c2cb2111de7214bf09e", + "language": "Python", + "lines": 235, + "truncated": false, + "block": 1, + "row": 9270 + }, + { + "path": "nnunetv2/experiment_planning/plans_for_pretraining/move_plans_between_datasets.py", + "sha256": "6dec72fbd5e51a0f0de5e27b366f96b653ba634358d533899d37de68876473d7", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 1, + "row": 7266 + }, + { + "path": "nnunetv2/experiment_planning/verify_dataset_integrity.py", + "sha256": "1a6539853717e4cf90f2830893326b87a56bee61bbd6e84b275fd68019b425ad", + "language": "Python", + "lines": 239, + "truncated": false, + "block": 1, + "row": 8824 + }, + { + "path": "nnunetv2/imageio/base_reader_writer.py", + "sha256": "ded57b2e4a14ab4775461f036449e6dda9062173736de3502f181a8364757198", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 1, + "row": 7612 + }, + { + "path": "nnunetv2/imageio/natural_image_reader_writer.py", + "sha256": "944cedccc7c471bced0aadcd861fab7bc84e9c08c571ab3e0da9947f204e4be3", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 1, + "row": 7066 + }, + { + "path": "nnunetv2/imageio/nibabel_reader_writer.py", + "sha256": "251b7edd0baff8c2b9790cafbafe361310636c2122bbe92be61426b2d6767500", + "language": "Python", + "lines": 222, + "truncated": false, + "block": 1, + "row": 8452 + }, + { + "path": "nnunetv2/imageio/reader_writer_registry.py", + "sha256": "0190dbc7303a12d7c1afa5ba633d72bcaedabb4086fedacefffbe72b85b7e363", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 1, + "row": 7155 + }, + { + "path": "nnunetv2/imageio/simpleitk_reader_writer.py", + "sha256": "ef5afaf725119faa01256f385724c51d0b2ab2fd68551d669f49533229c1fab8", + "language": "Python", + "lines": 234, + "truncated": false, + "block": 1, + "row": 8596 + }, + { + "path": "nnunetv2/imageio/tif_reader_writer.py", + "sha256": "b74e207550d209f851d3887557376ddd13f98a13bf3c681b03e792a786d0efd9", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 1, + "row": 7379 + }, + { + "path": "nnunetv2/inference/JHU_inference.py", + "sha256": "42ed5eeb1794459c1b0fd88393277b7820babab8ae48d09aff619079aca88f7b", + "language": "Python", + "lines": 197, + "truncated": false, + "block": 1, + "row": 8285 + }, + { + "path": "nnunetv2/inference/data_iterators.py", + "sha256": "8437bd32ea1f055457d5e5d0b1e5b4fcbc51eeeb619586401bc9204e64cc501b", + "language": "Python", + "lines": 315, + "truncated": false, + "block": 1, + "row": 9111 + }, + { + "path": "nnunetv2/inference/examples.py", + "sha256": "eb68c61ddc14b14006417b526a5a87363fcfe87a3a9cd8c4059c4e31f80a2419", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 1, + "row": 7832 + }, + { + "path": "nnunetv2/inference/export_prediction.py", + "sha256": "5b4db8e6f3e1a57f91babb21bca19cdc2c948d955c91fae24d0543a94f34fd7d", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 1, + "row": 8407 + }, + { + "path": "nnunetv2/inference/predict_from_raw_data.py", + "sha256": "c350e3202a7a67c3aef12e9206a744add442110ff8a4377c1f9640104b20a31f", + "language": "Python", + "lines": 1099, + "truncated": false, + "block": 1, + "row": 9822 + }, + { + "path": "nnunetv2/inference/sliding_window_prediction.py", + "sha256": "df763e2077de4c616a546d5baa7707dff2abc678ec2c370d9bef4fa94cd00674", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 1, + "row": 6704 + }, + { + "path": "nnunetv2/model_sharing/entry_points.py", + "sha256": "f208bc7ed47b6a3dae45788a8153c8a08d1507977d7dcfed15200142c931aee0", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 1, + "row": 6977 + }, + { + "path": "nnunetv2/model_sharing/model_download.py", + "sha256": "1c69b2246957e85fabf1909a5d6b02651255ade64c7ae55b76af8bd9f8a1000b", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 5980 + }, + { + "path": "nnunetv2/model_sharing/model_export.py", + "sha256": "9fbb7550a44f409bf97ab8375b0ef9268852e9cbcf4e8d1ae7d19ead4ee59a42", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 1, + "row": 7920 + }, + { + "path": "nnunetv2/model_sharing/model_import.py", + "sha256": "d5bea3c57923755557f58e86d73c4e2bc060fd15bb10d318ebab652ea83cc4aa", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 1, + "row": 5155 + }, + { + "path": "nnunetv2/paths.py", + "sha256": "9578aabd766402d21111ec04b3bb07a71b39ce618e5b06007fb04d86e3d18cd0", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 1, + "row": 6629 + }, + { + "path": "nnunetv2/postprocessing/remove_connected_components.py", + "sha256": "f8be44e499bc8b03df4f23eb68bce15a60d508829176267be337f57c3547e0a2", + "language": "Python", + "lines": 361, + "truncated": false, + "block": 1, + "row": 9345 + }, + { + "path": "nnunetv2/preprocessing/cropping/cropping.py", + "sha256": "57298102d27dc19a88945399048dba6e07c73d35c0f4cad42c698995c4d2f1ac", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 5817 + }, + { + "path": "nnunetv2/preprocessing/normalization/default_normalization_schemes.py", + "sha256": "e260a437360df5b64f2279c283c12b255abc75927d52546fc7fb90987a1745e5", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 1, + "row": 7358 + }, + { + "path": "nnunetv2/preprocessing/normalization/map_channel_name_to_normalization.py", + "sha256": "e195bc1f5cdfcf723b1a11c15e2539f15d11018bfcf20a758e18badca4b723fb", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 1, + "row": 5693 + }, + { + "path": "nnunetv2/preprocessing/preprocessors/default_preprocessor.py", + "sha256": "a2bb834d8a772ea47fab4281ddc83444d80d194ee84be53ee4ef6e689829695e", + "language": "Python", + "lines": 492, + "truncated": false, + "block": 1, + "row": 9469 + }, + { + "path": "nnunetv2/preprocessing/resampling/default_resampling.py", + "sha256": "28f7214e82c6ab74eb565ab5662ae753886f067875fe96ea1ff07d7ccacd04e7", + "language": "Python", + "lines": 231, + "truncated": false, + "block": 1, + "row": 8712 + }, + { + "path": "nnunetv2/preprocessing/resampling/no_resampling.py", + "sha256": "78838ffeefc3dfe065f0d667ec2613d26b7abf62344222fb44c98d7e6dfcb2e7", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 1, + "row": 5287 + }, + { + "path": "nnunetv2/preprocessing/resampling/resample_torch.py", + "sha256": "14da7db362c338fcd9276ff55358b46c8eb446a1153ab3a438ecc6e4eeafc9f8", + "language": "Python", + "lines": 174, + "truncated": false, + "block": 1, + "row": 8104 + }, + { + "path": "nnunetv2/preprocessing/resampling/utils.py", + "sha256": "7f5cceddb94a028944f64074af41dc202d3ecba56e5c08dc7e2022e16ee1d141", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 1, + "row": 5530 + }, + { + "path": "nnunetv2/preprocessing/sampling_locations/extract_sampling_locations.py", + "sha256": "be837c1382768df158c3d20be5758aa76b58d56d1853ff472392c49730282fca", + "language": "Python", + "lines": 171, + "truncated": false, + "block": 1, + "row": 8361 + }, + { + "path": "nnunetv2/run/load_pretrained_weights.py", + "sha256": "47012faae9240228240500ecffe46de9d0b8b0d6f3d384591664bf968e3ff8a1", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 1, + "row": 7024 + }, + { + "path": "nnunetv2/run/run_training.py", + "sha256": "29be2749495bc4aacb0223c1db4433295baa9d8981a4d13b60db8f7d3523d8d5", + "language": "Python", + "lines": 351, + "truncated": false, + "block": 1, + "row": 9247 + }, + { + "path": "nnunetv2/run/run_training_from_pretrained.py", + "sha256": "8a5847c247b78aee9eaa0cc1858843ac279ab720a2a6bcb63fe96b4189d9d3cf", + "language": "Python", + "lines": 252, + "truncated": false, + "block": 1, + "row": 8564 + }, + { + "path": "nnunetv2/tests/integration_tests/add_lowres_and_cascade.py", + "sha256": "5247c6d965b919e11398bf06d393043276b76535669402d266cd87b159df3042", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 1, + "row": 6338 + }, + { + "path": "nnunetv2/tests/integration_tests/cleanup_integration_test.py", + "sha256": "05294b36b4c9524209b1f8583db909fbe1bcd547bcd0419bb7d90f36d034b6e9", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 1, + "row": 5488 + }, + { + "path": "nnunetv2/tests/integration_tests/lsf_commands.sh", + "sha256": "9b23242ed31e56c2b50b589be48c08008f2292f5863f8e78802d6bb637e16d37", + "language": "Shell", + "lines": 10, + "truncated": false, + "block": 1, + "row": 11670 + }, + { + "path": "nnunetv2/tests/integration_tests/prepare_integration_tests.sh", + "sha256": "9ee91888287f3c1caa662c9c2332dcc8e80d4b0d984e4981ce445dae4b56b5c4", + "language": "Shell", + "lines": 18, + "truncated": false, + "block": 1, + "row": 11502 + }, + { + "path": "nnunetv2/tests/integration_tests/run_integration_test.sh", + "sha256": "778b9fb65049c20745921996bd11195ed58b2f26d67d95aff32413d1f7b88453", + "language": "Shell", + "lines": 27, + "truncated": false, + "block": 1, + "row": 11630 + }, + { + "path": "nnunetv2/tests/integration_tests/run_integration_test_bestconfig_inference.py", + "sha256": "acfbfba79a943003d1d40b0c140f2790b17948dcac2f4cb322a43f253d93609e", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 1, + "row": 7223 + }, + { + "path": "nnunetv2/tests/integration_tests/run_integration_test_trainingOnly_DDP.sh", + "sha256": "99494db232e67bf1ef81046125863228612151df87c3221cad0372679e294f2a", + "language": "Shell", + "lines": 1, + "truncated": false, + "block": 1, + "row": 11108 + }, + { + "path": "nnunetv2/tests/integration_tests/run_nnunet_inference.py", + "sha256": "9f1eb418c303e55113653273f2ffbb76f3caae0bfa837186f1475e33f2599848", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 1, + "row": 6154 + }, + { + "path": "nnunetv2/tests/test_copy_file_if_newer.py", + "sha256": "c540f7e0b7d7684910596a749c85c5395be45eca2c7943ed4346d6b948f745ad", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 1, + "row": 6404 + }, + { + "path": "nnunetv2/tests/test_find_objects.py", + "sha256": "c77d1e98f183ce4a77d56217735e01c0f2f78123d4e42c05e7bc076ddbc54601", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 1, + "row": 7450 + }, + { + "path": "nnunetv2/tests/test_foreground_locations.py", + "sha256": "2fbb147c4e30e8265c4ee57704ac962202574bfc9eb96968e444e935b8dbb1f3", + "language": "Python", + "lines": 521, + "truncated": false, + "block": 1, + "row": 9518 + }, + { + "path": "nnunetv2/tests/test_natural_image_tiff_compression.py", + "sha256": "db32cb05814482a6b8747f1f1c5c0a038b349bc7fef8910a8ca5bc331b7c608c", + "language": "Python", + "lines": 148, + "truncated": false, + "block": 1, + "row": 7770 + }, + { + "path": "nnunetv2/tests/test_paths.py", + "sha256": "14c55695ec3c102e0f1e87688d97583cbc90067b5a5bf1ce2704d08f3d0648e1", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 1, + "row": 6251 + }, + { + "path": "nnunetv2/tests/test_resampling.py", + "sha256": "4c0f6a847d5709f5b306000e017725d384ea66b3034b96da4f2da3000711d414", + "language": "Python", + "lines": 273, + "truncated": false, + "block": 1, + "row": 9039 + }, + { + "path": "nnunetv2/training/data_augmentation/compute_initial_patch_size.py", + "sha256": "4da8a4fbb4db5bd5a428a596793c0bd685d360ec8b24bd4be7495fda59352e9f", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 1, + "row": 5807 + }, + { + "path": "nnunetv2/training/data_augmentation/custom_transforms/cascade_transforms.py", + "sha256": "246f051c507492f6861ae505535b13fa1e2172f13e4407364212df2c8d8ae2e7", + "language": "Python", + "lines": 136, + "truncated": false, + "block": 1, + "row": 8024 + }, + { + "path": "nnunetv2/training/data_augmentation/custom_transforms/deep_supervision_donwsampling.py", + "sha256": "f2f85b8a092e4fee07b1c6763dd44566592a1a780a74cec20f7e877fb1d4ba9b", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 1, + "row": 6577 + }, + { + "path": "nnunetv2/training/data_augmentation/custom_transforms/masking.py", + "sha256": "e0a648d7875ae44c17ffb9af200ab0e1dab263c4f29678075db7a6819a243031", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 1, + "row": 5650 + }, + { + "path": "nnunetv2/training/data_augmentation/custom_transforms/region_based_training.py", + "sha256": "7b0802c0791b8a7e253e1ad1e9ee2cad6c95e8882e56b0b9e556d0d2220db4e6", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 1, + "row": 5918 + }, + { + "path": "nnunetv2/training/data_augmentation/custom_transforms/transforms_for_dummy_2d.py", + "sha256": "63443f7e76981ee4eed59649ab8b6cef09bddd63da8d9ccace5d836afb82532f", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 1, + "row": 6496 + }, + { + "path": "nnunetv2/training/dataloading/data_loader.py", + "sha256": "6f35e60da43c9c7c3aa2fd71c52e451ac898265b6c9b1ccf72f9b90d3b0506e4", + "language": "Python", + "lines": 217, + "truncated": false, + "block": 1, + "row": 8753 + }, + { + "path": "nnunetv2/training/dataloading/foreground_locations.py", + "sha256": "17e6f1d2698d432e3b380d204e1c3a76858e906ca0edcde5be64cf43bca25258", + "language": "Python", + "lines": 586, + "truncated": false, + "block": 1, + "row": 9564 + }, + { + "path": "nnunetv2/training/dataloading/nnunet_dataset.py", + "sha256": "8f9e6123ae83e33ea3a3fc48b8285a6e80eb52b9e90ead19148806d5613d20aa", + "language": "Python", + "lines": 530, + "truncated": false, + "block": 1, + "row": 9314 + }, + { + "path": "nnunetv2/training/dataloading/utils.py", + "sha256": "d6d2518e0092c85605ba6ae5b98f3a11d74d46015988e350ffa6614f56ae42e1", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 1, + "row": 6754 + }, + { + "path": "nnunetv2/training/logging/nnunet_logger.py", + "sha256": "128e720e7fd23b57ffe0279f7b1e45ccaeff5c11aee8d42dfb2ba69750460174", + "language": "Python", + "lines": 303, + "truncated": false, + "block": 1, + "row": 8692 + }, + { + "path": "nnunetv2/training/loss/compound_losses.py", + "sha256": "f7d4516748b62c29bbf281c19ae1ba1f109219820c00ee4fc88ceee651ccb092", + "language": "Python", + "lines": 156, + "truncated": false, + "block": 1, + "row": 7762 + }, + { + "path": "nnunetv2/training/loss/deep_supervision.py", + "sha256": "41fd5993faaf3e482ed370bd2af97b6cb943bb59a92cc48f7712802283325a9d", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 1, + "row": 5945 + }, + { + "path": "nnunetv2/training/loss/dice.py", + "sha256": "cbf124bcfb093516b8066942959a45a1e3bfbcee5b96cc5de369330ee31cdbd2", + "language": "Python", + "lines": 200, + "truncated": false, + "block": 1, + "row": 7999 + }, + { + "path": "nnunetv2/training/loss/robust_ce_loss.py", + "sha256": "d0f74c94846f03d19658c01c429260ca18c0d7bd2fcc59dab61c82d8d588acaa", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 1, + "row": 5805 + }, + { + "path": "nnunetv2/training/lr_scheduler/polylr.py", + "sha256": "29beff3ce0b8b2881012092752255bae0c276a6fb68da9c72643a8e3054ddcf3", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 1, + "row": 5673 + }, + { + "path": "nnunetv2/training/lr_scheduler/warmup.py", + "sha256": "c00817feabd64e46cc22352395f5cb3e6d8db0e4f02887a64369e7864fc17b85", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 1, + "row": 7566 + }, + { + "path": "nnunetv2/training/nnUNetTrainer/nnUNetTrainer.py", + "sha256": "cf93784ed047f38fe17dff33d532337a991e046e082602d5f9c86e2827e4213b", + "language": "Python", + "lines": 1505, + "truncated": false, + "block": 1, + "row": 9843 + }, + { + "path": "nnunetv2/training/nnUNetTrainer/pretraining/dynamicPretrainedTrainer.py", + "sha256": "0aed6248fece3909d1a80728e7b6fea28c67c054d086a2b3036db451f1cbfb53", + "language": "Python", + "lines": 455, + "truncated": false, + "block": 1, + "row": 9415 + }, + { + "path": "nnunetv2/training/nnUNetTrainer/pretraining/pretrainedTrainer.py", + "sha256": "7aca6881b25469b48726c12676fc1059e9c1f3dd5576d31024af13711a0ffa66", + "language": "Python", + "lines": 760, + "truncated": false, + "block": 1, + "row": 9696 + }, + { + "path": "nnunetv2/training/nnUNetTrainer/pretraining/thrp_primusx_finetuning.py", + "sha256": "73939d29546cbc429c06c6e635aa1d98f4e876076096afd64337f7ab5da1020a", + "language": "Python", + "lines": 287, + "truncated": false, + "block": 1, + "row": 8906 + }, + { + "path": "nnunetv2/training/nnUNetTrainer/primus/primus_trainers.py", + "sha256": "b4f7466823002ba6d90c1cd968f6a5c34dc780bdcb0a0c8978f939886de378a0", + "language": "Python", + "lines": 511, + "truncated": false, + "block": 1, + "row": 9184 + }, + { + "path": "nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs.py", + "sha256": "41c61c88d8a7db1f3fa175b2287d5682f3d22162556b523844884c757f420154", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 1, + "row": 6755 + }, + { + "path": "nnunetv2/training/nnUNetTrainer/variants/benchmarking/nnUNetTrainerBenchmark_5epochs_noDataLoading.py", + "sha256": "902e6f8731ccb7f420924e6ec6011d953c99ba608ab81f628bca7f3a318c800f", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 1, + "row": 6622 + }, + { + "path": "nnunetv2/training/nnUNetTrainer/variants/competitions/aortaseg24.py", + "sha256": "8f5cbb5d73b1a4c0e1975f29518f205e4850a95639fd295a0ada5d04428a88e1", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 1, + "row": 5232 + }, + { + "path": "nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDA5.py", + "sha256": "a9b9a452a94ed43b959715add5f1b05533d694dd82e8504f00532979b9c1022e", + "language": "Python", + "lines": 390, + "truncated": false, + "block": 1, + "row": 9202 + }, + { + "path": "nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerDAOrd0.py", + "sha256": "443741aed64034afb9f24b3922a4a9de8912908580bc31218915b2c3ffa88bd4", + "language": "Python", + "lines": 191, + "truncated": false, + "block": 1, + "row": 8213 + }, + { + "path": "nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoDA.py", + "sha256": "c7153eba175fe9869de549e9a425d050a05a1b23fd96ec0bbdf792398ff62129", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 1, + "row": 6088 + }, + { + "path": "nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainerNoMirroring.py", + "sha256": "da1b3da72695cc0984f1899ef450656d60af13b48624e7a5466475e0b8db0817", + "language": "Python", + "lines": 215, + "truncated": false, + "block": 1, + "row": 8396 + }, + { + "path": "nnunetv2/training/nnUNetTrainer/variants/data_augmentation/nnUNetTrainer_noDummy2DDA.py", + "sha256": "c4e18a1bd037263f446a2e8d9316dbc212b1fba08b8437b92cab2f2ebe3207b5", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 1, + "row": 6063 + }, + { + "path": "nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerCELoss.py", + "sha256": "fa655414f0dd1717e8f34aa4cad186c1a0448e7e706e94cc7a2eb60c3af07ee1", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 1, + "row": 6090 + }, + { + "path": "nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerDiceLoss.py", + "sha256": "3d02672018525e98772829ab7192c7a127ab7952e38beb2567093a131c71d993", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 1, + "row": 6781 + }, + { + "path": "nnunetv2/training/nnUNetTrainer/variants/loss/nnUNetTrainerTopkLoss.py", + "sha256": "80f3b9684439165f4e5b3356ce554dedcfb2a3c2ccccd1e201f6460f3029cd78", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 1, + "row": 6956 + }, + { + "path": "nnunetv2/training/nnUNetTrainer/variants/lr_schedule/nnUNetTrainerCosAnneal.py", + "sha256": "290980ec3e057d5dc7556c39601482bc9d3fd55645219a0cc6b1fe32ed892121", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 1, + "row": 5403 + }, + { + "path": "nnunetv2/training/nnUNetTrainer/variants/lr_schedule/nnUNetTrainer_warmup.py", + "sha256": "f3a97864619a42b07d50fd4fb29afcb00a31a143ee181d21440364454dd4ac59", + "language": "Python", + "lines": 128, + "truncated": false, + "block": 1, + "row": 7629 + }, + { + "path": "nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerBN.py", + "sha256": "4ba005ed047c5ddb8063402bb64f904aa50cb3ed4c7802d8dcd18fd4adeba278", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 1, + "row": 6073 + }, + { + "path": "nnunetv2/training/nnUNetTrainer/variants/network_architecture/nnUNetTrainerNoDeepSupervision.py", + "sha256": "d89f051248ff58f3af7e5e9a4456751949d89d08c710f9e4722e0bead890d564", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 1, + "row": 5359 + }, + { + "path": "nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdam.py", + "sha256": "49bb9d187be938d949d7cae3d51a95f4df22ab0c730156c98a3bb283bab42069", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 1, + "row": 6626 + }, + { + "path": "nnunetv2/training/nnUNetTrainer/variants/optimizer/nnUNetTrainerAdan.py", + "sha256": "2b40ee67ce646a73a17f50f091243754253914934de1e10a5e4c0d1274f47967", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 1, + "row": 6793 + }, + { + "path": "nnunetv2/training/nnUNetTrainer/variants/sampling/nnUNetTrainer_probabilisticOversampling.py", + "sha256": "4e06397f1f90cf35bdef04e6c647db81989bf02450333fff3ca0dcc7ffc28051", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 1, + "row": 6904 + }, + { + "path": "nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs.py", + "sha256": "dc1a146aee18adb226b5d5424f896af0f283990020b654be0fbbd003244f6fb9", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 1, + "row": 7204 + }, + { + "path": "nnunetv2/training/nnUNetTrainer/variants/training_length/nnUNetTrainer_Xepochs_NoMirroring.py", + "sha256": "a96bd2ab5b4a924823f963f4dc93ad2fd15550c88510c2ef1ce0f55c5ce9cb37", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 1, + "row": 6737 + }, + { + "path": "nnunetv2/utilities/collate_outputs.py", + "sha256": "e19ee6aaa78037e7d71c6d1d877ca9f3735c5c0129ef6ab5fc51cb59d46d9bb3", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 1, + "row": 5657 + }, + { + "path": "nnunetv2/utilities/crossval_split.py", + "sha256": "2fcd9e124407c9782d155fe7254fa2c1eaadf6204db92d3461ed193f0def5728", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5466 + }, + { + "path": "nnunetv2/utilities/dataset_name_id_conversion.py", + "sha256": "e89daed8a548b704575c11f298cafab34f74e8edde1b448223d2dcb5662476da", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 1, + "row": 7137 + }, + { + "path": "nnunetv2/utilities/ddp.py", + "sha256": "86ccbb7f7506edd7857a06277e8bc4a859822f398c6ad8f64f6c81ca6d048e7c", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 1, + "row": 7442 + }, + { + "path": "nnunetv2/utilities/ddp_allgather.py", + "sha256": "d855405eba9a613896f3c4b86a81a6d5af02e5e89727ce771b69dd9d3ec79390", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 1, + "row": 6462 + }, + { + "path": "nnunetv2/utilities/default_n_proc_DA.py", + "sha256": "24eab4780983dc83280391bb6e47ecf08a3a7dde7aa47ec697e1b845b5ae469f", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 1, + "row": 6328 + }, + { + "path": "nnunetv2/utilities/file_path_utilities.py", + "sha256": "ef777663f5667a49375c0ab805e0ebca4bdd75e90f6ba326a44306017f713fc2", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 1, + "row": 7692 + }, + { + "path": "nnunetv2/utilities/find_class_by_name.py", + "sha256": "d4f56c8229b8ffa483dc5d4d75fe60afb26d23fcb413d3c60ec792279bd204e0", + "language": "Python", + "lines": 174, + "truncated": false, + "block": 1, + "row": 7681 + }, + { + "path": "nnunetv2/utilities/find_objects.py", + "sha256": "c3ef225e25f53b55d53f58abb26d172e61b0c77d2023e56039f623d3880af369", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 1, + "row": 6514 + }, + { + "path": "nnunetv2/utilities/get_network_from_plans.py", + "sha256": "b8512a9c4862c291fc855609d9fcccd8f71e17c62ac08062fa15df80ea20db84", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 1, + "row": 7035 + }, + { + "path": "nnunetv2/utilities/get_network_via_name.py", + "sha256": "3aa0b022359a32a4b294f1a0f96318c5dcc2ad329db16cc25f1b6b359b053693", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 1, + "row": 6820 + }, + { + "path": "nnunetv2/utilities/helpers.py", + "sha256": "b59a9b71a328b9ab09fcfd2db4903b6145130be6d2d8ded5cefa3c2fbc05e83b", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 1, + "row": 5416 + }, + { + "path": "nnunetv2/utilities/json_export.py", + "sha256": "886b79058e166e7f49903f19deee0ff8f7eaacbbbf354ce12ed8ef10399f6639", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 1, + "row": 6482 + }, + { + "path": "nnunetv2/utilities/label_handling/label_handling.py", + "sha256": "c0b6c9df360c4b1ef80e0dc8117d8f098036d7447aaab3034adf154c091e3e19", + "language": "Python", + "lines": 351, + "truncated": false, + "block": 1, + "row": 9132 + }, + { + "path": "nnunetv2/utilities/load_weights_utils.py", + "sha256": "40e01cc50ebaee752696ee16eb30a7907594052533e29627a7d8d0a6869c8161", + "language": "Python", + "lines": 252, + "truncated": false, + "block": 1, + "row": 8634 + }, + { + "path": "nnunetv2/utilities/network_initialization.py", + "sha256": "32a938610ffe927e6ec9434fa876042b15587c6ca4d849ba097e3d11b32e68c1", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 1, + "row": 5398 + }, + { + "path": "nnunetv2/utilities/overlay_plots.py", + "sha256": "84f518aed801db3762911a8c203e52534dba1206bc9b2cad19f064729fb75f43", + "language": "Python", + "lines": 279, + "truncated": false, + "block": 1, + "row": 8761 + }, + { + "path": "nnunetv2/utilities/plans_handling/plans_handler.py", + "sha256": "7b03dc455cf24566688752f7e5a4661643e6ec8c5f93fa61fcba3a9d1d7a89be", + "language": "Python", + "lines": 341, + "truncated": false, + "block": 1, + "row": 9035 + }, + { + "path": "nnunetv2/utilities/pool_utils.py", + "sha256": "15498b5dc6384e52819188131d051149735b6bec724c0930a187354cff756cd9", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 1, + "row": 6618 + }, + { + "path": "nnunetv2/utilities/utils.py", + "sha256": "bb5688579d3675789b7d0cae39601179e774429548e3687e09da119fdde26899", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 1, + "row": 6954 + }, + { + "path": "readme.md", + "sha256": "2e65a0d7eef663398b7e6070a2e4b6f7dfcccd5ef967da8cbc6573c005ecc8e2", + "language": "Text", + "lines": 78, + "truncated": false, + "block": 1, + "row": 11894 + }, + { + "path": "setup.py", + "sha256": "105090a181d2b5356ef8712a44c2a949ab34ce8fbd67e01b5aafb6fb1911a15f", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 1, + "row": 5038 + } + ] +} \ No newline at end of file diff --git a/manifests/11/github.com__aswendt-lab__aidamri.json b/manifests/11/github.com__aswendt-lab__aidamri.json new file mode 100644 index 0000000000000000000000000000000000000000..1610544822120267dea441a66227409c0b3202aa --- /dev/null +++ b/manifests/11/github.com__aswendt-lab__aidamri.json @@ -0,0 +1,984 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/aswendt-lab/aidamri", + "url": "https://github.com/Aswendt-Lab/AIDAmri", + "host": "github.com", + "commit": "e12eb8271bf9b1eca6069808d9d1ba08e421c362", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "ARA/AllenBrainAPI-master/DownloadImageSeries.m", + "sha256": "d824f5de5eec5c33288565f02171738725e2cb55b6bf78122b474b4465291ce4", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 1, + "row": 3134 + }, + { + "path": "ARA/AllenBrainAPI-master/acronym2structureID.m", + "sha256": "653a1d0eb8d6d154b1d6f775f3467193c478c6776d649a089e853b4733e88bd6", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 1, + "row": 3034 + }, + { + "path": "ARA/AllenBrainAPI-master/examples/thalamus.m", + "sha256": "71494e1a643fc71b66f770feffff376d74ca0873607549d1bb00a557def29a20", + "language": "MATLAB", + "lines": 77, + "truncated": false, + "block": 1, + "row": 3382 + }, + { + "path": "ARA/AllenBrainAPI-master/findAllenExperiments.m", + "sha256": "e4d1b1056c7fb0b906feb9b68bad372cafa868a31dd0c3b85d5e4dfb2dd71272", + "language": "MATLAB", + "lines": 102, + "truncated": false, + "block": 1, + "row": 3288 + }, + { + "path": "ARA/AllenBrainAPI-master/getAllenStructureList.m", + "sha256": "095d48f862cab1ad31101afc8a15a6bf60da2851d97ed0cdcc2647da9d2bcf76", + "language": "MATLAB", + "lines": 283, + "truncated": false, + "block": 1, + "row": 4054 + }, + { + "path": "ARA/AllenBrainAPI-master/getInjectionIDfromExperiment.m", + "sha256": "6c43f15acc70e1f1f8c7416c71991ef124f8252d11aa84d64c915cd0803a1de0", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 1, + "row": 3166 + }, + { + "path": "ARA/AllenBrainAPI-master/getProjectionDataFromExperiment.m", + "sha256": "755452435904cce08434074cee8e8dc24185bf9491a373689b6bb42c48769383", + "language": "MATLAB", + "lines": 94, + "truncated": false, + "block": 1, + "row": 3287 + }, + { + "path": "ARA/AllenBrainAPI-master/name2structureID.m", + "sha256": "590ed1ad7ae4574df31e9f24e8b8e1d73ef8c39931a4ebbc5b0fff541bf73a41", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 1, + "row": 3008 + }, + { + "path": "ARA/AllenBrainAPI-master/structureID2name.m", + "sha256": "38ec7b25a754333b390439fead4ddf622ecf85d000458b7121c24920dc37c6b2", + "language": "MATLAB", + "lines": 82, + "truncated": false, + "block": 1, + "row": 3168 + }, + { + "path": "ARA/download_ARA.py", + "sha256": "2a82a95a0f72f2cf4d1c2b83ece8806ccd6e707135c4e1188fbb6966ac65bff4", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 1, + "row": 6607 + }, + { + "path": "ARA/getParentalARA.m", + "sha256": "5c01e565026762d09fa14b5ec97bfd16120f68e736b0bed4822553325732a7e1", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 1, + "row": 2870 + }, + { + "path": "ARA/readXML_Lables.m", + "sha256": "db56b94d8c88ef3e52bb3da60d20aa7547c3f80cc93f88a5b318ce445daabdd3", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 1, + "row": 2446 + }, + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "4b6706eee9a03e323ac1a63c68d4c25249f447c2f742333b12ea680fd6da871a", + "language": "Text", + "lines": 310, + "truncated": false, + "block": 1, + "row": 11981 + }, + { + "path": "bin/2.1_T2PreProcessing/MICO.py", + "sha256": "e0ee852f10621a35e473f9f6bc2592df91af4fa8a4f72acdf65e9eb98c64b0be", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 1, + "row": 6765 + }, + { + "path": "bin/2.1_T2PreProcessing/applyMICO.py", + "sha256": "d8f9b685b52e2bde1663ca30cee7da3a561f8f09face80c0ed1688f466f1517c", + "language": "Python", + "lines": 277, + "truncated": false, + "block": 1, + "row": 8151 + }, + { + "path": "bin/2.1_T2PreProcessing/preProcessing_T2.py", + "sha256": "f5e11d36bf7d936f8d466b3c678831490e3e9cdb961e61be32f1e051ddba2d50", + "language": "Python", + "lines": 307, + "truncated": false, + "block": 1, + "row": 8495 + }, + { + "path": "bin/2.1_T2PreProcessing/registration_T2.py", + "sha256": "0d84ff43e6a9c57566b8c2907e2b403810b415f03e4a86394800941682f6b41d", + "language": "Python", + "lines": 293, + "truncated": false, + "block": 1, + "row": 8935 + }, + { + "path": "bin/2.1_T2PreProcessing/t2_value_extraction.py", + "sha256": "6110a533844aa19fc7e3c1bc741dc12cf89a1fd3f0b79d36c4653a14c7187ed0", + "language": "Python", + "lines": 139, + "truncated": false, + "block": 1, + "row": 7713 + }, + { + "path": "bin/2.2_DTIPreProcessing/MICO.py", + "sha256": "f5b9d8c960c404c0a3f61684aba8b63f23aeff0c62ab48e3610e81ff7908e602", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 1, + "row": 6715 + }, + { + "path": "bin/2.2_DTIPreProcessing/anisodiff.py", + "sha256": "b101f2c5321eaace711861bdf962de5735845c5bf94c88be23773f47bd9cfe1b", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 1, + "row": 6647 + }, + { + "path": "bin/2.2_DTIPreProcessing/applyMICO.py", + "sha256": "eb75be482649bb7dbfe36b096fe2dd94f080f417941a0c58c6816259faa51f97", + "language": "Python", + "lines": 260, + "truncated": false, + "block": 1, + "row": 8046 + }, + { + "path": "bin/2.2_DTIPreProcessing/averageb0.py", + "sha256": "9c59fea6a9a9aaa32e378e48ec002fb644018cc7e02bf879f77f87cd74f4f188", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 1, + "row": 7582 + }, + { + "path": "bin/2.2_DTIPreProcessing/extracted_brain_output.py", + "sha256": "45ba92e9e91641fc21138de7f26130b058a4b5cd2ce433ffdb6445affaa453bf", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 1, + "row": 5999 + }, + { + "path": "bin/2.2_DTIPreProcessing/preProcessing_DTI.py", + "sha256": "8bf8d70c92171f2e3c1316800d5ee6c83f99d208378aee024eea4e5419c6b04c", + "language": "Python", + "lines": 570, + "truncated": false, + "block": 1, + "row": 9330 + }, + { + "path": "bin/2.2_DTIPreProcessing/registration_DTI.py", + "sha256": "8b8d6416890ca588d5ae3ddb3c7f9014638864235485c2aa22f5c88b2f02dcc7", + "language": "Python", + "lines": 395, + "truncated": false, + "block": 1, + "row": 9241 + }, + { + "path": "bin/2.3_fMRIPreProcessing/preProcessing_fMRI.py", + "sha256": "0b826a3afe640736fbdfb3e98efef27844563f2852c0f00f524d1db348622494", + "language": "Python", + "lines": 294, + "truncated": false, + "block": 1, + "row": 8540 + }, + { + "path": "bin/2.3_fMRIPreProcessing/registration_rsfMRI.py", + "sha256": "93c0db466d66ba911191bc90ce08873da5c90855b2c3605aca2a74ca68c76cf7", + "language": "Python", + "lines": 380, + "truncated": false, + "block": 1, + "row": 9252 + }, + { + "path": "bin/3.1_T2Processing/brummerSNR.py", + "sha256": "f8930da88658cae9c1bb987ff28076d53452c2748fafd17f44b5a51ba3698400", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 1, + "row": 6116 + }, + { + "path": "bin/3.1_T2Processing/changSNR.py", + "sha256": "b4ad53fa9b2ed47b615dd1408e6446ff6e7b0e4f2e83a80de1c4de7e2832e66d", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 1, + "row": 6205 + }, + { + "path": "bin/3.1_T2Processing/getIncidenceMap.py", + "sha256": "8fbd50ab526600da402644b291ed184921e5c4da9918bc784bb0546933fefd18", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 1, + "row": 7841 + }, + { + "path": "bin/3.1_T2Processing/getIncidenceSize.py", + "sha256": "3ecfd8f33ad255b7c52a03623d2a5b652e3b63055dd06b51f35927c1d87aad3a", + "language": "Python", + "lines": 296, + "truncated": false, + "block": 1, + "row": 8957 + }, + { + "path": "bin/3.1_T2Processing/getIncidenceSize_par.py", + "sha256": "ebb6d1e08744365496a513ed59fdf75361b0d5a83a7c650998428066115a185d", + "language": "Python", + "lines": 296, + "truncated": false, + "block": 1, + "row": 8989 + }, + { + "path": "bin/3.1_T2Processing/sijbersSNR.py", + "sha256": "2f20ec8fd97cb4e2fbd8320de57e6c0460e3c4ddcfecb34935629fc6fc0266fd", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 1, + "row": 6174 + }, + { + "path": "bin/3.2.1_DTIdata_extract/DTIdata_extract.py", + "sha256": "6abb37002bb21653d24a9edcc532cc30c1eb307249acb49ea2089c0f05dcfe0b", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 1, + "row": 7054 + }, + { + "path": "bin/3.2.1_DTIdata_extract/iterativeRun.py", + "sha256": "875d2d0654ccd8014911d416241ba9f6c53701b72a8010fd703eb50d33f20c7f", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 1, + "row": 5754 + }, + { + "path": "bin/3.2.1_DTIdata_extract/iterativeRun_MA.py", + "sha256": "ace333cdcd8a1b21d4c66e48241d11e4ed89b6736a3242b719e17275bc3d3770", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 1, + "row": 6441 + }, + { + "path": "bin/3.2.1_DTIdata_extract/iterativeRun_MA_peri-infarct_ROIs.py", + "sha256": "ed8ed3859c88bd5b8e4759e40c9a6c7496cc6858eed1fd7974b54b73b384d78f", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 1, + "row": 6438 + }, + { + "path": "bin/3.2.1_DTIdata_extract/iterativeRun_MA_stroke_mask.py", + "sha256": "2ffb9796f8e2dcffdd9d8811fd7c24c9154356b0f81b64cfdff67d3fa33bf64c", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 1, + "row": 6433 + }, + { + "path": "bin/3.2_DTIConnectivity/dsi_main.py", + "sha256": "7af1de52247ba7c06e0a7d211f44db6930abd650ed5aab7329128f87cf34eb63", + "language": "Python", + "lines": 354, + "truncated": false, + "block": 1, + "row": 8940 + }, + { + "path": "bin/3.2_DTIConnectivity/dsi_tools.py", + "sha256": "08d37ad6ae8a05112d89ddd37e4e51e6b557455b93ee7d79adbea463bc3728a7", + "language": "Python", + "lines": 888, + "truncated": false, + "block": 1, + "row": 9651 + }, + { + "path": "bin/3.2_DTIConnectivity/plotDTI_mat.py", + "sha256": "580355dd358b41224aa6ba473cb66234905a9e69c1842b125f9a4d53c2f74fba", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 1, + "row": 7042 + }, + { + "path": "bin/3.3_fMRIActivity/correlate_matrix.py", + "sha256": "b8e0e91344288bf34549f16df0130e3ecefeaa852cafd9438e99345ce8a40269", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 1, + "row": 5660 + }, + { + "path": "bin/3.3_fMRIActivity/correlate_seed_voxels.py", + "sha256": "6eba557c4727210ca93d01089ff0a71f1cce81880151795248e35e2a55943371", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 1, + "row": 7722 + }, + { + "path": "bin/3.3_fMRIActivity/create_seed_rois.py", + "sha256": "a91eebac0bbb8d38ddd06d638a71bcfc6e172374b0f45826482bd677aa67a530", + "language": "Python", + "lines": 271, + "truncated": false, + "block": 1, + "row": 8438 + }, + { + "path": "bin/3.3_fMRIActivity/fsl_mean_ts.py", + "sha256": "4a55a7f640195b13f7017bc170b00573b5f631f50bd444524e47d0d8cbe6a729", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 1, + "row": 7879 + }, + { + "path": "bin/3.3_fMRIActivity/getRegrTable.py", + "sha256": "dd29e5e9786b422f89e367f0189f49ba359bc0c26e1eb8b7964833f51fe17dd1", + "language": "Python", + "lines": 134, + "truncated": false, + "block": 1, + "row": 7552 + }, + { + "path": "bin/3.3_fMRIActivity/getSingleRegTable.py", + "sha256": "d12578380b72e72e54d9e92790bf939b68f56071be8aacac7169acac163b6970", + "language": "Python", + "lines": 137, + "truncated": false, + "block": 1, + "row": 7529 + }, + { + "path": "bin/3.3_fMRIActivity/i32Reader.py", + "sha256": "8b1d59264f649282cb25c375a9e089b6f8a516382820dee5d345c72d01db122e", + "language": "Python", + "lines": 152, + "truncated": false, + "block": 1, + "row": 7512 + }, + { + "path": "bin/3.3_fMRIActivity/parReader.py", + "sha256": "1402b62dec05c57cbdc345a1cba1cc262f18d71de64c27fdb5bfbad4c9d91007", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 1, + "row": 5836 + }, + { + "path": "bin/3.3_fMRIActivity/peakdet.py", + "sha256": "6f43738892045307bd9c8a8c63f3f684c4b6521c84a50c17337b7775558285cf", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 1, + "row": 6447 + }, + { + "path": "bin/3.3_fMRIActivity/plotfMRI_mat.py", + "sha256": "41052525863d55887e07c11bb61b335bdd01709d2d7a045d9714eea4d6dc5a50", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 1, + "row": 6344 + }, + { + "path": "bin/3.3_fMRIActivity/process_fMRI.py", + "sha256": "2a033261e3de80ac8826e4f00b3ef6a0650063d0e18857421cd68556b990ee16", + "language": "Python", + "lines": 406, + "truncated": false, + "block": 1, + "row": 8960 + }, + { + "path": "bin/3.3_fMRIActivity/regress.py", + "sha256": "0f8b1aa40bfb0f4a35283701259315a549ff5bba9ad3d273499ca1fd67c89709", + "language": "Python", + "lines": 345, + "truncated": false, + "block": 1, + "row": 8791 + }, + { + "path": "bin/4.1_T2mapPreProcessing/MICO.py", + "sha256": "607fec04d0be32d2eca61ac19dd395f9274ee047887149bc6541aead47cf09a5", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 1, + "row": 6617 + }, + { + "path": "bin/4.1_T2mapPreProcessing/anisodiff.py", + "sha256": "b101f2c5321eaace711861bdf962de5735845c5bf94c88be23773f47bd9cfe1b", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 1, + "row": 6647 + }, + { + "path": "bin/4.1_T2mapPreProcessing/applyMICO.py", + "sha256": "bed203c11527bb228a57c367468c9afe8ba849c0ddbecff7fd02ab8c13985fb0", + "language": "Python", + "lines": 219, + "truncated": false, + "block": 1, + "row": 7654 + }, + { + "path": "bin/4.1_T2mapPreProcessing/preProcessing_T2MAP.py", + "sha256": "fd0f456028fb37f83cf257b00d76c151d16a4d6140c3485617c4b3d8bb6fd2e5", + "language": "Python", + "lines": 255, + "truncated": false, + "block": 1, + "row": 8380 + }, + { + "path": "bin/4.1_T2mapPreProcessing/registration_T2MAP.py", + "sha256": "403ee266700260d2933e9d778ae696356d15965f6cec8acb3a8a9cb1074f2799", + "language": "Python", + "lines": 241, + "truncated": false, + "block": 1, + "row": 8593 + }, + { + "path": "bin/4.1_T2mapPreProcessing/t2map_data_extract.py", + "sha256": "35e3b059b998dea06b17e0e1807cfbf3e87cd9a42ea370a2cc13aeaf29953b00", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 1, + "row": 7434 + }, + { + "path": "bin/5.1_ROI_analysis/01_dilate_mask_process.py", + "sha256": "76447abdf39ca54a55bf48193e243b6449168d5ca3cda94be2c2928f6733def3", + "language": "Python", + "lines": 229, + "truncated": false, + "block": 1, + "row": 8461 + }, + { + "path": "bin/5.1_ROI_analysis/02_apply_xfm_process.py", + "sha256": "ff078be81980b464b9d0fc06deb9076371dd4b6c297b1633012302c7f4b23bfa", + "language": "Python", + "lines": 345, + "truncated": false, + "block": 1, + "row": 9194 + }, + { + "path": "bin/5.1_ROI_analysis/03_create_seed_rois_process.py", + "sha256": "87abd45106d1f52bda1424ba3cbf56c74b8cc5d3e03acbe8960e7797ed3d1cc9", + "language": "Python", + "lines": 252, + "truncated": false, + "block": 1, + "row": 8807 + }, + { + "path": "bin/5.1_ROI_analysis/04_examine_rois.py", + "sha256": "52f38477bcaf4fd74ce7edb488b616133d9e9e9f52ce37f7801489cd0ff7266a", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 1, + "row": 6206 + }, + { + "path": "bin/5.1_ROI_analysis/apply_xfm.py", + "sha256": "077ed6e74b004e147074f30e2b848b7645e4594b0e9ff80d3bf5c7645aa889b7", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 1, + "row": 7680 + }, + { + "path": "bin/5.1_ROI_analysis/create_seed_rois.py", + "sha256": "b9ea4791ef28d54cc2b000e762d7c4e221341e10217feeb240e4b10d20f938fd", + "language": "Python", + "lines": 179, + "truncated": false, + "block": 1, + "row": 7783 + }, + { + "path": "bin/5.1_ROI_analysis/dilate_mask.py", + "sha256": "8764eea3b9e70a66d44bee32d4bc8b614ce2e0ecc30cf9b229ad1829ccfe223a", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 1, + "row": 6229 + }, + { + "path": "bin/5.1_ROI_analysis/fsl_mean_ts.py", + "sha256": "33c4e9d3ad3dc051f09a9a37ff900d7c438d4f465a0e2d51d3f0595ed6e2d665", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 1, + "row": 6696 + }, + { + "path": "bin/5.1_ROI_analysis/proc_tools.py", + "sha256": "b6b4db66f92c2470c20ad6fefe2a58ae8589c154e37f74162201b11a948551d3", + "language": "Python", + "lines": 257, + "truncated": false, + "block": 1, + "row": 8727 + }, + { + "path": "bin/5.1_ROI_analysis/pv_parser.py", + "sha256": "c58055f19f3bb409c729b6170dda6b433a7663d3a3861f58983a7c5fd24c2f7e", + "language": "Python", + "lines": 416, + "truncated": false, + "block": 1, + "row": 8872 + }, + { + "path": "bin/5.1_ROI_analysis/pv_reader.py", + "sha256": "79dc5c3381eef29fabaedb4a8c7a16bc872fc6fae8adcf6a785385a8b72a3a12", + "language": "Python", + "lines": 490, + "truncated": false, + "block": 1, + "row": 9304 + }, + { + "path": "bin/PV2NIfTiConverter/Alternative_pv_reader/pv_parser.py", + "sha256": "c58055f19f3bb409c729b6170dda6b433a7663d3a3861f58983a7c5fd24c2f7e", + "language": "Python", + "lines": 416, + "truncated": false, + "block": 1, + "row": 8872 + }, + { + "path": "bin/PV2NIfTiConverter/Alternative_pv_reader/pv_reader.py", + "sha256": "79dc5c3381eef29fabaedb4a8c7a16bc872fc6fae8adcf6a785385a8b72a3a12", + "language": "Python", + "lines": 490, + "truncated": false, + "block": 1, + "row": 9304 + }, + { + "path": "bin/PV2NIfTiConverter/P2_IDLt2_mapping.py", + "sha256": "ebd7ea6d4adaf7b7f9c93523fc06491a5edb29ac7b29d9f4ed803ce14b1f592a", + "language": "Python", + "lines": 341, + "truncated": false, + "block": 1, + "row": 8815 + }, + { + "path": "bin/PV2NIfTiConverter/ReferenceMethods/brummerSNR.py", + "sha256": "585156349e1c3f9feaf6f7121cc88bf378227b622d6715f380bdef5923871764", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 1, + "row": 6164 + }, + { + "path": "bin/PV2NIfTiConverter/ReferenceMethods/changSNR.py", + "sha256": "c6cdf1690284a1d878da293893ef5b5558f62e0bde007d4067a8f2603d721a6b", + "language": "Python", + "lines": 83, + "truncated": false, + "block": 1, + "row": 6263 + }, + { + "path": "bin/PV2NIfTiConverter/ReferenceMethods/getSNR.py", + "sha256": "15faa3a9ce3639623381e1551f17fcd350b607048bc335ae94e4412ade48424a", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 1, + "row": 6457 + }, + { + "path": "bin/PV2NIfTiConverter/ReferenceMethods/sijbersSNR.py", + "sha256": "94d5a9fd409565eaec91bf725f4a00ff6231d8df4f217daaa0a835b17719a99e", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 1, + "row": 6213 + }, + { + "path": "bin/PV2NIfTiConverter/dict2xml.py", + "sha256": "748dd584281599ad2ef571b00a02f82563d88271e2d7f67239ca419943b336ea", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 1, + "row": 6506 + }, + { + "path": "bin/PV2NIfTiConverter/pv_conv2Nifti.py", + "sha256": "c64b43ad4a8d01a76270ffaefb6263a3438ad78c4a0d63a2e953e2feeecec8e5", + "language": "Python", + "lines": 385, + "truncated": false, + "block": 1, + "row": 9099 + }, + { + "path": "bin/PV2NIfTiConverter/pv_conv2Nifti_bval_bvec.py", + "sha256": "f5e982660215290f274ce9be5b1f2820e71a3142ad3c68a3a1d479775ab571a0", + "language": "Python", + "lines": 385, + "truncated": false, + "block": 1, + "row": 9089 + }, + { + "path": "bin/PV2NIfTiConverter/pv_parseBruker_md_np.py", + "sha256": "c250eedcf5f48c75ff9c3e2f5e1a30e778f24fb1ae1e6ace4b38f0206e31e8cf", + "language": "Python", + "lines": 344, + "truncated": false, + "block": 1, + "row": 8758 + }, + { + "path": "bin/__init__.py", + "sha256": "93d37ac6efcf3d452dbf157e9b7467582dbf2bb634ef8144d0b966f33e09e725", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4990 + }, + { + "path": "bin/batchProc.py", + "sha256": "f48e677ee9ec83584b6805e8630f155135bb08c2dd080fda79f96122380e8aaf", + "language": "Python", + "lines": 1542, + "truncated": false, + "block": 1, + "row": 9814 + }, + { + "path": "bin/common/__init__.py", + "sha256": "effd68d153376cd94c60d92997ee4000419da5b7cd603dd1b350429cd6cde0d6", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 5049 + }, + { + "path": "bin/common/artifact_manifest.py", + "sha256": "002e300e143736fe080d9b3894b49ae667b8a4b9476d8e2426f985e72b21068e", + "language": "Python", + "lines": 311, + "truncated": false, + "block": 1, + "row": 8625 + }, + { + "path": "bin/common/bet.py", + "sha256": "1322be1b5fd79c177f8e1acce777769a8ddd89bd644eb3d1369348c42791093d", + "language": "Python", + "lines": 475, + "truncated": false, + "block": 1, + "row": 9128 + }, + { + "path": "bin/common/fmri_metadata.py", + "sha256": "d2442b4a6738ebe82015a357c85ab10ce6017b3227e1f42f152e070faaf17d8b", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 1, + "row": 6610 + }, + { + "path": "bin/common/script_logging.py", + "sha256": "46da1e1dde372d1e3f56854990996beb7250d1d7069f583145d93e592e7983c3", + "language": "Python", + "lines": 136, + "truncated": false, + "block": 1, + "row": 7268 + }, + { + "path": "bin/conv2Nifti_auto.py", + "sha256": "327c3480e5c92e03a7446388bca4cd0d48a063ab64123f43456f0ba00991e26b", + "language": "Python", + "lines": 890, + "truncated": false, + "block": 1, + "row": 9718 + }, + { + "path": "bin/helper_tools/DistributeStrokeMasks.py", + "sha256": "b486b7a2d12fe6dcf9d6ad9beb7f258d3b7f0abefae01b8ec9e67935d77ff84a", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 1, + "row": 6828 + }, + { + "path": "bin/helper_tools/MRI_files_summarizer.py", + "sha256": "253a327543f8a7cba7dc6a56d46eba88123f29e6b184a15b1ee362cc42b6a038", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 1, + "row": 6282 + }, + { + "path": "bin/helper_tools/ReorientBatch.py", + "sha256": "9485d0042b59bc4a040e25a78926794d09728a24e3a988f43a84c8a717031dc0", + "language": "Python", + "lines": 564, + "truncated": false, + "block": 1, + "row": 9177 + }, + { + "path": "bin/helper_tools/Reset_proc_folder.py", + "sha256": "3a4087d7f193b4e613835e98c97b2a12d05d675a3ce559d77405c6a3a1ac4dc5", + "language": "Python", + "lines": 1104, + "truncated": false, + "block": 1, + "row": 9719 + }, + { + "path": "bin/helper_tools/adjustbvecRep.py", + "sha256": "40c7084010e81b05bb9ea96be9bfcb2fb9fe27f761e8cb0cddef182fdf5847e0", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 1, + "row": 7037 + }, + { + "path": "bin/helper_tools/batch_qc_reports.py", + "sha256": "3f72e769ed7cacde4807664aa83b420a497ede553d95023a07dd37c70a9b949c", + "language": "Python", + "lines": 709, + "truncated": false, + "block": 1, + "row": 9591 + }, + { + "path": "bin/helper_tools/crop_T2.py", + "sha256": "d9e1b8f397024321645ffe87da74c103cb2246388466309951614bdf46bdfa4e", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 1, + "row": 6983 + }, + { + "path": "bin/helper_tools/fieldmap_json_edit.py", + "sha256": "55c8ff7c64e5adbc6e3f5f04c5cecec22489c7d70b235d00e590426ff8481293", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 1, + "row": 6785 + }, + { + "path": "bin/helper_tools/getAtlasRegionSize_BIDS.py", + "sha256": "8d56a2182a003f2105b87a69dd6d45313c6b90e8dd50d1dda880ad5070219e13", + "language": "Python", + "lines": 301, + "truncated": false, + "block": 1, + "row": 8537 + }, + { + "path": "bin/helper_tools/getAtlasRegionSize_noBIDS.py", + "sha256": "b1178c89f7be5640612f8b3e5cc3148204e5ac1eeabfacdaa65031344a168da0", + "language": "Python", + "lines": 262, + "truncated": false, + "block": 1, + "row": 8494 + }, + { + "path": "bin/helper_tools/plot_sourcedata_niftis.py", + "sha256": "845762fd35d0f59377e1f0b8e077737fa6714a08eab3ee529f325606278f5238", + "language": "Python", + "lines": 309, + "truncated": false, + "block": 1, + "row": 8955 + }, + { + "path": "bin/helper_tools/remove_carets_spaces.sh", + "sha256": "35d0e4f637717fa3221a0f17f81ed839981a27322176d051f371236a91799383", + "language": "Shell", + "lines": 33, + "truncated": false, + "block": 1, + "row": 11577 + }, + { + "path": "bin/helper_tools/reset_naming.py", + "sha256": "b90135286a2a0b074f10fa1355022cbf96e9f1a0cf1ae6d255f7f8817c253a96", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 1, + "row": 6727 + }, + { + "path": "docs/AIDAmri_workshop.ipynb", + "sha256": "2244dd6aef1973d3b442d0feb002e33ad3ac6a3285882bd87c218390677997d7", + "language": "Jupyter", + "lines": 378, + "truncated": false, + "block": 1, + "row": 1987 + }, + { + "path": "install/aidamri_entrypoint.sh", + "sha256": "e03f47c937f986976db0229c368eac82b0608ad8c363813af4747dddc0537f5b", + "language": "Shell", + "lines": 10, + "truncated": false, + "block": 1, + "row": 11144 + }, + { + "path": "install/fslinstaller_mod.py", + "sha256": "3827de2da522d9b5bc33b63a3500573ff7985f61641a81b54553e6499c301db3", + "language": "Python", + "lines": 3102, + "truncated": false, + "block": 1, + "row": 9860 + }, + { + "path": "install/install_immv.sh", + "sha256": "0a5976be62948ff6f88727bf2e10cd31a26a5670ba2b728d2a03cad93ee9fc04", + "language": "Shell", + "lines": 29, + "truncated": false, + "block": 1, + "row": 11437 + }, + { + "path": "install/write_aidamri_git_info.sh", + "sha256": "6ccc1ff2bc616bd7b880a5240cbd937352947de2e1578b255a8313b377b746fe", + "language": "Shell", + "lines": 103, + "truncated": false, + "block": 1, + "row": 11707 + } + ] +} \ No newline at end of file diff --git a/manifests/11/github.com__noamteyssier__idea.json b/manifests/11/github.com__noamteyssier__idea.json new file mode 100644 index 0000000000000000000000000000000000000000..fcdb345e502ef1f8a8d0cee3abaac43323269d96 --- /dev/null +++ b/manifests/11/github.com__noamteyssier__idea.json @@ -0,0 +1,84 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/noamteyssier/idea", + "url": "https://github.com/noamteyssier/idea", + "host": "github.com", + "commit": "e4027495e73201ac305c96e3f7708575c2c1de35", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "bb46271317784b53c904de34e5dbdd5cf8a5908110b5564ff283840e6252334c", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2127 + }, + { + "path": "README.md", + "sha256": "595f5ae024a04143eb18e9aad4c3b1cd273e781052331f01a8ae0fe61ac0b36e", + "language": "Text", + "lines": 23, + "truncated": false, + "block": 1, + "row": 11799 + }, + { + "path": "docs/conf.py", + "sha256": "cc1cd2fdf5f1aaba7ff7dc897824e17bcd3dfb69ff2da3730ef993105894ac60", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 1, + "row": 5883 + }, + { + "path": "idea/__init__.py", + "sha256": "fc8389a3795768bafb0be7ceaf110cf9d8b532cb2c6080b233b7a0a6f08c0736", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 1, + "row": 5157 + }, + { + "path": "idea/_constants.py", + "sha256": "9735e5fc902f28dd5fd29809dd75a72eca7f90c33c6c5f8e67dd52a2f7f90283", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 1, + "row": 5146 + }, + { + "path": "idea/_go.py", + "sha256": "7accd8b8484319342792c57161f6f13343fc8b3564d225023bbc0e9ba60406f9", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 1, + "row": 6419 + }, + { + "path": "idea/_idea.py", + "sha256": "7c9c3de3f46450dff5e9bf0aa4c663ce1837081bdfb59825d67eeab09ab614d4", + "language": "Python", + "lines": 424, + "truncated": false, + "block": 1, + "row": 9176 + }, + { + "path": "idea/_utils.py", + "sha256": "2eb6919f6424b2082b48f3f503de496f4bfd47f4c5ed931bfebda3cbf0bc9984", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 1, + "row": 5665 + } + ] +} \ No newline at end of file diff --git a/manifests/11/github.com__unimelbmdap__snakemake_paper_demo_workflow_data.json b/manifests/11/github.com__unimelbmdap__snakemake_paper_demo_workflow_data.json new file mode 100644 index 0000000000000000000000000000000000000000..f9d8fe7f383666542cd4ff9fd71816748f33683d --- /dev/null +++ b/manifests/11/github.com__unimelbmdap__snakemake_paper_demo_workflow_data.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/unimelbmdap/snakemake_paper_demo_workflow_data", + "url": "https://github.com/unimelbmdap/snakemake_paper_demo_workflow_data", + "host": "github.com", + "commit": "981e067de5487d791959347c8673c033070a85da", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "abc73fa560315206311163d7e7c0469eee6b50d984d88ba60a8335c49073dae5", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2137 + }, + { + "path": "README.md", + "sha256": "ff4c888fb4fd4a53d7abb3de2c90fff2a05572ba3bf099ef99b13372f9e536ac", + "language": "Text", + "lines": 45, + "truncated": false, + "block": 1, + "row": 11813 + } + ] +} \ No newline at end of file diff --git a/manifests/11/zenodo__20103609.json b/manifests/11/zenodo__20103609.json new file mode 100644 index 0000000000000000000000000000000000000000..191dab6ca826930d01eb8e26a0266dbde5fafa9c --- /dev/null +++ b/manifests/11/zenodo__20103609.json @@ -0,0 +1,750 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:20103609", + "url": "https://doi.org/10.5281/zenodo.20103609", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "adce9ef65be00334b2cb992ead71a7150b984865784364b8526d8317217d1ac0", + "language": "Text", + "lines": 318, + "truncated": false, + "block": 1, + "row": 11969 + }, + { + "path": "mmVelo_tutorial/src/dataset.py", + "sha256": "c28d507291d1544cd6919bffbec44622c7591807465b1a849f03a317a1f1204a", + "language": "Python", + "lines": 226, + "truncated": false, + "block": 1, + "row": 8748 + }, + { + "path": "mmVelo_tutorial/src/funcs.py", + "sha256": "e72dfc40590b59ca2748d589922ce08f4d52dba12e7009bdfc3484dc31685b43", + "language": "Python", + "lines": 115, + "truncated": false, + "block": 1, + "row": 7191 + }, + { + "path": "mmVelo_tutorial/src/models.py", + "sha256": "fdfda3c1b404789cfd4cbdba2fe41d59ba16e0e3d5cf5cbc1baabd2fe245464d", + "language": "Python", + "lines": 556, + "truncated": false, + "block": 1, + "row": 9462 + }, + { + "path": "mmVelo_tutorial/src/modules.py", + "sha256": "e4276b13821cfef7e9aaac60643af64c6f1b776610d4a11b936dc7a7063e0403", + "language": "Python", + "lines": 201, + "truncated": false, + "block": 1, + "row": 7807 + }, + { + "path": "mmVelo_tutorial/src/streamlineplot.py", + "sha256": "70951692c42e6777b26d3e4016ab0c8b084a50d8dc4423cb6657b715b11ec305", + "language": "Python", + "lines": 1722, + "truncated": false, + "block": 1, + "row": 9808 + }, + { + "path": "mmVelo_tutorial/src/train.py", + "sha256": "b281d488392060d076773c69b6778cafd14ba47418e4c062027331454b24608e", + "language": "Python", + "lines": 265, + "truncated": false, + "block": 1, + "row": 8734 + }, + { + "path": "mmVelo_tutorial/src/utils.py", + "sha256": "103fadd103ed3765be035ceb71d86b7a9601362a3f96d864d34b47dafc230d4e", + "language": "Python", + "lines": 938, + "truncated": false, + "block": 1, + "row": 9779 + }, + { + "path": "mmVelo_tutorial/tutorial.ipynb", + "sha256": "6b8c15aa81d15237bf08d7397e1b23119afb6062157399a66398eac85604c2d4", + "language": "Jupyter", + "lines": 110, + "truncated": false, + "block": 1, + "row": 1781 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_E18_mose_brain/000_performance_evaluation.py", + "sha256": "1a4e20f731ecc7816d60ae0d68392fcc7f30950128beb2404b6289b533fdcdac", + "language": "Python", + "lines": 252, + "truncated": false, + "block": 1, + "row": 8713 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_E18_mose_brain/00_get_inferred_data.py", + "sha256": "ca252efc8b6a71c4d9dbe45f60ec9149ca276edfc80cb71057a0a95c9f5440f3", + "language": "Python", + "lines": 237, + "truncated": false, + "block": 1, + "row": 8651 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_E18_mose_brain/01_clustering.py", + "sha256": "c6cbeb99ec1f291bb4c46ef8ccfaec1040315c5d14c272608811fc2de2f8d01d", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 1, + "row": 7808 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_E18_mose_brain/02_pseudotime.py", + "sha256": "ff3ab3d65a499302ed12237a2d69cbddf9418ff0473be2a40e897afb1d7f5549", + "language": "Python", + "lines": 236, + "truncated": false, + "block": 1, + "row": 8724 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_E18_mose_brain/03_peak_gene_linkage.py", + "sha256": "ebf0a66f982d7656b8b1d558ab5d4a3374bca395922bd82aa37f3741424b8818", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 1, + "row": 6183 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_E18_mose_brain/04_plot_expr_umap.py", + "sha256": "d94bfc818bffd42f391bbde687212c64c9e40030731d87d0c98e530de2e8200d", + "language": "Python", + "lines": 274, + "truncated": false, + "block": 1, + "row": 8787 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_E18_mose_brain/04_plot_expr_umap_for_fig.py", + "sha256": "c11369a1bb989a1b93f4c8de95cf55e9a38126c5d86e5caab74e76c73e92db6b", + "language": "Python", + "lines": 391, + "truncated": false, + "block": 1, + "row": 9339 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_E18_mose_brain/05_peak_annotation.py", + "sha256": "d777805a4fa26a17aa3b77dbe060d355cfca57c3a65a8b0efaf151bec050f2ed", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 1, + "row": 7891 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_E18_mose_brain/06_time_lag.py", + "sha256": "1b37a91e1a3e76505922fbeace2d57fb6c79ac7ca05276562f66dabdd650750e", + "language": "Python", + "lines": 365, + "truncated": false, + "block": 1, + "row": 9141 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_E18_mose_brain/06_time_lag_clustering.py", + "sha256": "e23826efc886744216723dbf11fdc16cadf8f9647043ecfc3f43db76a9eec005", + "language": "Python", + "lines": 242, + "truncated": false, + "block": 1, + "row": 8487 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_E18_mose_brain/06_time_lag_clustering_preliminary.py", + "sha256": "2b69d4c74268c2b5046547cdb20ada5620bc28bdb99b2b47e49ec13374cd5583", + "language": "Python", + "lines": 201, + "truncated": false, + "block": 1, + "row": 8084 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_E18_mose_brain/06_time_lag_clustering_sep_concat.py", + "sha256": "ac2e60f8102a64d18aaae6f291e26abd6352f4b4dab7eae18de3059ee4d6d973", + "language": "Python", + "lines": 294, + "truncated": false, + "block": 1, + "row": 8721 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_E18_mose_brain/06_time_lag_confidence.py", + "sha256": "2da6c843ffa493728a17ed7bbf4fec2cf3cab2319c65bc060269f17d1de36c84", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 1, + "row": 8167 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_E18_mose_brain/06_time_lag_ipc.py", + "sha256": "b9a5b45d04b0113241426c794fa5829d826b6314812e74673c1083f541cd1488", + "language": "Python", + "lines": 366, + "truncated": false, + "block": 1, + "row": 9160 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_E18_mose_brain/06_time_lag_leiden.py", + "sha256": "a9bc812b2b09f2035fbc109b83562afa5318f2f4963288996a6ad044e2f9ee9f", + "language": "Python", + "lines": 594, + "truncated": false, + "block": 1, + "row": 9530 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_E18_mose_brain/06_time_lag_naive_heatmap.py", + "sha256": "d80cfec971e84280be857cb7597b89c2a35fe9406ecfef877320bd6376765306", + "language": "Python", + "lines": 755, + "truncated": false, + "block": 1, + "row": 9639 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_E18_mose_brain/07_leiden_promoter.py", + "sha256": "232326df52baecf4e5d72c911bab5514c1c2ce86087429a584d55f4ccf3b82a0", + "language": "Python", + "lines": 206, + "truncated": false, + "block": 1, + "row": 8165 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_E18_mose_brain/07_motif_velocity.py", + "sha256": "fa00931a4a007829a8732f7b14a9ab0474fddfdea076cf7dc95c99bdf439b9b4", + "language": "Python", + "lines": 445, + "truncated": false, + "block": 1, + "row": 9204 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_E18_mose_brain/08_benchmarking_latent.py", + "sha256": "67859afe90fa340592e6921d1e190f41bb1da87630a2f8e05126c9a3588e210f", + "language": "Python", + "lines": 440, + "truncated": false, + "block": 1, + "row": 9416 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_E18_mose_brain/09_dadt_clustering_heatmap.py", + "sha256": "3e33220052c270e204268beb1cada49d5a5f023803dd93e6e601976b64fd2bd0", + "language": "Python", + "lines": 361, + "truncated": false, + "block": 1, + "row": 9100 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_E18_mose_brain/09_dadt_clustering_heatmap_for_fig.py", + "sha256": "cbfb15d506fa5338bfc4d6eb4a970d8160d94ab31329b84d503faab2460d5447", + "language": "Python", + "lines": 368, + "truncated": false, + "block": 1, + "row": 9130 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_E18_mose_brain/10_streamline_plot.py", + "sha256": "7554c4d78115cf9d4ec371ca74dec3e8b25fcb56142969d8a9208f27cbec8026", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 1, + "row": 7441 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_E18_mose_brain/11_neurod2_modality.py", + "sha256": "c11c331e52deb8aa2e3f1759a5a99cae8e9df451ba9fde8ff7ec9c88dce69efd", + "language": "Python", + "lines": 528, + "truncated": false, + "block": 1, + "row": 9427 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_E18_mose_brain/12_dadt_clustering_for_great.py", + "sha256": "10aae1bf5177615bc433104595b73dd206cc2c2cd13004fbcfa52ad8998f424b", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 1, + "row": 6157 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_E18_mose_brain/20_mmvelo_ablation_analysis.py", + "sha256": "5315311535aadac7d63df5f2e560ec1c9227bebaadbc2b00cb177673bdf64a12", + "language": "Python", + "lines": 673, + "truncated": false, + "block": 1, + "row": 9519 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_E18_mose_brain/21_clusterwise_mean_velocity.py", + "sha256": "b7a9b45b043b735682a1cbd7806d765e87630c54d151770844a0893da7f69005", + "language": "Python", + "lines": 214, + "truncated": false, + "block": 1, + "row": 8266 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_human_brain/000_performance_evaluation.py", + "sha256": "eaef87494ccea7f40a72f5440f1d65588b90211d8853c68e2c894596913fe760", + "language": "Python", + "lines": 385, + "truncated": false, + "block": 1, + "row": 9230 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_human_brain/00_get_inferred_adata.py", + "sha256": "82f5fdd54995f9af52d7ce3a8cc06966d6376b90ff9c54a7f5d80dc76c4f446c", + "language": "Python", + "lines": 299, + "truncated": false, + "block": 1, + "row": 8922 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_human_brain/01_clustering_pseudotime.py", + "sha256": "dfcbe9dbe8ab8b568ff5af48673994a0514d091172b1d496366875f24029a85e", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 1, + "row": 8307 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_human_brain/02_missingmodality_streamline.py", + "sha256": "9d27d729b771edc3bc57f2d0140fffd0d314896638b0560aa6d0bc5b43031748", + "language": "Python", + "lines": 200, + "truncated": false, + "block": 1, + "row": 8788 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_human_brain/03_heatmap.py", + "sha256": "bc63b21a340a33a3555525d3caa489aa1211e7cd01414abd0d9781ce7e388198", + "language": "Python", + "lines": 520, + "truncated": false, + "block": 1, + "row": 9439 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_human_brain/04_inter_patient_analysis.py", + "sha256": "b16fedba3cb8c794d54ad2e67415f48689359f510812f857169509b5f35afe0b", + "language": "Python", + "lines": 224, + "truncated": false, + "block": 1, + "row": 8582 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_mouse_hair_follicle/000_performace_evaluation.py", + "sha256": "e5808f258e8409869d46a6392e6652abef328fd513da7b1e11d157cfab4d00c7", + "language": "Python", + "lines": 356, + "truncated": false, + "block": 1, + "row": 9251 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_mouse_hair_follicle/00_get_inferred_data.py", + "sha256": "93bb96b470aee2f6ed34447257d84a25e8f0ca7a9311240fb5034fb72239aada", + "language": "Python", + "lines": 346, + "truncated": false, + "block": 1, + "row": 9223 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_mouse_hair_follicle/01_annotate_peudotime.py", + "sha256": "0251ef9edc829ae5bbc6f4327696a8c6e11fde3e918d35ca6cb685be54d1c3c7", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 1, + "row": 7190 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_mouse_hair_follicle/01_subclusterring_tacs.py", + "sha256": "586014c23564f7222c2487b46c91e571ca9d1b9acb67ea5275c0fcc8206e9b59", + "language": "Python", + "lines": 103, + "truncated": false, + "block": 1, + "row": 7465 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_mouse_hair_follicle/02_clustering_heatmap.py", + "sha256": "078caf02753590c8ecf161bed0b05a38f6bbcd508f481eb4970c108dd0a291ad", + "language": "Python", + "lines": 699, + "truncated": false, + "block": 1, + "row": 9601 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_mouse_hair_follicle/03_clustering_motif.py", + "sha256": "489a6cea38276a87363c17510ec9d98412d15a35e38753352d270958d6a043ab", + "language": "Python", + "lines": 622, + "truncated": false, + "block": 1, + "row": 9524 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_mouse_hair_follicle/03_clustering_motif_chromvar.py", + "sha256": "5dd745188f8831a705569dd2a181ec6046cae4cbc446d19480df94414a8f26a1", + "language": "Python", + "lines": 381, + "truncated": false, + "block": 1, + "row": 9059 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_mouse_hair_follicle/03_clustering_motif_vjp.py", + "sha256": "de6c49e9c31704143eabde238e6d3831645509ef551d56603ceb4b443bd8bde4", + "language": "Python", + "lines": 574, + "truncated": false, + "block": 1, + "row": 9507 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_mouse_hair_follicle/04_clustering_motif_svd.py", + "sha256": "3af417afa7ffb4001542b24c1758f4596b73b5a9b1e4d296d3cca229a78587b0", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 1, + "row": 6863 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_mouse_hair_follicle/05_GRN_inference.py", + "sha256": "33b0030cff7e34b84d1858dd6cd7aaa376df7589c2bdd3b166c78a82ef4619d4", + "language": "Python", + "lines": 508, + "truncated": false, + "block": 1, + "row": 9466 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_mouse_hair_follicle/05_GRN_inference_1st.py", + "sha256": "3abe1176f772895c92b6000b0d31da0f92fede152cd483f05786c4a66daecff4", + "language": "Python", + "lines": 399, + "truncated": false, + "block": 1, + "row": 9329 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_mouse_hair_follicle/05_GRN_inference_count.py", + "sha256": "ad910c2d6866861bcbbc471d2fb04ee8ca7b0ddff69b4d84cbc48ea544eef304", + "language": "Python", + "lines": 517, + "truncated": false, + "block": 1, + "row": 9476 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_mouse_hair_follicle/05_GRN_inference_pycistopic_res.py", + "sha256": "32e4737bb0127e4b28405b52d42ac16a9333c0465619a830307e6d7387de7736", + "language": "Python", + "lines": 601, + "truncated": false, + "block": 1, + "row": 9551 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_mouse_hair_follicle/05_GRN_inference_sep.py", + "sha256": "8994e3f33624be40846cc4a69ec5c8cbfb7b945b8da15be5742e040bd86c976e", + "language": "Python", + "lines": 592, + "truncated": false, + "block": 1, + "row": 9516 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_mouse_hair_follicle/05_post_GRN_Lef1.py", + "sha256": "aa00c2b197d8db32487a2529b457fff31366ed6c1991667a1676f25f7117d978", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 1, + "row": 7022 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_mouse_hair_follicle/05_post_GRN_crate_filtered_bed.py", + "sha256": "19de3fc3e9cd8ae22a9f63f9236f9a2215bbf85c11d3075b108991f24abe54dd", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 1, + "row": 7340 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_mouse_hair_follicle/05_post_GRN_filter_peaks_for_plot.py", + "sha256": "68f8c9351904455b715b1cfac6022ff0d889b679f4c45ce92546d15d50cf7071", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 1, + "row": 6794 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_mouse_hair_follicle/06_velocity_off_manifold.py", + "sha256": "97e773db4cf7d18ff033024e7ed298f60df1144bd0178d904ab37d358c7f8860", + "language": "Python", + "lines": 231, + "truncated": false, + "block": 1, + "row": 8463 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_mouse_hair_follicle/06_velocity_off_manifold_mod.py", + "sha256": "df9aea9579e9dafcdaa8e07aa0ae34fa02296e156e05ef8bcea8ad2e49af6c42", + "language": "Python", + "lines": 250, + "truncated": false, + "block": 1, + "row": 8607 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_mouse_hair_follicle/06_velocity_uncertainty.py", + "sha256": "4c7902f222e696aac30635fedc2d1f5772822af3d3e45ff55fab46834ee4bc55", + "language": "Python", + "lines": 236, + "truncated": false, + "block": 1, + "row": 8561 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_mouse_hair_follicle/07_uncertainty_vs_pseudotime.py", + "sha256": "4746bf1016a919627fe247ed697b23c7250deffde7358eae0a0a345075fea58d", + "language": "Python", + "lines": 249, + "truncated": false, + "block": 1, + "row": 8644 + }, + { + "path": "mmVelo_tutorial_v2/src/fig_mouse_hair_follicle/20_mmvelo_ablation_analysis.py", + "sha256": "5fc4320d77d88dcb0e8cdab4b5095be1b0df528ab1d751ecb4f5efc769370b12", + "language": "Python", + "lines": 681, + "truncated": false, + "block": 1, + "row": 9526 + }, + { + "path": "mmVelo_tutorial_v2/src/mmvelo_multi/funcs.py", + "sha256": "e72dfc40590b59ca2748d589922ce08f4d52dba12e7009bdfc3484dc31685b43", + "language": "Python", + "lines": 115, + "truncated": false, + "block": 1, + "row": 7191 + }, + { + "path": "mmVelo_tutorial_v2/src/mmvelo_multi/models.py", + "sha256": "35115c2d77e420045fa2d6ba2702a3e3b9c9541322442bb4fb875bc4ea11ba71", + "language": "Python", + "lines": 574, + "truncated": false, + "block": 1, + "row": 9470 + }, + { + "path": "mmVelo_tutorial_v2/src/mmvelo_multi/modules.py", + "sha256": "e4276b13821cfef7e9aaac60643af64c6f1b776610d4a11b936dc7a7063e0403", + "language": "Python", + "lines": 201, + "truncated": false, + "block": 1, + "row": 7807 + }, + { + "path": "mmVelo_tutorial_v2/src/mmvelo_multi/streamlineplot.py", + "sha256": "dc2cdfe61b92ec13ebc0d020fb2337aa9c83626b3cb62b287f2aebb686bf43db", + "language": "Python", + "lines": 1724, + "truncated": false, + "block": 1, + "row": 9809 + }, + { + "path": "mmVelo_tutorial_v2/src/mmvelo_multi/utils.py", + "sha256": "42085be96d685cff2a50997ae282ec7fca90fdd194cb3fd19ccb57a1f6a1a70b", + "language": "Python", + "lines": 939, + "truncated": false, + "block": 1, + "row": 9781 + }, + { + "path": "mmVelo_tutorial_v2/src/mmvelo_multi/velocity_off_manifold.py", + "sha256": "28acae7f2d28cb0447ef000e08f3a09a0df240d90ea4bcd20e5b5395b639f56c", + "language": "Python", + "lines": 339, + "truncated": false, + "block": 1, + "row": 8975 + }, + { + "path": "mmVelo_tutorial_v2/src/mmvelo_multi/velocity_off_manifold_mod.py", + "sha256": "0176906ec54540031b4c86e3003b014eac0371135c0a209c911f51f7d461f799", + "language": "Python", + "lines": 490, + "truncated": false, + "block": 1, + "row": 9395 + }, + { + "path": "mmVelo_tutorial_v2/src/mmvelo_multi/velocity_uncertainty.py", + "sha256": "568e0c05e137b91bf730161b67c54e072916a973fc7359c24ef513f11e12ba8d", + "language": "Python", + "lines": 476, + "truncated": false, + "block": 1, + "row": 9340 + }, + { + "path": "mmVelo_tutorial_v2/src/mmvelo_multi_cond/dataset_all_modality.py", + "sha256": "cc0d3b33588d78b922f7db4947dc36aaac75abd0f3d30aa78dcd9070017bdcab", + "language": "Python", + "lines": 364, + "truncated": false, + "block": 1, + "row": 9290 + }, + { + "path": "mmVelo_tutorial_v2/src/mmvelo_multi_cond/models_missingmodality_all_adv_modadv.py", + "sha256": "000b157339ad33f859b0b403ec2a9e38699e59c73f13dcffa6458bb2726ffa6d", + "language": "Python", + "lines": 611, + "truncated": false, + "block": 1, + "row": 9596 + }, + { + "path": "mmVelo_tutorial_v2/src/mmvelo_multi_cond/modules.py", + "sha256": "6657e9d2e09f73408afc757f77adaf7dd428c0554c9de9d6fa9a647d2b05e34c", + "language": "Python", + "lines": 248, + "truncated": false, + "block": 1, + "row": 8261 + }, + { + "path": "mmVelo_tutorial_v2/src/mmvelo_multi_cond/streamlineplot.py", + "sha256": "dc2cdfe61b92ec13ebc0d020fb2337aa9c83626b3cb62b287f2aebb686bf43db", + "language": "Python", + "lines": 1724, + "truncated": false, + "block": 1, + "row": 9809 + }, + { + "path": "mmVelo_tutorial_v2/src/mmvelo_multi_cond/utils.py", + "sha256": "63ec7daf96f76c043f98074336367d55b55922204c77787fcffa2d2d27b66600", + "language": "Python", + "lines": 792, + "truncated": false, + "block": 1, + "row": 9742 + }, + { + "path": "mmVelo_tutorial_v2/src/mmvelo_tutorial/dataset_mouse_brain.py", + "sha256": "ab7c12425c1747b1094f30557eb65ebe07e902ee0de199c353aa36a7e1713631", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 1, + "row": 7635 + }, + { + "path": "mmVelo_tutorial_v2/src/mmvelo_tutorial/train_human_brain.py", + "sha256": "83e96cacec8d9e5430e741ca074bc13d4c8beacb0ed5c3a61a4a03e60b2dd522", + "language": "Python", + "lines": 468, + "truncated": false, + "block": 1, + "row": 9285 + }, + { + "path": "mmVelo_tutorial_v2/src/mmvelo_tutorial/train_mouse_brain.py", + "sha256": "13c9ffbc0e3cfd2b266d61e5c0e224201a82cf9d66d540465e089ac531667f97", + "language": "Python", + "lines": 349, + "truncated": false, + "block": 1, + "row": 8986 + }, + { + "path": "mmVelo_tutorial_v2/src/mmvelo_tutorial/viz_human_brain.py", + "sha256": "51bcf4e39ac9ec55087f6f02b476713d7b42d850f1907fc2b659f98628f77923", + "language": "Python", + "lines": 267, + "truncated": false, + "block": 1, + "row": 8541 + }, + { + "path": "mmVelo_tutorial_v2/tutorial_1_mouse_brain.ipynb", + "sha256": "12e296bdf56b3bfc8ce0b7fb109059c08609f3bc6f94790e396f7929fa079951", + "language": "Jupyter", + "lines": 350, + "truncated": false, + "block": 1, + "row": 1948 + }, + { + "path": "mmVelo_tutorial_v2/tutorial_2_human_brain_missing_modality.ipynb", + "sha256": "ada2f2e253380ea09bad25b3bc1ec209524c0e575b1c32a99521863f9f84930c", + "language": "Jupyter", + "lines": 396, + "truncated": false, + "block": 1, + "row": 1941 + } + ] +} \ No newline at end of file diff --git a/manifests/11/zenodo__21964069.json b/manifests/11/zenodo__21964069.json new file mode 100644 index 0000000000000000000000000000000000000000..af39508ef364529a0a7866e9983cf5aba67f371a --- /dev/null +++ b/manifests/11/zenodo__21964069.json @@ -0,0 +1,570 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:21964069", + "url": "https://doi.org/10.5281/zenodo.21964069", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file LICENSE.txt", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.txt", + "sha256": "6e0eff88d9e13a32246429abbccec21748a360e329e87809f09f33628a842601", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2086 + }, + { + "path": "README.md", + "sha256": "849482de545771e3a41cd0a3dc52e1bbd447d1e1d6687a6e790c96dc47520eba", + "language": "Text", + "lines": 143, + "truncated": false, + "block": 1, + "row": 11956 + }, + { + "path": "code/EEGprocessing/BayesFactor ANOVA.R", + "sha256": "e7ff7327433b1d14f10ecee3c257c0704b6a307dbf7e96fd9cf1476175e34827", + "language": "R", + "lines": 147, + "truncated": false, + "block": 1, + "row": 10282 + }, + { + "path": "code/EEGprocessing/EEGpav_accuracy.sps", + "sha256": "1a155622789ed390edaca494d87181584c8d0b3c0df540ec72fdd08ee6abdb73", + "language": "SPSS", + "lines": 237, + "truncated": false, + "block": 1, + "row": 11104 + }, + { + "path": "code/EEGprocessing/EEGpav_mixedmodels.R", + "sha256": "a2d35bdcefff81c22ef0fb4c71b16b02decdf74186347d0c5ddb36e832285abe", + "language": "R", + "lines": 623, + "truncated": false, + "block": 1, + "row": 10560 + }, + { + "path": "code/EEGprocessing/TF (group-level).m", + "sha256": "d08d7601a473e796a9d368205747712762fb46010017ffff1a1495f947484ea7", + "language": "MATLAB", + "lines": 1533, + "truncated": false, + "block": 1, + "row": 4334 + }, + { + "path": "code/EEGprocessing/TF (subject-level).m", + "sha256": "4c830f96c20715a583ddd07e0ef5818b08fcf54bdbcb2fb5240134dc9ee267e9", + "language": "MATLAB", + "lines": 265, + "truncated": false, + "block": 1, + "row": 4022 + }, + { + "path": "code/EEGprocessing/eegfigureplot.m", + "sha256": "4aa765f7621b2307312ad482112f5541969e4f4a38e49359f5bd9403ade1b916", + "language": "MATLAB", + "lines": 868, + "truncated": false, + "block": 1, + "row": 4287 + }, + { + "path": "code/EEGprocessing/eegpreprocess.m", + "sha256": "7ac4c26d27b346a541c971d6cbadcea9e29fb286f87b179643a61b6b6e4966c9", + "language": "MATLAB", + "lines": 203, + "truncated": false, + "block": 1, + "row": 3719 + }, + { + "path": "code/EEGprocessing/feedback_spss.sps", + "sha256": "0407a752b6d0459ed827afb9d5ff12317a6a5972bfc68a1a0df5a7a17a3dbe47", + "language": "SPSS", + "lines": 63, + "truncated": false, + "block": 1, + "row": 11100 + }, + { + "path": "code/EEGprocessing/simpef.R", + "sha256": "7ec6f987b584c854c56fa0361edbb202e7f87cb4d827fe49b0c72f1e50bc8c95", + "language": "R", + "lines": 15, + "truncated": false, + "block": 1, + "row": 9953 + }, + { + "path": "code/ISPS/EEGpav_icpc_hc.sps", + "sha256": "72f39d22d5da8a5d3a46dd3281611a7343e834a39b4937efb00493b04fb28474", + "language": "SPSS", + "lines": 126, + "truncated": false, + "block": 1, + "row": 11103 + }, + { + "path": "code/ISPS/EEGpav_icpc_ocddelete6.sps", + "sha256": "f1851f8ef7831d9f0d660b8a0937007df2f967d45ca18b329c86d9b2622b8a4b", + "language": "SPSS", + "lines": 109, + "truncated": false, + "block": 1, + "row": 11102 + }, + { + "path": "code/ISPS/EEGpav_icpchc&ocd.sps", + "sha256": "928de37d3d583462bca46d174511efd525ef1f195fa57120253939305ab6e4a8", + "language": "SPSS", + "lines": 102, + "truncated": false, + "block": 1, + "row": 11101 + }, + { + "path": "code/ISPS/ISPS (group-level).m", + "sha256": "7b7cda71782fda00723b6eb984d4299209b586e7ee84db58ed2437bdb4149873", + "language": "MATLAB", + "lines": 1327, + "truncated": false, + "block": 1, + "row": 4330 + }, + { + "path": "code/ISPS/ISPS (subject-level).m", + "sha256": "88fb9c0f1e8b8ece31b670728908516a7138112ae28d5c3a76743fb9cf6a2e50", + "language": "MATLAB", + "lines": 137, + "truncated": false, + "block": 1, + "row": 3641 + }, + { + "path": "code/ISPS/ISPSplot.m", + "sha256": "261ea0d99af058b9e4523bb9eb5a495ec7d1fc5364ff88e68b284c6a578691c6", + "language": "MATLAB", + "lines": 613, + "truncated": false, + "block": 1, + "row": 4244 + }, + { + "path": "code/ISPS/TF_singletrial_grouplevel.m", + "sha256": "bda27673fcbfa07da98e10ce8b118aa2f728a8c2941229a315b51613f59e5713", + "language": "MATLAB", + "lines": 718, + "truncated": false, + "block": 1, + "row": 4290 + }, + { + "path": "code/Regulatory orientation/relation.m", + "sha256": "74edf224af9ad4702df9838730043126099388ae2b8f165aa263b1a094642954", + "language": "MATLAB", + "lines": 486, + "truncated": false, + "block": 1, + "row": 4204 + }, + { + "path": "code/Regulatory orientation/Φreg Calculation.R", + "sha256": "a0e09be29dc9c5a9f3f5b6eee013649c36423f0ec4726e5c2211b904e0b88b38", + "language": "R", + "lines": 185, + "truncated": false, + "block": 1, + "row": 10287 + }, + { + "path": "code/Regulatory orientation/Φreg plot.m", + "sha256": "4d1187e4836f9697c1ee12796d25336940552f3122b57cfd065b7b979221f00d", + "language": "MATLAB", + "lines": 470, + "truncated": false, + "block": 1, + "row": 4193 + }, + { + "path": "code/behavior/EEGpav_mixedmodels.R", + "sha256": "b849d0cfe545863242f5671e82dde44c9418a0ec13f1c09ad52dddccfffbd24a", + "language": "R", + "lines": 1078, + "truncated": false, + "block": 1, + "row": 10542 + }, + { + "path": "code/behavior/EEGpav_prepStan4Reeg.m", + "sha256": "9598ddcc6094020945ed75e186576d0d8400ea09a0dd70ee98d0833dc16aa11b", + "language": "MATLAB", + "lines": 102, + "truncated": false, + "block": 1, + "row": 3580 + }, + { + "path": "code/behavior/behaviorplot.m", + "sha256": "09b50b2c0f66288ddd3be1fc23ac980af7200ca459a445b1551f6cf036a765e8", + "language": "MATLAB", + "lines": 236, + "truncated": false, + "block": 1, + "row": 4057 + }, + { + "path": "code/behavior/boundedline.m", + "sha256": "8a63b0ca6defa0cd046c09b0c7bce03c2e93b91c25dda010581006a6fd29db8b", + "language": "MATLAB", + "lines": 501, + "truncated": false, + "block": 1, + "row": 4146 + }, + { + "path": "code/behavior/data.m", + "sha256": "4efee06fe759eb2a123ad124a4a316d7a17088a1c400ef1c18c2748390fb39d0", + "language": "MATLAB", + "lines": 360, + "truncated": false, + "block": 1, + "row": 4111 + }, + { + "path": "code/behavior/simpef.R", + "sha256": "7ec6f987b584c854c56fa0361edbb202e7f87cb4d827fe49b0c72f1e50bc8c95", + "language": "R", + "lines": 15, + "truncated": false, + "block": 1, + "row": 9953 + }, + { + "path": "code/computational_modelling/RunR.R", + "sha256": "9d9f94e9c8b5c957df30c4c2206a2014096b7dc648ec569994509978136ff053", + "language": "R", + "lines": 144, + "truncated": false, + "block": 1, + "row": 10299 + }, + { + "path": "code/computational_modelling/eegRdatarun.R", + "sha256": "7f4fa1b7f6784a30f8d54465078f2d302f1a45e5fc57e90944debcdb737d5934", + "language": "R", + "lines": 115, + "truncated": false, + "block": 1, + "row": 10229 + }, + { + "path": "code/computational_modelling/helpfunctions/boundedline.m", + "sha256": "aed793db0a44d11fe5abec69f348c3eecc1b548492382d536b6627a997b8fd5e", + "language": "MATLAB", + "lines": 385, + "truncated": false, + "block": 1, + "row": 4051 + }, + { + "path": "code/computational_modelling/helpfunctions/mycsvwrite.m", + "sha256": "0a57f87081611675d63123050f90683f72cfff7dda891979496d51a3a81ffb86", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 1, + "row": 2481 + }, + { + "path": "code/computational_modelling/helpfunctions/plot_model.m", + "sha256": "bc45b8dc7638b87654aadd2ce5a354699589840817cbb771c5e0d1ef7146f6fe", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 1, + "row": 2717 + }, + { + "path": "code/computational_modelling/modelrun/extractEstimates.R", + "sha256": "b5725a8a4d8ab5548b8d0cbb59b10c6424991dcdf44962718679cdc55f2dfe85", + "language": "R", + "lines": 34, + "truncated": false, + "block": 1, + "row": 10009 + }, + { + "path": "code/computational_modelling/modelrun/fitmodel.R", + "sha256": "d3417e16a3eced407fd0c18de95d501dd3216244f4a32185cf3a3c10fa6923b7", + "language": "R", + "lines": 117, + "truncated": false, + "block": 1, + "row": 10264 + }, + { + "path": "code/computational_modelling/modelrun/getWAIC.R", + "sha256": "d1cfd7338954908ef7c8ff9eec5f3b77d2e5140ecaa2977637292019f30f6733", + "language": "R", + "lines": 23, + "truncated": false, + "block": 1, + "row": 9932 + }, + { + "path": "code/computational_modelling/modelrun/models4stan.R", + "sha256": "cbe8fc6da4f405740383e49ea714fe15adf0ff3bc69356334798de7915b21036", + "language": "R", + "lines": 4028, + "truncated": false, + "block": 1, + "row": 10618 + }, + { + "path": "code/computational_modelling/modelrun/plotFits.R", + "sha256": "759f2e113434613fc6c5ab9e51e97d6bcad508ebf0c8baf03845e37da7bd2816", + "language": "R", + "lines": 36, + "truncated": false, + "block": 1, + "row": 10022 + }, + { + "path": "code/computational_modelling/modelrun/waic.R", + "sha256": "f045ede50275ffd8a5505757afc2bec818f9f67c76ec779b8e77eb6b43c1fcaf", + "language": "R", + "lines": 49, + "truncated": false, + "block": 1, + "row": 10081 + }, + { + "path": "code/computational_modelling/plot/M12M16M19M21beta_output.R", + "sha256": "7bc797a53c22c5dca7a5a1a5ec66589f8703ccc15ab3d8e30b2cab2442aa4b2e", + "language": "R", + "lines": 134, + "truncated": false, + "block": 1, + "row": 10217 + }, + { + "path": "code/computational_modelling/plot/M3c_theta&conflictoutput.R", + "sha256": "90520d6c34acfae9b5c8942e8b7aac6a85a00c1fd03b50dbec155be81830d169", + "language": "R", + "lines": 346, + "truncated": false, + "block": 1, + "row": 10504 + }, + { + "path": "code/computational_modelling/plot/M5_hcvsocd/DrawCombined_AllInOne2.m", + "sha256": "5f861588ca8c20e945041068ea2cf4f55f4a17113b8af4c60960f7617cb63c45", + "language": "MATLAB", + "lines": 554, + "truncated": false, + "block": 1, + "row": 4268 + }, + { + "path": "code/computational_modelling/plot/M5_hcvsocd/M5dataoutput.R", + "sha256": "738395ff2efb51cdfbb6db49510671cdb47deef932d8f0ce71d824d50e60f2b9", + "language": "R", + "lines": 306, + "truncated": false, + "block": 1, + "row": 10412 + }, + { + "path": "code/computational_modelling/plot/WAICplot/DrawHC_WAIC_Set1.m", + "sha256": "1dd2ca9eb8f52d56766c51377569b9872951991bfe65b96dfdbaaebc26835551", + "language": "MATLAB", + "lines": 181, + "truncated": false, + "block": 1, + "row": 3834 + }, + { + "path": "code/computational_modelling/plot/WAICplot/DrawHC_WAIC_Set2.m", + "sha256": "0d4d8bc0a7762c393f82244395a0f7c0867a1881d7d8bc6d60846f8159865c6f", + "language": "MATLAB", + "lines": 186, + "truncated": false, + "block": 1, + "row": 3838 + }, + { + "path": "code/computational_modelling/plot/WAICplot/DrawHC_WAIC_Set3.m", + "sha256": "ea0a3574084c10bdfb4a1bebc6a1e43b29cee51252425e3be85837345a7a7e21", + "language": "MATLAB", + "lines": 178, + "truncated": false, + "block": 1, + "row": 3811 + }, + { + "path": "code/computational_modelling/plot/WAICplot/DrawOCD_WAIC_Set1.m", + "sha256": "110c09d15eab46eda8d299c66c4044c379f17c95b4c01862ebda2b518f7be88a", + "language": "MATLAB", + "lines": 197, + "truncated": false, + "block": 1, + "row": 3895 + }, + { + "path": "code/computational_modelling/plot/WAICplot/DrawOCD_WAIC_Set2right.m", + "sha256": "49ff4bffd416af7513ae2d195a6b5bac1a293cd9e29b3a2c8f43d2b11db5742f", + "language": "MATLAB", + "lines": 211, + "truncated": false, + "block": 1, + "row": 3886 + }, + { + "path": "code/computational_modelling/plot/WAICplot/DrawOCD_WAIC_Set3right.m", + "sha256": "6b1478135cfd58364d4b9c3e7966fce8d8cdeec3048b5df674be0b5279499382", + "language": "MATLAB", + "lines": 209, + "truncated": false, + "block": 1, + "row": 3887 + }, + { + "path": "code/computational_modelling/plot/WAICplot/WAIC_output.R", + "sha256": "b5a68350dd3ed3a6b4966bc0661727dfe9524d4da02d6d9e17e3f3e58be4e2ad", + "language": "R", + "lines": 128, + "truncated": false, + "block": 1, + "row": 10201 + }, + { + "path": "code/computational_modelling/plot/checkRhat.R", + "sha256": "00a59cc24ed484b96a35e093f281e536f39fb0d0d56e0e9060d768001cf8b947", + "language": "R", + "lines": 52, + "truncated": false, + "block": 1, + "row": 10056 + }, + { + "path": "code/computational_modelling/plot/extractEstimates.R", + "sha256": "2da9879bc32ad25d24fa713f3dcf1af6862d68f5f316bd5c63c4f0ee2af6080e", + "language": "R", + "lines": 94, + "truncated": false, + "block": 1, + "row": 10202 + }, + { + "path": "code/computational_modelling/plot/extractPosteriors.R", + "sha256": "7bb567c910005612bb91559a7e1dac69dc990efeb0965cdb35e3204a9ba157b9", + "language": "R", + "lines": 99, + "truncated": false, + "block": 1, + "row": 10203 + }, + { + "path": "code/computational_modelling/plot/rebuttal_computeR2.R", + "sha256": "ebe1321300fbde48db22b556a532538268c33b00ffdfde4a800c52f72d81f706", + "language": "R", + "lines": 116, + "truncated": false, + "block": 1, + "row": 10205 + }, + { + "path": "code/computational_modelling/plot/theta&conflictplot.m", + "sha256": "2f1e7a0cc94b228a4a3d2c587e997afcfb877f138c9e747efa2786d75a045f79", + "language": "MATLAB", + "lines": 368, + "truncated": false, + "block": 1, + "row": 4086 + }, + { + "path": "code/computational_modelling/plot/βplot/HCdraw_m12_plot26.m", + "sha256": "235a0a698a24c4f6bf07d3fe57bda14baef9c1d6f268035e3714b535bf9ac69c", + "language": "MATLAB", + "lines": 276, + "truncated": false, + "block": 1, + "row": 3952 + }, + { + "path": "code/computational_modelling/plot/βplot/HCdraw_m16_plot26.m", + "sha256": "98eb935b95770eb46dd1150280cf23231e37ca14900e0d004410e2c1cd263ff3", + "language": "MATLAB", + "lines": 262, + "truncated": false, + "block": 1, + "row": 3958 + }, + { + "path": "code/computational_modelling/plot/βplot/HCdraw_m19_plot26.m", + "sha256": "3cc9b3465279e85328671f9b0ce3191ec317c674426d40f53e9530332190e528", + "language": "MATLAB", + "lines": 261, + "truncated": false, + "block": 1, + "row": 3956 + }, + { + "path": "code/computational_modelling/plot/βplot/OCDdraw_m12_plot26.m", + "sha256": "d5da8bc3b892b868b5f7f0e7836a14c52802987267a274f50bae2b5be446b4af", + "language": "MATLAB", + "lines": 213, + "truncated": false, + "block": 1, + "row": 3870 + }, + { + "path": "code/computational_modelling/plot/βplot/OCDdraw_m16_plot26.m", + "sha256": "4c4c5d724535ec4e0beece6ef4c468e186450880242e51c2dad93590e8955a4c", + "language": "MATLAB", + "lines": 264, + "truncated": false, + "block": 1, + "row": 3929 + }, + { + "path": "code/computational_modelling/plot/βplot/OCDdraw_m21_plot26.m", + "sha256": "42f7bc034ffbb7826a3b7ff67691eed2dda047bbbba579b5704b68cbf56b0840", + "language": "MATLAB", + "lines": 284, + "truncated": false, + "block": 1, + "row": 4004 + }, + { + "path": "code/computational_modelling/plot/βplot/βdataoutput_plot.R", + "sha256": "3dcbb5fc91bb5c2378d69d6e8275bd4bce328170a3e04b0fdd419fc886aafba3", + "language": "R", + "lines": 63, + "truncated": false, + "block": 1, + "row": 10082 + }, + { + "path": "code/computational_modelling/prepEEG4stan.R", + "sha256": "e8beb6588b8615fc8108fe0161615bf41bf395af40fc2d9b0998b5eaef4f085e", + "language": "R", + "lines": 148, + "truncated": false, + "block": 1, + "row": 10290 + } + ] +} \ No newline at end of file diff --git a/manifests/12/github.com__danko-lab__proseq2.0.json b/manifests/12/github.com__danko-lab__proseq2.0.json new file mode 100644 index 0000000000000000000000000000000000000000..e97869fdd4d0dc4711b0e9497c5ee5be0d487b7a --- /dev/null +++ b/manifests/12/github.com__danko-lab__proseq2.0.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/danko-lab/proseq2.0", + "url": "https://github.com/Danko-Lab/proseq2.0", + "host": "github.com", + "commit": "41ed01e5320cdd5d65c596c2925bada3a538f28f", + "license": "BSD-2-Clause", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "e00dd6692668810d4c09199b5166912b80087c455339af7221ecf6668ce214ba", + "language": "License", + "lines": 25, + "truncated": false, + "block": 1, + "row": 2189 + }, + { + "path": "README.md", + "sha256": "d0cc90d952cb0bcc543e8016574bff243d44d6e4363a19aeb95dd5e4f46e5ae5", + "language": "Text", + "lines": 223, + "truncated": false, + "block": 1, + "row": 11975 + } + ] +} \ No newline at end of file diff --git a/manifests/12/github.com__narayanps__jedimeg.json b/manifests/12/github.com__narayanps__jedimeg.json new file mode 100644 index 0000000000000000000000000000000000000000..3087926850a84de332d084aedcec038b24c0db4e --- /dev/null +++ b/manifests/12/github.com__narayanps__jedimeg.json @@ -0,0 +1,948 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/narayanps/jedimeg", + "url": "https://github.com/narayanps/jediMEG", + "host": "github.com", + "commit": "3e0189cc3eb18a4613c875bfdcf872fe644f12dd", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "EcoG_simu/change_erp.m", + "sha256": "ff2fe967e15395d602c8db958f6f2499738c11c70edc7a57d93a886ce5ccedf4", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 1, + "row": 2809 + }, + { + "path": "EcoG_simu/extract_ecog_data.m", + "sha256": "af361a1d7d44f20f077d7daef37ac04f448c0e35d1d033d8f79830bb01eae598", + "language": "MATLAB", + "lines": 103, + "truncated": false, + "block": 1, + "row": 3321 + }, + { + "path": "EcoG_simu/simu_meg_from_ecog.m", + "sha256": "4b6b80b0655164ab339530fb0c2749008db29a6362ca856968d797f1c4bbed65", + "language": "MATLAB", + "lines": 83, + "truncated": false, + "block": 1, + "row": 3083 + }, + { + "path": "LICENSE", + "sha256": "118b331289eaf0382a67ab2be9e1162f0f36c80819f749ec1f1117c9953da382", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2083 + }, + { + "path": "MVAR_simu/add_brain_noise.m", + "sha256": "f987e9f5a81a8238fc7ae0774e342b7a27c08523567466e1eaf0fc7f8985ea38", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 1, + "row": 2480 + }, + { + "path": "MVAR_simu/add_meas_noise.m", + "sha256": "bc9e041c7a28bd0917e7f3338b07df34704abe6f8a200d19bbd96869fc30fa94", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 1, + "row": 2548 + }, + { + "path": "MVAR_simu/five_source_model.m", + "sha256": "9ce63c338153f13980f31c78508e9c3c8abe65bfe916975165afba2861cdb2a0", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 1, + "row": 2527 + }, + { + "path": "MVAR_simu/gen_MEG_simu.m", + "sha256": "903a7c5c167fe529e160381f137e5484cfd0d1fd08d1578873bc27e9c84b7be8", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 1, + "row": 2449 + }, + { + "path": "MVAR_simu/gen_mvar_data.m", + "sha256": "63b2b77384058844bacab159815002776a001858f3c5542f9c4cd5c1ca4d661f", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 1, + "row": 2370 + }, + { + "path": "MVAR_simu/mkpinknoise.m", + "sha256": "5bed0b6581e84ac56c0ec45fef257e61b8c99b6fbf30d73b4dd1dddff5b4a664", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 1, + "row": 2863 + }, + { + "path": "MVAR_simu/select_source_inds.m", + "sha256": "f8f9b30318e06c30d06a8453238f30166d22e48f99ad46180a2c86e92aa43353", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 1, + "row": 2573 + }, + { + "path": "MVAR_simu/three_source_model.m", + "sha256": "713f74b0033bd8a33128ea1f778a421840022e79947b2a4aa07f05738e541929", + "language": "MATLAB", + "lines": 66, + "truncated": false, + "block": 1, + "row": 2783 + }, + { + "path": "MVAR_simu/two_source_model.m", + "sha256": "bceb11f37d844ed9b9047f9a9f735ae20771b3bb7aab98b6c0ef0e9f51c69b0e", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 1, + "row": 2614 + }, + { + "path": "README.md", + "sha256": "3f56a5ad359fc94c2e9224cd1f990d651da945e2da06cb1ee6a9391c9a7fdaf7", + "language": "Text", + "lines": 1, + "truncated": false, + "block": 1, + "row": 11760 + }, + { + "path": "demo_lcmv.m", + "sha256": "dd90962cd06f949d237f2129bce11034c02ff8cd225cb9dcc4308b578efe511a", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 1, + "row": 2938 + }, + { + "path": "demo_mcmv.m", + "sha256": "ca7720e17dbe47c5ab4eada16999c49baf5903054ec5e58eb502b7cb8db31eff", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 1, + "row": 2832 + }, + { + "path": "demo_saem.m", + "sha256": "88192aa0034841bf5e3a6b6887f6eb6dfd7df641ac3450266a95215c087b87bb", + "language": "MATLAB", + "lines": 110, + "truncated": false, + "block": 1, + "row": 3242 + }, + { + "path": "demo_saem_meg.m", + "sha256": "08852552a633168dfc403eb2e28b5abe8232bbe8c3863a486e5a9c4b35476223", + "language": "MATLAB", + "lines": 78, + "truncated": false, + "block": 1, + "row": 3076 + }, + { + "path": "external/mvar_functions/InstModelfilter.m", + "sha256": "e1c869da07071bbaa1ed662b4fa272ccd86870f64e62773f9c8993e8c251c067", + "language": "MATLAB", + "lines": 66, + "truncated": false, + "block": 1, + "row": 3201 + }, + { + "path": "external/mvar_functions/MVARfilter.m", + "sha256": "190ba58c3e62aca7d013d673b96f79bcdc86d159c99c0d0886a5be9df46dee57", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 1, + "row": 2563 + }, + { + "path": "external/mvar_functions/choldiag.m", + "sha256": "b39ae471d007ee54159392f8721c29ff8c9ebd53cdf329ae673fdd4712c24c81", + "language": "MATLAB", + "lines": 44, + "truncated": false, + "block": 1, + "row": 2701 + }, + { + "path": "external/mvar_functions/diag_coeff_rev.m", + "sha256": "1623e7981f91ced3652afd1ecc01014cf201d5ec21dca2c1b1a631f3c7fa9589", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 1, + "row": 2643 + }, + { + "path": "external/mvar_functions/external/arfit/acf.m", + "sha256": "d11f806627f4909e362e20a7c5de3b921a63cbc3acffbafabf420a3370f61fea", + "language": "MATLAB", + "lines": 86, + "truncated": false, + "block": 1, + "row": 3283 + }, + { + "path": "external/mvar_functions/external/arfit/adjph.m", + "sha256": "43e165002a015738d4d07a71a4566b6448cc006838da7262f71f77b881a9a8a4", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 1, + "row": 2814 + }, + { + "path": "external/mvar_functions/external/arfit/arconf.m", + "sha256": "43eb701b4b8eb6eccc32035b7f461611bc93f3d446723be9240c87e33a824baf", + "language": "MATLAB", + "lines": 66, + "truncated": false, + "block": 1, + "row": 3182 + }, + { + "path": "external/mvar_functions/external/arfit/ardem.m", + "sha256": "d82570dc5a840b4c9af4302787c13dc18670c969bdee3ed5f18ef8845d10dfea", + "language": "MATLAB", + "lines": 322, + "truncated": false, + "block": 1, + "row": 4027 + }, + { + "path": "external/mvar_functions/external/arfit/arfit.m", + "sha256": "aa84ed980c159e3b2ae3fcc11eefc0c452d9b894b370d3acf07501f5f5b9c878", + "language": "MATLAB", + "lines": 165, + "truncated": false, + "block": 1, + "row": 3790 + }, + { + "path": "external/mvar_functions/external/arfit/armode.m", + "sha256": "bfa360cd14fcdae3f8cf37776e17967f766339fb3d2c837885e302d892ae7109", + "language": "MATLAB", + "lines": 191, + "truncated": false, + "block": 1, + "row": 3867 + }, + { + "path": "external/mvar_functions/external/arfit/arord.m", + "sha256": "84f6ae029f54ec127c5246c289049ceed6e6c3a713c0350bf43eda4d104d94ee", + "language": "MATLAB", + "lines": 85, + "truncated": false, + "block": 1, + "row": 3368 + }, + { + "path": "external/mvar_functions/external/arfit/arqr.m", + "sha256": "a113a62d02825076492ac0daeaa995a62c4f0d1d3ea2b0dc4eae0eee38fa9956", + "language": "MATLAB", + "lines": 80, + "truncated": false, + "block": 1, + "row": 3404 + }, + { + "path": "external/mvar_functions/external/arfit/arres.m", + "sha256": "d7c59a1cfcf3940a685766b510d680c629a458ef711d3474e5294dd3f13de09e", + "language": "MATLAB", + "lines": 109, + "truncated": false, + "block": 1, + "row": 3546 + }, + { + "path": "external/mvar_functions/external/arfit/arsim.m", + "sha256": "9cf2fa3b2a386a317b270e635fda570c0cebb78c4e78297dba067c1259cd86a3", + "language": "MATLAB", + "lines": 129, + "truncated": false, + "block": 1, + "row": 3505 + }, + { + "path": "external/mvar_functions/external/arfit/tquant.m", + "sha256": "9573887241a13b7754a28327bbb74b526db7aee40db2c5809971f2c380ac8265", + "language": "MATLAB", + "lines": 53, + "truncated": false, + "block": 1, + "row": 2969 + }, + { + "path": "external/mvar_functions/external/covm.m", + "sha256": "9551d5f5eae3d8237b375479a48390d5e86995400fccb3a578d176b3c77f7e68", + "language": "MATLAB", + "lines": 153, + "truncated": false, + "block": 1, + "row": 3673 + }, + { + "path": "external/mvar_functions/external/fastica.m", + "sha256": "ff504eeb8733b42e2895842fe7fbc64a995f234cc6ab72d11797af445545cc88", + "language": "MATLAB", + "lines": 523, + "truncated": false, + "block": 1, + "row": 4232 + }, + { + "path": "external/mvar_functions/external/fpica.m", + "sha256": "a194973ee042a8aabd128ba660b2e8f960b9a20933de2246562737f33327da28", + "language": "MATLAB", + "lines": 907, + "truncated": false, + "block": 1, + "row": 4285 + }, + { + "path": "external/mvar_functions/external/hungarian.m", + "sha256": "a03d972d5a0aa18b4a2cf911235985a28cfc14ef336c765b36e8149a760bb635", + "language": "MATLAB", + "lines": 470, + "truncated": false, + "block": 1, + "row": 4130 + }, + { + "path": "external/mvar_functions/external/iperm.m", + "sha256": "140db85fab22b73004c411e683c934633e0fe6cf23cfffac2a863b7543cf2209", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 1, + "row": 2349 + }, + { + "path": "external/mvar_functions/external/mvar.m", + "sha256": "e524193eab675d38c2921218a8eb3c383bf92fa92bcbf38f4042cf106ad09738", + "language": "MATLAB", + "lines": 847, + "truncated": false, + "block": 1, + "row": 4301 + }, + { + "path": "external/mvar_functions/external/pcamat.m", + "sha256": "09a05d880e85ad5918211a0407c6b0e3663b72d8a645ef939d00415a41096d2a", + "language": "MATLAB", + "lines": 362, + "truncated": false, + "block": 1, + "row": 4114 + }, + { + "path": "external/mvar_functions/external/permnozeribrutal.m", + "sha256": "e7748f10ec8be3d3fae6af1db8c1850971cbd66fd651f60805cace6235ac12c8", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 1, + "row": 2700 + }, + { + "path": "external/mvar_functions/external/permnozerihungarian.m", + "sha256": "e194eb220b7518cddc43e9618ffededc5a98eae9ca8ad185274e3a1294261ed5", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 1, + "row": 2610 + }, + { + "path": "external/mvar_functions/external/permslowertriagbrutal.m", + "sha256": "d8fe0034c90674239177cc93415a000439f797b6f6fb64963acd780287fece0a", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 1, + "row": 2841 + }, + { + "path": "external/mvar_functions/external/remmean.m", + "sha256": "553304d2bc0d2a45faabdb9a5798d43e7f02a241290097dbda624d259f618403", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 1, + "row": 2572 + }, + { + "path": "external/mvar_functions/external/sltprune.m", + "sha256": "27951090c5498e58ed8ffa848251b22f5006829b01fdfc810ea35d416124da43", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 1, + "row": 2915 + }, + { + "path": "external/mvar_functions/external/slttestperm.m", + "sha256": "4c511ecfb660d39f2568745d51921148d2ad7bf29cd0a368d8b61e577a91c891", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 1, + "row": 2853 + }, + { + "path": "external/mvar_functions/external/whitenv.m", + "sha256": "d9cb8ec030131d271dbdd70158a92fe1787cd1842aca3acb1b097293eec77fd9", + "language": "MATLAB", + "lines": 86, + "truncated": false, + "block": 1, + "row": 3349 + }, + { + "path": "external/mvar_functions/fdMVAR.m", + "sha256": "ef9b1b51b5b2078c0191291deead3e295f8953cc4ab13abd9c4022404d5204a2", + "language": "MATLAB", + "lines": 130, + "truncated": false, + "block": 1, + "row": 3771 + }, + { + "path": "external/mvar_functions/fdMVAR0.m", + "sha256": "865d9d0b51a29c41d4081f236bad0da4dc28872da5dc640ecef5d634d1a6f190", + "language": "MATLAB", + "lines": 120, + "truncated": false, + "block": 1, + "row": 3729 + }, + { + "path": "external/mvar_functions/idMVAR.m", + "sha256": "6b9d7ec11a238a264250dfef53c6c54f0a248f53728b288ac0f5c70c48ecae83", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 1, + "row": 2919 + }, + { + "path": "external/mvar_functions/idMVAR0ng.m", + "sha256": "65256d02ba65dcfbba5bd613bd7adcd183ffdabf133156b8609fa7a7d900341c", + "language": "MATLAB", + "lines": 69, + "truncated": false, + "block": 1, + "row": 3257 + }, + { + "path": "external/mvar_functions/idMVAR0prior.m", + "sha256": "3701ed941763e1d67148c528b7c43491161ffbc52636f0279e4a6f0ab941cb7c", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 1, + "row": 3126 + }, + { + "path": "external/mvar_functions/mos_idMVAR.m", + "sha256": "c87191b73d6ff57e53ee6e281ce49d7d391a6ba424fc4b6f08d7a79c182f3915", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 1, + "row": 2835 + }, + { + "path": "external/mvar_functions/simuMVARcoeff.m", + "sha256": "e89137d34dd2c0945f1e798df85a8f31b240d795707bd82a82a1eaed08c479bb", + "language": "MATLAB", + "lines": 187, + "truncated": false, + "block": 1, + "row": 3755 + }, + { + "path": "external/mvar_functions/surrVCFTd.m", + "sha256": "d018014eba66d58e6d115d4a52d058dc38bbefa0b84cc849f205b1bdb1437e53", + "language": "MATLAB", + "lines": 56, + "truncated": false, + "block": 1, + "row": 3036 + }, + { + "path": "external/mvar_functions/surrVCFTd0.m", + "sha256": "aef4ce5024a8699da6ad5cb741c1d3d5e972e9b92d4c3f0abc45b22fd4619df5", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 1, + "row": 3092 + }, + { + "path": "external/mvar_functions/surrVCFTf.m", + "sha256": "29a8871e3855e7fc92b7fd1804dd92890667e5bc3e0bd67a337d0f0de1d4621d", + "language": "MATLAB", + "lines": 65, + "truncated": false, + "block": 1, + "row": 3133 + }, + { + "path": "external/mvar_functions/surrVCFTf0.m", + "sha256": "021e330134138e30473cf14a98436051503bb16b4deb565275cb7d063171029a", + "language": "MATLAB", + "lines": 70, + "truncated": false, + "block": 1, + "row": 3202 + }, + { + "path": "external/mvar_functions/surrVFT.m", + "sha256": "a34513d4e334cdd2e085c69f7a06743151256e942a4e5a5d57d03a8064b72a09", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 1, + "row": 2923 + }, + { + "path": "external/mvar_functions/test_gaussianity.m", + "sha256": "da4e84368e6d376aa8733df94a3e5e8445c967e6e8cd56c389ba763639f66915", + "language": "MATLAB", + "lines": 76, + "truncated": false, + "block": 1, + "row": 3118 + }, + { + "path": "external/mvar_functions/test_independence.m", + "sha256": "bcf7a93734a3c05fbfc41d8fbaf4ebde8620bfab3f39653b72f2fd32c752eaf8", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 1, + "row": 2618 + }, + { + "path": "external/mvar_functions/test_whiteness.m", + "sha256": "9d57e7e192efecfea24b7e7c23d2539f7c4c705fb7d27461aeab404029d7bfa6", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 1, + "row": 2941 + }, + { + "path": "joint_est/LW_model.m", + "sha256": "9f863a1f9b409d7780a933132667833eb5b69bf8c1045e2b51a8a0bc4eba859b", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 1, + "row": 2626 + }, + { + "path": "joint_est/_gpu/compute_Bt_gpu.m", + "sha256": "3f2b9ae552269e06a286e5b4b15b43fa2bab9d08afd83debab7d936bf97c4aa0", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 1, + "row": 2569 + }, + { + "path": "joint_est/_gpu/compute_aN_gpu.m", + "sha256": "0d7b3a722edc54cfa027240945283a5d2bc1be700fc2f8128f0642ebde3dc62a", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 1, + "row": 2864 + }, + { + "path": "joint_est/_gpu/gpu_init_M.m", + "sha256": "1189faf831f7f6747e6de67d02327e99d798125d5fcda35b4e5b0cdb3117d224", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 1, + "row": 2441 + }, + { + "path": "joint_est/_gpu/gpu_kalman_predict.m", + "sha256": "e63111a250ef9c17a59eef81b77abc9f8057c2816e3320f38e9ad6965d165048", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 1, + "row": 2406 + }, + { + "path": "joint_est/_gpu/gpu_kalman_smoother.m", + "sha256": "dab1fbeb3230fc607199030e39393e1fbbf3071aea5951f826088bcaa38d1923", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 1, + "row": 2675 + }, + { + "path": "joint_est/_gpu/gpu_kalman_update.m", + "sha256": "05c9aa5adfda8529f82cea57de0f73d2ad836506ec61ed4b76678f520dbc08fd", + "language": "MATLAB", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2678 + }, + { + "path": "joint_est/_gpu/gpu_logpdf.m", + "sha256": "f9af83e82336241bf64a8a65b641505531cdd97c66f025e21a7dbf8ffa249abf", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 1, + "row": 2555 + }, + { + "path": "joint_est/_gpu/gpu_one_lag.m", + "sha256": "b8d6f55c0fa1c9f191e3c1ffe51f0c9fc9505f80eff7595dd53ba7386168be12", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 1, + "row": 2459 + }, + { + "path": "joint_est/_gpu/suff_stats_gpu.m", + "sha256": "8cd21725c0c8da727097b5a07f08b022383ac04dd93926966027e679c9c4ec55", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 1, + "row": 2757 + }, + { + "path": "joint_est/calc_obj.m", + "sha256": "90380f5afc53696be01d111ed21121c1003a3bdce95a00f41ae027d7bae2192e", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 1, + "row": 2295 + }, + { + "path": "joint_est/compute_Bt.m", + "sha256": "bdea291891735cc3f5de35244ede6f9024385c0c52873d6a758a5752277e9cf0", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 1, + "row": 2416 + }, + { + "path": "joint_est/compute_aN_fast.m", + "sha256": "cfa4159c787ef6cc7c4e0db1e227fdd6f5a5107747cd258e85731d178cc066c3", + "language": "MATLAB", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2728 + }, + { + "path": "joint_est/compute_complete_ll.m", + "sha256": "e6e8b10e89e3301c8e695552387dcd0fca8c7ea7f9174094c2bcc9acc69a5f3b", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 1, + "row": 2417 + }, + { + "path": "joint_est/compute_omega_lambda_fast.m", + "sha256": "8e039a5922979c130a4ed878f4415bb65499a0dc342b6bfbaa595a27671b3164", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 1, + "row": 2769 + }, + { + "path": "joint_est/grad_descent_sigmab.m", + "sha256": "cecaca49d32c9d823a91aee238b6a14c1b82af8d0c55e9b78c0d5471ac52a86c", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 1, + "row": 2703 + }, + { + "path": "joint_est/grad_descent_sigmam.m", + "sha256": "f8ca0950d0eaf165b1a7337160fdcbde6606ec2d0fe32dab184f4872f7b49f6d", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 1, + "row": 2707 + }, + { + "path": "joint_est/kalman_predict.m", + "sha256": "73587bf7fb4587ef619cdf6f99ec09647401ca0d2a7d154330655c8a7c87d4d6", + "language": "MATLAB", + "lines": 4, + "truncated": false, + "block": 1, + "row": 2259 + }, + { + "path": "joint_est/kalman_update.m", + "sha256": "77b3ff3ebb1acc8706091a113de0665bbab4488ecb04a64c28755998b0a730ad", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 1, + "row": 2297 + }, + { + "path": "joint_est/logpdf.m", + "sha256": "b5658a8b7e2b84f625f7971a189a24a7a00eeebd0ef2d8aa776f568f168a0216", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 1, + "row": 2434 + }, + { + "path": "joint_est/resampling.m", + "sha256": "7fd452e8395c5a26802992420078e8f779a6b3568c16491dcdf15c22f6aea50f", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 1, + "row": 3067 + }, + { + "path": "joint_est/saem.m", + "sha256": "f58aa2c9c59fb5c4b420a3dcca26133a6b3347cfc4356cd27fff93637a595ddb", + "language": "MATLAB", + "lines": 501, + "truncated": false, + "block": 1, + "row": 4206 + }, + { + "path": "joint_est/set_all_part_traj.m", + "sha256": "36b72b6891060f9938bbceef972ce56dc0a92aa2bff74741d6908a58eaebeb11", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 1, + "row": 2718 + }, + { + "path": "joint_est/set_all_part_traj_v2.m", + "sha256": "f582d2f0d82a1ffdfc5248d6e5a0d505c23a5e3421c523fec6d852ba113cb5c3", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 1, + "row": 2511 + }, + { + "path": "joint_est/set_part_traj.m", + "sha256": "44008c1d72476b869d1615b551ef079ec4acb96c6555c1c050836d69cf4d2ec6", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 1, + "row": 2609 + }, + { + "path": "joint_est/set_part_traj_mcmv_prior.m", + "sha256": "b626a22c7eeb918a1ef828d8a628afa6caaf3fd873f2bf6467240b7f244aaa69", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 1, + "row": 2415 + }, + { + "path": "joint_est/suff_stats_fast.m", + "sha256": "419235d988908835573e538e60ab3df0436f5280c8d6bd2924e0abd79884cbaa", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 1, + "row": 2388 + }, + { + "path": "misc/check_loc_error.m", + "sha256": "497fddada2f87f174ca4cbfd222a5ad8f7276acd9d86ad0f81cd7aab4d7c08d7", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 1, + "row": 2477 + }, + { + "path": "misc/compute_cov.m", + "sha256": "1d405786c0d469fb89984c2653eed28d6a7ce1e03920fd1e2852b8b99ddeed1d", + "language": "MATLAB", + "lines": 9, + "truncated": false, + "block": 1, + "row": 2333 + }, + { + "path": "misc/find_nearest_id.m", + "sha256": "2541033c7745b02a9139cf8184d9c7fde9d01e45996b2c9b83c5892a92c3086e", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 1, + "row": 2348 + }, + { + "path": "misc/get_significant_pdc.m", + "sha256": "fc90ec31513a08e725209374765ea8dae1b428df937664431c0f7f76e8492df5", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 1, + "row": 2651 + }, + { + "path": "misc/get_significant_pdc_mr.m", + "sha256": "861bd24af3bf1c7bb925b08dd0380a44847c7f41759ed31e1031ee12d71464a3", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 1, + "row": 2964 + }, + { + "path": "misc/get_true_pdc.m", + "sha256": "1532284efb8aa228d1ff163c2c1bdc56c6c0bfe0f48e7880a369f81dca9535af", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 1, + "row": 2310 + }, + { + "path": "misc/map_locs_to_mne.m", + "sha256": "03c457945a07826f71cbe3c9df5b76f67d62aaa3266eed2a9629e33c3f5a7b49", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 1, + "row": 2635 + }, + { + "path": "misc/re_arrange_A.m", + "sha256": "d44637d9b51c921921c9b62c7ce18fe64c8b942214a89cdd5e57b863ef71afaa", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 1, + "row": 2460 + }, + { + "path": "two_step_est/source_localizers/MCMV_beamformer_localizer.m", + "sha256": "10086bcc2dccada5c279b0d04ae5034303929c06e274fad2365386e1bc3fcefa", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 1, + "row": 2663 + }, + { + "path": "two_step_est/source_localizers/MCMV_beamformer_localizer_reg.m", + "sha256": "4ec709efb605c2fa21390b67659af1e336ecd927f4b35fb9d07a5c2e85e8c48d", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 1, + "row": 2828 + }, + { + "path": "two_step_est/source_localizers/check_loc_error.m", + "sha256": "497fddada2f87f174ca4cbfd222a5ad8f7276acd9d86ad0f81cd7aab4d7c08d7", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 1, + "row": 2477 + }, + { + "path": "two_step_est/source_localizers/compute_LCMV_reg.m", + "sha256": "c241ed70641e124cf03aac57d1289a58a49525bc2162417c0b15b32a020ddc8f", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 1, + "row": 2440 + }, + { + "path": "two_step_est/source_localizers/compute_ai.m", + "sha256": "5d5f42544008ec716c1c4a1537fad21c0bdf93e0801060c4b4cc6190fb02a524", + "language": "MATLAB", + "lines": 4, + "truncated": false, + "block": 1, + "row": 2282 + }, + { + "path": "two_step_est/source_localizers/compute_mai.m", + "sha256": "9058ecab70e5c63b8ba0335d63fc7109f52232309a2760484f1697baa26cf942", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 1, + "row": 2317 + }, + { + "path": "two_step_est/source_localizers/mkfilt_lcmv.m", + "sha256": "00f095a86da8d9c2faf134b672ba5f6c90861fdd5c580ba39acea5d0ed148a27", + "language": "MATLAB", + "lines": 65, + "truncated": false, + "block": 1, + "row": 3124 + } + ] +} \ No newline at end of file diff --git a/manifests/12/zenodo__10855006.json b/manifests/12/zenodo__10855006.json new file mode 100644 index 0000000000000000000000000000000000000000..ca42c846152a203daf3f6b8f69a40a7bbfb3fd86 --- /dev/null +++ b/manifests/12/zenodo__10855006.json @@ -0,0 +1,21 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:10855006", + "url": "https://doi.org/10.5281/zenodo.10855006", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "Code Sample.nb", + "sha256": "ffff4f146b5480ee3b068b8bf7f66b067407243f6a8fd1f27888f9e1a80d2be9", + "language": "Mathematica", + "lines": 802, + "truncated": false, + "block": 1, + "row": 4368 + } + ] +} \ No newline at end of file diff --git a/manifests/12/zenodo__16998131.json b/manifests/12/zenodo__16998131.json new file mode 100644 index 0000000000000000000000000000000000000000..142a58915ab0bfa68b0d091aea8c85f3845fa656 --- /dev/null +++ b/manifests/12/zenodo__16998131.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:16998131", + "url": "http://dx.doi.org/10.5281/zenodo.16998131", + "host": "zenodo.org", + "commit": "", + "license": "CC0-1.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "a2010f343487d3f7618affe54f789f5487602331c0a8d03f49e9a7c547cf0499", + "language": "License", + "lines": 121, + "truncated": false, + "block": 1, + "row": 2210 + }, + { + "path": "README.md", + "sha256": "f5a9a3327806f13fa76088047751d8ae88fc21647c324a2bda242eb13c185e4d", + "language": "Text", + "lines": 393, + "truncated": false, + "block": 1, + "row": 11985 + }, + { + "path": "data_analysis_final.R", + "sha256": "dc0ec8c15644ebf49d8e8c58a8f04bfb77670bca30ee80ae1be61312db27d69a", + "language": "R", + "lines": 2592, + "truncated": false, + "block": 1, + "row": 10616 + } + ] +} \ No newline at end of file diff --git a/manifests/13/github.com__ysu001__pup.json b/manifests/13/github.com__ysu001__pup.json new file mode 100644 index 0000000000000000000000000000000000000000..353b72d8ab982f1341b24c10946e9918f013ac20 --- /dev/null +++ b/manifests/13/github.com__ysu001__pup.json @@ -0,0 +1,2505 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ysu001/pup", + "url": "https://github.com/ysu001/PUP", + "host": "github.com", + "commit": "746dd5dce34807d85a820ac02aa22887a71005ed", + "license": "BSD-3-Clause", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "4dfp/4dfptoanalyze/4dfptoanalyze.c", + "sha256": "2a89a3bbc4f647553f64d52f90331277b025a957729ea21cbd5d1d6309a8eb31", + "language": "C", + "lines": 268, + "truncated": false, + "block": 1, + "row": 123 + }, + { + "path": "4dfp/JSSutil/JSSnrutil.c", + "sha256": "2fedd2ec144adadd50468787e6b62113557ab912c3a0d459070d2b4d6d3dea9a", + "language": "C", + "lines": 229, + "truncated": false, + "block": 1, + "row": 93 + }, + { + "path": "4dfp/JSSutil/JSSstatistics.c", + "sha256": "90261f58db6ba8387e46ebb9d37d79e655f03054e1be81d0c018be093882a109", + "language": "C", + "lines": 382, + "truncated": false, + "block": 1, + "row": 120 + }, + { + "path": "4dfp/JSSutil/JSSstatistics.h", + "sha256": "14f5d8e24d4659aec8235ec29364154ae308f16e7abaf9d43ece8beaa4219cb6", + "language": "C/C++", + "lines": 48, + "truncated": false, + "block": 1, + "row": 341 + }, + { + "path": "4dfp/JSSutil/JSSutil.h", + "sha256": "b9006f101423190fe911c373361284d056e22f47db47588b3b650eb8fd0a736d", + "language": "C/C++", + "lines": 89, + "truncated": false, + "block": 1, + "row": 381 + }, + { + "path": "4dfp/JSSutil/lin_algebra.c", + "sha256": "19e8c84c949563ed6e3424d35d8fd03950c6f2e9515346929211c76be78fec95", + "language": "C", + "lines": 460, + "truncated": false, + "block": 1, + "row": 135 + }, + { + "path": "4dfp/JSSutil/random.c", + "sha256": "de7922b27debba6e4e1afa7508a15e781d6f89261e12807fb8b2d07f68fa173f", + "language": "C", + "lines": 89, + "truncated": false, + "block": 1, + "row": 26 + }, + { + "path": "4dfp/S2T_4dfp/C2T_4dfp.c", + "sha256": "1900af71c754ce96bd4b9e8a9ff8c58977b3cab5b06501756a97dff1f35d771e", + "language": "C", + "lines": 162, + "truncated": false, + "block": 1, + "row": 77 + }, + { + "path": "4dfp/S2T_4dfp/S2T_4dfp.c", + "sha256": "d207d8e68dc160482f976fd7902d013a44455daa7d125bcb5fd56a1754198546", + "language": "C", + "lines": 158, + "truncated": false, + "block": 1, + "row": 75 + }, + { + "path": "4dfp/S2T_4dfp/T2C_4dfp.c", + "sha256": "8ebc81387d75c130b46819a4ea7ceba46f7fea39109e25f13958cc8540f24c9e", + "language": "C", + "lines": 153, + "truncated": false, + "block": 1, + "row": 68 + }, + { + "path": "4dfp/S2T_4dfp/T2S_4dfp.c", + "sha256": "817f6f75ad2b99f6d3d1da877944f49498d2248c8d9aaa74297ab6c9b77a3913", + "language": "C", + "lines": 152, + "truncated": false, + "block": 1, + "row": 71 + }, + { + "path": "4dfp/TRX/ANALYZE.h", + "sha256": "3f3ae06ad9dae259ee92175ba132e2a56c852bb71beff392bdd4de1880c88620", + "language": "C/C++", + "lines": 66, + "truncated": false, + "block": 1, + "row": 358 + }, + { + "path": "4dfp/TRX/Getifh.c", + "sha256": "d7dc55665edc427fcbe8a365d808003fdba74358ff6e560b35423971c9ddc2e6", + "language": "C", + "lines": 317, + "truncated": false, + "block": 1, + "row": 149 + }, + { + "path": "4dfp/TRX/Getifh.h", + "sha256": "238eb081df13fa2dad320549754325b6e885b38004c67f3eaf4377f0b6e3d8a2", + "language": "C/C++", + "lines": 43, + "truncated": false, + "block": 1, + "row": 365 + }, + { + "path": "4dfp/TRX/Inithdr.c", + "sha256": "b8157ed7b9fac6e5cbd99c076c84602ea65de2041f8e20a4b582ddae78829b9a", + "language": "C", + "lines": 111, + "truncated": false, + "block": 1, + "row": 53 + }, + { + "path": "4dfp/TRX/asciito4dfp.c", + "sha256": "b19bb634f8fecbb6230faa2505c50b82e9ad653781dc86c1dc67375c11d7ac4a", + "language": "C", + "lines": 161, + "truncated": false, + "block": 1, + "row": 59 + }, + { + "path": "4dfp/TRX/endian_4dfp.c", + "sha256": "a8adccb4961df505ed719e8bbd9a562e3ae9684551db854779c58c08bbaae10d", + "language": "C", + "lines": 182, + "truncated": false, + "block": 1, + "row": 83 + }, + { + "path": "4dfp/TRX/endianio.c", + "sha256": "210b59e460205e4d04eb6ece34d2d07df444ce0d698e8c95d7c2dc40aa3fbc1a", + "language": "C", + "lines": 343, + "truncated": false, + "block": 1, + "row": 143 + }, + { + "path": "4dfp/TRX/endianio.h", + "sha256": "dbd22e5a84649a8b73542bba9228e6a1dfd9ca26405e454231a53e171b513048", + "language": "C/C++", + "lines": 55, + "truncated": false, + "block": 1, + "row": 388 + }, + { + "path": "4dfp/TRX/ifh.h", + "sha256": "b4d3df46aae1513a841156469c2b3e421d76cbf5585cf4965565fb952ab3a972", + "language": "C/C++", + "lines": 50, + "truncated": false, + "block": 1, + "row": 357 + }, + { + "path": "4dfp/TRX/ifh2hdr.c", + "sha256": "9b1a3b7beffb765218000e9f883dd0920bc67f0c986f5adecaaa69a4c4979b89", + "language": "C", + "lines": 134, + "truncated": false, + "block": 1, + "row": 55 + }, + { + "path": "4dfp/TRX/rec.c", + "sha256": "042100b256aa6ad2f9a0b43db1fa0deabcf38e11fa4199eb37088a770ed0765b", + "language": "C", + "lines": 276, + "truncated": false, + "block": 1, + "row": 116 + }, + { + "path": "4dfp/TRX/rec.h", + "sha256": "7acf7180e893acad8502e7b6bb3afb91b9653bd8e13d7a50bbdf9f61e70426b1", + "language": "C/C++", + "lines": 33, + "truncated": false, + "block": 1, + "row": 342 + }, + { + "path": "4dfp/TRX/spline23dvgh.h", + "sha256": "2fd6da858c314fa2eb07dcd6129fac883cfd3c0e2a906a449e73c031fe057923", + "language": "C/C++", + "lines": 45, + "truncated": false, + "block": 1, + "row": 360 + }, + { + "path": "4dfp/TRX/spline23dvgh_test.c", + "sha256": "e9825d1cee07160863c34b8b48ffb64a2fff354525c8db022a6c0b2a92578cd5", + "language": "C", + "lines": 69, + "truncated": false, + "block": 1, + "row": 27 + }, + { + "path": "4dfp/actmapf_4dfp/GC_4dfp.c", + "sha256": "c3ce42303af68a78205784de0bdeb03e20584e722eed2130eaded3fc7bb5c56c", + "language": "C", + "lines": 586, + "truncated": false, + "block": 1, + "row": 176 + }, + { + "path": "4dfp/actmapf_4dfp/GC_dat.c", + "sha256": "35269487deec84692717df1e88f4ca771ca5a6d4437184a6f7c8c490df6ba21b", + "language": "C", + "lines": 503, + "truncated": false, + "block": 1, + "row": 170 + }, + { + "path": "4dfp/actmapf_4dfp/LDA.c", + "sha256": "19456626574cdb2261eba205c74ad14355f4820841d550db3c2650a88f01a3cb", + "language": "C", + "lines": 512, + "truncated": false, + "block": 1, + "row": 167 + }, + { + "path": "4dfp/actmapf_4dfp/LOWESS.c", + "sha256": "670220c67c87b76e668978bf506a00bf8068c5e272461135f5847b3ddbcb3496", + "language": "C", + "lines": 243, + "truncated": false, + "block": 1, + "row": 97 + }, + { + "path": "4dfp/actmapf_4dfp/actmapf_4dfp.c", + "sha256": "51ab31baf175a1c9d08ae11e6b8d4f52102316f2bf47d03020e1c3eaf487304c", + "language": "C", + "lines": 438, + "truncated": false, + "block": 1, + "row": 156 + }, + { + "path": "4dfp/actmapf_4dfp/compute_defined_4dfp.c", + "sha256": "111a1761df801be3ccea84122c371666501158435d3f0e3fdf6cdcff7b2d85bf", + "language": "C", + "lines": 193, + "truncated": false, + "block": 1, + "row": 87 + }, + { + "path": "4dfp/actmapf_4dfp/conc.c", + "sha256": "611195bdb47d921d9d9d6eb32e9362e0c1d7c60f64332d43b04fc864071ce6f8", + "language": "C", + "lines": 323, + "truncated": false, + "block": 1, + "row": 151 + }, + { + "path": "4dfp/actmapf_4dfp/conc.h", + "sha256": "e08de7a822e27ed56e43c93b520b0b5b95355c0b004cde634aa56bd88557572d", + "language": "C/C++", + "lines": 54, + "truncated": false, + "block": 1, + "row": 351 + }, + { + "path": "4dfp/actmapf_4dfp/conc_test.c", + "sha256": "3c66edae820f2a4104c08ff7ad3ea5da8d02de153a9c7e740ca15ea3cedc2fbd", + "language": "C", + "lines": 164, + "truncated": false, + "block": 1, + "row": 85 + }, + { + "path": "4dfp/actmapf_4dfp/condense.c", + "sha256": "0d23efd0a040ce1c3be4cc8bab9378a78ad36fec488812cff770a6c9eff7336e", + "language": "C", + "lines": 159, + "truncated": false, + "block": 1, + "row": 84 + }, + { + "path": "4dfp/actmapf_4dfp/covariance.c", + "sha256": "e230c97093373fbe93dbf654d962b0792f463701547ac6867e653864ce1d306e", + "language": "C", + "lines": 870, + "truncated": false, + "block": 1, + "row": 195 + }, + { + "path": "4dfp/actmapf_4dfp/covariance_analysis.c", + "sha256": "3e64d8c2340b29d466556dc5c1daf4e490cfa0643d37600fc12647f16aaa9032", + "language": "C", + "lines": 340, + "truncated": false, + "block": 1, + "row": 136 + }, + { + "path": "4dfp/actmapf_4dfp/expandf.c", + "sha256": "3dcf30b1c3d8a74e5f418ee69e48327765a3947f4d40986abf58b61a70cb3c24", + "language": "C", + "lines": 171, + "truncated": false, + "block": 1, + "row": 72 + }, + { + "path": "4dfp/actmapf_4dfp/format2lst.c", + "sha256": "f89b56c195a1ee7844a51f633f48c5ad4c11ac93f3f4af79060359e51ef8cfc8", + "language": "C", + "lines": 91, + "truncated": false, + "block": 1, + "row": 37 + }, + { + "path": "4dfp/actmapf_4dfp/glm_4dfp.c", + "sha256": "096b93196523d11a38ed3b01e601f107ed37d0f65b5fe3b1a109803280f878b4", + "language": "C", + "lines": 782, + "truncated": false, + "block": 1, + "row": 189 + }, + { + "path": "4dfp/actmapf_4dfp/mat_algebra.c", + "sha256": "167b6927609bea1d6d5ab8d3aea4d8f2fcc886044b87054057a1b03c69de2862", + "language": "C", + "lines": 453, + "truncated": false, + "block": 1, + "row": 153 + }, + { + "path": "4dfp/aff_conv/aff_conv.c", + "sha256": "72e8d40c689c25328a38d084a8f4e0d2d161ea9f081bc57570538a4c7d3def02", + "language": "C", + "lines": 573, + "truncated": false, + "block": 1, + "row": 168 + }, + { + "path": "4dfp/algebra_4dfp/RFX_4dfp.c", + "sha256": "704fe1a1430f3dd95fa6531940308c3b5b3b110f820717e927c141e0447e2119", + "language": "C", + "lines": 346, + "truncated": false, + "block": 1, + "row": 139 + }, + { + "path": "4dfp/algebra_4dfp/ROI_resolve_4dfp.c", + "sha256": "223b9091dc9098f62dd8a65a24b0997f0daecf3083af3df5512dc30064dbe3ce", + "language": "C", + "lines": 284, + "truncated": false, + "block": 1, + "row": 128 + }, + { + "path": "4dfp/algebra_4dfp/imgopr_4dfp.c", + "sha256": "ec9d10f5b15d335bf87d26827c806b4a9885aa02c0bb646450df23e3365ef103", + "language": "C", + "lines": 426, + "truncated": false, + "block": 1, + "row": 154 + }, + { + "path": "4dfp/algebra_4dfp/spatial_corr_4dfp.c", + "sha256": "f280bd7ae77a40210275982b9c2d6e6dc178b8c48a40d40f93e5697d523d92cc", + "language": "C", + "lines": 223, + "truncated": false, + "block": 1, + "row": 101 + }, + { + "path": "4dfp/algebra_4dfp/spatial_cov_multivol_4dfp.c", + "sha256": "67325d01979edf27b1b3df6990fc0d633524fa5d38e09657adbf482def5ab56e", + "language": "C", + "lines": 215, + "truncated": false, + "block": 1, + "row": 103 + }, + { + "path": "4dfp/analyzeto4dfp/analyzeto4dfp.c", + "sha256": "2a8cbf3deb924f47573f7f3bc6b9372886fac00d3e916ec3e22875bb572c74de", + "language": "C", + "lines": 340, + "truncated": false, + "block": 1, + "row": 140 + }, + { + "path": "4dfp/analyzeto4dfp/hdr2txt.c", + "sha256": "261d59212942a40a94713ca29a6c04de3402533c864474a08c463e69007e8788", + "language": "C", + "lines": 106, + "truncated": false, + "block": 1, + "row": 48 + }, + { + "path": "4dfp/cluster_4dfp/cluster_4dfp.c", + "sha256": "8f5c3b141c76a6b946b62678c6d0e3429c88cf5ec03aeca0360bc0f6ff92536f", + "language": "C", + "lines": 501, + "truncated": false, + "block": 1, + "row": 172 + }, + { + "path": "4dfp/collate_slice_4dfp/collate_slice_4dfp.c", + "sha256": "1d2bb9dd842755b78559a149feae550e63ee99699965bb196e9fd93e04b344f8", + "language": "C", + "lines": 195, + "truncated": false, + "block": 1, + "row": 95 + }, + { + "path": "4dfp/crop_4dfp/crop_4dfp.c", + "sha256": "6247e8c3e527bce5241471b5ec224270bc75232d6b16908d50beb4f0d1063bc5", + "language": "C", + "lines": 314, + "truncated": false, + "block": 1, + "row": 137 + }, + { + "path": "4dfp/crop_4dfp/zero_slice_4dfp.c", + "sha256": "c5aeab66097a6c0450f14ff4d7151eff20a636477d76558100dc8b0992898693", + "language": "C", + "lines": 236, + "truncated": false, + "block": 1, + "row": 117 + }, + { + "path": "4dfp/cross_realign3d_4dfp/cross_realign3d_4dfp.c", + "sha256": "c4283078f4c240f3ed4dcc6393eb750e1002a3366cab9e4515d1eb2d6087aaca", + "language": "C", + "lines": 697, + "truncated": false, + "block": 1, + "row": 193 + }, + { + "path": "4dfp/cross_realign3d_4dfp/gauss2diz.c", + "sha256": "0302f19f6b5df8d27d3307abb0981dcc0ce50656359813598038a2fa122b12c1", + "language": "C", + "lines": 32, + "truncated": false, + "block": 1, + "row": 14 + }, + { + "path": "4dfp/cross_realign3d_4dfp/gauss3diz.c", + "sha256": "357206fd5d3abbce48dd09ea392ac82368947fdf53a714473e83b26618e8dd87", + "language": "C", + "lines": 42, + "truncated": false, + "block": 1, + "row": 21 + }, + { + "path": "4dfp/cross_realign3d_4dfp/mat2dat.c", + "sha256": "2dc6e5f30c12f4ff811e938441eb9cfe9419ebda2f2ae0641409fd2c89a26cb9", + "language": "C", + "lines": 340, + "truncated": false, + "block": 1, + "row": 150 + }, + { + "path": "4dfp/cs2ap_4dfp/cs2ap_4dfp.c", + "sha256": "ebf9e7573e69a48b8442922833bf1071b83743aeccedd580ab5cbc486437f8fa", + "language": "C", + "lines": 162, + "truncated": false, + "block": 1, + "row": 81 + }, + { + "path": "4dfp/dcm_dump_file/condition.c", + "sha256": "5514d053c9cbb23ff2da1f9ca6763eed35dc355b463383cb413b550fa770f06e", + "language": "C", + "lines": 558, + "truncated": false, + "block": 1, + "row": 158 + }, + { + "path": "4dfp/dcm_dump_file/ctnthread.c", + "sha256": "87dbd2f321304466529eca1666a78490ee14eb4a2467ea9a660eb62a622c3dac", + "language": "C", + "lines": 218, + "truncated": false, + "block": 1, + "row": 89 + }, + { + "path": "4dfp/dcm_dump_file/dcm.c", + "sha256": "10afa78a2d42b0bca5736582178706ab0c01f90a761d2ca378b1584870c2f2d3", + "language": "C", + "lines": 7314, + "truncated": true, + "block": 1, + "row": 204 + }, + { + "path": "4dfp/dcm_dump_file/dcm_dump_file.c", + "sha256": "b7789d9e8ae548a5e058b3a93303a4e5a756f4e01988a18463adb5b2d6889c1c", + "language": "C", + "lines": 273, + "truncated": false, + "block": 1, + "row": 113 + }, + { + "path": "4dfp/dcm_dump_file/dcmcond.c", + "sha256": "ef4582042e0cd74a3981b4ba0f15f64aee6ec180bbef92384873b63593813e67", + "language": "C", + "lines": 173, + "truncated": false, + "block": 1, + "row": 109 + }, + { + "path": "4dfp/dcm_dump_file/dcmdict.c", + "sha256": "812a22201f0810fc200efc98c10f9b0f7fc34d7fe22235853657c965be8744d2", + "language": "C", + "lines": 2144, + "truncated": false, + "block": 1, + "row": 202 + }, + { + "path": "4dfp/dcm_dump_file/dcmsupport.c", + "sha256": "44d573105f4a13cdec7abfe2b95a9eb080fe3ad2d1c0fc82bb71131a0c64224e", + "language": "C", + "lines": 229, + "truncated": false, + "block": 1, + "row": 99 + }, + { + "path": "4dfp/dcm_dump_file/include/condition.h", + "sha256": "fbb6bd5d13f155d8aaa6cebc68e5f64e8be9b15e5c2760e7a36ec664c3dd030e", + "language": "C/C++", + "lines": 88, + "truncated": false, + "block": 1, + "row": 382 + }, + { + "path": "4dfp/dcm_dump_file/include/ctnthread.h", + "sha256": "2a1610c846cbe8d939f19b5be230a99f29a34a2dd8620d220d1d642682fdd284", + "language": "C/C++", + "lines": 79, + "truncated": false, + "block": 1, + "row": 375 + }, + { + "path": "4dfp/dcm_dump_file/include/dcmprivate.h", + "sha256": "ca3b19c13bdbefbd2477a9aad07302c6c46c181f7ac9e38e7274c9666d5e4f9f", + "language": "C/C++", + "lines": 162, + "truncated": false, + "block": 1, + "row": 406 + }, + { + "path": "4dfp/dcm_dump_file/include/dicom.h", + "sha256": "c37108a5fa254b57f839eae7d1e5c545d52aace6638a07acfac0e1cc0f165812", + "language": "C/C++", + "lines": 272, + "truncated": false, + "block": 1, + "row": 420 + }, + { + "path": "4dfp/dcm_dump_file/include/dicom_objects.h", + "sha256": "0433e22d3bc01602b359cdd42d24d17dffbcb86b691a626f3499bdf7c7c088a4", + "language": "C/C++", + "lines": 1704, + "truncated": false, + "block": 1, + "row": 439 + }, + { + "path": "4dfp/dcm_dump_file/include/dicom_uids.h", + "sha256": "16ddb5f6548415e61921e254de27f5acc6e5a02a061ea65498b816904df39f44", + "language": "C/C++", + "lines": 264, + "truncated": false, + "block": 1, + "row": 426 + }, + { + "path": "4dfp/dcm_dump_file/include/lst.h", + "sha256": "212255e714383e2805c27a66ed31af7a4aec4595f4bd3295212327a5befa7568", + "language": "C/C++", + "lines": 104, + "truncated": false, + "block": 1, + "row": 395 + }, + { + "path": "4dfp/dcm_dump_file/include/lstprivate.h", + "sha256": "508e5ac87ad126dc4afdea510eaac92b83e55dfe4f75ef760e02707126abd336", + "language": "C/C++", + "lines": 71, + "truncated": false, + "block": 1, + "row": 368 + }, + { + "path": "4dfp/dcm_dump_file/include/utility.h", + "sha256": "38464aff388cfe528d3cfcafa0edc577626d08a9f69356aade7d6d97546e5d66", + "language": "C/C++", + "lines": 121, + "truncated": false, + "block": 1, + "row": 404 + }, + { + "path": "4dfp/dcm_dump_file/lst.c", + "sha256": "fb40e6eac911c68ff74324f750cfef8c6a4c28f0b972662789775b1aeb7b18a9", + "language": "C", + "lines": 539, + "truncated": false, + "block": 1, + "row": 165 + }, + { + "path": "4dfp/dcm_dump_file/utility.c", + "sha256": "16a3e17042edfd4b41d865a9632a10405fa218e96b60d43f24a4ac901ca4269c", + "language": "C", + "lines": 1093, + "truncated": false, + "block": 1, + "row": 184 + }, + { + "path": "4dfp/dcm_pet/condition.c", + "sha256": "5514d053c9cbb23ff2da1f9ca6763eed35dc355b463383cb413b550fa770f06e", + "language": "C", + "lines": 558, + "truncated": false, + "block": 1, + "row": 158 + }, + { + "path": "4dfp/dcm_pet/config.h", + "sha256": "8e3090f0c7b769d97dcece2515cd4be8fd633c66440c66ef99fb6323da8b9905", + "language": "C/C++", + "lines": 197, + "truncated": false, + "block": 1, + "row": 409 + }, + { + "path": "4dfp/dcm_pet/ctnthread.c", + "sha256": "87dbd2f321304466529eca1666a78490ee14eb4a2467ea9a660eb62a622c3dac", + "language": "C", + "lines": 218, + "truncated": false, + "block": 1, + "row": 89 + }, + { + "path": "4dfp/dcm_pet/dcm.c", + "sha256": "d940272d4052ee5f313dc7a7a1f479c43ff9fc21561c63bbce1267aff881d28b", + "language": "C", + "lines": 7363, + "truncated": true, + "block": 1, + "row": 205 + }, + { + "path": "4dfp/dcm_pet/dcm_pet.c", + "sha256": "4e020592f2943e99e9bcc81800341b77fc10678f35079320563e39fe70268348", + "language": "C", + "lines": 2744, + "truncated": false, + "block": 1, + "row": 200 + }, + { + "path": "4dfp/dcm_pet/dcmcond.c", + "sha256": "db0a8fdf9c80aa54a88ed19693ded9e00bd3bcab9aa338731dec7aae4adb88e0", + "language": "C", + "lines": 165, + "truncated": false, + "block": 1, + "row": 105 + }, + { + "path": "4dfp/dcm_pet/dcmdict.c", + "sha256": "812a22201f0810fc200efc98c10f9b0f7fc34d7fe22235853657c965be8744d2", + "language": "C", + "lines": 2144, + "truncated": false, + "block": 1, + "row": 202 + }, + { + "path": "4dfp/dcm_pet/dcmsupport.c", + "sha256": "44d573105f4a13cdec7abfe2b95a9eb080fe3ad2d1c0fc82bb71131a0c64224e", + "language": "C", + "lines": 229, + "truncated": false, + "block": 1, + "row": 99 + }, + { + "path": "4dfp/dcm_pet/include/common_disp.h", + "sha256": "c62d395afec5a2df976e43790c4f8f8c516a8d1b5b29aea27304aba91c2dd261", + "language": "C/C++", + "lines": 130, + "truncated": false, + "block": 1, + "row": 408 + }, + { + "path": "4dfp/dcm_pet/include/condition.h", + "sha256": "fbb6bd5d13f155d8aaa6cebc68e5f64e8be9b15e5c2760e7a36ec664c3dd030e", + "language": "C/C++", + "lines": 88, + "truncated": false, + "block": 1, + "row": 382 + }, + { + "path": "4dfp/dcm_pet/include/ctn_os.h", + "sha256": "f90e2be4ff7e3cb23d6d3d9b4cd654be40d797b651631faa840685d7545ff8fc", + "language": "C/C++", + "lines": 113, + "truncated": false, + "block": 1, + "row": 384 + }, + { + "path": "4dfp/dcm_pet/include/ctnthread.h", + "sha256": "2a1610c846cbe8d939f19b5be230a99f29a34a2dd8620d220d1d642682fdd284", + "language": "C/C++", + "lines": 79, + "truncated": false, + "block": 1, + "row": 375 + }, + { + "path": "4dfp/dcm_pet/include/dcm_pet.h", + "sha256": "488072b67cc400f0c59bd81cf3ee316a17b7bdb114ed2690a809792d930b4fd7", + "language": "C/C++", + "lines": 130, + "truncated": false, + "block": 1, + "row": 413 + }, + { + "path": "4dfp/dcm_pet/include/dcmprivate.h", + "sha256": "ca3b19c13bdbefbd2477a9aad07302c6c46c181f7ac9e38e7274c9666d5e4f9f", + "language": "C/C++", + "lines": 162, + "truncated": false, + "block": 1, + "row": 406 + }, + { + "path": "4dfp/dcm_pet/include/dicom.h", + "sha256": "c37108a5fa254b57f839eae7d1e5c545d52aace6638a07acfac0e1cc0f165812", + "language": "C/C++", + "lines": 272, + "truncated": false, + "block": 1, + "row": 420 + }, + { + "path": "4dfp/dcm_pet/include/dicom_chr.h", + "sha256": "f6002f2de61ff871d11870471baf58e1e5803c2416425575607a828839816068", + "language": "C/C++", + "lines": 108, + "truncated": false, + "block": 1, + "row": 397 + }, + { + "path": "4dfp/dcm_pet/include/dicom_objects.h", + "sha256": "0433e22d3bc01602b359cdd42d24d17dffbcb86b691a626f3499bdf7c7c088a4", + "language": "C/C++", + "lines": 1704, + "truncated": false, + "block": 1, + "row": 439 + }, + { + "path": "4dfp/dcm_pet/include/dicom_sq.h", + "sha256": "16791e20a155545543927100e6ba9953db9bd244890ad96415042294bab8de77", + "language": "C/C++", + "lines": 710, + "truncated": false, + "block": 1, + "row": 434 + }, + { + "path": "4dfp/dcm_pet/include/dicom_uids.h", + "sha256": "16ddb5f6548415e61921e254de27f5acc6e5a02a061ea65498b816904df39f44", + "language": "C/C++", + "lines": 264, + "truncated": false, + "block": 1, + "row": 426 + }, + { + "path": "4dfp/dcm_pet/include/dulprotocol.h", + "sha256": "312004e83ea9cc142952b7673dbd8ad69318dcd933e0edef6f572479faecbdd6", + "language": "C/C++", + "lines": 477, + "truncated": false, + "block": 1, + "row": 432 + }, + { + "path": "4dfp/dcm_pet/include/lst.h", + "sha256": "212255e714383e2805c27a66ed31af7a4aec4595f4bd3295212327a5befa7568", + "language": "C/C++", + "lines": 104, + "truncated": false, + "block": 1, + "row": 395 + }, + { + "path": "4dfp/dcm_pet/include/lstprivate.h", + "sha256": "508e5ac87ad126dc4afdea510eaac92b83e55dfe4f75ef760e02707126abd336", + "language": "C/C++", + "lines": 71, + "truncated": false, + "block": 1, + "row": 368 + }, + { + "path": "4dfp/dcm_pet/include/utility.h", + "sha256": "38464aff388cfe528d3cfcafa0edc577626d08a9f69356aade7d6d97546e5d66", + "language": "C/C++", + "lines": 121, + "truncated": false, + "block": 1, + "row": 404 + }, + { + "path": "4dfp/dcm_pet/lst.c", + "sha256": "fb40e6eac911c68ff74324f750cfef8c6a4c28f0b972662789775b1aeb7b18a9", + "language": "C", + "lines": 539, + "truncated": false, + "block": 1, + "row": 165 + }, + { + "path": "4dfp/dcm_pet/pixel_ops.c", + "sha256": "58f62144c533ddf372ec4b79708cc00b672d94a5c06182a4216121076bae5dfd", + "language": "C", + "lines": 199, + "truncated": false, + "block": 1, + "row": 86 + }, + { + "path": "4dfp/dcm_pet/sequences.c", + "sha256": "a8752c7399701a47a297b8d60e55a3f69eb8a270e95741a08a5e12436478a5a9", + "language": "C", + "lines": 3131, + "truncated": false, + "block": 1, + "row": 201 + }, + { + "path": "4dfp/dcm_pet/sqcond.c", + "sha256": "1049fd9b235f422058071a98f2c6af1f9a23082aec3a6120069bd662717c9d3b", + "language": "C", + "lines": 112, + "truncated": false, + "block": 1, + "row": 60 + }, + { + "path": "4dfp/dcm_pet/utility.c", + "sha256": "9807411c46ca61bac0982e9bc2b04f26d6506276401eded326891fb8f0504d98", + "language": "C", + "lines": 1093, + "truncated": false, + "block": 1, + "row": 183 + }, + { + "path": "4dfp/dcm_to_4dfp/condition.c", + "sha256": "5d3cc37d0d9f99e9f25b5948a9bcb3dc7b0b7074224b57e34e11fa08a0bae779", + "language": "C", + "lines": 558, + "truncated": false, + "block": 1, + "row": 159 + }, + { + "path": "4dfp/dcm_to_4dfp/config.h", + "sha256": "f2987bc88debb99943db5c3c253b5dce02f81fee602564ce0987e22789b672d3", + "language": "C/C++", + "lines": 198, + "truncated": false, + "block": 1, + "row": 410 + }, + { + "path": "4dfp/dcm_to_4dfp/ctnthread.c", + "sha256": "0576efb3b418fb281950d224d06860f209b3e3eec2dd06215a530a4406a0c19c", + "language": "C", + "lines": 218, + "truncated": false, + "block": 1, + "row": 90 + }, + { + "path": "4dfp/dcm_to_4dfp/dcm.c", + "sha256": "d940272d4052ee5f313dc7a7a1f479c43ff9fc21561c63bbce1267aff881d28b", + "language": "C", + "lines": 7363, + "truncated": true, + "block": 1, + "row": 205 + }, + { + "path": "4dfp/dcm_to_4dfp/dcm_to_4dfp.c", + "sha256": "0d94b8e7e4c4c4507371ae5f587fa6cf8ba3b5a807167a46a42186b2b903901b", + "language": "C", + "lines": 1799, + "truncated": false, + "block": 1, + "row": 199 + }, + { + "path": "4dfp/dcm_to_4dfp/dcmcond.c", + "sha256": "e7a3b5793593671e87cd71c3b8682cb941f10e9e986a911ce0d5c6c6f802e9a2", + "language": "C", + "lines": 169, + "truncated": false, + "block": 1, + "row": 106 + }, + { + "path": "4dfp/dcm_to_4dfp/dcmdict.c", + "sha256": "2674bd30a0f7e9737c2140f75f8b73db7f46a9821cb80f48cd35aa0d28f8d5b3", + "language": "C", + "lines": 2144, + "truncated": false, + "block": 1, + "row": 203 + }, + { + "path": "4dfp/dcm_to_4dfp/dcmsupport.c", + "sha256": "eda1d96c977ab085d198f61df400f2b94e7199588f020c9f0f46ddd0c5bd5c06", + "language": "C", + "lines": 229, + "truncated": false, + "block": 1, + "row": 100 + }, + { + "path": "4dfp/dcm_to_4dfp/gitversion.c", + "sha256": "e6e212e2cdb07ec797742b3f46b3484ed0798b298b51cbbcb461bd97468577d5", + "language": "C", + "lines": 2, + "truncated": false, + "block": 1, + "row": 0 + }, + { + "path": "4dfp/dcm_to_4dfp/include/condition.h", + "sha256": "1f8be463828933c793db22fe56eaa375c185d5127e846a365c46a03088737f57", + "language": "C/C++", + "lines": 88, + "truncated": false, + "block": 1, + "row": 383 + }, + { + "path": "4dfp/dcm_to_4dfp/include/ctnthread.h", + "sha256": "f99100521f56c13a2e798492b2506e986a1c6873c57753d1085ac1522bacfeaa", + "language": "C/C++", + "lines": 79, + "truncated": false, + "block": 1, + "row": 376 + }, + { + "path": "4dfp/dcm_to_4dfp/include/dcm_to_analyze.h", + "sha256": "090ba2be157e4ebbeab9090f283ec03a78c6976dd0ba96a8989cb40590e27261", + "language": "C/C++", + "lines": 71, + "truncated": false, + "block": 1, + "row": 343 + }, + { + "path": "4dfp/dcm_to_4dfp/include/dcmprivate.h", + "sha256": "f24fe1a99fe9ffd3b9858bbaf72642fbcb82843cc809894272d54ab52045ee7c", + "language": "C/C++", + "lines": 162, + "truncated": false, + "block": 1, + "row": 407 + }, + { + "path": "4dfp/dcm_to_4dfp/include/dicom.h", + "sha256": "e6e43f7698b8ea7129013f41f22cf2980f1205163ab8c8a196e36c38514c30c1", + "language": "C/C++", + "lines": 260, + "truncated": false, + "block": 1, + "row": 417 + }, + { + "path": "4dfp/dcm_to_4dfp/include/dicom_objects.h", + "sha256": "52c179cc8d338c4186d645a87d2223f95eadfcad0284cf8f8003c2c5a18bd02a", + "language": "C/C++", + "lines": 1704, + "truncated": false, + "block": 1, + "row": 440 + }, + { + "path": "4dfp/dcm_to_4dfp/include/dicom_uids.h", + "sha256": "f9f95d9ed8373585614cf11d8efc8fc80a0910af5a88191cee2fec45ca558ca4", + "language": "C/C++", + "lines": 264, + "truncated": false, + "block": 1, + "row": 427 + }, + { + "path": "4dfp/dcm_to_4dfp/include/lst.h", + "sha256": "1bcd7fc2475cea4e3eee115527624a1ec6493b3afb43c99ccd0bda74a7a82722", + "language": "C/C++", + "lines": 104, + "truncated": false, + "block": 1, + "row": 396 + }, + { + "path": "4dfp/dcm_to_4dfp/include/lstprivate.h", + "sha256": "36e492bc5f813ad32d123eba96e0e3cfab4015eff9038b60c88f2b732147f187", + "language": "C/C++", + "lines": 71, + "truncated": false, + "block": 1, + "row": 369 + }, + { + "path": "4dfp/dcm_to_4dfp/include/utility.h", + "sha256": "e3f9dc7caa0d326b1917f8bf671a5a874da30d346854e8b17e2b3b59fde042f5", + "language": "C/C++", + "lines": 121, + "truncated": false, + "block": 1, + "row": 405 + }, + { + "path": "4dfp/dcm_to_4dfp/lst.c", + "sha256": "a1a780e4ce5d4aedaec57bd13fbee73ddc5606e9ed9692af676a16ad0e084724", + "language": "C", + "lines": 539, + "truncated": false, + "block": 1, + "row": 166 + }, + { + "path": "4dfp/dcm_to_4dfp/pixel_ops.c", + "sha256": "331c609187cb7571884f447db53aedab4d6cac232a6d750425ad23e40c0e1272", + "language": "C", + "lines": 174, + "truncated": false, + "block": 1, + "row": 62 + }, + { + "path": "4dfp/dcm_to_4dfp/test_dcm.c", + "sha256": "1b773be16c0e15f9dd4e0dbc72ba1333124b037bb657f40c3c647f1fe562d5b6", + "language": "C", + "lines": 122, + "truncated": false, + "block": 1, + "row": 54 + }, + { + "path": "4dfp/dcm_to_4dfp/test_dcm_to_4dfp.c", + "sha256": "f1b44e0bb0b4303be091ef0f22b378f72884535b1b9a5aa4ef518c1f850c2aa7", + "language": "C", + "lines": 458, + "truncated": false, + "block": 1, + "row": 171 + }, + { + "path": "4dfp/dcm_to_4dfp/utility.c", + "sha256": "07c98894d58bb3006f5b844898b6db9e7162c349ecd7f6a9791f631ca669c0c9", + "language": "C", + "lines": 1090, + "truncated": false, + "block": 1, + "row": 182 + }, + { + "path": "4dfp/deband_4dfp/deband_4dfp.c", + "sha256": "f01ad9052034f25bb0c8d88a372b04cfea6077543c6eb56c18abfd6fe3b43ad3", + "language": "C", + "lines": 321, + "truncated": false, + "block": 1, + "row": 146 + }, + { + "path": "4dfp/diff4dfp/affine_DTrot.c", + "sha256": "f94de1b89e0a7c4e184d007a2b524d9923b49864c2020570f5ff258aa9c6c50b", + "language": "C", + "lines": 247, + "truncated": false, + "block": 1, + "row": 76 + }, + { + "path": "4dfp/diff4dfp/contour.c", + "sha256": "5df9c6cc415ee7e2b0864554165ddcc922f0cf618dcce49feacd0104d1ba57c9", + "language": "C", + "lines": 608, + "truncated": false, + "block": 1, + "row": 169 + }, + { + "path": "4dfp/diff4dfp/diffRGB_4dfp.c", + "sha256": "e4d9e6fb0b4492249e574718718bfa69d2ac91689ea37b36c8c19f01739c91ae", + "language": "C", + "lines": 390, + "truncated": false, + "block": 1, + "row": 160 + }, + { + "path": "4dfp/diff4dfp/diff_4dfp.c", + "sha256": "db71e61fe2af8a45791cf2ac9d10c92d5a534823f6977ef68247754dc527ece8", + "language": "C", + "lines": 1119, + "truncated": false, + "block": 1, + "row": 197 + }, + { + "path": "4dfp/diff4dfp/dtensor.c", + "sha256": "a7eefd6716f568cd9a12f1f11668386f9a2f9766f438d13f5613805082f8ca81", + "language": "C", + "lines": 627, + "truncated": false, + "block": 1, + "row": 175 + }, + { + "path": "4dfp/diff4dfp/feat.c", + "sha256": "6597e56a5f1a420b5489b392606fd2d2919bc75657e7b739c334565134a45b59", + "language": "C", + "lines": 1222, + "truncated": false, + "block": 1, + "row": 198 + }, + { + "path": "4dfp/diff4dfp/fuzzy.c", + "sha256": "7b64a6f7adc2b38eede37a36f2960575070fa7b733a652ea527091e135918962", + "language": "C", + "lines": 579, + "truncated": false, + "block": 1, + "row": 162 + }, + { + "path": "4dfp/diff4dfp/get_dti_params.c", + "sha256": "603e71a961dab46a5ff563e0bb8e0aec37e08d77adbc917599efafae46d5a459", + "language": "C", + "lines": 102, + "truncated": false, + "block": 1, + "row": 49 + }, + { + "path": "4dfp/diff4dfp/knee.h", + "sha256": "e977374d90ea3abd0a160bb149607990c52b52ca58eed98c35060b4e4db5a9ac", + "language": "C/C++", + "lines": 190, + "truncated": false, + "block": 1, + "row": 414 + }, + { + "path": "4dfp/diff4dfp/morph.c", + "sha256": "a0e7028c03b357d5e9193fd1888b54e50814b834e8f19523dac501a18f1e194e", + "language": "C", + "lines": 1025, + "truncated": false, + "block": 1, + "row": 192 + }, + { + "path": "4dfp/diff4dfp/nonlinear.c", + "sha256": "79917d5445a58ba9f29dfa4d734df5cfddbd07dd3644a637af9496e68b03fcef", + "language": "C", + "lines": 868, + "truncated": false, + "block": 1, + "row": 196 + }, + { + "path": "4dfp/diff4dfp/t4tolin.c", + "sha256": "316e5ecbf9b25773fcb6eb04e238eefaddf2beea2e271718ef17d353acce0222", + "language": "C", + "lines": 70, + "truncated": false, + "block": 1, + "row": 36 + }, + { + "path": "4dfp/diff4dfp/whisker_4dfp.c", + "sha256": "1cb43bff5aef896ecaefc1de40706fb73f0d667bc824d8e84126099676b05b60", + "language": "C", + "lines": 336, + "truncated": false, + "block": 1, + "row": 144 + }, + { + "path": "4dfp/dwi_xalign_4dfp/dwi_cross_xalign3d_4dfp.c", + "sha256": "9c41488cc6ed36a53417d7906fa209026438fc6ba3a523b2224e252c5115bf56", + "language": "C", + "lines": 550, + "truncated": false, + "block": 1, + "row": 179 + }, + { + "path": "4dfp/dwi_xalign_4dfp/dwi_xalign3d_4dfp.c", + "sha256": "8294a42707c2906fbb5878053ccbdaab896cc8358083a4e28aa8aea705d241cd", + "language": "C", + "lines": 638, + "truncated": false, + "block": 1, + "row": 187 + }, + { + "path": "4dfp/ecat/ecat_header.c", + "sha256": "fa36f00ddc1a71a4ffcf60127ed7626a05643cf915aa762860d1fc7d2d0e75a3", + "language": "C", + "lines": 501, + "truncated": false, + "block": 1, + "row": 178 + }, + { + "path": "4dfp/ecat/ecat_header.h", + "sha256": "357bc11f4dc39aa33e9df64de91119bdfd8c205f9b85ff7a64e31070d58691a0", + "language": "C/C++", + "lines": 17, + "truncated": false, + "block": 1, + "row": 305 + }, + { + "path": "4dfp/ecat/ecatto4dfp.c", + "sha256": "375adef94923860cff0619d886e2ca0c4a0c3971c16562a4d152e52bc01c844d", + "language": "C", + "lines": 227, + "truncated": false, + "block": 1, + "row": 108 + }, + { + "path": "4dfp/flip_4dfp/cflip.c", + "sha256": "2ffac54b52373ea5b0b3d318c447307fe5f7dc0ab489f17658f3bb254af3003c", + "language": "C", + "lines": 80, + "truncated": false, + "block": 1, + "row": 31 + }, + { + "path": "4dfp/flip_4dfp/flip_4dfp.c", + "sha256": "a2c61b2dc10ce4e3e101acab85ba1d89d44b8e63ed3519d0ee245dd526e2c7f7", + "language": "C", + "lines": 146, + "truncated": false, + "block": 1, + "row": 70 + }, + { + "path": "4dfp/flip_4dfp/flip_4dfp.h", + "sha256": "57ef0cc68058a022872955708d2653b170d585f82d537538795979ec9c3db406", + "language": "C/C++", + "lines": 9, + "truncated": false, + "block": 1, + "row": 296 + }, + { + "path": "4dfp/frame_align/frame_align_4dfp.c", + "sha256": "0c4e956b13929cc556b4f8bf09523a2cea8517f76f93eeb534df8fe9c4d265b8", + "language": "C", + "lines": 274, + "truncated": false, + "block": 1, + "row": 129 + }, + { + "path": "4dfp/frame_align/rfft1d.c", + "sha256": "2137ba2674bf397aec969cdfc68d9576e6a363960b6e789eb04de116e0299367", + "language": "C", + "lines": 102, + "truncated": false, + "block": 1, + "row": 29 + }, + { + "path": "4dfp/frame_align/slice_sequence.c", + "sha256": "b352e7de41313a270d534d5422a33138ff8009c74a7f7be60979866696e3b65d", + "language": "C", + "lines": 28, + "truncated": false, + "block": 1, + "row": 7 + }, + { + "path": "4dfp/gauss_4dfp/cgauss3dd.c", + "sha256": "3d6c6eae567eba37de6d2e358fa8aa2eb10b3c254cda59008a5ed58c71c9321b", + "language": "C", + "lines": 98, + "truncated": false, + "block": 1, + "row": 46 + }, + { + "path": "4dfp/gauss_4dfp/gauss_4dfp.c", + "sha256": "f339403e3bf9fce3333ea059904e7c0927373545c0865b7a60e68a2a45f34cb0", + "language": "C", + "lines": 263, + "truncated": false, + "block": 1, + "row": 121 + }, + { + "path": "4dfp/gauss_4dfp/hsphere_4dfp.c", + "sha256": "85190b96135789d5218ab8cbfebb8cf89e93b6f1a42a5005e20a778d3bf663d2", + "language": "C", + "lines": 156, + "truncated": false, + "block": 1, + "row": 67 + }, + { + "path": "4dfp/imato4dfp2/unpack_4dfp.c", + "sha256": "d65e03c95c9d6434e5d2f80127ba99682f2cfd9a32613aae567c461b5ec8e953", + "language": "C", + "lines": 307, + "truncated": false, + "block": 1, + "row": 125 + }, + { + "path": "4dfp/img2msk_4dfp/img2msk_4dfp.c", + "sha256": "74912dfc64368668757c75254cfb6b23e6e2040769150fc4831d34640a96f6aa", + "language": "C", + "lines": 150, + "truncated": false, + "block": 1, + "row": 61 + }, + { + "path": "4dfp/img_hist_4dfp/fimg_mode.c", + "sha256": "6976471516d6a2c5cca6c7df78350c19c7bc7f6bfc70f26fd77b4408884e742c", + "language": "C", + "lines": 163, + "truncated": false, + "block": 1, + "row": 91 + }, + { + "path": "4dfp/img_hist_4dfp/img_hist_4dfp.c", + "sha256": "6ae99c2bde104f4d45632fab53653818a83998ebedc5542b4ebc786f67bb31a8", + "language": "C", + "lines": 452, + "truncated": false, + "block": 1, + "row": 164 + }, + { + "path": "4dfp/imgblur_4dfp/imgblur_4dfp.c", + "sha256": "55b1ce9639e1264cbc5d6c51956df78d2a9ff47a249d22bcdb3ca4e842656da6", + "language": "C", + "lines": 177, + "truncated": false, + "block": 1, + "row": 92 + }, + { + "path": "4dfp/imglin/dnormal.c", + "sha256": "c4890caa20846e907a7ddee9e8026e1c964ef4c3292d19ec7247a2e9e28eac54", + "language": "C", + "lines": 37, + "truncated": false, + "block": 1, + "row": 9 + }, + { + "path": "4dfp/imglin/imgsurf_4dfp.c", + "sha256": "be4fda3730998573184a3588d3b01be7ea6839477bd7b4af46681566311b0d65", + "language": "C", + "lines": 221, + "truncated": false, + "block": 1, + "row": 104 + }, + { + "path": "4dfp/imglin/stretch_out.c", + "sha256": "c4113f96277f0a4e63fe40c48ffc599cb8763a8e1ed3943f69afa666c3733ebc", + "language": "C", + "lines": 124, + "truncated": false, + "block": 1, + "row": 45 + }, + { + "path": "4dfp/imglin/t4_factor.c", + "sha256": "d08e3273a2a42de645a3e84dba87bb144324ae633f78c944292c9d4d4ba9443a", + "language": "C", + "lines": 115, + "truncated": false, + "block": 1, + "row": 50 + }, + { + "path": "4dfp/imglin/t4_ident.c", + "sha256": "20c536895932c028c23f25ec44b3f5cb2cc792e9c36f72bb2707b4a85c854744", + "language": "C", + "lines": 96, + "truncated": false, + "block": 1, + "row": 38 + }, + { + "path": "4dfp/imglin/t4_inv.c", + "sha256": "41027da8f3cdd6d790387b281be7a2d92a7589dfdc4c35ebfe2d691eb70d075e", + "language": "C", + "lines": 183, + "truncated": false, + "block": 1, + "row": 69 + }, + { + "path": "4dfp/imglin/t4_io.c", + "sha256": "1a3bd3a59dc1cbbd8226c4e8d6f7f2b73aad3c1c9e241aa546ae0a0aa311031d", + "language": "C", + "lines": 102, + "truncated": false, + "block": 1, + "row": 40 + }, + { + "path": "4dfp/imglin/t4_io.h", + "sha256": "6fa3097d3e4ea3797c26e30ed787f32ddf064ed6541c28ddc3efab672cef99ab", + "language": "C/C++", + "lines": 15, + "truncated": false, + "block": 1, + "row": 297 + }, + { + "path": "4dfp/imglin/t4_mul.c", + "sha256": "79a368a173c607b5d6217d3ee2a664c36c67806bf5200d094215cf4122c06a10", + "language": "C", + "lines": 187, + "truncated": false, + "block": 1, + "row": 79 + }, + { + "path": "4dfp/imglin/t4_opr.c", + "sha256": "38ba6b5a1923006c55eac149ec15e8b112eed8a1e71f9fc56018c86e6d5e6520", + "language": "C", + "lines": 265, + "truncated": false, + "block": 1, + "row": 112 + }, + { + "path": "4dfp/imglin/t4_pts.c", + "sha256": "0db0b773357a03d01e1cf8a3856597b5aa4710eae60f232f16d6c44552623c41", + "language": "C", + "lines": 136, + "truncated": false, + "block": 1, + "row": 52 + }, + { + "path": "4dfp/imglin/t4_resolve.c", + "sha256": "978e30d3396996cc4b732291c3a415472c6c80d8786da3b022429e68cf7af031", + "language": "C", + "lines": 300, + "truncated": false, + "block": 1, + "row": 130 + }, + { + "path": "4dfp/imglin/t4_sub.h", + "sha256": "c3d8c10a6a86dbd0d65407177be87a7562de53fbf874f7fc61b60ee75dbf18b1", + "language": "C/C++", + "lines": 11, + "truncated": false, + "block": 1, + "row": 293 + }, + { + "path": "4dfp/imglin/t4scale.c", + "sha256": "19c63f1b8551685558d324b78c3193d969b91071f67622f0699a8f9afafaf414", + "language": "C", + "lines": 29, + "truncated": false, + "block": 1, + "row": 8 + }, + { + "path": "4dfp/imgmax_4dfp/imgmax_4dfp.c", + "sha256": "dca204f004103ca3865e873535bcece56ea10f2a0a1d6d859398d033bd57e95c", + "language": "C", + "lines": 191, + "truncated": false, + "block": 1, + "row": 82 + }, + { + "path": "4dfp/imgreg_4dfp/imgreg_4dfp.c", + "sha256": "680c1b9d66ce4c9e85447660fe2f39890d89bedf36e5454c5c028532b938dd4b", + "language": "C", + "lines": 237, + "truncated": false, + "block": 1, + "row": 119 + }, + { + "path": "4dfp/interp_4dfp/bandpass_4dfp.c", + "sha256": "296007401a71dcba656784f28874d49b761c1de5b687f24d55c3ca066dc3d198", + "language": "C", + "lines": 390, + "truncated": false, + "block": 1, + "row": 161 + }, + { + "path": "4dfp/interp_4dfp/interp_4dfp.c", + "sha256": "f32653fa34fc8f73a38cee7de6185f6be6894bfdc9033cc8a17f2fff5a82c6c6", + "language": "C", + "lines": 260, + "truncated": false, + "block": 1, + "row": 124 + }, + { + "path": "4dfp/librms/cgauss3d.c", + "sha256": "7f1662fca67a17c2758380cdf48d51e58d42314ae0112c3c9a135d171811669e", + "language": "C", + "lines": 102, + "truncated": false, + "block": 1, + "row": 47 + }, + { + "path": "4dfp/librms/dgeigen.c", + "sha256": "69ebd66924fcdc73e79c33c49d803d53e5b68903bf35c6c6ebc694873206a3da", + "language": "C", + "lines": 79, + "truncated": false, + "block": 1, + "row": 43 + }, + { + "path": "4dfp/librms/dsvdcmp0.c", + "sha256": "e9d9455788dc0b80822350f824af6ad796350d9dea2aee2291dd681368170d3b", + "language": "C", + "lines": 331, + "truncated": false, + "block": 1, + "row": 122 + }, + { + "path": "4dfp/librms/fft_test.c", + "sha256": "57ed1d27b9354529f0a650097fee944e69e07afee5c5896058434b3fcbfdb926", + "language": "C", + "lines": 105, + "truncated": false, + "block": 1, + "row": 42 + }, + { + "path": "4dfp/librms/imag2mask.c", + "sha256": "79098055e973b99b2a7cdabd7e2b91e4acecfe45e1f7d89a8b894c5c9e5f5dfd", + "language": "C", + "lines": 47, + "truncated": false, + "block": 1, + "row": 24 + }, + { + "path": "4dfp/librms/img2lmask.c", + "sha256": "9787023a3b8f9ddfdb16babe30ecb8cb3b489a2a7d603b8f2cc9635decea4ec8", + "language": "C", + "lines": 42, + "truncated": false, + "block": 1, + "row": 20 + }, + { + "path": "4dfp/librms/img2lmask_test.c", + "sha256": "96e0eccdf50594a93873a32c53c534d77b5a77b2f074cf187d111360998e8e46", + "language": "C", + "lines": 45, + "truncated": false, + "block": 1, + "row": 13 + }, + { + "path": "4dfp/librms/librms.h", + "sha256": "697a375ea0ec053a02d0d4595a08e2a402832de098c8104a504e2c6b64490f2f", + "language": "C/C++", + "lines": 114, + "truncated": false, + "block": 1, + "row": 387 + }, + { + "path": "4dfp/maskimg_4dfp/maskimg_4dfp.c", + "sha256": "8cb35f071731979b4567df7e6859c6368d019dede6f7f572318fc6652793d184", + "language": "C", + "lines": 251, + "truncated": false, + "block": 1, + "row": 118 + }, + { + "path": "4dfp/mpetto4dfp/mpetto4dfp.c", + "sha256": "3482019d1fe80da7026099a673d1398a0b9cd770e98dc7698a4a419e2bd3875f", + "language": "C", + "lines": 656, + "truncated": false, + "block": 1, + "row": 180 + }, + { + "path": "4dfp/mprtir/2Dhist.c", + "sha256": "fdce5199351bfa9186196bee255d8c2c4903fb9c7cb0fa1bd8961bddd33cb91b", + "language": "C", + "lines": 361, + "truncated": false, + "block": 1, + "row": 152 + }, + { + "path": "4dfp/mprtir/partitiond_gfc_4dfp.c", + "sha256": "9c31f3e1cff9f4854ee40741a5e7c78960433dfb8461dc19f33590040d209442", + "language": "C", + "lines": 726, + "truncated": false, + "block": 1, + "row": 188 + }, + { + "path": "4dfp/nifti_4dfp/4dfp-format.c", + "sha256": "e453d4552bf9d17599a07900322bbf185cd1eefea2b010c4f5f3f8c867fc124a", + "language": "C", + "lines": 732, + "truncated": false, + "block": 1, + "row": 186 + }, + { + "path": "4dfp/nifti_4dfp/4dfp-format.h", + "sha256": "defe87da8e9cd07fe38540e1f2d9992b886f9a8429cd6653285f2df72a526c69", + "language": "C/C++", + "lines": 26, + "truncated": false, + "block": 1, + "row": 311 + }, + { + "path": "4dfp/nifti_4dfp/common-format.c", + "sha256": "021d7503f5b4c42ba7a21cf6c87bf49bc0ee5e8dfacef5759749921d8c34bbd5", + "language": "C", + "lines": 156, + "truncated": false, + "block": 1, + "row": 64 + }, + { + "path": "4dfp/nifti_4dfp/common-format.h", + "sha256": "a0c36562fc7dfa2cdfeffb9d8bd6ab0bbcc01afedfa1b6df8aa26aa22aa39f78", + "language": "C/C++", + "lines": 112, + "truncated": false, + "block": 1, + "row": 385 + }, + { + "path": "4dfp/nifti_4dfp/mystdint.h", + "sha256": "a5bf1be6eeb061b6ebefbc05588ff19dcc6d1fad66d569d84cd299de84521c55", + "language": "C/C++", + "lines": 49, + "truncated": false, + "block": 1, + "row": 320 + }, + { + "path": "4dfp/nifti_4dfp/nifti-format.c", + "sha256": "eb19dd4f3846789e3da644aac4da0571964b7765c0297370c1a590a759242f9f", + "language": "C", + "lines": 956, + "truncated": false, + "block": 1, + "row": 194 + }, + { + "path": "4dfp/nifti_4dfp/nifti-format.h", + "sha256": "b03c611cbdfd52813a5112730ef346488804451e4e5ec0cfed79219c879bae60", + "language": "C/C++", + "lines": 40, + "truncated": false, + "block": 1, + "row": 335 + }, + { + "path": "4dfp/nifti_4dfp/nifti1.h", + "sha256": "b47cb0b6f0fd8ef4238ca226a0d04a6745b1d37e8ef5ce645a5c1bc0c6d0bb74", + "language": "C/C++", + "lines": 1521, + "truncated": false, + "block": 1, + "row": 437 + }, + { + "path": "4dfp/nifti_4dfp/nifti_4dfp.c", + "sha256": "248eca0009ba9e4ee86a9e6bafe8895e98d0c39d2f4d2e37a0f8fb10fd469393", + "language": "C", + "lines": 145, + "truncated": false, + "block": 1, + "row": 80 + }, + { + "path": "4dfp/nifti_4dfp/parse_common.c", + "sha256": "95bab458b18b18c408d2a06ad76617837c35321093219df18cb843eae2edf8a8", + "language": "C", + "lines": 11, + "truncated": false, + "block": 1, + "row": 2 + }, + { + "path": "4dfp/nifti_4dfp/parse_common.h", + "sha256": "bfbfebdccb5c6b5f268240af341f028b1d2306f205633ebc8a626d048c2ab05d", + "language": "C/C++", + "lines": 3, + "truncated": false, + "block": 1, + "row": 288 + }, + { + "path": "4dfp/nifti_4dfp/split.c", + "sha256": "2417a336137843dc93d8fe9ecfe5912098cb6d31107181f6d97f899d9bbad7b8", + "language": "C", + "lines": 41, + "truncated": false, + "block": 1, + "row": 15 + }, + { + "path": "4dfp/nifti_4dfp/transform.c", + "sha256": "460aa16f5762de8a588396070e0ae153d10089c953cdc77efa64ae839651acef", + "language": "C", + "lines": 354, + "truncated": false, + "block": 1, + "row": 127 + }, + { + "path": "4dfp/nifti_4dfp/transform.h", + "sha256": "92bf1169bd4aea452c1142067033d28a8e9e4798ad65bd008af9cae2c50cb09b", + "language": "C/C++", + "lines": 39, + "truncated": false, + "block": 1, + "row": 333 + }, + { + "path": "4dfp/nonlin/iic.c", + "sha256": "01d0d1a7e7b3ba81bf4817a3a30c3e4f3f77c0bc596012d91abbc151df48fee3", + "language": "C", + "lines": 482, + "truncated": false, + "block": 1, + "row": 174 + }, + { + "path": "4dfp/nonlin/lud.c", + "sha256": "6af1322edd5371d1ff8e4e3c2eaaf85b696a9e51108e4e8e19b574a6283b778a", + "language": "C", + "lines": 98, + "truncated": false, + "block": 1, + "row": 33 + }, + { + "path": "4dfp/nonlin/morphc_4dfp.c", + "sha256": "d8f1ae7283094ce7349c21609a698361b1a473f50c89b7c8da2f2664b1fdd870", + "language": "C", + "lines": 620, + "truncated": false, + "block": 1, + "row": 191 + }, + { + "path": "4dfp/nonlin/piic.c", + "sha256": "4432cdfd956cdf2c162e759c08c1aa76efc1996acaf701aa039f9ce919aafcb0", + "language": "C", + "lines": 158, + "truncated": false, + "block": 1, + "row": 102 + }, + { + "path": "4dfp/normalize_4dfp/img2hist.c", + "sha256": "3496542d1bc3be06a6bae474055de8f2b2963b8a68bf0aafb3d1f38be28f820f", + "language": "C", + "lines": 61, + "truncated": false, + "block": 1, + "row": 28 + }, + { + "path": "4dfp/normalize_4dfp/normalize_4dfp.c", + "sha256": "2e3950278d87e3814951cedeeb50d315fae5eeca2c37e33b021d384831a79a71", + "language": "C", + "lines": 368, + "truncated": false, + "block": 1, + "row": 155 + }, + { + "path": "4dfp/paste_4dfp/paste_4dfp.c", + "sha256": "2a51d2b45f5baf0b7c54e310c46fedb6f5acb161246510fe23a4877b076bd9d6", + "language": "C", + "lines": 309, + "truncated": false, + "block": 1, + "row": 131 + }, + { + "path": "4dfp/peak_4dfp/burn_sphere_4dfp.c", + "sha256": "7e97cc778ea344e613c04580d2319b139b70fd8d47278f32003bd098e4c6cb4b", + "language": "C", + "lines": 347, + "truncated": false, + "block": 1, + "row": 145 + }, + { + "path": "4dfp/peak_4dfp/index2atl.c", + "sha256": "f730f1b120fac68b2922a5949970f8ccd4be2db21c1589fb50bc39cd5ac5b33e", + "language": "C", + "lines": 141, + "truncated": false, + "block": 1, + "row": 73 + }, + { + "path": "4dfp/peak_4dfp/peak_4dfp.c", + "sha256": "a59bd3776c96091485992929eb62d8be9e7930717366384dacd43a532adcbb7c", + "language": "C", + "lines": 625, + "truncated": false, + "block": 1, + "row": 181 + }, + { + "path": "4dfp/peak_4dfp/read_4dfp.c", + "sha256": "e522ec38937c660e324d2a191e362add2eb86d7ff39e9ee30c3329730dd1a4b0", + "language": "C", + "lines": 125, + "truncated": false, + "block": 1, + "row": 58 + }, + { + "path": "4dfp/permute/permute.c", + "sha256": "fdea5ea5b7ce5fbd35b96ae9f48cc50f306f50f9c8d87eb2af2aacdcea7192e0", + "language": "C", + "lines": 73, + "truncated": false, + "block": 1, + "row": 23 + }, + { + "path": "4dfp/permute/permuteN.c", + "sha256": "f01f23522c0c05312bd60ee58784e9afe53eeb9196abd6f11d06bca0098dd68b", + "language": "C", + "lines": 63, + "truncated": false, + "block": 1, + "row": 25 + }, + { + "path": "4dfp/qnt_4dfp/qnt_4dfp.c", + "sha256": "b8572a63b9133617d9ce433a9a45990a3ea49b43c30b7297879a872a949ebd33", + "language": "C", + "lines": 342, + "truncated": false, + "block": 1, + "row": 141 + }, + { + "path": "4dfp/qnt_4dfp/qntm_4dfp.c", + "sha256": "39698f65073833c978c298fcd5f765fa72646541bae5afa1c41612c2937b2a4f", + "language": "C", + "lines": 309, + "truncated": false, + "block": 1, + "row": 134 + }, + { + "path": "4dfp/qnt_4dfp/qntv_4dfp.c", + "sha256": "20baafa4e7484ab5c4517c0969c6d4a4ed1aa7ca3862631126b27739b6ca74d2", + "language": "C", + "lines": 491, + "truncated": false, + "block": 1, + "row": 173 + }, + { + "path": "4dfp/qnt_4dfp/qntw_4dfp.c", + "sha256": "ac5b964dd868bee84bce0036c7cb577b12ed9de553c45f39bb8c109b557c7404", + "language": "C", + "lines": 241, + "truncated": false, + "block": 1, + "row": 115 + }, + { + "path": "4dfp/reindex_4dfp/reindex_4dfp.c", + "sha256": "a2906d0c7ac182bc6bc6d4a4620e4336d85dd5f725e3f8c71d74a57707b98535", + "language": "C", + "lines": 230, + "truncated": false, + "block": 1, + "row": 114 + }, + { + "path": "4dfp/rmspike_4dfp/rmspike_4dfp.c", + "sha256": "9e9ee3c57733441354b13d776e9d8f14db9a0710d5edb6b6adc698641401516e", + "language": "C", + "lines": 300, + "truncated": false, + "block": 1, + "row": 132 + }, + { + "path": "4dfp/scale_4dfp/scale_4dfp.c", + "sha256": "3105ca19048e41b17f52cd94c529d113222542ea3df44fb7cdf3839e26f8efe6", + "language": "C", + "lines": 229, + "truncated": false, + "block": 1, + "row": 111 + }, + { + "path": "4dfp/sqrt_4dfp/bertulani_betai.c", + "sha256": "52c83ebbe9d6c80c0e7402d3433e6d573c51b2a9f966250966df409cb2f96a86", + "language": "C", + "lines": 134, + "truncated": false, + "block": 1, + "row": 57 + }, + { + "path": "4dfp/sqrt_4dfp/rho2z_4dfp.c", + "sha256": "6bf7afcc0d05331361b1361dca6bb342b269df1467f78f2d2954d101bdd78072", + "language": "C", + "lines": 194, + "truncated": false, + "block": 1, + "row": 88 + }, + { + "path": "4dfp/sqrt_4dfp/sqrt_4dfp.c", + "sha256": "cd132a7a8cb3571023410632fafbce353d2ce5b90fda358b0b5582f29fa94895", + "language": "C", + "lines": 170, + "truncated": false, + "block": 1, + "row": 78 + }, + { + "path": "4dfp/sqrt_4dfp/statsub.c", + "sha256": "b62bb3d56424e9cef92fe82d741d6187222cf0406bd8c4f7a3eff227c77dee6a", + "language": "C", + "lines": 211, + "truncated": false, + "block": 1, + "row": 96 + }, + { + "path": "4dfp/sqrt_4dfp/t2z_4dfp.c", + "sha256": "89f66fb5808973f7199c80533aba7f9657750c5334d19190d976605b26e1f542", + "language": "C", + "lines": 232, + "truncated": false, + "block": 1, + "row": 110 + }, + { + "path": "4dfp/sqrt_4dfp/z2logp_4dfp.c", + "sha256": "f162f7a105eaea8613416c5a465aadfa8212eb5b72eb541a9d66001a15898593", + "language": "C", + "lines": 196, + "truncated": false, + "block": 1, + "row": 94 + }, + { + "path": "4dfp/sum_pet_4dfp/sum_pet_4dfp.c", + "sha256": "743bf9a155476d306a3753c4f10c1ed0dd8c6bc572dde7d3f741fc71f401a31e", + "language": "C", + "lines": 332, + "truncated": false, + "block": 1, + "row": 138 + }, + { + "path": "4dfp/t4_actmapf_4dfp/t4_xr3d_4dfp.c", + "sha256": "e802e5c716eec6b68f8d987531c6586e005bafd3c11773e3450a3a35b6adefc6", + "language": "C", + "lines": 394, + "truncated": false, + "block": 1, + "row": 157 + }, + { + "path": "4dfp/t4imgs_4dfp/NaN_test.c", + "sha256": "89d88de70f45a7ed241dfc399661459ad690ca22411bf837d51b5b56b3487748", + "language": "C", + "lines": 39, + "truncated": false, + "block": 1, + "row": 10 + }, + { + "path": "4dfp/t4imgs_4dfp/cvrtflip.c", + "sha256": "104d6de81c5eb723e44cac63028834617817064607b24827229a1a6766366302", + "language": "C", + "lines": 32, + "truncated": false, + "block": 1, + "row": 12 + }, + { + "path": "4dfp/t4imgs_4dfp/t4imgs_4dfp.c", + "sha256": "f3f992cec61ead3821b17792dbffc3681ea404467d1701ce1c88c1914bc2a071", + "language": "C", + "lines": 667, + "truncated": false, + "block": 1, + "row": 185 + }, + { + "path": "4dfp/var_4dfp/dvar_4dfp.c", + "sha256": "7a5a8bb6e36c915fae595bfee8716445ed2bf9d8f061f9d9e7b225af1fd3b8c6", + "language": "C", + "lines": 212, + "truncated": false, + "block": 1, + "row": 107 + }, + { + "path": "4dfp/var_4dfp/var_4dfp.c", + "sha256": "6433f490ea5a04fd8d46b0929e3c80d6c5ede92ff7cdc3a0f3a9ff63a854daa5", + "language": "C", + "lines": 444, + "truncated": false, + "block": 1, + "row": 163 + }, + { + "path": "4dfp/wrpsmg_4dfp/wrpsmg_4dfp.c", + "sha256": "a49a2292cce1ce1c8307f7bd9768fa0ec7b739b90eea413cdd9ea0450e0ec730", + "language": "C", + "lines": 606, + "truncated": false, + "block": 1, + "row": 177 + }, + { + "path": "4dfp/zero_lt_4dfp/zero_gt_4dfp.c", + "sha256": "5ff57c80a41eb7707abb87e7a36cc90196969c49ee6aed68d2b6d175629cde89", + "language": "C", + "lines": 150, + "truncated": false, + "block": 1, + "row": 63 + }, + { + "path": "4dfp/zero_lt_4dfp/zero_gtlt_4dfp.c", + "sha256": "b26daa5c1a2b258c30f76591d55b142585f8a1ebbfb97d8c5caf205f5b2a2ad8", + "language": "C", + "lines": 155, + "truncated": false, + "block": 1, + "row": 66 + }, + { + "path": "4dfp/zero_lt_4dfp/zero_lt_4dfp.c", + "sha256": "2d3f18948f864596b50cdee25814956173dbf8986c5f7dbde91dfd11ee5ba226", + "language": "C", + "lines": 162, + "truncated": false, + "block": 1, + "row": 74 + }, + { + "path": "4dfp/zero_lt_4dfp/zero_ltgt_4dfp.c", + "sha256": "59a347a0ac3e8573ee94c7a30f5c10c292f436b1be51386889ed9bf3ae5c26c2", + "language": "C", + "lines": 155, + "truncated": false, + "block": 1, + "row": 65 + }, + { + "path": "LICENSE", + "sha256": "d403fc30fde75dbd51fcef2800ed8e58884e551358f983f07b25f3fc0b47190e", + "language": "License", + "lines": 24, + "truncated": false, + "block": 1, + "row": 2192 + }, + { + "path": "README.md", + "sha256": "127d1719c78fc7c874e494ac3b702a4e06474327bae8f35acd21d6066ea85418", + "language": "Text", + "lines": 47, + "truncated": false, + "block": 1, + "row": 11815 + }, + { + "path": "matlabcode/Getifh.m", + "sha256": "2ccf011de24db8d0e7e501668391074392fff4a306b3085a57974ded49740948", + "language": "MATLAB", + "lines": 96, + "truncated": false, + "block": 1, + "row": 3466 + }, + { + "path": "matlabcode/Writeifh.m", + "sha256": "2597b4fe43e49d4ede3eb5de61735382eba3bd162f707be40feb8ea559173ce2", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 1, + "row": 2949 + }, + { + "path": "matlabcode/emab.m", + "sha256": "d6b1897107d2d54f9ee43248d0b41307e23ec505a2323a252f45a57664f27681", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 1, + "row": 2800 + }, + { + "path": "matlabcode/emabv1.m", + "sha256": "4864c450687e46599eb7275a932d044e52a3d264baef26c337089911205b00cf", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 1, + "row": 2646 + }, + { + "path": "matlabcode/emart.m", + "sha256": "c5c4706b5bd06f8f537094d799de81a6347f07c7ac86ab8e371e51466c75aba8", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 1, + "row": 2773 + }, + { + "path": "matlabcode/emart2.m", + "sha256": "6d0784d17370a1a5f94c0bb706f8240807d8e1c0c259f611d19504d08de18126", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 1, + "row": 2913 + }, + { + "path": "matlabcode/emartv1.m", + "sha256": "84d4cf9f863fac29f8f1dd5ba4600958cdf340bdc0b292a43b5abd8eb8812a23", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 1, + "row": 2681 + }, + { + "path": "matlabcode/findtroisize.m", + "sha256": "ccaa012df56ca35463de60362f00839b4e680ad49440876c41376d56763b12af", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 1, + "row": 2371 + }, + { + "path": "matlabcode/read4dfp.m", + "sha256": "500df8e6ca8f50c5b64a7a488e8fb19d0114dec6c5a13b89598bbd2c7657ca05", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 1, + "row": 2930 + }, + { + "path": "matlabcode/write4dfp.m", + "sha256": "4ed11fe26f5ca9d9c43ae0ca26f379f3d77a62239fbda80cf85b3b26daeb70bc", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 1, + "row": 2855 + }, + { + "path": "scripts/pettb.pl", + "sha256": "0d693a3b6d89ae798bd4a58c95e9ae17737485aae90979554970295b643f604a", + "language": "Perl", + "lines": 79, + "truncated": false, + "block": 1, + "row": 4712 + }, + { + "path": "src/ANALYZE.h", + "sha256": "36075e00348851662c748a8693d7ed3f32c68b4199d6d830b2dd5afae80d2be4", + "language": "C/C++", + "lines": 69, + "truncated": false, + "block": 1, + "row": 362 + }, + { + "path": "src/Getifh.c", + "sha256": "746af5a7e438da684fdbaccbc6cf9704e41f7d79a640442ba7cc1eba088c5823", + "language": "C", + "lines": 316, + "truncated": false, + "block": 1, + "row": 148 + }, + { + "path": "src/Getifh.h", + "sha256": "ad1f2cc4647af7b205b9ad99c5e79a57ee69c3db3427f427946cf6c0e5a2c642", + "language": "C/C++", + "lines": 46, + "truncated": false, + "block": 1, + "row": 366 + }, + { + "path": "src/PreprocessRSFtest2.c", + "sha256": "2dd53ce8109917091526704e4764a96020bf10e3904e5fca41d60d7b3a3fd08a", + "language": "C", + "lines": 44, + "truncated": false, + "block": 1, + "row": 17 + }, + { + "path": "src/RSF.c", + "sha256": "2cc711a4c9ef9edb237f23b14fb1789a89b7de457c0545878fc1a964845e4afd", + "language": "C", + "lines": 793, + "truncated": false, + "block": 1, + "row": 190 + }, + { + "path": "src/RSF.h", + "sha256": "7525b42adddcefd0c76963636034d6253fcc2072a79ee0fdc5b03d29a2b1027f", + "language": "C/C++", + "lines": 47, + "truncated": false, + "block": 1, + "row": 348 + }, + { + "path": "src/calrsfmat.c", + "sha256": "a25b53a5de0b6d78a065dccae0e6a1b0379f9dd5f5894763d0f43ba5f1fc5b6c", + "language": "C", + "lines": 59, + "truncated": false, + "block": 1, + "row": 18 + }, + { + "path": "src/cgauss3d.c", + "sha256": "f909d46be8a3acf498c1234a3086df01966c855d1ab278fc395ce248fd981763", + "language": "C", + "lines": 105, + "truncated": false, + "block": 1, + "row": 51 + }, + { + "path": "src/endianio.c", + "sha256": "2f90a192d26cdb02060b01fe67f2ac001c5757013a3272c1b045b64db9a131b4", + "language": "C", + "lines": 343, + "truncated": false, + "block": 1, + "row": 142 + }, + { + "path": "src/endianio.h", + "sha256": "ec4aad00388dbb524828f42164cb9df8c9423160b54964baee3665be7738814d", + "language": "C/C++", + "lines": 58, + "truncated": false, + "block": 1, + "row": 390 + }, + { + "path": "src/fs2brain.c", + "sha256": "b1db222a6d9f445663f25f1c887189b367c535787d7b717b19c742d27a2e94d5", + "language": "C", + "lines": 106, + "truncated": false, + "block": 1, + "row": 56 + }, + { + "path": "src/ifh.h", + "sha256": "7d8503e41b3d6229e9252d43dfa61a50fe0903b3fb230b7b37afed2583199e63", + "language": "C/C++", + "lines": 53, + "truncated": false, + "block": 1, + "row": 361 + }, + { + "path": "src/librms.h", + "sha256": "be1da2b4e61c8fdaed4e783bf24383b4a878eed5f6893e4d69e8595892fb5484", + "language": "C/C++", + "lines": 117, + "truncated": false, + "block": 1, + "row": 389 + }, + { + "path": "src/loganREF.c", + "sha256": "2be6fcbf722c7b87f1c81fa8eed9bc65e98f42b8aa08be61dec9a39f1a472077", + "language": "C", + "lines": 87, + "truncated": false, + "block": 1, + "row": 22 + }, + { + "path": "src/loganREFROI.c", + "sha256": "625d9dc443eddf90c38be80c46c8d3a19b14abdd6d4afbcc6e95d6cd5264aadd", + "language": "C", + "lines": 74, + "truncated": false, + "block": 1, + "row": 35 + }, + { + "path": "src/nrutil.c", + "sha256": "6de28bfc1bfac85bdfe3178ac628d60dac6aaaab2323cfefae6318715b891c5c", + "language": "C", + "lines": 67, + "truncated": false, + "block": 1, + "row": 19 + }, + { + "path": "src/nrutil.h", + "sha256": "e7808ca20c52422fcdec4667e82a492eb62dc853a2b876abfc7cf5ff8897b430", + "language": "C/C++", + "lines": 101, + "truncated": false, + "block": 1, + "row": 386 + }, + { + "path": "src/rec.h", + "sha256": "3379d508f18d68372cc36ec13c3a69ad4d4eef4024fbd3883f27382f0097a5ef", + "language": "C/C++", + "lines": 36, + "truncated": false, + "block": 1, + "row": 344 + }, + { + "path": "src/roieval2.c", + "sha256": "1e5591b0efbcdeb4a72414c636454dcc8e5bb5c7dbfc95e5bd172318942c2b07", + "language": "C", + "lines": 71, + "truncated": false, + "block": 1, + "row": 30 + }, + { + "path": "src/roieval3.c", + "sha256": "3731f4c8795afbc6b0f60d7f4e3d231842649faeda4070b8622793e311aa6e48", + "language": "C", + "lines": 73, + "truncated": false, + "block": 1, + "row": 34 + }, + { + "path": "src/rsfroieval2.c", + "sha256": "dc31ade666c49fd5d4ec5bc34211c118bcda9a130a7b3738f1b88888876ff6eb", + "language": "C", + "lines": 95, + "truncated": false, + "block": 1, + "row": 44 + } + ] +} \ No newline at end of file diff --git a/manifests/13/github.com__zhangwy49__multi-task-amp-discriminator-based-on-multi-scale-feature-fusion-and-amp-generator-guided-by-mic.json b/manifests/13/github.com__zhangwy49__multi-task-amp-discriminator-based-on-multi-scale-feature-fusion-and-amp-generator-guided-by-mic.json new file mode 100644 index 0000000000000000000000000000000000000000..5197fd484065d4f6a3786121000b47e10792cef3 --- /dev/null +++ b/manifests/13/github.com__zhangwy49__multi-task-amp-discriminator-based-on-multi-scale-feature-fusion-and-amp-generator-guided-by-mic.json @@ -0,0 +1,291 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/zhangwy49/multi-task-amp-discriminator-based-on-multi-scale-feature-fusion-and-amp-generator-guided-by-mic", + "url": "https://github.com/zhangwy49/Multi-Task-AMP-Discriminator-based-on-Multi-Scale-Feature-Fusion-and-AMP-Generator-Guided-by-MIC", + "host": "github.com", + "commit": "1c9879d4ed6b1455a8bb01a2c931f581c89354ad", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "AMP-Forge/scripts/configs/rnn_template.py", + "sha256": "ed43db48d3c259dfe1f1769acb69466393402d86a180cb17510db8ad9bfb9c62", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 1, + "row": 6067 + }, + { + "path": "AMP-Forge/scripts/generate.py", + "sha256": "e43aff325714a9921ca013b26d078e6353683c6af280bd5afec0f762b22d1d1c", + "language": "Python", + "lines": 392, + "truncated": false, + "block": 1, + "row": 9022 + }, + { + "path": "AMP-Forge/scripts/train.py", + "sha256": "7bb449f58d0313b5d605ac8f73401f585cab4141bebb4fe6095afee37f3b63b1", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 1, + "row": 7299 + }, + { + "path": "AMP-Forge/src/common/constants.py", + "sha256": "60604b6d6991a37b02f2e5bda4355b1f23fefd8ea77ebd81528c454e1f09d23b", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 1, + "row": 6114 + }, + { + "path": "AMP-Forge/src/common/utils.py", + "sha256": "d6354488590185d83cca2bbd1b8089ce15cbcef4e38cd1fbaa654ee70b8163e0", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 1, + "row": 6742 + }, + { + "path": "AMP-Forge/src/dataio/proteins.py", + "sha256": "653430d0272c6c88b7e4de5e1feccc7676592a132f8776b62a49085ff9f05020", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 1, + "row": 6787 + }, + { + "path": "AMP-Forge/src/models/__init__.py", + "sha256": "83292417c79744d99d3e27177ec97043c8061b7200d69b2b1508ab06b5460505", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 1, + "row": 5063 + }, + { + "path": "AMP-Forge/src/models/base.py", + "sha256": "3691357d6acfad6aa6b70925f92e23fd87b1302a6c08d1953f07f0ac599ee4ea", + "language": "Python", + "lines": 321, + "truncated": false, + "block": 1, + "row": 8822 + }, + { + "path": "AMP-Forge/src/models/modules/__init__.py", + "sha256": "4fb311d7e3454039de57e7cadfe79f5373ad248ebc8d46968ac06260456d30ce", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5310 + }, + { + "path": "AMP-Forge/src/models/modules/components.py", + "sha256": "68c9209a84184721ce2d8bb8304fd3f8c346e73ad8849f1776eb5730a797a196", + "language": "Python", + "lines": 308, + "truncated": false, + "block": 1, + "row": 8653 + }, + { + "path": "AMP-Forge/src/models/modules/controller.py", + "sha256": "88b17c0fc612240caf84f100e7c2dbcaa16131e74f17ae996bf0449d123d7651", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 1, + "row": 6265 + }, + { + "path": "AMP-Forge/src/models/modules/decoder.py", + "sha256": "876ca4560dd3a4672b572f8837d2895738115e4ba41167e043ff27163a2150f1", + "language": "Python", + "lines": 162, + "truncated": false, + "block": 1, + "row": 7865 + }, + { + "path": "AMP-Forge/src/models/modules/encoder.py", + "sha256": "91d87ec5dc10533338933e9e4b92aca64024ec888d997f6810e2c32537f616be", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 1, + "row": 6539 + }, + { + "path": "AMP-Forge/src/models/modules/predictor.py", + "sha256": "7c70c5e3ae361fd19ee44f9d59e4ac7f445c9d8d9769f7258e3d98bc8927b28e", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 1, + "row": 5431 + }, + { + "path": "AMP-Forge/src/models/train_helper.py", + "sha256": "7c4e2730607d5f931f612285244ae9355a2a448a2b7f947e06b68f335b5c6fb7", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 1, + "row": 5462 + }, + { + "path": "AMP-Forge/src/models/vae.py", + "sha256": "4781120e24efc8fcfe1dc4fd6898848fead08321bee7d07f89bee3194c77d376", + "language": "Python", + "lines": 422, + "truncated": false, + "block": 1, + "row": 9146 + }, + { + "path": "AMP-Forge/src/models/vae_module.py", + "sha256": "d1160c131057c205e4df51c00e31937137acc292a6ed81c0e83045863c7998c5", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 1, + "row": 7372 + }, + { + "path": "AMP-Hunter/config.py", + "sha256": "8b4793d2c0a4c40a98ec7094bbce74bb7e513d6a41d727ab08e075fdc38085bd", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5218 + }, + { + "path": "AMP-Hunter/datasets.py", + "sha256": "761dd2668263e4b0ec5dee83a5a09f2e8578f992b47e5ba9906e93ed6b42a7d7", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 1, + "row": 6569 + }, + { + "path": "AMP-Hunter/get_embedding/discriminate.py", + "sha256": "2a32b61948c77de1557c3a12f22218be8a14c7141b9acbb9f2018412c1d5cf1b", + "language": "Python", + "lines": 221, + "truncated": false, + "block": 1, + "row": 8160 + }, + { + "path": "AMP-Hunter/get_embedding/get_CNN_embedding.py", + "sha256": "6d6d39e5b079d691290bde4bee4ae699ac9c72381d0a50dbbcce4d92408fb2f7", + "language": "Python", + "lines": 146, + "truncated": false, + "block": 1, + "row": 7328 + }, + { + "path": "AMP-Hunter/get_embedding/get_NCGCN_embedding.py", + "sha256": "c3e0d59f08f3e10c37f3fe7099ecaca5a8d16e831390aff4e72a3a453561bd29", + "language": "Python", + "lines": 307, + "truncated": false, + "block": 1, + "row": 8525 + }, + { + "path": "AMP-Hunter/get_embedding/oracle.py", + "sha256": "d4a46bc4320abbac66750b66aacd5e64fd8cd4555b45848ee9f72654f37b257d", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 1, + "row": 6935 + }, + { + "path": "AMP-Hunter/get_embedding/otherModels5_2Output.py", + "sha256": "b1a9186d88c7337d98f289811332e11bbb4fe75b83e0bca4a83011c87d6cf8f9", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 1, + "row": 6103 + }, + { + "path": "AMP-Hunter/get_embedding/otherModelsRegression.py", + "sha256": "079ffaee38b16e35ec521ed741a2687e63b466eff84640a01f355d009d9bb743", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 1, + "row": 6358 + }, + { + "path": "AMP-Hunter/graph_process/calculate_similarity_matrix.py", + "sha256": "4e687e61668f201fb789dd55d89b810b6b0aa69afa5ec30a25594e08d8cf5efc", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 1, + "row": 7942 + }, + { + "path": "AMP-Hunter/graph_process/get_feature_pretrain.py", + "sha256": "3d0a7fec674c0972e9d42c7ff385925565bcd205a9b66289523b1b900de5d280", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 1, + "row": 6826 + }, + { + "path": "AMP-Hunter/models/NCGCN.py", + "sha256": "a58794f8c40a12e0cf8471693e49a0facc9bcc6e4b74f33696c3d9f7820da1dd", + "language": "Python", + "lines": 130, + "truncated": false, + "block": 1, + "row": 7359 + }, + { + "path": "AMP-Hunter/models/__init__.py", + "sha256": "5130262ed842ea2d40b3bd099e65ae3fc00f843fabe3b5a33d6076738dc9f7a3", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4978 + }, + { + "path": "LICENSE", + "sha256": "c71d239df91726fc519c6eb72d318ec65820627232b2f796219e87dcf35d0ab4", + "language": "License", + "lines": 201, + "truncated": false, + "block": 1, + "row": 2216 + }, + { + "path": "README.md", + "sha256": "a80a8a28e0bca01313226c22d8b41e61f96fe6e33680c6527a2bdab6500a2833", + "language": "Text", + "lines": 93, + "truncated": false, + "block": 1, + "row": 11884 + } + ] +} \ No newline at end of file diff --git a/manifests/14/zenodo__20543385.json b/manifests/14/zenodo__20543385.json new file mode 100644 index 0000000000000000000000000000000000000000..15c4c4fc94a4e8a749c4650ebe75bea2c53accea --- /dev/null +++ b/manifests/14/zenodo__20543385.json @@ -0,0 +1,381 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:20543385", + "url": "https://doi.org/10.5281/zenodo.20543385", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "code.zip/code/RSA/1a - event and syntactic encoding - rsa multiple regression - single elec differences - no CV - just SP ts.R", + "sha256": "f792b7520f55353faa410cd17513ea4bbe346cabb060f1bb02a0de8b09296da9", + "language": "R", + "lines": 397, + "truncated": false, + "block": 2, + "row": 2354 + }, + { + "path": "code.zip/code/RSA/1b - shuffled data RSA ts.R", + "sha256": "d6392fc42bcfaa0cca1e2da2d8aa165959af99315106c9b593ecbf12552a1bb0", + "language": "R", + "lines": 391, + "truncated": false, + "block": 2, + "row": 2351 + }, + { + "path": "code.zip/code/RSA/1c - get zs from shuffle distribution and adjust.R", + "sha256": "1f8e3b6890b859f328153f9b79fb29619be0d562510608a8b8930ce84d130844", + "language": "R", + "lines": 525, + "truncated": false, + "block": 2, + "row": 2356 + }, + { + "path": "code.zip/code/RSA/1e - nmf.R", + "sha256": "6d5b4ff856a6e842c9ffc267ec0cf59d961f571341f48cd237059edd8b749bcd", + "language": "R", + "lines": 681, + "truncated": false, + "block": 2, + "row": 2370 + }, + { + "path": "code.zip/code/RSA/1f - shuffled data nmf.R", + "sha256": "c724c3ec036f0eff72dce8ae44f680069de5e141d5f2f7d49899cc6cac21f33e", + "language": "R", + "lines": 403, + "truncated": false, + "block": 2, + "row": 2352 + }, + { + "path": "code.zip/code/RSA/1g - nmf stats - real vs. shuffled data clusters - max.R", + "sha256": "c71680e921ce3d40e8455cc155513baa88f7ca086a2c64f673a564bc508a9c3d", + "language": "R", + "lines": 617, + "truncated": false, + "block": 2, + "row": 2367 + }, + { + "path": "code.zip/code/RSA/1i - permute cluster assignments orginal RSA models.R", + "sha256": "7a8a379509dbe59ea311391dc890be960a063a8fab12c6141180b2311eb2288d", + "language": "R", + "lines": 523, + "truncated": false, + "block": 2, + "row": 2359 + }, + { + "path": "code.zip/code/RSA/1k_a - scatterplots of adjusted ts at max t.R", + "sha256": "edde2cac61568d1f2f0bc7792f08567fc393914c26c24c685919063d1cc645fc", + "language": "R", + "lines": 536, + "truncated": false, + "block": 2, + "row": 2368 + }, + { + "path": "code.zip/code/RSA/1k_c - correlations across elecs of ECoG and RSA terms.R", + "sha256": "76c714cb1c76929a1362b0c56a8e6598f01d638764cb5f7b0a78f2c685028fdd", + "language": "R", + "lines": 488, + "truncated": false, + "block": 2, + "row": 2362 + }, + { + "path": "code.zip/code/RSA/1t_a - clustering just syntax.R", + "sha256": "283a1187d05679d5c785369e305035cd4f40ab820ec8e6224a74d20ccd2312e3", + "language": "R", + "lines": 646, + "truncated": false, + "block": 2, + "row": 2369 + }, + { + "path": "code.zip/code/RSA/1t_b get cluster stats from shuffling.R", + "sha256": "402cccc61a3f6930b7b4393e569614435f1a607e3a7a36e26eeff3eb674a08c1", + "language": "R", + "lines": 627, + "truncated": false, + "block": 2, + "row": 2371 + }, + { + "path": "code.zip/code/RSA/1t_c plot syntax clusters - binomial sampling tests.R", + "sha256": "a15ba120ac89a66d6f8f79a6524946bdf25aad7155aec818eae23c2f22a33afb", + "language": "R", + "lines": 1047, + "truncated": false, + "block": 2, + "row": 2375 + }, + { + "path": "code.zip/code/RSA/1t_d - plot syntax clusters on brains by time.R", + "sha256": "cc5f1d2ab173915b47d68973083da64398e2d4cbf33e986b28d97f1ecf385511", + "language": "R", + "lines": 311, + "truncated": false, + "block": 2, + "row": 2338 + }, + { + "path": "code.zip/code/RSA/1v - Venn diagrams of SP vs LP and sig RSA terms.R", + "sha256": "37efc58c39f996e574f4d7fbf20fe04db75c24c18a81d7ced206a7d003410329", + "language": "R", + "lines": 484, + "truncated": false, + "block": 2, + "row": 2358 + }, + { + "path": "code.zip/code/functions/elementwise_matrix_apply.R", + "sha256": "0a3b8c2fecace24cb39388c26e2610c712b8595e2d2ea9f9f1b46a1896b93d57", + "language": "R", + "lines": 47, + "truncated": false, + "block": 2, + "row": 2264 + }, + { + "path": "code.zip/code/functions/elementwise_matrix_mean.R", + "sha256": "30cb3684b8637fbc400acd7ccb6954e657ca936f3e797373c982303a9a19c8a0", + "language": "R", + "lines": 17, + "truncated": false, + "block": 2, + "row": 2253 + }, + { + "path": "code.zip/code/functions/fisher_z_transform.R", + "sha256": "719cb335f65a30e6e3beeec13c5b34ed83c49be947e38808a078652ad48e30da", + "language": "R", + "lines": 16, + "truncated": false, + "block": 2, + "row": 2252 + }, + { + "path": "code.zip/code/functions/get_significant_windows.R", + "sha256": "1a4e5f8646733524676eff8ec5181f4cc0d49281a616f4329a51ed110d2a9924", + "language": "R", + "lines": 163, + "truncated": false, + "block": 2, + "row": 2324 + }, + { + "path": "code.zip/code/functions/just_good_trial_functions - lists.R", + "sha256": "3fb255d94860b12c7128414f171a0e8871019746ba353ba9b0dd89c22d07f2eb", + "language": "R", + "lines": 108, + "truncated": false, + "block": 2, + "row": 2289 + }, + { + "path": "code.zip/code/functions/just_good_trial_functions.R", + "sha256": "5100ba2d6dca6753688e499a54f33ef2dc9ac9d7779d03bf4626c62f640b4057", + "language": "R", + "lines": 150, + "truncated": false, + "block": 2, + "row": 2322 + }, + { + "path": "code.zip/code/functions/min_max.R", + "sha256": "b8f999d070f809327a272db8ee3c8dec3fb86713883d35ee278a8916ab428085", + "language": "R", + "lines": 36, + "truncated": false, + "block": 2, + "row": 2260 + }, + { + "path": "code.zip/code/functions/smoothing.R", + "sha256": "c9d71316e98ba8b619d34aac77b4827ba8cdaedd157fc130a6458a540a859e08", + "language": "R", + "lines": 35, + "truncated": false, + "block": 2, + "row": 2261 + }, + { + "path": "code.zip/code/functions/time_convert.R", + "sha256": "2356c8b774f0f244244864270e6f80fc0ac670d888cb4a24f8cc59d9955cc186", + "language": "R", + "lines": 37, + "truncated": false, + "block": 2, + "row": 2262 + }, + { + "path": "code.zip/code/functions/unregister_dopar.R", + "sha256": "3b945bfcaf0075b87a7287769161ba34dd2a7ae4baebb8f1a3b903823570e767", + "language": "R", + "lines": 8, + "truncated": false, + "block": 2, + "row": 2249 + }, + { + "path": "code.zip/code/preprocessing/1 - clean up psychopy log.R", + "sha256": "c25eed9e5ef9ef2125e00c133c0131fc9e507ee92418768a5116e9d3243839b0", + "language": "R", + "lines": 256, + "truncated": false, + "block": 2, + "row": 2335 + }, + { + "path": "code.zip/code/preprocessing/2 - convert cleaned log to 512 Hz.R", + "sha256": "2410e99dd592cf493e9878d1832b7e8f29cccce76f865c6f30e97b0b8b62fc81", + "language": "R", + "lines": 201, + "truncated": false, + "block": 2, + "row": 2329 + }, + { + "path": "code.zip/code/preprocessing/3 - downsample audio.R", + "sha256": "c1cfefce4e6e9540ba5787486fa62f8b7dc2c7a52e2a8bc16080e6a73324414f", + "language": "R", + "lines": 95, + "truncated": false, + "block": 2, + "row": 2280 + }, + { + "path": "code.zip/code/preprocessing/4 - align audio, ecog, psychopy log with drift adjustment.R", + "sha256": "f893ce02f175bb977ba0219475d183cdfd603fecdbacda8ed178fc614380da97", + "language": "R", + "lines": 339, + "truncated": false, + "block": 2, + "row": 2345 + }, + { + "path": "code.zip/code/preprocessing/5 - add production data to 512Hz log.R", + "sha256": "41fce99ffc802080d3fc6d575ea8989cc6df3d6b627fa277fe76d046e753b8f9", + "language": "R", + "lines": 240, + "truncated": false, + "block": 2, + "row": 2333 + }, + { + "path": "code.zip/code/preprocessing/5point5 - get onset latencies.R", + "sha256": "cc8e1aac3190be1d4ac8ef4726240a6fc68ae104aa6da38b127a652b65d76a16", + "language": "R", + "lines": 292, + "truncated": false, + "block": 2, + "row": 2346 + }, + { + "path": "code.zip/code/preprocessing/6_7_reference_hilbert_epoch.m", + "sha256": "901a32a475653953fb5528e21841be9e846b6aa0ce891c2c3560a5236227a8ce", + "language": "MATLAB", + "lines": 510, + "truncated": false, + "block": 2, + "row": 1559 + }, + { + "path": "code.zip/code/preprocessing/8 - inspect and find visual electrodes.R", + "sha256": "028cba70916101a28f89da1cdf869aaa65df4a309a60c5988d027a02b3dfbb37", + "language": "R", + "lines": 366, + "truncated": false, + "block": 2, + "row": 2348 + }, + { + "path": "code.zip/code/preprocessing/9 - make sample matrices and onset times.R", + "sha256": "080c1431ee016d9c325c537dc633cb0e11b964eb6196dedb2865b6091be7f882", + "language": "R", + "lines": 241, + "truncated": false, + "block": 2, + "row": 2336 + }, + { + "path": "code.zip/code/task ECoG comparisons/ROI wilcox tests and squiggle plots/1a - squiggle plots - regions - data unwarped.R", + "sha256": "3102820f0c0aac2db2dad944ffee09a8ec26915e8ada8ac03910f3a227131d05", + "language": "R", + "lines": 1016, + "truncated": false, + "block": 2, + "row": 2377 + }, + { + "path": "code.zip/code/task ECoG comparisons/ROI wilcox tests and squiggle plots/1b - squiggle plots - regions - data warped.R", + "sha256": "c7f41510e2fa5af968a04c9e64f4786296e6e69127aa99529ef7b66d257ba390", + "language": "R", + "lines": 935, + "truncated": false, + "block": 2, + "row": 2376 + }, + { + "path": "code.zip/code/task ECoG comparisons/electrode wilcox tests and brain plots/1 - get electrode wilcox tests for each electrode by patient.R", + "sha256": "fd7139bd1c49cb54f345c78c4c6139a1ca4ea3bdd49fc17b2ef28acb8065affb", + "language": "R", + "lines": 529, + "truncated": false, + "block": 2, + "row": 2365 + }, + { + "path": "code.zip/code/task ECoG comparisons/electrode wilcox tests and brain plots/2 - combine brain plot data from all patients.R", + "sha256": "eb17ea98d33d12c664a10f67609d98f1b59f827729dab05d89681fba2ab26a42", + "language": "R", + "lines": 119, + "truncated": false, + "block": 2, + "row": 2290 + }, + { + "path": "code.zip/code/task ECoG comparisons/electrode wilcox tests and brain plots/3 - get electrode wilcox tests for each electrode by patient - all time.R", + "sha256": "984556f3187d9a143affe166919942716f76f1a16b537edd322cff83db79a67b", + "language": "R", + "lines": 434, + "truncated": false, + "block": 2, + "row": 2357 + }, + { + "path": "code.zip/code/task ECoG comparisons/electrode wilcox tests and brain plots/three_plot_elec_ds.m", + "sha256": "9cf3f9a4b0ae8e6a6ebca2ad50a255a1e28b7f28907d48ae1c04444ab4652235", + "language": "MATLAB", + "lines": 225, + "truncated": false, + "block": 2, + "row": 1538 + }, + { + "path": "code.zip/code/temporal warping/1 - simple linear stretch to median RT.R", + "sha256": "929c14fa9218535f756ebb052051b28f4873634f107b94af24115fee3d14af15", + "language": "R", + "lines": 510, + "truncated": false, + "block": 2, + "row": 2366 + }, + { + "path": "readme.txt", + "sha256": "d8e23665435b4cdec2dc08054e9859d335b557f2b19fea23587a206e9d3dbdd0", + "language": "Text", + "lines": 20, + "truncated": false, + "block": 2, + "row": 2599 + } + ] +} \ No newline at end of file diff --git a/manifests/16/github.com__sohilaosama__covid-19.json b/manifests/16/github.com__sohilaosama__covid-19.json new file mode 100644 index 0000000000000000000000000000000000000000..909b8e11c2cc3dd630435d9fb3faff85dcc944fa --- /dev/null +++ b/manifests/16/github.com__sohilaosama__covid-19.json @@ -0,0 +1,210 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/sohilaosama/covid-19", + "url": "https://github.com/SohilaOsama/COVID-19", + "host": "github.com", + "commit": "97ce7b1e13c3864d65f9ebafc6fb54e66d66b440", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Applicability_Domain_Analysis.ipynb", + "sha256": "6cdd2d3ad7ff33fdd8bdc32be81714e1d5c6361a615b8a743c84a0fb6c2d6d25", + "language": "Jupyter", + "lines": 700, + "truncated": false, + "block": 2, + "row": 1109 + }, + { + "path": "Classfication.ipynb", + "sha256": "023c4e15363f4227824a6c949857364c79e249c53ab1f804a161a94dd3cd1ff9", + "language": "Jupyter", + "lines": 228, + "truncated": false, + "block": 2, + "row": 1053 + }, + { + "path": "Define_SHAP_Top_Features.ipynb", + "sha256": "aaad53e7ab14a4aaeacc2e9c102643d93326161c7c7039e01d92ee266f7b8836", + "language": "Jupyter", + "lines": 306, + "truncated": false, + "block": 2, + "row": 1046 + }, + { + "path": "LICENSE", + "sha256": "c71d239df91726fc519c6eb72d318ec65820627232b2f796219e87dcf35d0ab4", + "language": "License", + "lines": 201, + "truncated": false, + "block": 1, + "row": 2216 + }, + { + "path": "README.md", + "sha256": "faca88083fc540e23cf38feed548943111e3dd45bb4280094f279b67b5435dbd", + "language": "Text", + "lines": 2, + "truncated": false, + "block": 2, + "row": 2586 + }, + { + "path": "about.py", + "sha256": "8ff1da1f2cf015040e0caae0f896817238c98e46e8c0afd148603c1095079c6a", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 2, + "row": 1633 + }, + { + "path": "app.py", + "sha256": "5bf3c8f6745b61991ddeaa06dfc8613f7c6e7e7b1b0a1d91df10430bb39a916c", + "language": "Python", + "lines": 388, + "truncated": false, + "block": 2, + "row": 2167 + }, + { + "path": "final_class copy 2.ipynb", + "sha256": "aa2e8dfb306c1ba2884d06ce843eef9a99b225cc4c063bd610829af5b48d68da", + "language": "Jupyter", + "lines": 1122, + "truncated": false, + "block": 2, + "row": 1116 + }, + { + "path": "final_class copy.ipynb", + "sha256": "d0d12daa95ab72b85aa59969ab116265271ef6f5fead35542df0c757302d5285", + "language": "Jupyter", + "lines": 973, + "truncated": false, + "block": 2, + "row": 1113 + }, + { + "path": "final_class.ipynb", + "sha256": "2b98c71f9f89decf29f90bd8598824f48bd3dc96ecee4e36c6dabea627c45dc1", + "language": "Jupyter", + "lines": 824, + "truncated": false, + "block": 2, + "row": 1108 + }, + { + "path": "mission.py", + "sha256": "39fa24aab9c9ee9584bc9d971704c4e56a70c9cb2bb22e844cfe5c277abd821e", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 2, + "row": 1718 + }, + { + "path": "molecular_visualization.py", + "sha256": "4cc7e72b7d73a34042125fd94aba1b4106298ba48f1ae710d6404b28b5826627", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 2, + "row": 1807 + }, + { + "path": "multi.ipynb", + "sha256": "2712780f497e1af98f2e1dab827be59a1da192918fbd0e9ad17564bd3ecba29b", + "language": "Jupyter", + "lines": 634, + "truncated": false, + "block": 2, + "row": 1102 + }, + { + "path": "multi2.ipynb", + "sha256": "7943346a5dd2147e1ecb4096dc10ec0015f9a41ea10b08d889bc687dd26cbfd6", + "language": "Jupyter", + "lines": 536, + "truncated": false, + "block": 2, + "row": 1100 + }, + { + "path": "neural_network_predictor.py", + "sha256": "a2a9ef9b499cb1d7c82a7c480f2874807efbccd7679d68309cdc4c047abd778f", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 2, + "row": 1825 + }, + { + "path": "packages.sh", + "sha256": "877ff8bc6565fd0a32042267f8a893c1ac6191d7643cd1a89673350ec9edd266", + "language": "Shell", + "lines": 2, + "truncated": false, + "block": 2, + "row": 2489 + }, + { + "path": "predict_with_nn.py", + "sha256": "7ca7da1272e6f37d236c99267e3588b87ca1cf254e48cf783412365404bb98de", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 2, + "row": 1674 + }, + { + "path": "preprocessing.ipynb", + "sha256": "5c4089e82c7af3ee7a69aba3926d074d31813ea2195b76a1575ea0b196031b30", + "language": "Jupyter", + "lines": 2324, + "truncated": false, + "block": 2, + "row": 1118 + }, + { + "path": "readme.py", + "sha256": "f6ff4cd59f5750c9879877c6a8f5f57db5e75c8b7b387cc593ec991fe7f620ee", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 2, + "row": 1755 + }, + { + "path": "script.js", + "sha256": "8b575dc3bb9e4326c8cec51d484fbbbc62b2f8add28c3d2802e179c893b5074c", + "language": "JavaScript", + "lines": 4, + "truncated": false, + "block": 2, + "row": 908 + }, + { + "path": "xgboost_ic50_predictor.py", + "sha256": "519d41ccc899f218f3090813030ace10ac104e5be7a064257edd4cd4deab6fa4", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 2, + "row": 1720 + }, + { + "path": "xgboost_predictor.py", + "sha256": "8c3dd852096cb29ee9840f65872f7dc4bb54f077c616f9235106c5cd11f69d65", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 2, + "row": 1716 + } + ] +} \ No newline at end of file diff --git a/manifests/16/github.com__stratton-lab__bigotte-2025-cilia.json b/manifests/16/github.com__stratton-lab__bigotte-2025-cilia.json new file mode 100644 index 0000000000000000000000000000000000000000..44db192ce51956bfb9f7524bb328fa7490cfc2cc --- /dev/null +++ b/manifests/16/github.com__stratton-lab__bigotte-2025-cilia.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/stratton-lab/bigotte-2025-cilia", + "url": "https://github.com/stratton-lab/Bigotte-2025-Cilia", + "host": "github.com", + "commit": "010ea7ca3a3a19fa1a040c5d5ab3c03b37bcdf03", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Figure_1_scrnaseq_MAID_analysis.R", + "sha256": "7f6424907ed1ab10996c3ade1ea4a91c6af490867dba36bfd847fecf8141d7af", + "language": "R", + "lines": 221, + "truncated": false, + "block": 1, + "row": 10346 + }, + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "cilia.r", + "sha256": "9f76e015d68aa0e0deadb210b30efcc1de3247586ddbf1236b45a4848ee9eea4", + "language": "R", + "lines": 480, + "truncated": false, + "block": 1, + "row": 10481 + } + ] +} \ No newline at end of file diff --git a/manifests/17/github.com__allenneuraldynamics__aind-ephys-processing-qc.json b/manifests/17/github.com__allenneuraldynamics__aind-ephys-processing-qc.json new file mode 100644 index 0000000000000000000000000000000000000000..db2f0d3ccc7560e8176e279ee90f5c45f914f284 --- /dev/null +++ b/manifests/17/github.com__allenneuraldynamics__aind-ephys-processing-qc.json @@ -0,0 +1,48 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/allenneuraldynamics/aind-ephys-processing-qc", + "url": "https://github.com/AllenNeuralDynamics/aind-ephys-processing-qc", + "host": "github.com", + "commit": "f8c30542c2e81e1aa4e77e1b2cca964c380dbd74", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "d7609c858f47823b9d7cee46253bffc40e93fd55effa744aa249e97a603c65cb", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1139 + }, + { + "path": "README.md", + "sha256": "2dcab19953a73cf679a6f35fd5a8cab90a729372619dda2d7a0ae62dc8ef4db3", + "language": "Text", + "lines": 37, + "truncated": false, + "block": 2, + "row": 2612 + }, + { + "path": "code/qc_utils.py", + "sha256": "f0d0cbddd84bfbcea475fb701c2800444c10014f10ba9c823eae1d236bd45c31", + "language": "Python", + "lines": 1597, + "truncated": false, + "block": 2, + "row": 2242 + }, + { + "path": "code/run_capsule.py", + "sha256": "d2acf6b6170841ecc801d448ba140438b8f61fca30220a19cefc497337e1d3b7", + "language": "Python", + "lines": 343, + "truncated": false, + "block": 2, + "row": 2131 + } + ] +} \ No newline at end of file diff --git a/manifests/17/github.com__lugia-xiao__ndreamer_reproducible.json b/manifests/17/github.com__lugia-xiao__ndreamer_reproducible.json new file mode 100644 index 0000000000000000000000000000000000000000..5087eb9c1cc3e5acbc23be8b10361748e5a7122b --- /dev/null +++ b/manifests/17/github.com__lugia-xiao__ndreamer_reproducible.json @@ -0,0 +1,273 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/lugia-xiao/ndreamer_reproducible", + "url": "https://github.com/lugia-xiao/NDreamer_reproducible", + "host": "github.com", + "commit": "118684aa70fe23fcb60985c54121984a27ede9d2", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "81cbae84a29ce7e770bf2bc7b178e50bda0ce8de6067aba661b0bc7b05b562f8", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2237 + }, + { + "path": "R_plot_codes/AD_ADNC_code/AD_neurons_GO.R", + "sha256": "ac73119c25574f400902373bc2fa7fb3b56368d19f3240b5ad6587e99541e508", + "language": "R", + "lines": 51, + "truncated": false, + "block": 1, + "row": 10192 + }, + { + "path": "R_plot_codes/AD_ADNC_code/AD_respiration_GO.R", + "sha256": "eb42f4f29dcd22cfcc985337faa48333ccc27242e2b66d90561984dd39d20cfe", + "language": "R", + "lines": 36, + "truncated": false, + "block": 1, + "row": 10008 + }, + { + "path": "R_plot_codes/AD_ADNC_code/GO_AD.R", + "sha256": "4fb84f86e64a173ca2d46994e66764392197bdd2dada21b63224b26469f44cb0", + "language": "R", + "lines": 48, + "truncated": false, + "block": 1, + "row": 10037 + }, + { + "path": "R_plot_codes/AD_ADNC_code/common_genes.R", + "sha256": "d41935d34085629004b661c890b88ad0e0ca6c06a4de5a7c8757b2ccb6b3f903", + "language": "R", + "lines": 20, + "truncated": false, + "block": 1, + "row": 9974 + }, + { + "path": "R_plot_codes/case_control_code/radar.R", + "sha256": "f64a37c217af9d97e357763171d12dd2a67886ff34c32de1a039d44df0168e24", + "language": "R", + "lines": 139, + "truncated": false, + "block": 1, + "row": 10270 + }, + { + "path": "R_plot_codes/case_control_code/radar_mouse.R", + "sha256": "3869f6493d80de956b9c6de13b714064b79ae4c4b9d6e4aa506db7156b45c62f", + "language": "R", + "lines": 127, + "truncated": false, + "block": 1, + "row": 10231 + }, + { + "path": "R_plot_codes/case_control_code/simple_GO.R", + "sha256": "5e2b26b566b13fee1dcff1330d9c5067836900d1bf99bc94d715b4b567e67f4c", + "language": "R", + "lines": 52, + "truncated": false, + "block": 1, + "row": 10413 + }, + { + "path": "R_plot_codes/case_control_code/simple_GO_mouse.R", + "sha256": "c63c05ff1715cc4d6a0b8c692e2c3ec6b7354427b4faeed2314a810db45850f5", + "language": "R", + "lines": 46, + "truncated": false, + "block": 1, + "row": 10360 + }, + { + "path": "R_plot_codes/experimental_benchmark_plot_codes/ablation.R", + "sha256": "61534d86217609401b215731a0377df3d9bcf47c336520c0348f67516ff162fd", + "language": "R", + "lines": 43, + "truncated": false, + "block": 1, + "row": 10046 + }, + { + "path": "R_plot_codes/experimental_benchmark_plot_codes/overall_plot_experimental.R", + "sha256": "41fc8fcc2a5ab20cf5e0c377dc30fbae8c20e1d60e37d7869b3716bf1d7ff12d", + "language": "R", + "lines": 92, + "truncated": false, + "block": 1, + "row": 10174 + }, + { + "path": "R_plot_codes/experimental_benchmark_plot_codes/plot_experimental.R", + "sha256": "82b38bf695e1ee477f24b749272c03e88d99d0fec31499e83baaee6f01630ebe", + "language": "R", + "lines": 93, + "truncated": false, + "block": 1, + "row": 10190 + }, + { + "path": "R_plot_codes/experimental_benchmark_plot_codes/plot_experimental_have_batch.R", + "sha256": "995d14e7f24fa510b4fadc773110e6b81eec9c066246a5810319bad468b8243d", + "language": "R", + "lines": 104, + "truncated": false, + "block": 1, + "row": 10227 + }, + { + "path": "R_plot_codes/experimental_benchmark_plot_codes/plot_experimental_have_batch_ndreamer.R", + "sha256": "43e8b43b75d310863851b5a6edf07b8a10f2375b2328f730044353520e99feee", + "language": "R", + "lines": 104, + "truncated": false, + "block": 1, + "row": 10226 + }, + { + "path": "benchmark/cellanova.ipynb", + "sha256": "2beffdc4b44d0e04739f8db7752d334c3b29825ba0d72dadb9d7cf7f348af7c1", + "language": "Jupyter", + "lines": 160, + "truncated": false, + "block": 1, + "row": 1821 + }, + { + "path": "benchmark/cellanova.nbconvert.ipynb", + "sha256": "2beffdc4b44d0e04739f8db7752d334c3b29825ba0d72dadb9d7cf7f348af7c1", + "language": "Jupyter", + "lines": 160, + "truncated": false, + "block": 1, + "row": 1821 + }, + { + "path": "benchmark/cinema_ot.ipynb", + "sha256": "86d23886a20adb21931f669333cf6928b817201edac19a56a21d91b504abcdd8", + "language": "Jupyter", + "lines": 140, + "truncated": false, + "block": 1, + "row": 1793 + }, + { + "path": "benchmark/cinema_ot.nbconvert.ipynb", + "sha256": "86d23886a20adb21931f669333cf6928b817201edac19a56a21d91b504abcdd8", + "language": "Jupyter", + "lines": 140, + "truncated": false, + "block": 1, + "row": 1793 + }, + { + "path": "benchmark/cinema_ot_ITE.ipynb", + "sha256": "2c8552d1793a5984f45bca2e89f822b1eddcdb572e3a9b1a66d51ffea7171ff4", + "language": "Jupyter", + "lines": 113, + "truncated": false, + "block": 1, + "row": 1733 + }, + { + "path": "benchmark/cinema_ot_ITE.nbconvert.ipynb", + "sha256": "2c8552d1793a5984f45bca2e89f822b1eddcdb572e3a9b1a66d51ffea7171ff4", + "language": "Jupyter", + "lines": 113, + "truncated": false, + "block": 1, + "row": 1733 + }, + { + "path": "benchmark/evaluate_batch.ipynb", + "sha256": "35e7f513279691fa13710a7bdded77ac6eec6b34437969f827aa6980c07b9d12", + "language": "Jupyter", + "lines": 147, + "truncated": false, + "block": 1, + "row": 1803 + }, + { + "path": "benchmark/evaluate_batch.nbconvert.ipynb", + "sha256": "35e7f513279691fa13710a7bdded77ac6eec6b34437969f827aa6980c07b9d12", + "language": "Jupyter", + "lines": 147, + "truncated": false, + "block": 1, + "row": 1803 + }, + { + "path": "benchmark/evaluate_cellanova.ipynb", + "sha256": "caa1dc718a6969e4d1e87bd5136ed2f7427d7f5d04f0e0b1c398e9bf825ff68d", + "language": "Jupyter", + "lines": 268, + "truncated": false, + "block": 1, + "row": 1926 + }, + { + "path": "benchmark/evaluate_scd.ipynb", + "sha256": "0f9af9eaa920bfd658163e02d62ca46aa7e8a8b2663a8cb6bae92641b35c8038", + "language": "Jupyter", + "lines": 291, + "truncated": false, + "block": 1, + "row": 1940 + }, + { + "path": "benchmark/get_cellanova_mse.ipynb", + "sha256": "d827f3333a087004f2a911fb4bb4099797d1b0b4a2277124d37629703771fb4d", + "language": "Jupyter", + "lines": 144, + "truncated": false, + "block": 1, + "row": 1800 + }, + { + "path": "benchmark/metrics.py", + "sha256": "e3ba29bcec7438a86ec273b3c7764961e930fb96e28379255f48c600833cdf41", + "language": "Python", + "lines": 275, + "truncated": false, + "block": 1, + "row": 8441 + }, + { + "path": "benchmark/mixscape.ipynb", + "sha256": "bccb9a50cdef699f51e0b92dd2a055f428b3440d68602089bec979d68448c04a", + "language": "Jupyter", + "lines": 172, + "truncated": false, + "block": 1, + "row": 1827 + }, + { + "path": "benchmark/mixscape.nbconvert.ipynb", + "sha256": "bccb9a50cdef699f51e0b92dd2a055f428b3440d68602089bec979d68448c04a", + "language": "Jupyter", + "lines": 172, + "truncated": false, + "block": 1, + "row": 1827 + }, + { + "path": "benchmark/plot_cellanova.ipynb", + "sha256": "8af35f7fe592167a2c0b30eda936d8c9874176272da54ab4fd647d87fb2a2a0f", + "language": "Jupyter", + "lines": 104, + "truncated": false, + "block": 1, + "row": 1763 + } + ] +} \ No newline at end of file diff --git a/manifests/17/zenodo__21428706.json b/manifests/17/zenodo__21428706.json new file mode 100644 index 0000000000000000000000000000000000000000..3a99e65227723ec05afff6bb4b0c4a04d8cde9e6 --- /dev/null +++ b/manifests/17/zenodo__21428706.json @@ -0,0 +1,21 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:21428706", + "url": "https://zenodo.org/records/21428706", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-NC-ND-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "with_conditions", + "files": [ + { + "path": "README.txt", + "sha256": "80200b1a39befe7b10ce404d6b1a8161f5b4b3f6a2c64dd18f12c5ce6a97ca60", + "language": "Text", + "lines": 58, + "truncated": false, + "block": 2, + "row": 2626 + } + ] +} \ No newline at end of file diff --git a/manifests/18/zenodo__20137621.json b/manifests/18/zenodo__20137621.json new file mode 100644 index 0000000000000000000000000000000000000000..6f649a2a0e8746737fc169e2bc9ec99da3c7e3ee --- /dev/null +++ b/manifests/18/zenodo__20137621.json @@ -0,0 +1,111 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:20137621", + "url": "10.5281/zenodo.20137621", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "d84f2785e586165502667c0622c579c09aead145f1d4edae6436066ef6da3924", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2079 + }, + { + "path": "README.md", + "sha256": "8c8100e208b15a89ee8b93cb87b6d575a73a266a2924906a8307cc84fe650784", + "language": "Text", + "lines": 146, + "truncated": false, + "block": 1, + "row": 11918 + }, + { + "path": "dev. milestones (fig. 6)/script_eyeopening.R", + "sha256": "210b34ba5f5af5839d9716e90440275efd6944de6fd82d70725ecca7f9ac73da", + "language": "R", + "lines": 73, + "truncated": false, + "block": 1, + "row": 10051 + }, + { + "path": "dev. milestones (fig. 6)/script_weight.R", + "sha256": "703013959ab3fcbaceb66101a0ba11cf17b248a7fe770546095f1d40ab8cbac8", + "language": "R", + "lines": 69, + "truncated": false, + "block": 1, + "row": 10027 + }, + { + "path": "expression (supp. fig. 1-2)/Bakken et al., 2021.R", + "sha256": "c802e170540376d977cb25359a31890e51bbfd12f2a06617daf2d63323dbc69a", + "language": "R", + "lines": 187, + "truncated": false, + "block": 1, + "row": 10312 + }, + { + "path": "expression (supp. fig. 1-2)/Jorstad et al., 2023.R", + "sha256": "13fd6d8dc51aefb29de960316bbefc67e28a53ea919c4fefacbe3779c3e72b82", + "language": "R", + "lines": 149, + "truncated": false, + "block": 1, + "row": 10276 + }, + { + "path": "expression (supp. fig. 1-2)/Saunders et al., 2018.R", + "sha256": "a6202d04f86688ddc2c333753c37da84637567fbc4b83baf55135c3ebb449011", + "language": "R", + "lines": 133, + "truncated": false, + "block": 1, + "row": 10267 + }, + { + "path": "expression (supp. fig. 1-2)/Schaum et al., 2018.R", + "sha256": "d6dbcef0a602990db6021f5c15a97defd14f94a2d13fb8c682cab7cabd0e1ece", + "language": "R", + "lines": 105, + "truncated": false, + "block": 1, + "row": 10200 + }, + { + "path": "expression (supp. fig. 1-2)/Zhang et al., 2014.R", + "sha256": "93faba76a99f20e589d7ae075fbbcdb917275b9c7f0b8905f801fc2e0b909aa3", + "language": "R", + "lines": 76, + "truncated": false, + "block": 1, + "row": 10125 + }, + { + "path": "expression (supp. fig. 1-2)/Zhang et al., 2016.R", + "sha256": "e13d2596c13bc4e20d690608e0de223f897ae27e901e51e3f7d8af319ea13e41", + "language": "R", + "lines": 170, + "truncated": false, + "block": 1, + "row": 10232 + }, + { + "path": "sholl analysis (supp. fig. 9b)/rescue_script.R", + "sha256": "24de05663a6a95f39e6505c954023348d68ae90394276c623d717123b30696fb", + "language": "R", + "lines": 65, + "truncated": false, + "block": 1, + "row": 10041 + } + ] +} \ No newline at end of file diff --git a/manifests/18/zenodo__20840795.json b/manifests/18/zenodo__20840795.json new file mode 100644 index 0000000000000000000000000000000000000000..e60c077918250a48df5e4c0cb824297bfec74d52 --- /dev/null +++ b/manifests/18/zenodo__20840795.json @@ -0,0 +1,255 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:20840795", + "url": "https://doi.org/10.5281/zenodo.20840795", + "host": "zenodo.org", + "commit": "", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "61c34b8f846d64c277eb49eff07914fb949577fcd0881cfc0e07fbd97bbe1f67", + "language": "License", + "lines": 205, + "truncated": false, + "block": 1, + "row": 2215 + }, + { + "path": "README.md", + "sha256": "6b11f79a3f28773868c133de0cf1391a54895b0563abf8ffc4687f8b31aae7c7", + "language": "Text", + "lines": 535, + "truncated": false, + "block": 1, + "row": 11996 + }, + { + "path": "cascade/__init__.py", + "sha256": "2a9449efa6299da6cefc30d4a6af26a50a658bc50267fc4d0713d3bc32c95cda", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 1, + "row": 5240 + }, + { + "path": "cascade/core/__init__.py", + "sha256": "6d96441d2e9b6a9369b91be8a768e5a20620d6c738f03debf8d1bc025f53eeea", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 1, + "row": 5099 + }, + { + "path": "cascade/core/avalanche.py", + "sha256": "dc5ae3efd8df3e368b9ec0292fb94be91ddb6a48851fd40cb596a75d53af20e4", + "language": "Python", + "lines": 151, + "truncated": false, + "block": 1, + "row": 7581 + }, + { + "path": "cascade/core/bursts.py", + "sha256": "438b0a687a2c0a66a619b53d733ceb5e80aaa702d53e5be83d4634ecf5eba03d", + "language": "Python", + "lines": 137, + "truncated": false, + "block": 1, + "row": 7426 + }, + { + "path": "cascade/core/connectivity.py", + "sha256": "5162eca0cc678058168efdf0c58fadf55ad0b8976af3c34ecf248c49ac1b6cb5", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 1, + "row": 6446 + }, + { + "path": "cascade/core/criticality.py", + "sha256": "b6614f4fff5b0c628147848616f4dce981fe2fbe7b9867e91370cc6fe34aea6c", + "language": "Python", + "lines": 332, + "truncated": false, + "block": 1, + "row": 8739 + }, + { + "path": "cascade/core/entropy.py", + "sha256": "8402d24e8052846b4cc8dee9c005035da3998eae67030ba2eca64e29dd665e44", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 1, + "row": 6306 + }, + { + "path": "cascade/core/plots.py", + "sha256": "41098f7ae11e98a7bfa37f2818d139637f204eea26c13551cbad0116f7cac173", + "language": "Python", + "lines": 386, + "truncated": false, + "block": 1, + "row": 9161 + }, + { + "path": "cascade/core/spikes.py", + "sha256": "69fdf34aa546679f2193357165d74d9fd58b77af2edcc7efd87ec099a28a990c", + "language": "Python", + "lines": 188, + "truncated": false, + "block": 1, + "row": 8099 + }, + { + "path": "cascade/loaders/__init__.py", + "sha256": "a271da583822b29b0b309938ab098bd0a19bec7f3ae7b4a4c53f3ed7e3d109d2", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 1, + "row": 5188 + }, + { + "path": "cascade/loaders/axion_loader.py", + "sha256": "9df12559b9bfc8181a7fe96ad84fd004c0efea375ba19c90fde3961976247a79", + "language": "Python", + "lines": 188, + "truncated": false, + "block": 1, + "row": 8122 + }, + { + "path": "cascade/loaders/base_loader.py", + "sha256": "778442b75cb554fc18fb18e17b6ad900c91294512e615d1d8919aae11e229f12", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 1, + "row": 6037 + }, + { + "path": "cascade/loaders/brainwave_loader.py", + "sha256": "8bba6d8e9b52c323a9a00e6625345a7b042ac0c9b76aeb47c32e701f320c22fa", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 1, + "row": 7868 + }, + { + "path": "cascade/loaders/cl1_loader.py", + "sha256": "fa142fedc12c27a96a93d4ca2b9e6474477acda787366b26da7c2cb7d2c7568a", + "language": "Python", + "lines": 154, + "truncated": false, + "block": 1, + "row": 7961 + }, + { + "path": "cascade/loaders/maxwell_loader.py", + "sha256": "c27c98ea11a2c3d8b031188553441fd9f59abff09baa669191d13797d1a66a83", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 1, + "row": 8025 + }, + { + "path": "cascade/loaders/mcs_loader.py", + "sha256": "8c12f91729e36703e8c157a188cbc9f896046a17ce6517d4b5ac03f34cec6271", + "language": "Python", + "lines": 191, + "truncated": false, + "block": 1, + "row": 8239 + }, + { + "path": "cascade/ltpltd.py", + "sha256": "69f3f32177be0d1f2cd38638994320a5cd189124c03d81588205e71ffe1e99b8", + "language": "Python", + "lines": 331, + "truncated": false, + "block": 1, + "row": 8848 + }, + { + "path": "cascade/run_analysis.py", + "sha256": "3dbfa666ed97fdecb0dd13f84edeabe1e172bedd7d8fd256b3250a15219618e0", + "language": "Python", + "lines": 706, + "truncated": false, + "block": 1, + "row": 9709 + }, + { + "path": "cascade/scanner.py", + "sha256": "a35f604d2b218da3b52170be5b8e4ee4a3051b132a7176d1c21c4a83efb47ade", + "language": "Python", + "lines": 447, + "truncated": false, + "block": 1, + "row": 9280 + }, + { + "path": "cascade/tests/__init__.py", + "sha256": "bf5a6672bc6dfd83b89b0aea08280b6651fa13a26047aaeff676476e05d2b38d", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4984 + }, + { + "path": "cascade/tests/self_test.py", + "sha256": "48a2da4fee36113bc44a7c6f2eb14206eb64038cc99f60d4b7dcbad0d75ed636", + "language": "Python", + "lines": 267, + "truncated": false, + "block": 1, + "row": 8350 + }, + { + "path": "cascade/utils/__init__.py", + "sha256": "b6570d470943dac6351c837baad80583e21cbdf355d43e28f2b855fb44ce0349", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 1, + "row": 5186 + }, + { + "path": "cascade/utils/common.py", + "sha256": "b08803f78714b3370aedc48600ae4e4c71c2abb5c9e450dc23428eaa5479cb5f", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 1, + "row": 7186 + }, + { + "path": "cascade/utils/inspect_file.py", + "sha256": "30fa66b4d5e8bce10aea074a0be272861c8e1384437b17dfb8c2a6ab72a69cc5", + "language": "Python", + "lines": 222, + "truncated": false, + "block": 1, + "row": 7935 + }, + { + "path": "cascade/utils/io.py", + "sha256": "0a46e0fd13f0c6719f9aa102b1f069b9c1523f1df24f976bd08f2307a0e425ee", + "language": "Python", + "lines": 162, + "truncated": false, + "block": 1, + "row": 8012 + } + ] +} \ No newline at end of file diff --git a/manifests/19/figshare__31209973.json b/manifests/19/figshare__31209973.json new file mode 100644 index 0000000000000000000000000000000000000000..53efeb1361de33d001a29eb99d6b3749f55af1c7 --- /dev/null +++ b/manifests/19/figshare__31209973.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "figshare:31209973", + "url": "https://doi.org/10.6084/m9.figshare.31209973", + "host": "figshare.com", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "313a8be62298481f5eb625328a1846f36bad899196a95a9fb8a2bdfdec56da36", + "language": "Text", + "lines": 3, + "truncated": false, + "block": 1, + "row": 11775 + }, + { + "path": "example_bkh_test_set-checkpoint.py", + "sha256": "3ec5b851c5153e7f9f089f8169802cde5b7c461a5ee5c176f9bf6088b1d04ea8", + "language": "Python", + "lines": 159, + "truncated": false, + "block": 1, + "row": 7809 + }, + { + "path": "example_bkh_test_set.ipynb", + "sha256": "33a97c94c7f8ad38bb56c0b37d0233851b0daa9fef36c8384ecae15fbfa6eb46", + "language": "Jupyter", + "lines": 144, + "truncated": false, + "block": 1, + "row": 1829 + }, + { + "path": "example_bkh_test_set.py", + "sha256": "3ec5b851c5153e7f9f089f8169802cde5b7c461a5ee5c176f9bf6088b1d04ea8", + "language": "Python", + "lines": 159, + "truncated": false, + "block": 1, + "row": 7809 + }, + { + "path": "feature_map_example.ipynb", + "sha256": "fea844c076d1ead245b883af0238f83c0e120ecc6bbc2d30994ec76546d21158", + "language": "Jupyter", + "lines": 51, + "truncated": false, + "block": 1, + "row": 1696 + } + ] +} \ No newline at end of file diff --git a/manifests/19/github.com__10xgenomics__cellranger.json b/manifests/19/github.com__10xgenomics__cellranger.json new file mode 100644 index 0000000000000000000000000000000000000000..ceccec149deb9de60968723b8ff4c8f4d3f66b29 --- /dev/null +++ b/manifests/19/github.com__10xgenomics__cellranger.json @@ -0,0 +1,6861 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/10xgenomics/cellranger", + "url": "https://github.com/10XGenomics/cellranger", + "host": "github.com", + "commit": "669395e208db7ce03354091e271d893074294d28", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "92af97f87b1ae6ad452106c63bbbf9c58b23269bf43ac88080afdae61827acdb", + "language": "License", + "lines": 15, + "truncated": false, + "block": 1, + "row": 2207 + }, + { + "path": "README.md", + "sha256": "e19a2872fe81524ca4623bc6c5209b1ca5473cf8191785011c8ce3eb7e5559be", + "language": "Text", + "lines": 5, + "truncated": false, + "block": 1, + "row": 11785 + }, + { + "path": "bin/rna/mat2csv_lib.py", + "sha256": "64f1f188d26edc5ef03431ea86b1b7235e9a9d1bafa6ced2f89671c45d5c1be6", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 1, + "row": 6918 + }, + { + "path": "bin/rna/mkgtf_lib.py", + "sha256": "d623fded78ef35cbe7a4df97d6a02345237b843fc495c208b60882b0c5fed49a", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 1, + "row": 6301 + }, + { + "path": "bin/tenkit/check_fastq_params_lib.py", + "sha256": "f33d86d729454b1675b0ce326913d17c6a34f3a61f0529200c13457ed1c1ee28", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 1, + "row": 5852 + }, + { + "path": "bin/tenkit/check_fastq_paths_lib.py", + "sha256": "8f510cd13258cc91bd1ad718e996d697479dcef4412d05da2b692ebd6ecf07c8", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 1, + "row": 7314 + }, + { + "path": "bin/tenkit/docopts_lib.py", + "sha256": "c56042b8c98cc491c0515f47c0796c07d3cbb8c471ec40e54864d165c2866380", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 1, + "row": 7775 + }, + { + "path": "bin/tenkit/get_flowcell_lib.py", + "sha256": "a59f9d97ab4aa053b246343ad5336f34aa58374a4908d93f8d2604843e95ccba", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 1, + "row": 5396 + }, + { + "path": "bin/tenkit/get_max_index_len_lib.py", + "sha256": "cd676cc10a3a755932798964f2174a53592336a8a0abbe00e465f202b6dc74e4", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 1, + "row": 5452 + }, + { + "path": "bin/tenkit/truncate_lib.py", + "sha256": "c1b0e6da965ac4353d7517a790617ca498ce9909c8040908ab4ffd39bb0e0b63", + "language": "Python", + "lines": 191, + "truncated": false, + "block": 1, + "row": 7684 + }, + { + "path": "bin/tenkit/upload_lib.py", + "sha256": "60928ced0b0898f365118b517e8ebcb3ebe8458ac4e5c296299dfe22b0e0fcc8", + "language": "Python", + "lines": 227, + "truncated": false, + "block": 1, + "row": 7940 + }, + { + "path": "lib/bin/fetch_imgt_lib.py", + "sha256": "fbb771dff81602d4c5e85f40c176e2fac36c94037ea9b6de5b229db5d2420509", + "language": "Python", + "lines": 316, + "truncated": false, + "block": 1, + "row": 8365 + }, + { + "path": "lib/go/cmd/godemux/main.go", + "sha256": "c28ceeb56da73feb13ea1346bb61f78b054d68be2809fc5150257c44af42137f", + "language": "Go", + "lines": 328, + "truncated": false, + "block": 1, + "row": 485 + }, + { + "path": "lib/go/cmd/sitecheck/main.go", + "sha256": "7a79fa84b832800fd46ca931502f66593632512c0563f3d65698b87adb01f8f6", + "language": "Go", + "lines": 42, + "truncated": false, + "block": 1, + "row": 463 + }, + { + "path": "lib/go/cmd/telemetry/main.go", + "sha256": "9c2b9c95d6df3e8418ea0905ae00d87a8ef8b2b577ace28d79dfad0d20e3b538", + "language": "Go", + "lines": 485, + "truncated": false, + "block": 1, + "row": 488 + }, + { + "path": "lib/go/cmd/telemetry_config_converter/main.go", + "sha256": "0e8542d7d96c5c88fb90cb069734b62e6f84bff84cbdbb960381544ee66f91be", + "language": "Go", + "lines": 97, + "truncated": false, + "block": 1, + "row": 471 + }, + { + "path": "lib/go/multi_csv/multi.go", + "sha256": "6e37d18b0322c5a53b73b226e3f2f85cd5b58930a8ac62d50601721ff05e21a2", + "language": "Go", + "lines": 65, + "truncated": false, + "block": 1, + "row": 466 + }, + { + "path": "lib/go/sitecheck/checkers.go", + "sha256": "ac47d29c6411ada38ea9caa63145acc4539774d65b01827072cdd47812b109ad", + "language": "Go", + "lines": 993, + "truncated": false, + "block": 1, + "row": 492 + }, + { + "path": "lib/go/sitecheck/sitecheck.go", + "sha256": "40a7edfb3c0a18a795f9c98c311e67b33fc4a24c5b95c3fd8fc8348a379d83eb", + "language": "Go", + "lines": 196, + "truncated": false, + "block": 1, + "row": 480 + }, + { + "path": "lib/go/telemetry/collector/cgroup.go", + "sha256": "bace2891f81587ada4e0ee911ba2e7dddefb8563b140a6cd3c82ec6720f0cafc", + "language": "Go", + "lines": 154, + "truncated": false, + "block": 1, + "row": 473 + }, + { + "path": "lib/go/telemetry/collector/distro.go", + "sha256": "d679683d6d227f974404e48252e248f7844c39a753a44fb630c0b64654a55247", + "language": "Go", + "lines": 210, + "truncated": false, + "block": 1, + "row": 479 + }, + { + "path": "lib/go/telemetry/collector/env.go", + "sha256": "bd72fc63c5165b62b2f8e031373abd83d95aa594ea0c9f8aabb8aca4202c4b95", + "language": "Go", + "lines": 31, + "truncated": false, + "block": 1, + "row": 459 + }, + { + "path": "lib/go/telemetry/collector/file_context.go", + "sha256": "2ec64a60466a8efd2091d8624b767f264fc87a2cf9a739363a5b754c5150ab7b", + "language": "Go", + "lines": 124, + "truncated": false, + "block": 1, + "row": 474 + }, + { + "path": "lib/go/telemetry/collector/file_filter.go", + "sha256": "20097e7f3ac0ce991f360201b5decae4bb2f7467ac78631476e9702d1cc19912", + "language": "Go", + "lines": 91, + "truncated": false, + "block": 1, + "row": 468 + }, + { + "path": "lib/go/telemetry/collector/file_size.go", + "sha256": "a606b945d6b761f7e223f0c2659d772defb3eac451687e965c0b256177405ac3", + "language": "Go", + "lines": 11, + "truncated": false, + "block": 1, + "row": 457 + }, + { + "path": "lib/go/telemetry/collector/filesystem.go", + "sha256": "75c20b1696ecfd61e15d3192456646d11bcebd6c4fb449587dae5291509c297b", + "language": "Go", + "lines": 339, + "truncated": false, + "block": 1, + "row": 483 + }, + { + "path": "lib/go/telemetry/collector/find_files.go", + "sha256": "4a6392108670cdc92109565399da1eca33dee71f21b602d8bff6e2355ef1cdb4", + "language": "Go", + "lines": 904, + "truncated": false, + "block": 1, + "row": 491 + }, + { + "path": "lib/go/telemetry/collector/flag.go", + "sha256": "957d4c56e707afb08aef1f1a798b475f88f34b7242f730774d62187e2f4e8062", + "language": "Go", + "lines": 59, + "truncated": false, + "block": 1, + "row": 464 + }, + { + "path": "lib/go/telemetry/collector/glibc.go", + "sha256": "930900ad96459406b58cd90f889ea711041e88de32e39ddc37568ed16041c83a", + "language": "Go", + "lines": 17, + "truncated": false, + "block": 1, + "row": 458 + }, + { + "path": "lib/go/telemetry/collector/group_count.go", + "sha256": "0b26f8dceb39169804a89586fec3f6e36ded2c80e78131abcbe73ef04e4ec04d", + "language": "Go", + "lines": 29, + "truncated": false, + "block": 1, + "row": 461 + }, + { + "path": "lib/go/telemetry/collector/perf.go", + "sha256": "3a974f85e571e8a6fb97e81239c626d9717028ef5b0689e1449151a216e3352e", + "language": "Go", + "lines": 121, + "truncated": false, + "block": 1, + "row": 477 + }, + { + "path": "lib/go/telemetry/collector/rlimit.go", + "sha256": "6a4adffc6317742b140d33de16c1451e0c212ef0a3aba628acc6a1c688c872cf", + "language": "Go", + "lines": 48, + "truncated": false, + "block": 1, + "row": 462 + }, + { + "path": "lib/go/telemetry/collector/special.go", + "sha256": "7b973262f3adb25dcda132ca0e7a880ea4fe7087ee83435a14abad7d4dd021e4", + "language": "Go", + "lines": 185, + "truncated": false, + "block": 1, + "row": 478 + }, + { + "path": "lib/go/telemetry/collector/value.go", + "sha256": "47647d48b3eba810d0f0517addffc8f30bbbc9778c228e141e44301a93a2bba8", + "language": "Go", + "lines": 90, + "truncated": false, + "block": 1, + "row": 472 + }, + { + "path": "lib/go/telemetry/config/bucket.go", + "sha256": "af1dd89ef6b64fc365a3de983c4aaeb74090259da77d5a1ea1b52d1afbc583a9", + "language": "Go", + "lines": 600, + "truncated": false, + "block": 1, + "row": 489 + }, + { + "path": "lib/go/telemetry/config/compile.go", + "sha256": "9c7a1427158fcd1ba4dd568048de21952b59b0c2b9037054d60e82bb9cd8ad6d", + "language": "Go", + "lines": 415, + "truncated": false, + "block": 1, + "row": 487 + }, + { + "path": "lib/go/telemetry/config/config.go", + "sha256": "e1d325aceb45388ce27fa72469c6a0cd839f1346c876e0315aab073989be652f", + "language": "Go", + "lines": 98, + "truncated": false, + "block": 1, + "row": 475 + }, + { + "path": "lib/go/telemetry/config/sources.go", + "sha256": "d0450eb7fac2007f1631ac73bb752868e01d0b804f3a8ad205c9284c11789655", + "language": "Go", + "lines": 269, + "truncated": false, + "block": 1, + "row": 482 + }, + { + "path": "lib/go/telemetry/config/support.go", + "sha256": "4a26429c139504dc525432c551df57c54a60e6eb18aa7defaf5bff0ca549f0bb", + "language": "Go", + "lines": 96, + "truncated": false, + "block": 1, + "row": 470 + }, + { + "path": "lib/go/telemetry/converter/convert.go", + "sha256": "e8a4e4449bcb05d9347d2eb45489f4eca19dc297d9864d796073f6751f729834", + "language": "Go", + "lines": 35, + "truncated": false, + "block": 1, + "row": 460 + }, + { + "path": "lib/go/telemetry/event/event.go", + "sha256": "70d1e466402509031602bc62b30e431a870eaa663ecbc47461a87f0055acaa6a", + "language": "Go", + "lines": 229, + "truncated": false, + "block": 1, + "row": 481 + }, + { + "path": "lib/go/telemetry/settings/cache.go", + "sha256": "835ee4e739945bccfd511b778fbf83f2eb5c8ff7a78d94c323ff17da8f0a1b24", + "language": "Go", + "lines": 86, + "truncated": false, + "block": 1, + "row": 469 + }, + { + "path": "lib/go/telemetry/settings/send.go", + "sha256": "74507888566a1fd3e96e92b74bdb5054901e2ab8e9a58b859b65369a6ad88ffc", + "language": "Go", + "lines": 337, + "truncated": false, + "block": 1, + "row": 484 + }, + { + "path": "lib/go/telemetry/settings/settings.go", + "sha256": "22ab77e24ded2fa8007068a8efacbb016c850d2bb1bb257adf9831edccccf9ac", + "language": "Go", + "lines": 548, + "truncated": false, + "block": 1, + "row": 490 + }, + { + "path": "lib/go/telemetry/settings/settings_linux.go", + "sha256": "67c77321609f560a447e30bcf7f2593084e019d68dfcf8969b67ca78cb5e07df", + "language": "Go", + "lines": 10, + "truncated": false, + "block": 1, + "row": 455 + }, + { + "path": "lib/go/telemetry/value_context/value_context.go", + "sha256": "48f2156457fdde52f5e256008276a81efa9a1123aef154002d4a97be1bd1ae97", + "language": "Go", + "lines": 131, + "truncated": false, + "block": 1, + "row": 476 + }, + { + "path": "lib/go/tenkit/fastq/constants.go", + "sha256": "2bc078e3b8407d571890d59e73ea89c074f9a7fcfa23dbff65c7fd402df0a5f3", + "language": "Go", + "lines": 10, + "truncated": false, + "block": 1, + "row": 456 + }, + { + "path": "lib/go/tenkit/fastq/io.go", + "sha256": "f4cba15762af8ae90abd46a1bae799494fd01e6ff34db29e7bf3280067254a52", + "language": "Go", + "lines": 442, + "truncated": false, + "block": 1, + "row": 486 + }, + { + "path": "lib/go/tenkit/fastq/utils.go", + "sha256": "9158fef8db339939deb99b7867ce65d147478d7a6bbf2a3356b13b0cdd067fa3", + "language": "Go", + "lines": 68, + "truncated": false, + "block": 1, + "row": 465 + }, + { + "path": "lib/python/cellranger/aggr/preprocessing.py", + "sha256": "2e2fcf2c38cce81d24af78fb0542ca2b9a2b9ca953ae2bff36eeb161236656ab", + "language": "Python", + "lines": 103, + "truncated": false, + "block": 1, + "row": 7149 + }, + { + "path": "lib/python/cellranger/altair_plot_utils.py", + "sha256": "22d5291222bfa456d449c8a498fa1cd863f4fac34da3b6df24c5bbe0dd2052fa", + "language": "Python", + "lines": 250, + "truncated": false, + "block": 1, + "row": 8271 + }, + { + "path": "lib/python/cellranger/altair_utils.py", + "sha256": "2d68def221293c4ef00fe90e0d569e8103c45b01e510db2b2b46c741109c094e", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 1, + "row": 7318 + }, + { + "path": "lib/python/cellranger/analysis/analysis_types.py", + "sha256": "61cf1e0f2071a6fbec01c4f197218bf2310ffef0a4176b934739556129bd0c88", + "language": "Python", + "lines": 148, + "truncated": false, + "block": 1, + "row": 7619 + }, + { + "path": "lib/python/cellranger/analysis/batch_correction.py", + "sha256": "16ec2c0bdb570a7580ae1215d2e5c42b4f173bd980d27b811d7f11c22f7d3e6f", + "language": "Python", + "lines": 200, + "truncated": false, + "block": 1, + "row": 8284 + }, + { + "path": "lib/python/cellranger/analysis/clustering.py", + "sha256": "fdb24db2d2116e68ebb68456ac0b07dfb70c08730b7a7453f06e48cc0c74ffe2", + "language": "Python", + "lines": 241, + "truncated": false, + "block": 1, + "row": 8267 + }, + { + "path": "lib/python/cellranger/analysis/combinatorics.py", + "sha256": "45825d8e5311923b2307cc255c8414b964fadba0125a7de586a029b879222b5b", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 1, + "row": 6703 + }, + { + "path": "lib/python/cellranger/analysis/constants.py", + "sha256": "267bca707575046ad14889ccf19fd1add5ddf19eb378a3163b55198e24a7db1f", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 1, + "row": 6591 + }, + { + "path": "lib/python/cellranger/analysis/diffexp.py", + "sha256": "0e12713f5fd514d0136c4a639f41a831ae875b879c9a8fce0b4f8b73878942a2", + "language": "Python", + "lines": 265, + "truncated": false, + "block": 1, + "row": 8440 + }, + { + "path": "lib/python/cellranger/analysis/graphclust.py", + "sha256": "37a08beafd98ec65a5eed0312b564c541e853f3ff036fb63d5cf54a878e9e6ff", + "language": "Python", + "lines": 331, + "truncated": false, + "block": 1, + "row": 8616 + }, + { + "path": "lib/python/cellranger/analysis/io.py", + "sha256": "695995b32e43166e9258d25db51b29fd45f6408f2e6208aed409a78414c03096", + "language": "Python", + "lines": 268, + "truncated": false, + "block": 1, + "row": 8410 + }, + { + "path": "lib/python/cellranger/analysis/irlb.py", + "sha256": "93614d6fc635811c794ab2ee364430f1046a93322283ffd58eb0667a3d934249", + "language": "Python", + "lines": 231, + "truncated": false, + "block": 1, + "row": 8147 + }, + { + "path": "lib/python/cellranger/analysis/jibes.py", + "sha256": "4dc82f2d8c035a8ef9f0f917a8b8bdeb384a12f3b90fe112985e82bcf69bae51", + "language": "Python", + "lines": 409, + "truncated": false, + "block": 1, + "row": 9042 + }, + { + "path": "lib/python/cellranger/analysis/jibes_constants.py", + "sha256": "6e957eb4ba4d4fa309d630e0ef3fe3f9818fc6ae656eff009a5c868e6de91f39", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 1, + "row": 5538 + }, + { + "path": "lib/python/cellranger/analysis/jibes_data.py", + "sha256": "c696810b5ceaaa3288a2513aed426fca82f6b6e4182b9eda4553ca40aa69589c", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 1, + "row": 6097 + }, + { + "path": "lib/python/cellranger/analysis/jibes_py.py", + "sha256": "5aaa8a4aa2fac9f661d61cd511d4f99d0c55943966e1ef0cc1e67594c2c5ebd4", + "language": "Python", + "lines": 322, + "truncated": false, + "block": 1, + "row": 8887 + }, + { + "path": "lib/python/cellranger/analysis/kmeans.py", + "sha256": "6b282d755bf1443d793154e7159b70d43c40d02ee8e5ec27cf3bf94b3f8d91e9", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 1, + "row": 6965 + }, + { + "path": "lib/python/cellranger/analysis/multigenome.py", + "sha256": "e0e4f2c2e31dbc5e58caf9ba6df603dc515bf1d8a4723f1c6be23851050834f4", + "language": "Python", + "lines": 424, + "truncated": false, + "block": 1, + "row": 9182 + }, + { + "path": "lib/python/cellranger/analysis/pca.py", + "sha256": "e8803dca79844f4cd5fd60d10c83c09c9006596a856e4bb8be9126446f804d8f", + "language": "Python", + "lines": 349, + "truncated": false, + "block": 1, + "row": 8983 + }, + { + "path": "lib/python/cellranger/analysis/singlegenome.py", + "sha256": "7322c81db31230ac4b56c6885d633af11a73c4570b4f141f2eda0cf28c1e62e1", + "language": "Python", + "lines": 355, + "truncated": false, + "block": 1, + "row": 9002 + }, + { + "path": "lib/python/cellranger/analysis/stats.py", + "sha256": "ff1f8feda9a12aae95348ca50d395fab197a8ff21cbcb01a8d7138d5ba61409e", + "language": "Python", + "lines": 103, + "truncated": false, + "block": 1, + "row": 7135 + }, + { + "path": "lib/python/cellranger/bam_constants.py", + "sha256": "ea55eaa4f7bf94455dc34400fdbf5c4c9dd41de228b3765cbd894959c78f824a", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 1, + "row": 5623 + }, + { + "path": "lib/python/cellranger/barcodes/utils.py", + "sha256": "ca8700c6e4976aded3fe0da147de7e2215a9a864cec6e4df0756e143f7a34a84", + "language": "Python", + "lines": 233, + "truncated": false, + "block": 1, + "row": 7871 + }, + { + "path": "lib/python/cellranger/cell_barcodes.py", + "sha256": "ac20d925eca2659440db64790ecb3939552f625774bb50dc7c1115b92f728b74", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 1, + "row": 6498 + }, + { + "path": "lib/python/cellranger/cell_calling.py", + "sha256": "6d30916ec45a3bc47f7abd55e2b66fe86c6020a0fc0965e525fbc70d07c7470e", + "language": "Python", + "lines": 383, + "truncated": false, + "block": 1, + "row": 9011 + }, + { + "path": "lib/python/cellranger/cell_calling_helpers.py", + "sha256": "1e65f1c7cc50c66cd3443fda02f4ae0860c624be1be1e2c30c22cf2b0dca272c", + "language": "Python", + "lines": 1317, + "truncated": false, + "block": 1, + "row": 9795 + }, + { + "path": "lib/python/cellranger/cell_calling_stats.py", + "sha256": "7dd3cfe72010d61a5957a895e0cd1cecaacf101b67b599171ea515586b043596", + "language": "Python", + "lines": 208, + "truncated": false, + "block": 1, + "row": 8292 + }, + { + "path": "lib/python/cellranger/cell_typing/azimuth/annotate.py", + "sha256": "34ade6b68670c0585d2102c43726a874b7016a8c01ae699e34eacf444057d435", + "language": "Python", + "lines": 588, + "truncated": false, + "block": 1, + "row": 9423 + }, + { + "path": "lib/python/cellranger/cell_typing/azimuth/annotate_tools.py", + "sha256": "79d3f46e818ac2d77643a24a2d4bd6c2d6193d73bf322ff6f3a1359d432453b2", + "language": "Python", + "lines": 1591, + "truncated": false, + "block": 1, + "row": 9810 + }, + { + "path": "lib/python/cellranger/cell_typing/azimuth/azimuth_ref_paths.py", + "sha256": "4a2f485bd435cc3705810ab428a7531261349836fd85e1dc174f077280c7163d", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 1, + "row": 6233 + }, + { + "path": "lib/python/cellranger/cell_typing/azimuth/azimuth_utils.py", + "sha256": "43d22a42b1361f9605253d274f0e960f93da85ebe07d530df8055c1c3210304b", + "language": "Python", + "lines": 668, + "truncated": false, + "block": 1, + "row": 9548 + }, + { + "path": "lib/python/cellranger/cell_typing/broad_tenx/cas_metrics.py", + "sha256": "eb331b95416e1d715417ebb73999d4829f32f8c9c02273919308f5ad434aee3e", + "language": "Python", + "lines": 484, + "truncated": false, + "block": 1, + "row": 9231 + }, + { + "path": "lib/python/cellranger/cell_typing/broad_tenx/cas_postprocessing.py", + "sha256": "18965f957c46522967331165999ad7120da91a3cacc6bf25e7c8403171209059", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 1, + "row": 7247 + }, + { + "path": "lib/python/cellranger/cell_typing/broad_tenx/cloud_cas_client.py", + "sha256": "791b44effa2cdf5491b5c755c79d6dd2a31038d44997955b61b20fec57a7bfc6", + "language": "Python", + "lines": 747, + "truncated": false, + "block": 1, + "row": 9487 + }, + { + "path": "lib/python/cellranger/cell_typing/broad_tenx/cloud_cas_utils.py", + "sha256": "b11cf4005a231c971129174747ec27447e9d50dd0483e109ed5560e59ee53996", + "language": "Python", + "lines": 523, + "truncated": false, + "block": 1, + "row": 9369 + }, + { + "path": "lib/python/cellranger/cell_typing/broad_tenx/common.py", + "sha256": "61cbb8074d5ecc2cb1d5bfe16b02451649d52bf2f4f1b70c39108a2837b76c31", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 1, + "row": 7007 + }, + { + "path": "lib/python/cellranger/cell_typing/common_cell_typing.py", + "sha256": "caa3795176b1eaae6f7f50df03085f475040c9329dab72181accdb7eb39797f6", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 1, + "row": 6728 + }, + { + "path": "lib/python/cellranger/chemistry.py", + "sha256": "0ecb81d2f76984367d463aabcac43326bf8fa1b29f09612cc243118c525bd81a", + "language": "Python", + "lines": 191, + "truncated": false, + "block": 1, + "row": 7756 + }, + { + "path": "lib/python/cellranger/cigar.py", + "sha256": "76077483f628d7474662a875c6c7f37b5aa1d91524e6dba6fa038d9fb7d48ad6", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 1, + "row": 5904 + }, + { + "path": "lib/python/cellranger/constants.py", + "sha256": "e4040184b2b4e2653146d1d0d7f4ac0acc8809585028fd8079859ab60962b9db", + "language": "Python", + "lines": 182, + "truncated": false, + "block": 1, + "row": 7730 + }, + { + "path": "lib/python/cellranger/cr_io.py", + "sha256": "e411f4694461f5ae986c3d9cabe6fa2c5e3ee43231110b1ca77dc0b0cc383166", + "language": "Python", + "lines": 321, + "truncated": false, + "block": 1, + "row": 8515 + }, + { + "path": "lib/python/cellranger/csv_io.py", + "sha256": "722b31ced53cb532936a9bf7db2ed267b4d7fe49d2e4c0ca0493cd45c4e9d389", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 1, + "row": 6059 + }, + { + "path": "lib/python/cellranger/csv_utils.py", + "sha256": "f80b86de65bec65368f55f83a6226a5e9e4efc5b30dbdeb572e6fe856106d8fc", + "language": "Python", + "lines": 240, + "truncated": false, + "block": 1, + "row": 8344 + }, + { + "path": "lib/python/cellranger/env.py", + "sha256": "5e0c1c1686f91aa66f1bc67f1439db310382e469cc57e546b654e795aaa85260", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 1, + "row": 5267 + }, + { + "path": "lib/python/cellranger/feature/antibody/analysis.py", + "sha256": "925e0f9e230a184517467a6e73255754aca77ed0293094671b43553c177f0d10", + "language": "Python", + "lines": 186, + "truncated": false, + "block": 1, + "row": 8157 + }, + { + "path": "lib/python/cellranger/feature/antigen/specificity.py", + "sha256": "2cfaac0610720403ad6b514067dd4b1e31b68f7d6c834db78021ddbeddb1ce32", + "language": "Python", + "lines": 808, + "truncated": false, + "block": 1, + "row": 9647 + }, + { + "path": "lib/python/cellranger/feature/crispr/measure_perturbations.py", + "sha256": "ac073b3467de1ff94b1df61df94b45392f6929862de8b39ce6300f717a41aa47", + "language": "Python", + "lines": 803, + "truncated": false, + "block": 1, + "row": 9644 + }, + { + "path": "lib/python/cellranger/feature/crispr/protospacer_calling.py", + "sha256": "fab37ec9a665d4679d53c60415e514dc819c72ed96db2b17247b7af1cde6dad3", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5417 + }, + { + "path": "lib/python/cellranger/feature/feature_assigner.py", + "sha256": "c2a87306222f16664703c4ec0fdef9d59b45b02530abc1ed7fc8ecef3f6edcd8", + "language": "Python", + "lines": 1419, + "truncated": false, + "block": 1, + "row": 9813 + }, + { + "path": "lib/python/cellranger/feature/feature_assignments.py", + "sha256": "c926fc2a57357e6d1bbb7e08eb196e32ad5d2af97d14620f41d0e7ffef247d59", + "language": "Python", + "lines": 483, + "truncated": false, + "block": 1, + "row": 9179 + }, + { + "path": "lib/python/cellranger/feature/jibes_tag_assigner.py", + "sha256": "9a31255306173a7ec0a10d98782796a4a3238b3b665067725cb689ad4546b9eb", + "language": "Python", + "lines": 426, + "truncated": false, + "block": 1, + "row": 9153 + }, + { + "path": "lib/python/cellranger/feature/multiplexing/infer_throughput.py", + "sha256": "6717dd54b83564ee91dfc78052ec4bf1fb7fa63b719efa398582d9e40c67b2a5", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 1, + "row": 6201 + }, + { + "path": "lib/python/cellranger/feature/multiplexing/metrics_utils.py", + "sha256": "e6389af6f4654a87481e428ef4d8aaadb9c1eb6128fac74a3808170e16c41416", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 1, + "row": 6729 + }, + { + "path": "lib/python/cellranger/feature/throughputs.py", + "sha256": "8babfaff0134188769290d7a976b678a81d4af06c4108e01bf640dbab27a8b54", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 1, + "row": 5485 + }, + { + "path": "lib/python/cellranger/feature/utils.py", + "sha256": "9f3939839a92351086b726ad12718653c7915acf9769f1cd32a55a2868e553a6", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 1, + "row": 6589 + }, + { + "path": "lib/python/cellranger/feature_ref.py", + "sha256": "e1b446e93626041c3b3c5a0a9c7c2e4e8a6a1c6a113c77748d8de14384ac5e84", + "language": "Python", + "lines": 737, + "truncated": false, + "block": 1, + "row": 9577 + }, + { + "path": "lib/python/cellranger/h5_constants.py", + "sha256": "997a70a3072a1d03651a45a3bd09a935fa71feed8097a8a28b46acadcff990fc", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 1, + "row": 6143 + }, + { + "path": "lib/python/cellranger/hdf5.py", + "sha256": "58577b375f3ff7f5b9d83c27815439bd6ffce2c4a6ee027caeb6c9213bae4553", + "language": "Python", + "lines": 238, + "truncated": false, + "block": 1, + "row": 8109 + }, + { + "path": "lib/python/cellranger/library_constants.py", + "sha256": "ccd1d127fc00cdbd9aa53892b5d566f5da873c4759e2fb66dd4f622ec08abb5e", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 1, + "row": 5256 + }, + { + "path": "lib/python/cellranger/logperf.py", + "sha256": "7de0ee9e3a9e685c0ab6a45144006cc5599da2bdedb51fefca3eac485c887fdf", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 1, + "row": 6121 + }, + { + "path": "lib/python/cellranger/matrix.py", + "sha256": "f90d3448a73cc92453c5472a1bd69bb0712067c8f6c5d7f34cd5c6c4e7d04063", + "language": "Python", + "lines": 2061, + "truncated": false, + "block": 1, + "row": 9847 + }, + { + "path": "lib/python/cellranger/metrics.py", + "sha256": "7871da8582f726062950f8fc955e95fcf53b196b8f81ace723c12ba0b0ff7536", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 1, + "row": 5946 + }, + { + "path": "lib/python/cellranger/molecule_counter.py", + "sha256": "13ec524d8f73c7579a1c7d575d0f94c0ce725dc53e6159666a7635539689c7a7", + "language": "Python", + "lines": 1301, + "truncated": false, + "block": 1, + "row": 9763 + }, + { + "path": "lib/python/cellranger/molecule_counter_converter.py", + "sha256": "35bf9c3e1e7afe607a91c9205a78b48810d10889c3d01ccbf311b042e04a278d", + "language": "Python", + "lines": 333, + "truncated": false, + "block": 1, + "row": 8836 + }, + { + "path": "lib/python/cellranger/molecule_counter_extensions.py", + "sha256": "305e054ed48729c309f6cbda50d55ddfde5e16721ab63c5520d06b79fa448eb6", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 1, + "row": 7185 + }, + { + "path": "lib/python/cellranger/mro_types/structs.py", + "sha256": "52c371c92bc4581eae84a06b74df5e7d81e8a2b0e886b3fd15165f000e65bf16", + "language": "Python", + "lines": 515, + "truncated": false, + "block": 1, + "row": 8660 + }, + { + "path": "lib/python/cellranger/mtx_to_matrix_converter.py", + "sha256": "8fb6f8027bd4f4774f41f120a1d60d2324b74698f51d453d485e225c5021c434", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 1, + "row": 6810 + }, + { + "path": "lib/python/cellranger/multi/barcode_rank_plots.py", + "sha256": "b53a80d16071fbb8c97b0dfd7ee7793134fe141b957813869b9259a7f8a70c9b", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 1, + "row": 6627 + }, + { + "path": "lib/python/cellranger/multi/build_per_sample_outs.py", + "sha256": "437e227c9cf4be012f5c330e6efd8def95c17842e5a413e20e932b1c20270b26", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 1, + "row": 6608 + }, + { + "path": "lib/python/cellranger/pandas_utils.py", + "sha256": "a2c6e6061ddec58b6175877c637a3fc1962b31ddd6fd6922ab9b08707f302cd5", + "language": "Python", + "lines": 797, + "truncated": false, + "block": 1, + "row": 9631 + }, + { + "path": "lib/python/cellranger/preflight.py", + "sha256": "2cabc36a5255ab8483723ffdbd3c3b8c04d2a40e8436e4a5c895068d7102a885", + "language": "Python", + "lines": 672, + "truncated": false, + "block": 1, + "row": 9529 + }, + { + "path": "lib/python/cellranger/products.py", + "sha256": "26ea098013a2f89b66b855a03e9aabccb52e4b0525f668241d18f2f1e5c3078a", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 1, + "row": 5861 + }, + { + "path": "lib/python/cellranger/read_level_multiplexing.py", + "sha256": "e1dd60a87972a2d52b53948f0d60e855f2628b134ddaf71e91bf31c0a31457f9", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 1, + "row": 6026 + }, + { + "path": "lib/python/cellranger/reference.py", + "sha256": "520da1736e3966b306a8602c2f66c089e0ff236b636a7d5f17789f14cddd49e1", + "language": "Python", + "lines": 751, + "truncated": false, + "block": 1, + "row": 9574 + }, + { + "path": "lib/python/cellranger/reference_builder.py", + "sha256": "8cb8ed77985cf8aefdb3aadd508244d031343d1d5d8db7e5d966101aec2b5a1d", + "language": "Python", + "lines": 470, + "truncated": false, + "block": 1, + "row": 9274 + }, + { + "path": "lib/python/cellranger/reference_hash.py", + "sha256": "280228ae72474501d5e0fab131c1fca52efc1ff1ff9e069188f74e779f26367c", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 1, + "row": 5332 + }, + { + "path": "lib/python/cellranger/reference_paths.py", + "sha256": "f2e6b41c333311fff689783de7dcac03f071522abd902b0857676a52af080013", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 1, + "row": 7195 + }, + { + "path": "lib/python/cellranger/rna/feature_ref.py", + "sha256": "5f4a149a6fbf95eb6d62e76c985b05dcc9bd0897faa11fc2bb50d045f44266b1", + "language": "Python", + "lines": 627, + "truncated": false, + "block": 1, + "row": 9500 + }, + { + "path": "lib/python/cellranger/rna/library.py", + "sha256": "323f3ef2dfd013a62e6da0bd01a5ae1edb172773378f4b96d81e70f91189332f", + "language": "Python", + "lines": 197, + "truncated": false, + "block": 1, + "row": 7676 + }, + { + "path": "lib/python/cellranger/rna/matrix.py", + "sha256": "21d8de30a4b002e3bfd63bb836540213ae68fcca4adc5b55e2e33d5cd9126454", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 1, + "row": 5508 + }, + { + "path": "lib/python/cellranger/rna/refactor_report_matrix.py", + "sha256": "d1b984c9558284ffd9baf1420497f0062ba3b91bbfc5594f1f9a47ea95edab91", + "language": "Python", + "lines": 149, + "truncated": false, + "block": 1, + "row": 7436 + }, + { + "path": "lib/python/cellranger/rna/report_matrix.py", + "sha256": "bb040af37be8c811bd2e9bdf606592c3e2ac77c2f5c40da1e601faed69753bbd", + "language": "Python", + "lines": 510, + "truncated": false, + "block": 1, + "row": 9317 + }, + { + "path": "lib/python/cellranger/sample_def.py", + "sha256": "c42a783464d34e63dfda64474a90056e361eeb0c0985df0d0e55ca40073e8504", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 1, + "row": 6803 + }, + { + "path": "lib/python/cellranger/segment.py", + "sha256": "ba0c616efd175eca7b67d559785096307286c9ae761c1019749e73bd59e178fc", + "language": "Python", + "lines": 288, + "truncated": false, + "block": 1, + "row": 8198 + }, + { + "path": "lib/python/cellranger/sgt.py", + "sha256": "e4dfb4c2c90dfa776cdf60b252d362d9d2a6c8c4e01c2459c26591a54fd5dd53", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 1, + "row": 7336 + }, + { + "path": "lib/python/cellranger/sparse.py", + "sha256": "4b11a46ecdd544c22089db92a342de99cfaf72d4ebd9a168dc6671460b55cb19", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 1, + "row": 7291 + }, + { + "path": "lib/python/cellranger/spatial/data_utils.py", + "sha256": "9d6a6f53cdedcb160f80d0b1acfff5d16f8e85ad3c18b69c335891d780f4fdb4", + "language": "Python", + "lines": 289, + "truncated": false, + "block": 1, + "row": 8419 + }, + { + "path": "lib/python/cellranger/spatial/hd_cs_websummary_color_utils.py", + "sha256": "ddff54521437f332982ad700ea8b55c6ad40d3feb5566d93bcf2243ddf6589da", + "language": "Python", + "lines": 357, + "truncated": false, + "block": 1, + "row": 8686 + }, + { + "path": "lib/python/cellranger/spatial/image.py", + "sha256": "692a88d2278b45c9987b719bf1b2a162058f79183758b129413d8930179091b3", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 1, + "row": 6867 + }, + { + "path": "lib/python/cellranger/spatial/image_util.py", + "sha256": "eef21728699e975d495e219f96302a6bd6c79e9a762b276b804c06118f9913ee", + "language": "Python", + "lines": 545, + "truncated": false, + "block": 1, + "row": 9318 + }, + { + "path": "lib/python/cellranger/spatial/multi_layered_images.py", + "sha256": "5212e89552207da24f1d1df3a8accfc70c610d66f4f6b838ae29591ceb09f9b6", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 1, + "row": 6654 + }, + { + "path": "lib/python/cellranger/spatial/pipeline_mode.py", + "sha256": "6fef288222527d31354d25bc28f7e7b0e0ed8aaeabeb573dd9d079775db7c875", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 1, + "row": 6269 + }, + { + "path": "lib/python/cellranger/spatial/segmentation_constants.py", + "sha256": "b90d95ed5dab62d5824dd859f95b49e5c32b94b548b920fe0cf6e6adb8d29ae8", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 1, + "row": 6148 + }, + { + "path": "lib/python/cellranger/spatial/spatial_aggr_files.py", + "sha256": "f35b63653ea10e67009e3d608bc0a47fdb5f74ac6a316f801456eca3c8d5fe59", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 1, + "row": 5901 + }, + { + "path": "lib/python/cellranger/spatial/tiffer.py", + "sha256": "e72f38db2fe350f3383d78e28c7a82ea8a27e02a0ecddf2a5f18997d9f16be55", + "language": "Python", + "lines": 215, + "truncated": false, + "block": 1, + "row": 8110 + }, + { + "path": "lib/python/cellranger/spatial/webp_image_utils.py", + "sha256": "5abb97e022964af25b942d2b7bc3b7a9e38696d04fef8925f7e2256165ae0f39", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 1, + "row": 6084 + }, + { + "path": "lib/python/cellranger/subsample.py", + "sha256": "692ed4b532d0fa2262d5e51fc36dddb00f53287c0f15d93ad6406d617bc1c65b", + "language": "Python", + "lines": 910, + "truncated": false, + "block": 1, + "row": 9680 + }, + { + "path": "lib/python/cellranger/targeted/gmm.py", + "sha256": "91792bc1d8e5016a61a4e0f20116be498689e2b5f463ce6bea5295cfbfacacff", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 1, + "row": 7890 + }, + { + "path": "lib/python/cellranger/targeted/rtl_multiplexing.py", + "sha256": "43b5b122f818902a6e6e4d1dc99de12111ca9ac1cad7519a95df99dda51badbf", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 1, + "row": 6833 + }, + { + "path": "lib/python/cellranger/targeted/simple_utils.py", + "sha256": "31d4ba306c48eabbb3d827ca5ed6c6eb119ac0406a8cf891a527d5a16736af17", + "language": "Python", + "lines": 441, + "truncated": false, + "block": 1, + "row": 9281 + }, + { + "path": "lib/python/cellranger/targeted/targeted_constants.py", + "sha256": "78efa39e675f9ca7dd38b9ff1caf7f7d182b951f0a64d1c36afe0b94fc706395", + "language": "Python", + "lines": 103, + "truncated": false, + "block": 1, + "row": 6897 + }, + { + "path": "lib/python/cellranger/targeted/targeted_spatial.py", + "sha256": "c6e3a1da922435f338eb7a595671f4faf6db023dd2142b665bdc04f89d4fee51", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 1, + "row": 5147 + }, + { + "path": "lib/python/cellranger/targeted/utils.py", + "sha256": "5fc34d2f104530d141937468bbe7d4d7593e080f4e12a07c55733c8e0f4fca3f", + "language": "Python", + "lines": 155, + "truncated": false, + "block": 1, + "row": 7537 + }, + { + "path": "lib/python/cellranger/utils.py", + "sha256": "dae6b7ef03fd332fba5d15c9b5b003de373dc18e0eb3ae55fa605fe7722e580c", + "language": "Python", + "lines": 388, + "truncated": false, + "block": 1, + "row": 8705 + }, + { + "path": "lib/python/cellranger/vdj/annotations.py", + "sha256": "a836930d2fa30bdebb0323d8f62e8ce0f215efef5bbf0bf4368d3143ec3640b1", + "language": "Python", + "lines": 1883, + "truncated": false, + "block": 1, + "row": 9832 + }, + { + "path": "lib/python/cellranger/vdj/chain_types.py", + "sha256": "b58b806e1f448ff3e01bb9562373300ab6e340c20b62f45c7c2734a68d2c4a3d", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 1, + "row": 5783 + }, + { + "path": "lib/python/cellranger/vdj/clonotype.py", + "sha256": "0fc2802fb7ecf76cbf200307de173954c009e836edb97dc472899d6e856ca8f3", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 1, + "row": 5792 + }, + { + "path": "lib/python/cellranger/vdj/constants.py", + "sha256": "02ae4f425b11294df6a8cdf4e9320a325a0a015e3e3dbb57bd77fd52fee3c8ee", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 1, + "row": 7084 + }, + { + "path": "lib/python/cellranger/vdj/preflight.py", + "sha256": "a38f4fac2ab6f247a9c4c6eb3b471c4354a0870a49755d8477dc260b2ef0073c", + "language": "Python", + "lines": 159, + "truncated": false, + "block": 1, + "row": 7848 + }, + { + "path": "lib/python/cellranger/vdj/reference.py", + "sha256": "c28fba88f9d8bf9736676a1c0d340db5870bcbf16ecb859ae623dd274fa95d02", + "language": "Python", + "lines": 410, + "truncated": false, + "block": 1, + "row": 8885 + }, + { + "path": "lib/python/cellranger/vdj/reference_maker.py", + "sha256": "f30ff521b0ddb06679d131a64189ac0889d2a89bc247d4cd4dc722969bbac44e", + "language": "Python", + "lines": 336, + "truncated": false, + "block": 1, + "row": 8799 + }, + { + "path": "lib/python/cellranger/vdj/report.py", + "sha256": "2d759adb90abcd46c67fc06a40bc69be67f82ba8e16d4c6bb8bf3ec0e8b55d98", + "language": "Python", + "lines": 831, + "truncated": false, + "block": 1, + "row": 9713 + }, + { + "path": "lib/python/cellranger/vdj/utils.py", + "sha256": "66d6849bb0fe961263bd972cd250818eca14a8a38d02700c19750aa18e7a7426", + "language": "Python", + "lines": 188, + "truncated": false, + "block": 1, + "row": 7655 + }, + { + "path": "lib/python/cellranger/version.py", + "sha256": "2318caeda798ec8cc56097fbe4b22402454c333a5aa6544a3f0e553cfbab78e3", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 1, + "row": 5752 + }, + { + "path": "lib/python/cellranger/webshim/common.py", + "sha256": "14ccb034756a16ee74febbf4347f7bfcf8e80208c7a9d3b896e25ce48f550e79", + "language": "Python", + "lines": 1551, + "truncated": false, + "block": 1, + "row": 9784 + }, + { + "path": "lib/python/cellranger/webshim/constants/gex.py", + "sha256": "989031f5fc09a016b81a26b335ff7177db33a3670c6915826484eccccb6eb7d1", + "language": "Python", + "lines": 1548, + "truncated": false, + "block": 1, + "row": 9836 + }, + { + "path": "lib/python/cellranger/webshim/constants/shared.py", + "sha256": "3d9d06bbb78c4ad6a17c1db3dd4d09ad1d67e6f1fbdf9b1d1eb94ceaa6d3b556", + "language": "Python", + "lines": 149, + "truncated": false, + "block": 1, + "row": 6847 + }, + { + "path": "lib/python/cellranger/webshim/constants/vdj.py", + "sha256": "0c627a4b2dfa00d290c1c6f7dc92f04e53359ab320437c6e0ab242ab8959494f", + "language": "Python", + "lines": 479, + "truncated": false, + "block": 1, + "row": 9375 + }, + { + "path": "lib/python/cellranger/webshim/data.py", + "sha256": "685433ddfa12b37b66d3e0d741c1d9837bce3037b3b1b8d0f185246ba98c8018", + "language": "Python", + "lines": 490, + "truncated": false, + "block": 1, + "row": 9221 + }, + { + "path": "lib/python/cellranger/webshim/jibes_plotting.py", + "sha256": "179ce1f7048ed291c2212c3f31fc6cb6252ab74c21d8ce9e3a3a0533bbc6e94c", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 1, + "row": 6848 + }, + { + "path": "lib/python/cellranger/webshim/jibes_web.py", + "sha256": "d782a83ea16010117af68617bfbeb16a3c65fc2ba439d61c48f7a00c15feaeae", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 1, + "row": 7215 + }, + { + "path": "lib/python/cellranger/websummary/aggr_websummary_builder.py", + "sha256": "be5e884a7078c7ead8e7c12283a0cd5c69601a5d5c64dacae0dd5c713a4b7d5d", + "language": "Python", + "lines": 203, + "truncated": false, + "block": 1, + "row": 8115 + }, + { + "path": "lib/python/cellranger/websummary/analysis_tab_aux.py", + "sha256": "7a1702df64f2b46d2b7474d33dc2f2b2ce50f3f8d594dce5898193aa9e3269da", + "language": "Python", + "lines": 814, + "truncated": false, + "block": 1, + "row": 9649 + }, + { + "path": "lib/python/cellranger/websummary/analysis_tab_core.py", + "sha256": "c25dd78835a74e8d3409f33e52f7a7b998fab9ffb4873302d81e75fa2de312f1", + "language": "Python", + "lines": 554, + "truncated": false, + "block": 1, + "row": 9390 + }, + { + "path": "lib/python/cellranger/websummary/cell_barcode_dataset.py", + "sha256": "02ae9290e19cc468fc0c8bb12c5af88706e98201f5d2f373a4f1c2c2b809c204", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 1, + "row": 6014 + }, + { + "path": "lib/python/cellranger/websummary/helpers.py", + "sha256": "d09dc2fe7ae29191bc249f6e520256aae89b322ed5f4520652b2ddbe0ca4f0e7", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 1, + "row": 5361 + }, + { + "path": "lib/python/cellranger/websummary/histograms.py", + "sha256": "4c7a45b976a5866e0222596fc84b2a5f8e6324867027b96287a6fa5e40cdba72", + "language": "Python", + "lines": 243, + "truncated": false, + "block": 1, + "row": 8422 + }, + { + "path": "lib/python/cellranger/websummary/isotypes.py", + "sha256": "c96caf6378efa5f5c3992d9037d87b1187cebf0ac9929efe44b74442bd90bcc4", + "language": "Python", + "lines": 552, + "truncated": false, + "block": 1, + "row": 9421 + }, + { + "path": "lib/python/cellranger/websummary/metrics.py", + "sha256": "48545c93dbdda16b904ef7b394755171937919a917a6a66aceeeaee23dd449a2", + "language": "Python", + "lines": 727, + "truncated": false, + "block": 1, + "row": 9542 + }, + { + "path": "lib/python/cellranger/websummary/numeric_converters.py", + "sha256": "d0b1a0e50eeee2b59244fd4258f458cbd594a4ce886717eca0f6981595f0b348", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 1, + "row": 5769 + }, + { + "path": "lib/python/cellranger/websummary/plotly_tools.py", + "sha256": "7d83aa980112484df2a998acc86de361519ebf17789f3a1cc9e34dbb04607868", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 1, + "row": 6186 + }, + { + "path": "lib/python/cellranger/websummary/react_components.py", + "sha256": "80f793ab92664e4731d0fbcdf4326b5a9fd80379231bb70e853fb29bf081ae7a", + "language": "Python", + "lines": 758, + "truncated": false, + "block": 1, + "row": 9523 + }, + { + "path": "lib/python/cellranger/websummary/react_summarize.py", + "sha256": "5a01551901323d4bc9c8afb0833bb8d1e4642a3225aaa8d85378e9528d7450f1", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 1, + "row": 5683 + }, + { + "path": "lib/python/cellranger/websummary/sample_properties.py", + "sha256": "d88a723a7cd55fab3a2d2722898668781f4163e0b807b5cd0f64d4bbba53add9", + "language": "Python", + "lines": 375, + "truncated": false, + "block": 1, + "row": 8865 + }, + { + "path": "lib/python/cellranger/websummary/spatial_utils.py", + "sha256": "ffae5dfc0c935e61f6516798b488c4d77bf9647a3baf6c374e93e5b1c52ff89d", + "language": "Python", + "lines": 307, + "truncated": false, + "block": 1, + "row": 8584 + }, + { + "path": "lib/python/cellranger/websummary/summary_tab.py", + "sha256": "6ca28c3b7d3dd730ad04b6a68f4e8283e178a2e9b97467b05e7c042fb8b5b6bd", + "language": "Python", + "lines": 1237, + "truncated": false, + "block": 1, + "row": 9765 + }, + { + "path": "lib/python/cellranger/websummary/treemaps.py", + "sha256": "045b5fbd03163466d165c20eba0d329228fbbfbed176d5ba42f7b38e986cdfb1", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 1, + "row": 8031 + }, + { + "path": "lib/python/cellranger/websummary/vdj.py", + "sha256": "8a19b878a12fb6017cd5b7a2013499acd817ab41f6e220d2ac055b53c87c8571", + "language": "Python", + "lines": 543, + "truncated": false, + "block": 1, + "row": 9266 + }, + { + "path": "lib/python/cellranger/websummary/violin_plots.py", + "sha256": "62a18d219ec357c86dae7a3caf05dfce61ba042ae61f0f94cec8a0a1a58b63f9", + "language": "Python", + "lines": 389, + "truncated": false, + "block": 1, + "row": 8867 + }, + { + "path": "lib/python/cellranger/websummary/web_summary_builder.py", + "sha256": "ce2eb5b2a4a5bae9fb705df2e9be40cb396761e41d3d30e5dc3cf4c54084a133", + "language": "Python", + "lines": 552, + "truncated": false, + "block": 1, + "row": 9249 + }, + { + "path": "lib/python/cellranger/wrapped_tables.py", + "sha256": "d95579bbdbbf01cfd5baab6284590d0887b53dc377d3e8ee0453ccb154b142a8", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 1, + "row": 6254 + }, + { + "path": "lib/python/common/pyfasta.py", + "sha256": "5cc3931931a19a8fc1ea8d306104b80316a1541da500440906718b30804eaf0a", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 1, + "row": 6031 + }, + { + "path": "lib/python/tenkit/__init__.py", + "sha256": "3de1d236e27f6597509ec2bfbbf2b8161d65e3fe50b8ed1837a44ed85d3e34ad", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 1, + "row": 5057 + }, + { + "path": "lib/python/tenkit/bcl.py", + "sha256": "eb1c66bd3314473f8b906a9dd394caea496cee9dd7c4883d78710b52677ccc38", + "language": "Python", + "lines": 614, + "truncated": false, + "block": 1, + "row": 9477 + }, + { + "path": "lib/python/tenkit/cache.py", + "sha256": "5df79b89329a63575e2bde43788b9f1d131e3ee537503975ee576a208092f263", + "language": "Python", + "lines": 103, + "truncated": false, + "block": 1, + "row": 6840 + }, + { + "path": "lib/python/tenkit/constants.py", + "sha256": "fd79265c40a9da40ade71d1d671ff2b86a5586db1bde497e7f158d789c9836a7", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 1, + "row": 5959 + }, + { + "path": "lib/python/tenkit/cpu_support.c", + "sha256": "94031d9f738650bb96045163d54516788aba64e31a487d4f083e0bcca75458de", + "language": "C", + "lines": 14, + "truncated": false, + "block": 1, + "row": 5 + }, + { + "path": "lib/python/tenkit/fasta.py", + "sha256": "bd21bcea05b9a5ef87ac70e24edf55e8f775c9be009a126bf77ced36c548e33e", + "language": "Python", + "lines": 652, + "truncated": false, + "block": 1, + "row": 9404 + }, + { + "path": "lib/python/tenkit/lane.py", + "sha256": "b37df4710dd48850da1fa3756768b7560de77333a0b996c783c4a178744c8652", + "language": "Python", + "lines": 241, + "truncated": false, + "block": 1, + "row": 8197 + }, + { + "path": "lib/python/tenkit/log_subprocess.py", + "sha256": "c2d6e0e446e32d29144076ef4128c2815b46fbc4e5ac5fb4542b1bd8256c3540", + "language": "Python", + "lines": 314, + "truncated": false, + "block": 1, + "row": 8622 + }, + { + "path": "lib/python/tenkit/pandas/__init__.py", + "sha256": "5d87cd728661d8192b8f753855842dba7228d2bd7b37f73e250f3ffbb82a545c", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 1, + "row": 5410 + }, + { + "path": "lib/python/tenkit/preflight.py", + "sha256": "da99d9f77efbe18f13b63dd91bdda084083a2f6f9483281b6deb645919280b8a", + "language": "Python", + "lines": 606, + "truncated": false, + "block": 1, + "row": 9360 + }, + { + "path": "lib/python/tenkit/reference.py", + "sha256": "01797a2abfbf87c4feca2bf66f5a9dc425e366d17e0c79dd7ed3e72ed513ada4", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 1, + "row": 6000 + }, + { + "path": "lib/python/tenkit/safe_json.py", + "sha256": "20f681c847a2aea5a16a66a90e18cd04539e374cc846f48cf3ccb075fc397dbc", + "language": "Python", + "lines": 383, + "truncated": false, + "block": 1, + "row": 8876 + }, + { + "path": "lib/python/tenkit/sample_index.py", + "sha256": "e02ca93e28b7c7934ce1b778ad4e9605a4893bbac0c72167c86a1ca6840c57aa", + "language": "Python", + "lines": 5032, + "truncated": true, + "block": 1, + "row": 9884 + }, + { + "path": "lib/python/tenkit/samplesheet.py", + "sha256": "6e722ad5d39ff74132e72b80aab1cadebaaf575db99095ffba8d25b23ac95cc3", + "language": "Python", + "lines": 1068, + "truncated": false, + "block": 1, + "row": 9686 + }, + { + "path": "lib/python/tenkit/seq.py", + "sha256": "24992f2d94ecc250c7e96afdcb37e611bf9698b12b1baa9c27a0c0c22e134748", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 1, + "row": 6238 + }, + { + "path": "lib/python/tenkit/stats.py", + "sha256": "3175c37892d75693222805195aef46a587a84ad35c9f9be8ed93cbfdc2d07a0c", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 1, + "row": 5632 + }, + { + "path": "lib/python/websummary/summarize.py", + "sha256": "b6d26bd4228e28e0033e29187bdf715da5745f5b581056052711967aba266f1c", + "language": "Python", + "lines": 192, + "truncated": false, + "block": 1, + "row": 8100 + }, + { + "path": "lib/rust/amino/src/lib.rs", + "sha256": "511bed81441ebbb0e58f34939d4065bc3914a4b07d7433c5dec904026cb38f8a", + "language": "Rust", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10776 + }, + { + "path": "lib/rust/barcode/src/binned.rs", + "sha256": "037a1e2fe6375782b84ff91faf34d826d23362202b980558f144f4f029b6aa43", + "language": "Rust", + "lines": 144, + "truncated": false, + "block": 1, + "row": 10814 + }, + { + "path": "lib/rust/barcode/src/cell_name.rs", + "sha256": "5e4d78cfc6ced39f216103b76d4295f614ac5d9ece30fea875e18ce48a2dfa82", + "language": "Rust", + "lines": 95, + "truncated": false, + "block": 1, + "row": 10748 + }, + { + "path": "lib/rust/barcode/src/correct_indel.rs", + "sha256": "5b5d5f4e5af3ceddc1b6ecc7147c786d6653223ed242f0d1986e05d241df387f", + "language": "Rust", + "lines": 161, + "truncated": false, + "block": 1, + "row": 10867 + }, + { + "path": "lib/rust/barcode/src/corrector.rs", + "sha256": "9df6d00d8e6fe47dd697b7bf71a79e1ee41dc400d95f74cf1be1f931d1c0b6ef", + "language": "Rust", + "lines": 348, + "truncated": false, + "block": 1, + "row": 10984 + }, + { + "path": "lib/rust/barcode/src/io_utils.rs", + "sha256": "be0b9fee6d46a0f3c5affcbaed447da24a017c571dc9543172f82f044c71c311", + "language": "Rust", + "lines": 20, + "truncated": false, + "block": 1, + "row": 10663 + }, + { + "path": "lib/rust/barcode/src/lib.rs", + "sha256": "e69e9e5949f44850c1b51f463aa9b81165b6988faf4f0dc1a803fd30b8834bdd", + "language": "Rust", + "lines": 1356, + "truncated": false, + "block": 1, + "row": 11080 + }, + { + "path": "lib/rust/barcode/src/short_string.rs", + "sha256": "8b6c3e7a72bf24debd7def195b44c37c0602f8d20ec32053412d2ddb356c5840", + "language": "Rust", + "lines": 209, + "truncated": false, + "block": 1, + "row": 10863 + }, + { + "path": "lib/rust/barcode/src/whitelist.rs", + "sha256": "9c07188ba1f461e6ec0915313a247daa38a7c1b14d93440f90c9df6944060ab5", + "language": "Rust", + "lines": 811, + "truncated": false, + "block": 1, + "row": 11064 + }, + { + "path": "lib/rust/barcode_extensions/src/lib.rs", + "sha256": "75f5b02e2257a407ff9ae19fa6d7021a4b4a4e20e56f334c2f707072910b855b", + "language": "Rust", + "lines": 72, + "truncated": false, + "block": 1, + "row": 10759 + }, + { + "path": "lib/rust/barcode_extensions/src/stubs/mod.rs", + "sha256": "ff32f308d0cea8365580817e32257c8cd45d8f90ade0160747f813669b27750f", + "language": "Rust", + "lines": 31, + "truncated": false, + "block": 1, + "row": 10677 + }, + { + "path": "lib/rust/barcodes_folder/src/lib.rs", + "sha256": "fa733d844261b4e6d0f551dc9398ff5afc3eeef8f1540c4fbf66ede9859b50bc", + "language": "Rust", + "lines": 198, + "truncated": false, + "block": 1, + "row": 10906 + }, + { + "path": "lib/rust/bazel_utils/src/lib.rs", + "sha256": "119b1141f3b1d52728b72f48641c834c7f1803255fcc0ab68c0c366428732576", + "language": "Rust", + "lines": 81, + "truncated": false, + "block": 1, + "row": 10751 + }, + { + "path": "lib/rust/byteseq/src/lib.rs", + "sha256": "48c2c0ac820d6830f3b3e53234e938f443f6cb7f412a8d846d98b986a9f2ebff", + "language": "Rust", + "lines": 54, + "truncated": false, + "block": 1, + "row": 10698 + }, + { + "path": "lib/rust/clonotype_assigner/src/assigner.rs", + "sha256": "245c3cefbc93349b5a08e325e258749a16a37d3abd03448364044640b226dc21", + "language": "Rust", + "lines": 282, + "truncated": false, + "block": 1, + "row": 10960 + }, + { + "path": "lib/rust/clonotype_assigner/src/fill_clonotype_info.rs", + "sha256": "edc1a06f78b88b69a868ea09bc2c37a9c6952e6e11e7317a0eab8733ac8e31c7", + "language": "Rust", + "lines": 169, + "truncated": false, + "block": 1, + "row": 10889 + }, + { + "path": "lib/rust/clonotype_assigner/src/handle_no_clonotyping.rs", + "sha256": "5b1a3386acedbc20685a9358dcf90c54d086e59c4188ca8fad1f0a48092c5767", + "language": "Rust", + "lines": 73, + "truncated": false, + "block": 1, + "row": 10743 + }, + { + "path": "lib/rust/clonotype_assigner/src/lib.rs", + "sha256": "10b71c959649159a5c22d5a1c207c6bbaf8de7cb03edc868472519f79352f8e3", + "language": "Rust", + "lines": 10, + "truncated": false, + "block": 1, + "row": 10641 + }, + { + "path": "lib/rust/clonotype_assigner/src/write_clonotype_outs.rs", + "sha256": "2460f51d7126996408ac97140a785329007038efb18e111c8bc9249d8bded18a", + "language": "Rust", + "lines": 217, + "truncated": false, + "block": 1, + "row": 10921 + }, + { + "path": "lib/rust/clonotype_assigner/src/write_concat_ref_outs.rs", + "sha256": "48d658f5315ea4ab9d4fa7049cc23b266db1a2eee11c3d0c3c0ce7e873d891c3", + "language": "Rust", + "lines": 198, + "truncated": false, + "block": 1, + "row": 10929 + }, + { + "path": "lib/rust/clonotype_assigner/src/write_consensus_bam.rs", + "sha256": "022b69c0c09f0be9194256546fa4076bcbe1a83ca355f5ca72bb616fa58be19e", + "language": "Rust", + "lines": 158, + "truncated": false, + "block": 1, + "row": 10879 + }, + { + "path": "lib/rust/clonotype_assigner/src/write_consensus_txt.rs", + "sha256": "6b02e444e3dcb587a356c7498fa5840a7c6afbfae74dd4b213b9c39eb2ebe49b", + "language": "Rust", + "lines": 213, + "truncated": false, + "block": 1, + "row": 10943 + }, + { + "path": "lib/rust/cloud_utils/src/lib.rs", + "sha256": "edbd406fa91e22bf71f46ff229d545f0f4615c05c916199b4e2a722cdf22a602", + "language": "Rust", + "lines": 32, + "truncated": false, + "block": 1, + "row": 10683 + }, + { + "path": "lib/rust/cr_aggr/src/bin/cr_aggr.rs", + "sha256": "245222edecc364055eda90070b12f0d121226c278468319f4df3fe174c60563a", + "language": "Rust", + "lines": 66, + "truncated": false, + "block": 1, + "row": 10720 + }, + { + "path": "lib/rust/cr_aggr/src/create_antigen_clonotype_clustermap.rs", + "sha256": "9cc8eeaee963ac5b8cb04910c181721981d91eebad24be5acc558cdfafda96c0", + "language": "Rust", + "lines": 51, + "truncated": false, + "block": 1, + "row": 10716 + }, + { + "path": "lib/rust/cr_aggr/src/errors.rs", + "sha256": "f6c18a3f02f7af24738988a6cd55a649a68696bd0bbe92b923e14b2dd806ad7c", + "language": "Rust", + "lines": 133, + "truncated": false, + "block": 1, + "row": 10823 + }, + { + "path": "lib/rust/cr_aggr/src/lib.rs", + "sha256": "add83b77a025e10dd20c8a40c666de1a721148909de309567f1144f3624af398", + "language": "Rust", + "lines": 26, + "truncated": false, + "block": 1, + "row": 10662 + }, + { + "path": "lib/rust/cr_aggr/src/match_vdj_outs.rs", + "sha256": "00514f886a01db591cc6c8cdd8495c04f304aeffcf58f6f4d5613167a79f5258", + "language": "Rust", + "lines": 141, + "truncated": false, + "block": 1, + "row": 10853 + }, + { + "path": "lib/rust/cr_aggr/src/merge_molecules.rs", + "sha256": "79f27eddeed34d413af27e22dcca905be8676305dddad814a5831041a4dfc20b", + "language": "Rust", + "lines": 623, + "truncated": false, + "block": 1, + "row": 11041 + }, + { + "path": "lib/rust/cr_aggr/src/parse_aggr_csv.rs", + "sha256": "89a320990350268d204f101eee1d16b8aba399c58108a26774d53f1fb0f5aea9", + "language": "Rust", + "lines": 1904, + "truncated": false, + "block": 1, + "row": 11092 + }, + { + "path": "lib/rust/cr_aggr/src/process_vdj_proto.rs", + "sha256": "ea4c3738bca11aa6f8c9cc6173097f40ee240d6d06ff72cf6032a18c0324d4ce", + "language": "Rust", + "lines": 270, + "truncated": false, + "block": 1, + "row": 10953 + }, + { + "path": "lib/rust/cr_aggr/src/run_enclone_aggr.rs", + "sha256": "a56e35514e88b0d176e238571a304cfa5c9e1109c80cd43169911a9fca95c252", + "language": "Rust", + "lines": 145, + "truncated": false, + "block": 1, + "row": 10846 + }, + { + "path": "lib/rust/cr_aggr/src/setup_vdj_aggr.rs", + "sha256": "9163507ad88d6f1e783c728e9cd0012ec2193bbba31675f0bbc646c02231fa08", + "language": "Rust", + "lines": 324, + "truncated": false, + "block": 1, + "row": 10968 + }, + { + "path": "lib/rust/cr_aggr/src/websummary/annotation_card.rs", + "sha256": "1b114a36ba34230b8d6fe1fb2a040e5c243ab4acfe3a5f295affb42587c44549", + "language": "Rust", + "lines": 232, + "truncated": false, + "block": 1, + "row": 10946 + }, + { + "path": "lib/rust/cr_aggr/src/websummary/cdr3_table.rs", + "sha256": "496da68cb9964c4418eca4646037d998ec8e7e00c27a2b360c0f635e6a4d2349", + "language": "Rust", + "lines": 217, + "truncated": false, + "block": 1, + "row": 10909 + }, + { + "path": "lib/rust/cr_aggr/src/websummary/cells_card.rs", + "sha256": "6269f1be90b85b6543b4ec0b1aa2d81eb922df9b5fa0fdd69e90850cea2e39eb", + "language": "Rust", + "lines": 150, + "truncated": false, + "block": 1, + "row": 10848 + }, + { + "path": "lib/rust/cr_aggr/src/websummary/hero_metrics.rs", + "sha256": "03730b0939cf470163336aabf0dcfdde33532b86be8d0b863240d5d03fd9fac1", + "language": "Rust", + "lines": 69, + "truncated": false, + "block": 1, + "row": 10730 + }, + { + "path": "lib/rust/cr_aggr/src/websummary/mod.rs", + "sha256": "ee28c7f8ba664ad647a295859672ad40740e97d167fc54011e6dd53a3b1e3f5e", + "language": "Rust", + "lines": 260, + "truncated": false, + "block": 1, + "row": 10907 + }, + { + "path": "lib/rust/cr_aggr/src/write_aggr_ann.rs", + "sha256": "be674c668af41b83045c2e543efed25703aa7fb1a8a276b7cc1768cd3d288f13", + "language": "Rust", + "lines": 120, + "truncated": false, + "block": 1, + "row": 10805 + }, + { + "path": "lib/rust/cr_aggr/src/write_contig_proto.rs", + "sha256": "426348ed76904469c9742d8de6681a7871993af96de5c636d6af953755c99c78", + "language": "Rust", + "lines": 147, + "truncated": false, + "block": 1, + "row": 10864 + }, + { + "path": "lib/rust/cr_aggr/src/write_ws_json.rs", + "sha256": "b55fa3bd19157975693faf5f5c85d5b22ac9bba426ab01bb7f424a29534bfd43", + "language": "Rust", + "lines": 319, + "truncated": false, + "block": 1, + "row": 10986 + }, + { + "path": "lib/rust/cr_ana/src/bin/cr_ana.rs", + "sha256": "9e2c5cb256430d656f85e77d839ea10c3e7f1d3b1ca07e1eb82d2e3f9776f8cf", + "language": "Rust", + "lines": 49, + "truncated": false, + "block": 1, + "row": 10688 + }, + { + "path": "lib/rust/cr_ana/src/hclust_utils.rs", + "sha256": "c53e3a5c9c6df614a0a996f48035e7755e56a6d5e23519af046cb50e9e251d89", + "language": "Rust", + "lines": 97, + "truncated": false, + "block": 1, + "row": 10800 + }, + { + "path": "lib/rust/cr_ana/src/io/csv.rs", + "sha256": "be57c4423d26931084f0ae4ac2a6395bd140d7407dd90e9c6786c13d697abe3f", + "language": "Rust", + "lines": 254, + "truncated": false, + "block": 1, + "row": 10918 + }, + { + "path": "lib/rust/cr_ana/src/io/h5.rs", + "sha256": "a51a70ec6c80dbc3c470a4d28eb621151e39d867e9e8970c0288539f327086fc", + "language": "Rust", + "lines": 538, + "truncated": false, + "block": 1, + "row": 11026 + }, + { + "path": "lib/rust/cr_ana/src/io/mod.rs", + "sha256": "4dc90b6548dc166710f695d31cc9776dd0fd040b6d4d9362b38073208effa341", + "language": "Rust", + "lines": 5, + "truncated": false, + "block": 1, + "row": 10623 + }, + { + "path": "lib/rust/cr_ana/src/lib.rs", + "sha256": "79e81fc20d79ecf8efe7601f1eb43ad6b460641290f96a26c2c24038aa42761f", + "language": "Rust", + "lines": 18, + "truncated": false, + "block": 1, + "row": 10648 + }, + { + "path": "lib/rust/cr_ana/src/louvain.rs", + "sha256": "4ec07119452af0aed0017f9b077eb1a87a3ae14578e4a22e761d16a6ba4b0123", + "language": "Rust", + "lines": 137, + "truncated": false, + "block": 1, + "row": 10831 + }, + { + "path": "lib/rust/cr_ana/src/pca.rs", + "sha256": "eb56b33c23db7820eaf39b43075a44833c7756da3eadcc0047f537a5f085542c", + "language": "Rust", + "lines": 369, + "truncated": false, + "block": 1, + "row": 10991 + }, + { + "path": "lib/rust/cr_ana/src/stage_testing.rs", + "sha256": "c2767e129e47541172714e578259fca869a7d05359c7d388f2c8610a4b68b986", + "language": "Rust", + "lines": 206, + "truncated": false, + "block": 1, + "row": 10905 + }, + { + "path": "lib/rust/cr_ana/src/stages/assign_low_umi_cells.rs", + "sha256": "3764d2fd3409367887116707e9baf8bac3ce043986fd9e6b58ae9298e83ddd24", + "language": "Rust", + "lines": 246, + "truncated": false, + "block": 1, + "row": 10959 + }, + { + "path": "lib/rust/cr_ana/src/stages/diff_exp_stage.rs", + "sha256": "1138486f838d8b269915debc5d398087605fcae332b2db344f06c40161094601", + "language": "Rust", + "lines": 269, + "truncated": false, + "block": 1, + "row": 10949 + }, + { + "path": "lib/rust/cr_ana/src/stages/graph_clustering.rs", + "sha256": "ff4fa07c472b97f2e2bccfe88ebfa137b7e5bfbcbc7d2e7471dd64320d426cba", + "language": "Rust", + "lines": 308, + "truncated": false, + "block": 1, + "row": 10962 + }, + { + "path": "lib/rust/cr_ana/src/stages/hierarchical_clustering.rs", + "sha256": "5ec75d02a534af9c38489b0b39ec5b8f8720ae393a22618b624948027366151b", + "language": "Rust", + "lines": 182, + "truncated": false, + "block": 1, + "row": 10894 + }, + { + "path": "lib/rust/cr_ana/src/stages/mod.rs", + "sha256": "2abdef03b6671c3c82e19f022f7befa49cbbda03ba1e700d71060b9095268a75", + "language": "Rust", + "lines": 11, + "truncated": false, + "block": 1, + "row": 10634 + }, + { + "path": "lib/rust/cr_ana/src/stages/pca.rs", + "sha256": "a3fcb7fa6435bf5f83df4da96685fd2e9e8c0699f9911e5aec876268eeda0f55", + "language": "Rust", + "lines": 178, + "truncated": false, + "block": 1, + "row": 10865 + }, + { + "path": "lib/rust/cr_ana/src/stages/pca2.rs", + "sha256": "a0db1fd1463daa090f7acc1dff849c441e29bbe4e44ff4f4bab7f5af88ca7f4c", + "language": "Rust", + "lines": 122, + "truncated": false, + "block": 1, + "row": 10798 + }, + { + "path": "lib/rust/cr_ana/src/stages/tsne.rs", + "sha256": "a6a586ed59b4bb5612578ea251bee17a09ccdcec1363353a80607167a0dc3fb7", + "language": "Rust", + "lines": 212, + "truncated": false, + "block": 1, + "row": 10904 + }, + { + "path": "lib/rust/cr_ana/src/stages/umap.rs", + "sha256": "a9c917b3ab6dbff5bb75376c08b455da732fbce6b26660ab0c1354a865d49d27", + "language": "Rust", + "lines": 181, + "truncated": false, + "block": 1, + "row": 10871 + }, + { + "path": "lib/rust/cr_ana/src/test_pipeline.rs", + "sha256": "f6cd017e71f1f870f88d6bcf27704661b74ea90f6024f7ab884007e65c9b757d", + "language": "Rust", + "lines": 93, + "truncated": false, + "block": 1, + "row": 10753 + }, + { + "path": "lib/rust/cr_ana/src/types.rs", + "sha256": "c39ef8975f6771c2aec4aee57a87be8ce4b8ab5a49a4c9828be62fe4d62c5792", + "language": "Rust", + "lines": 264, + "truncated": false, + "block": 1, + "row": 10919 + }, + { + "path": "lib/rust/cr_bam/src/bam.rs", + "sha256": "a6dcabc0ab3f964759494fc3405b24ebc69f09e453e5c5108b5e44a50e2d4002", + "language": "Rust", + "lines": 205, + "truncated": false, + "block": 1, + "row": 10886 + }, + { + "path": "lib/rust/cr_bam/src/bam_tags.rs", + "sha256": "f2d545c7d87bdef17bc8c92b3774f9f468077b8fb16df61b219845f4cf9bdda5", + "language": "Rust", + "lines": 63, + "truncated": false, + "block": 1, + "row": 10735 + }, + { + "path": "lib/rust/cr_bam/src/constants.rs", + "sha256": "b275f770a6c96aa274c3e334f19a3709e69bdc151bbe2603b5d189789e01801e", + "language": "Rust", + "lines": 11, + "truncated": false, + "block": 1, + "row": 10656 + }, + { + "path": "lib/rust/cr_bam/src/lib.rs", + "sha256": "6ebc9883d036bfd3395683f1a0640ffad26b2115e5df6d5af54769a0556da47d", + "language": "Rust", + "lines": 6, + "truncated": false, + "block": 1, + "row": 10628 + }, + { + "path": "lib/rust/cr_h5/src/compare.rs", + "sha256": "ccab8c4f1e9ce199e0ae0c434eb19d25d1f2b8dc39280f68c7af2dd3fcc29a26", + "language": "Rust", + "lines": 366, + "truncated": false, + "block": 1, + "row": 10980 + }, + { + "path": "lib/rust/cr_h5/src/count_matrix.rs", + "sha256": "ae333e111a1a2f1dbc6e2a6bd812607a0aed2f601a74c05870a7ad1a670c9be9", + "language": "Rust", + "lines": 820, + "truncated": false, + "block": 1, + "row": 11065 + }, + { + "path": "lib/rust/cr_h5/src/feature_reference_io.rs", + "sha256": "3ef69ef7909c2996a397da9fd717c70c52f8f61196ffa61155e671ce573bf5ed", + "language": "Rust", + "lines": 539, + "truncated": false, + "block": 1, + "row": 11022 + }, + { + "path": "lib/rust/cr_h5/src/iter.rs", + "sha256": "6e5ba1e54a7153cf4fdd785dd00019e68a0570e22e4d698de5c19d35e3c15095", + "language": "Rust", + "lines": 256, + "truncated": false, + "block": 1, + "row": 10911 + }, + { + "path": "lib/rust/cr_h5/src/lib.rs", + "sha256": "edd7501168f429ddcdcc1c7b18eee053911e7124468da3f9e2c6a419864d5178", + "language": "Rust", + "lines": 164, + "truncated": false, + "block": 1, + "row": 10836 + }, + { + "path": "lib/rust/cr_h5/src/molecule_info.rs", + "sha256": "e4de03ce619cc33bf60f075ddc7a5b1c22ee04246a7dbb01a6c47a7c33db6d0a", + "language": "Rust", + "lines": 1586, + "truncated": false, + "block": 1, + "row": 11088 + }, + { + "path": "lib/rust/cr_h5/src/probe_reference_io.rs", + "sha256": "ee9296aeb39eb497a79c71c88a7a4031f0c4a3d8c4d119fdf0700eb13c2a4c42", + "language": "Rust", + "lines": 198, + "truncated": false, + "block": 1, + "row": 10891 + }, + { + "path": "lib/rust/cr_lib/src/align_and_count_metrics.rs", + "sha256": "6eb35eb5ff4042866eeefb828cd5c6a5acaf7284d2f43528fbafb961c2ed6481", + "language": "Rust", + "lines": 140, + "truncated": false, + "block": 1, + "row": 10837 + }, + { + "path": "lib/rust/cr_lib/src/align_homopolymer.rs", + "sha256": "be5d506ddbb18098f75504f0f082696060c8b781767ddb0326c393cbed949f19", + "language": "Rust", + "lines": 105, + "truncated": false, + "block": 1, + "row": 10783 + }, + { + "path": "lib/rust/cr_lib/src/align_metrics.rs", + "sha256": "3e72a926d35b7e745ee90004e43208afddb31a96f43a8e3e51b07e265271b5ac", + "language": "Rust", + "lines": 1167, + "truncated": false, + "block": 1, + "row": 11075 + }, + { + "path": "lib/rust/cr_lib/src/aligner.rs", + "sha256": "ac5751c79a4ddc8372ef1fb0c058f7ae2504adf44b8cc01d97877ec09e7e981c", + "language": "Rust", + "lines": 853, + "truncated": false, + "block": 1, + "row": 11062 + }, + { + "path": "lib/rust/cr_lib/src/barcode_correction_metrics.rs", + "sha256": "46476b90fc80d0e8950fde9c87a8cca35734fd2c2376728b6ae5ecdef7d90b84", + "language": "Rust", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10843 + }, + { + "path": "lib/rust/cr_lib/src/barcode_overlap.rs", + "sha256": "6d147eda363327e7ecb198a9c3c038e723774350fbe53377c89fcd32a96e5e80", + "language": "Rust", + "lines": 147, + "truncated": false, + "block": 1, + "row": 10847 + }, + { + "path": "lib/rust/cr_lib/src/barcode_sort.rs", + "sha256": "47a50f69aa9ef2a4e144fb738b5e8fd72db8648a6ad42a10c920e2f515a9675c", + "language": "Rust", + "lines": 744, + "truncated": false, + "block": 1, + "row": 11052 + }, + { + "path": "lib/rust/cr_lib/src/bin/cr_lib.rs", + "sha256": "5cec1a13c7773607560125d7ef27f1a4037c0fbdbb1fe7d5e98ecdbab483d1c0", + "language": "Rust", + "lines": 141, + "truncated": false, + "block": 1, + "row": 10822 + }, + { + "path": "lib/rust/cr_lib/src/cell_annotation_ws_parameters.rs", + "sha256": "e4e154bd407383c56702558e9d26a4bb90cd698432bce7462e14cd8c1d843825", + "language": "Rust", + "lines": 626, + "truncated": false, + "block": 1, + "row": 11060 + }, + { + "path": "lib/rust/cr_lib/src/crispr_perturbation_stats.rs", + "sha256": "d09e8fb779a8097aae5daa1cf73ab675ca1c68bab3704cd1864dc40e559e1a5b", + "language": "Rust", + "lines": 314, + "truncated": false, + "block": 1, + "row": 10996 + }, + { + "path": "lib/rust/cr_lib/src/detect_chemistry/adapter_filter.rs", + "sha256": "fbd565b8745bbfed7a5e1dcc50da2172976ad4d6d9adda6173073476a1c64289", + "language": "Rust", + "lines": 254, + "truncated": false, + "block": 1, + "row": 10928 + }, + { + "path": "lib/rust/cr_lib/src/detect_chemistry/chemistry_filter.rs", + "sha256": "2e5a2359cb2e6bbd11ad7e0527289024c2dea713cc2e3833db4ae7092750e318", + "language": "Rust", + "lines": 235, + "truncated": false, + "block": 1, + "row": 10927 + }, + { + "path": "lib/rust/cr_lib/src/detect_chemistry/errors.rs", + "sha256": "118c48fbd1d5c203bfc28617e4e1a5c5ae221414835ede76a8b527b8c459e1d9", + "language": "Rust", + "lines": 275, + "truncated": false, + "block": 1, + "row": 10987 + }, + { + "path": "lib/rust/cr_lib/src/detect_chemistry/identity_check.rs", + "sha256": "e4b5930ecc13be167bd34d22d8a312df04ca2b846d4f590e742e72d49bc81970", + "language": "Rust", + "lines": 81, + "truncated": false, + "block": 1, + "row": 10747 + }, + { + "path": "lib/rust/cr_lib/src/detect_chemistry/length_filter.rs", + "sha256": "eda7a6f80a381e8d3ed5f17a46b592600149e81c6a861ecfff8b9961c0e6202d", + "language": "Rust", + "lines": 191, + "truncated": false, + "block": 1, + "row": 10880 + }, + { + "path": "lib/rust/cr_lib/src/detect_chemistry/mapping_filter.rs", + "sha256": "1bd5f4492303296dd53f253d16381b2eead9124e6e5c763c86af19b00fe42ffb", + "language": "Rust", + "lines": 178, + "truncated": false, + "block": 1, + "row": 10888 + }, + { + "path": "lib/rust/cr_lib/src/detect_chemistry/mod.rs", + "sha256": "f0383c4cebb100f2f4fbcaf97f1fbf78c9e6657a43c6845199dcbfab114802e1", + "language": "Rust", + "lines": 12, + "truncated": false, + "block": 1, + "row": 10645 + }, + { + "path": "lib/rust/cr_lib/src/detect_chemistry/probe_bc_check.rs", + "sha256": "521b60a050ec82cb3a767ca2aa70f94a7c8d1a49bdf45b12f9de44a0bc7da533", + "language": "Rust", + "lines": 145, + "truncated": false, + "block": 1, + "row": 10884 + }, + { + "path": "lib/rust/cr_lib/src/detect_chemistry/probe_bc_pairing.rs", + "sha256": "d4707876b10440ce56e3aba3af3f0957f8814253af28d03cead1cde4dc6a7f1f", + "language": "Rust", + "lines": 230, + "truncated": false, + "block": 1, + "row": 10930 + }, + { + "path": "lib/rust/cr_lib/src/detect_chemistry/whitelist_filter.rs", + "sha256": "a65945a4fe1db40b59723dee5174bc06baee78ad63a8b3717018d13645a6e400", + "language": "Rust", + "lines": 213, + "truncated": false, + "block": 1, + "row": 10914 + }, + { + "path": "lib/rust/cr_lib/src/env.rs", + "sha256": "850baa514b9e839233f992fa64338ba4287f37c205489b2791f5e3154543acde", + "language": "Rust", + "lines": 39, + "truncated": false, + "block": 1, + "row": 10690 + }, + { + "path": "lib/rust/cr_lib/src/fit_piecewise_linear_model.rs", + "sha256": "69d3a2e3010082b6b966abbf9dbc7e2bca185d94aa957381f6acddeeca91fde3", + "language": "Rust", + "lines": 249, + "truncated": false, + "block": 1, + "row": 10945 + }, + { + "path": "lib/rust/cr_lib/src/gdna_utils.rs", + "sha256": "ac3e615cf1abf67078f15860c6904f88a31407652e7548a9a63a9c1b1ff2ef24", + "language": "Rust", + "lines": 486, + "truncated": false, + "block": 1, + "row": 11033 + }, + { + "path": "lib/rust/cr_lib/src/io.rs", + "sha256": "52570f75abd2ace84ac0ca52c6a018012895f2b8694ea0c8493bffd078ea2798", + "language": "Rust", + "lines": 18, + "truncated": false, + "block": 1, + "row": 10660 + }, + { + "path": "lib/rust/cr_lib/src/lib.rs", + "sha256": "1a5c37ad0aa678cdb77cd5d59f8419ad5cbd27f72fc99e84391ae8a289fb8c09", + "language": "Rust", + "lines": 94, + "truncated": false, + "block": 1, + "row": 10744 + }, + { + "path": "lib/rust/cr_lib/src/make_shard_metrics.rs", + "sha256": "da7b07737521b0071e94732d9fae2adbad60cb949f60ccbd6ff98ca3f29a1406", + "language": "Rust", + "lines": 547, + "truncated": false, + "block": 1, + "row": 11039 + }, + { + "path": "lib/rust/cr_lib/src/minimap2.rs", + "sha256": "0f9d21ab4f3c422b1b1d1a48f37410fc621d97f0025922a2bce02834f92142d6", + "language": "Rust", + "lines": 90, + "truncated": false, + "block": 1, + "row": 10760 + }, + { + "path": "lib/rust/cr_lib/src/parquet_file.rs", + "sha256": "c71ce26f9cb56f9a1055280e770c7803e6baf41ded7948825cd96fe6f103fc79", + "language": "Rust", + "lines": 441, + "truncated": false, + "block": 1, + "row": 10995 + }, + { + "path": "lib/rust/cr_lib/src/preflight.rs", + "sha256": "eeec9af2174b9711bf0396be2c9794d556732e377db9fc34c2993a5dc0a73453", + "language": "Rust", + "lines": 844, + "truncated": false, + "block": 1, + "row": 11067 + }, + { + "path": "lib/rust/cr_lib/src/probe_barcode_matrix.rs", + "sha256": "634e75b1480fc89f86ca12b718c91b9191aabd788149febc231e03e62b5db23b", + "language": "Rust", + "lines": 307, + "truncated": false, + "block": 1, + "row": 10978 + }, + { + "path": "lib/rust/cr_lib/src/read_level_multiplexing.rs", + "sha256": "a3897273c72a91e30e668901ddeca24887760758d296231e4127a01d775ef6f0", + "language": "Rust", + "lines": 113, + "truncated": false, + "block": 1, + "row": 10809 + }, + { + "path": "lib/rust/cr_lib/src/stages/align_and_count.rs", + "sha256": "b923f86815003586fc56d014c3e21411c854f2e0432cf604016f11d37ed48692", + "language": "Rust", + "lines": 1303, + "truncated": false, + "block": 1, + "row": 11084 + }, + { + "path": "lib/rust/cr_lib/src/stages/barcode_correction.rs", + "sha256": "b85948c1d6e57f1db382a5221137e78cbba58f90137aa51f13f17edfc2554e49", + "language": "Rust", + "lines": 673, + "truncated": false, + "block": 1, + "row": 11059 + }, + { + "path": "lib/rust/cr_lib/src/stages/build_per_sample_vdj_ws_contents.rs", + "sha256": "7a9bd03e8eb148a93e6e908b7a8688276d1895b1d80f674a20db4a5b5a1febea", + "language": "Rust", + "lines": 411, + "truncated": false, + "block": 1, + "row": 11010 + }, + { + "path": "lib/rust/cr_lib/src/stages/call_tags_genetic.rs", + "sha256": "92e9b9a91dd44298d5e406fbfadc55227e00553a8264659d82ca7f6dd2967df9", + "language": "Rust", + "lines": 133, + "truncated": false, + "block": 1, + "row": 10833 + }, + { + "path": "lib/rust/cr_lib/src/stages/call_tags_read_level.rs", + "sha256": "62d6a553c784ee469ecb0421371a6115843c07fc3e81fb77f2a4b9b2ab4831e2", + "language": "Rust", + "lines": 660, + "truncated": false, + "block": 1, + "row": 11054 + }, + { + "path": "lib/rust/cr_lib/src/stages/check_barcodes_compatibility.rs", + "sha256": "3c558e392848c8c073f206f7b4cf85cd5d6538309657378297460bb6ab57fccf", + "language": "Rust", + "lines": 588, + "truncated": false, + "block": 1, + "row": 11046 + }, + { + "path": "lib/rust/cr_lib/src/stages/check_barcodes_compatibility_vdj.rs", + "sha256": "08b59db21d55331ae11c12e8e8c47ccdee2b018cac5c1bdd852b9cda700c3612", + "language": "Rust", + "lines": 514, + "truncated": false, + "block": 1, + "row": 11038 + }, + { + "path": "lib/rust/cr_lib/src/stages/check_single_beam_mode.rs", + "sha256": "394792a5440ede70958e0f92db49b99ee83709a47eefbe9f007f8a59b4a64d39", + "language": "Rust", + "lines": 38, + "truncated": false, + "block": 1, + "row": 10686 + }, + { + "path": "lib/rust/cr_lib/src/stages/collate_metrics.rs", + "sha256": "5eb1759d6ab96d53ae8cadb046262c41f08383c1eec56f550808bccd27d74b68", + "language": "Rust", + "lines": 466, + "truncated": false, + "block": 1, + "row": 11018 + }, + { + "path": "lib/rust/cr_lib/src/stages/collate_probe_metrics.rs", + "sha256": "d78021c8bce652783a16e561a933326be20497fa74d789c84b907b78aa4abb1b", + "language": "Rust", + "lines": 145, + "truncated": false, + "block": 1, + "row": 10854 + }, + { + "path": "lib/rust/cr_lib/src/stages/combine_chemistry_defs.rs", + "sha256": "25805eebee4204087b34f1978abc9e8c60fe2a1e1bba2dddfedb66d18aaf164c", + "language": "Rust", + "lines": 77, + "truncated": false, + "block": 1, + "row": 10749 + }, + { + "path": "lib/rust/cr_lib/src/stages/compute_antigen_vdj_metrics.rs", + "sha256": "6ee27f9ea12d14ef026ecb11dbcee695580ac05c9bfdba71f4b9b6dbb680643b", + "language": "Rust", + "lines": 196, + "truncated": false, + "block": 1, + "row": 10895 + }, + { + "path": "lib/rust/cr_lib/src/stages/compute_subseq_metrics.rs", + "sha256": "74a2e34f869b5624bd576b55bbba18345a027b8d3ef49616e148a70d8cf13c01", + "language": "Rust", + "lines": 672, + "truncated": false, + "block": 1, + "row": 11049 + }, + { + "path": "lib/rust/cr_lib/src/stages/copy_chemistry_spec.rs", + "sha256": "4bafb4fb2f9128a3abf780865d1791bc9a0f2968e717e52087d66a4bf9badc27", + "language": "Rust", + "lines": 71, + "truncated": false, + "block": 1, + "row": 10746 + }, + { + "path": "lib/rust/cr_lib/src/stages/count_alleles.rs", + "sha256": "5d0263ca0e65caa2752bf61c78ec9878732f850978c55143e553c3c381ea1587", + "language": "Rust", + "lines": 245, + "truncated": false, + "block": 1, + "row": 10931 + }, + { + "path": "lib/rust/cr_lib/src/stages/create_multi_graph.rs", + "sha256": "31e88b28cc37693c242a4b3a9f827b5129aa70b308d92ae0804369c87faa78bd", + "language": "Rust", + "lines": 51, + "truncated": false, + "block": 1, + "row": 10715 + }, + { + "path": "lib/rust/cr_lib/src/stages/demux_probe_bc_matrix.rs", + "sha256": "295c0245891bc864bbeec28a0f5913e86196996e1dcb6b181718c219729a538f", + "language": "Rust", + "lines": 173, + "truncated": false, + "block": 1, + "row": 10882 + }, + { + "path": "lib/rust/cr_lib/src/stages/detect_chemistry.rs", + "sha256": "6bea02dc6d763a3614111e9d76398e005ab0fc162e3d259d859077d6d10f31e2", + "language": "Rust", + "lines": 2699, + "truncated": false, + "block": 1, + "row": 11096 + }, + { + "path": "lib/rust/cr_lib/src/stages/detect_chemistry_test.rs", + "sha256": "b7ff50d794cc13604c2b7f4dbb5aeb006a0adba7891b8be525e989e0e4a9a204", + "language": "Rust", + "lines": 136, + "truncated": false, + "block": 1, + "row": 10818 + }, + { + "path": "lib/rust/cr_lib/src/stages/detect_vdj_receptor.rs", + "sha256": "110293cfb244c52a7ef3689228739a0638184474a70524b57284488ba6bd643e", + "language": "Rust", + "lines": 469, + "truncated": false, + "block": 1, + "row": 11027 + }, + { + "path": "lib/rust/cr_lib/src/stages/expect_single_barcode_whitelist.rs", + "sha256": "6654fc0dc53fdecb5b4828e75b93dde43601ff5d5f7d4ff2a46d8715faa3d02e", + "language": "Rust", + "lines": 41, + "truncated": false, + "block": 1, + "row": 10684 + }, + { + "path": "lib/rust/cr_lib/src/stages/extract_single_chemistry.rs", + "sha256": "e0009bf66640bc3563974d77c3b1be4ff15e460f457f98e7c2f01fe94e55b6b7", + "language": "Rust", + "lines": 51, + "truncated": false, + "block": 1, + "row": 10713 + }, + { + "path": "lib/rust/cr_lib/src/stages/generate_cas_metrics.rs", + "sha256": "befd66fa6dba8abc3ebf7276e341b763e4ee41ef1f9fa4a2e6ca9d12fa6dcf49", + "language": "Rust", + "lines": 87, + "truncated": false, + "block": 1, + "row": 10785 + }, + { + "path": "lib/rust/cr_lib/src/stages/generate_cas_websummary.rs", + "sha256": "98f563d084fc5aaa97a90e4ce8ba810e5e6ecf0a920d5561af20239d53f8d3e9", + "language": "Rust", + "lines": 348, + "truncated": false, + "block": 1, + "row": 11001 + }, + { + "path": "lib/rust/cr_lib/src/stages/get_chemistry_def.rs", + "sha256": "5d4bbb3fd312f41e1cb47dcc181345fe80f2b7d7431216bb6f7308d88c74cd3e", + "language": "Rust", + "lines": 43, + "truncated": false, + "block": 1, + "row": 10689 + }, + { + "path": "lib/rust/cr_lib/src/stages/get_gdna_metrics.rs", + "sha256": "96d49ceaf26e9b3ad9493b2bcdb78c1f0f66b1bc6a79e255c8c4125236fa753c", + "language": "Rust", + "lines": 73, + "truncated": false, + "block": 1, + "row": 10739 + }, + { + "path": "lib/rust/cr_lib/src/stages/logic_not.rs", + "sha256": "e076abea783f38a2a2d116675f0752e5986b2348909bb88fcd4a0bd1e7588e17", + "language": "Rust", + "lines": 37, + "truncated": false, + "block": 1, + "row": 10679 + }, + { + "path": "lib/rust/cr_lib/src/stages/make_correction_map.rs", + "sha256": "732db41c99406eb543f5ca4ecaa1514fa48ec88a5660578a20f620605deffa2a", + "language": "Rust", + "lines": 143, + "truncated": false, + "block": 1, + "row": 10840 + }, + { + "path": "lib/rust/cr_lib/src/stages/make_shard.rs", + "sha256": "6b0fb45a46729ac71b080d6f00bab285194c8b7d58a7fdab7100467f62ecc946", + "language": "Rust", + "lines": 673, + "truncated": false, + "block": 1, + "row": 11053 + }, + { + "path": "lib/rust/cr_lib/src/stages/merge_metrics.rs", + "sha256": "85ce7b022658c9bc5ad4943fae24d40c4538868f42dd804ceb1d7e3ffae675ba", + "language": "Rust", + "lines": 46, + "truncated": false, + "block": 1, + "row": 10694 + }, + { + "path": "lib/rust/cr_lib/src/stages/merge_metrics_maps.rs", + "sha256": "1d79e015fc62fff8a7b7d1dd4ece95df3be6f9de4120c02e1fc5ba8edd8544d9", + "language": "Rust", + "lines": 56, + "truncated": false, + "block": 1, + "row": 10707 + }, + { + "path": "lib/rust/cr_lib/src/stages/merge_vdj_cell_barcodes.rs", + "sha256": "e87a8bd8c7a7c408886ade528c56f1f92e4a8835c3fe7b6790c1e627f4863b29", + "language": "Rust", + "lines": 125, + "truncated": false, + "block": 1, + "row": 10835 + }, + { + "path": "lib/rust/cr_lib/src/stages/mod.rs", + "sha256": "fd2f8f157bdb1521437a202404ba17a134ebb212aaaed2a2ec84136c54b82226", + "language": "Rust", + "lines": 121, + "truncated": false, + "block": 1, + "row": 10826 + }, + { + "path": "lib/rust/cr_lib/src/stages/multi_preflight.rs", + "sha256": "d2b77fbb217e2d87256fb0af4a9d90f1aafdb273b68ba633a2ddf5c2f17de136", + "language": "Rust", + "lines": 445, + "truncated": false, + "block": 1, + "row": 11007 + }, + { + "path": "lib/rust/cr_lib/src/stages/multi_setup_chunks.rs", + "sha256": "446b79f68d43827e0dc1355b1077e8f25604af0352658028c5d2c2850575efd6", + "language": "Rust", + "lines": 136, + "truncated": false, + "block": 1, + "row": 10838 + }, + { + "path": "lib/rust/cr_lib/src/stages/parse_multi_config.rs", + "sha256": "d0326844cb762b3e3418bea7716fdb3f65eb52d96b18ba3357fe28142cce3b78", + "language": "Rust", + "lines": 1003, + "truncated": false, + "block": 1, + "row": 11072 + }, + { + "path": "lib/rust/cr_lib/src/stages/pick_beam_analyzer.rs", + "sha256": "e6df923024180b29582ec74f462a5d8a70f6b0ebd0b86f17b7ce77f598b06a21", + "language": "Rust", + "lines": 126, + "truncated": false, + "block": 1, + "row": 10844 + }, + { + "path": "lib/rust/cr_lib/src/stages/rust_bridge.rs", + "sha256": "4c2de35468efdbd0a5308642dd71bb5743162eb9ab1df7377806d98adc3f2f15", + "language": "Rust", + "lines": 225, + "truncated": false, + "block": 1, + "row": 10920 + }, + { + "path": "lib/rust/cr_lib/src/stages/setup_reference_info.rs", + "sha256": "e88e618336e6c77cffb61ede0ff3b7b6b493876b6b15f5dce41dad75afa4e2c4", + "language": "Rust", + "lines": 126, + "truncated": false, + "block": 1, + "row": 10811 + }, + { + "path": "lib/rust/cr_lib/src/stages/setup_vdj_analysis.rs", + "sha256": "ccdbf0114c66102c99f8080a78ec8f9016cb4277defd911f838677f10422d7c9", + "language": "Rust", + "lines": 197, + "truncated": false, + "block": 1, + "row": 10899 + }, + { + "path": "lib/rust/cr_lib/src/stages/setup_vdj_demux.rs", + "sha256": "e60a7d3b58cb41ef5061bca6f7ae2903eb010a41b5aa90021d198f36794a8ce4", + "language": "Rust", + "lines": 101, + "truncated": false, + "block": 1, + "row": 10799 + }, + { + "path": "lib/rust/cr_lib/src/stages/split_perturbation_matrix.rs", + "sha256": "d7ec6970f8ead69848bf58e72362b8da59b98a0815c0c54bd7c0ea5f5f55d4a6", + "language": "Rust", + "lines": 584, + "truncated": false, + "block": 1, + "row": 11050 + }, + { + "path": "lib/rust/cr_lib/src/stages/stubs.rs", + "sha256": "743fc03f23fc73dd7cbc6f9d54821e5f643ea0b11f2487d3b6fe5c0837d16da7", + "language": "Rust", + "lines": 21, + "truncated": false, + "block": 1, + "row": 10658 + }, + { + "path": "lib/rust/cr_lib/src/stages/summarize_matrix_dims.rs", + "sha256": "c6cc4098048025e14d340261dc186b4d0511384821fdfad8181109dee240ee5a", + "language": "Rust", + "lines": 90, + "truncated": false, + "block": 1, + "row": 10774 + }, + { + "path": "lib/rust/cr_lib/src/stages/write_barcode_index.rs", + "sha256": "fb0f34568cd62aee64e7353ef68e9977b443ab698a27fb2fe1c6d2be4cd25ad9", + "language": "Rust", + "lines": 72, + "truncated": false, + "block": 1, + "row": 10732 + }, + { + "path": "lib/rust/cr_lib/src/stages/write_barcode_summary.rs", + "sha256": "4e82aed4e5455ba0388f463d178bca25cb19ef4e0a846268f2cd7b6af97dd1c8", + "language": "Rust", + "lines": 419, + "truncated": false, + "block": 1, + "row": 11009 + }, + { + "path": "lib/rust/cr_lib/src/stages/write_crispr_only_matrix.rs", + "sha256": "40b0ea2ecc9904636dfc2dac5f6c8c2320d438adb2e335f88df2ca3f65def160", + "language": "Rust", + "lines": 210, + "truncated": false, + "block": 1, + "row": 10951 + }, + { + "path": "lib/rust/cr_lib/src/stages/write_gene_index.rs", + "sha256": "49dadf6091fa772937891e8fee88d3d413441b0452470328a5af4152fd01ed8f", + "language": "Rust", + "lines": 40, + "truncated": false, + "block": 1, + "row": 10685 + }, + { + "path": "lib/rust/cr_lib/src/stages/write_h5_matrix.rs", + "sha256": "bbf0c2ef61736b5fef375e5edfeaf6904529a6efa344e58b1b448dac699ace48", + "language": "Rust", + "lines": 81, + "truncated": false, + "block": 1, + "row": 10752 + }, + { + "path": "lib/rust/cr_lib/src/stages/write_matrix_market.rs", + "sha256": "3abdc8c4893e781a29f55e9b6b4daf5fcd84d6f482a297e32f03207e1a31481c", + "language": "Rust", + "lines": 190, + "truncated": false, + "block": 1, + "row": 10873 + }, + { + "path": "lib/rust/cr_lib/src/stages/write_minimap_index.rs", + "sha256": "16340ca04ab8178ca4e8565fff951366b9d5f85e5c55d25547b5a95afc3e8536", + "language": "Rust", + "lines": 74, + "truncated": false, + "block": 1, + "row": 10742 + }, + { + "path": "lib/rust/cr_lib/src/stages/write_molecule_info.rs", + "sha256": "fd8de8c56599d5fe93ad17c471f7588d77b244b181dca6c17bd26bb3b7693b46", + "language": "Rust", + "lines": 706, + "truncated": false, + "block": 1, + "row": 11056 + }, + { + "path": "lib/rust/cr_lib/src/stages/write_multi_web_summary.rs", + "sha256": "502d27d0b74b44e754374710c06cb87dfdca58b80ca6e564db1c33c7834e09b7", + "language": "Rust", + "lines": 2735, + "truncated": false, + "block": 1, + "row": 11097 + }, + { + "path": "lib/rust/cr_lib/src/stages/write_pos_bam.rs", + "sha256": "06d9eeae56d73f798e0a3e9748c5fc01ccc9594bfa27548651da8d18637330e5", + "language": "Rust", + "lines": 569, + "truncated": false, + "block": 1, + "row": 11034 + }, + { + "path": "lib/rust/cr_lib/src/testing/correctness.rs", + "sha256": "82315a7253de6b0b968ab4897fa7dbfe62f6fdd230a27685e33e5ca87c1f7bfb", + "language": "Rust", + "lines": 322, + "truncated": false, + "block": 1, + "row": 10971 + }, + { + "path": "lib/rust/cr_lib/src/testing/mod.rs", + "sha256": "7031497c85e290397c920409d5236fd5d5d072193305a5a5dcfc3c828deea4ec", + "language": "Rust", + "lines": 9, + "truncated": false, + "block": 1, + "row": 10638 + }, + { + "path": "lib/rust/cr_lib/src/testing/tools.rs", + "sha256": "9535d32cbec5d6d48f89a1e606e119acba5dd14e2b51c7133c7d96e6768edf81", + "language": "Rust", + "lines": 139, + "truncated": false, + "block": 1, + "row": 10824 + }, + { + "path": "lib/rust/cr_lib/src/types.rs", + "sha256": "9f2600153ff2045e45142658019ac3bc7b9b63a56d968d03ea11c5961ad1e0e7", + "language": "Rust", + "lines": 182, + "truncated": false, + "block": 1, + "row": 10881 + }, + { + "path": "lib/rust/cr_lib/src/utils.rs", + "sha256": "ad6ee291a2f0e8e92115024d9ce7e09392b002afb9d92759a3ec72c7cdcf7c47", + "language": "Rust", + "lines": 67, + "truncated": false, + "block": 1, + "row": 10727 + }, + { + "path": "lib/rust/cr_types/src/action_timer.rs", + "sha256": "021e671fcb765c88049945f466804978d61298fa1448c48f244afce36ca7cc9a", + "language": "Rust", + "lines": 101, + "truncated": false, + "block": 1, + "row": 10761 + }, + { + "path": "lib/rust/cr_types/src/aggr.rs", + "sha256": "bdff1709aef6101c68b9d46d66613856e23851c0706109287b896e81c0f45da0", + "language": "Rust", + "lines": 25, + "truncated": false, + "block": 1, + "row": 10667 + }, + { + "path": "lib/rust/cr_types/src/barcode_index.rs", + "sha256": "6cbbc4de0c5bb519e1d744f2f86b43c09c6bd023a11a2dc404ef663bb9d0f6f6", + "language": "Rust", + "lines": 603, + "truncated": false, + "block": 1, + "row": 11040 + }, + { + "path": "lib/rust/cr_types/src/cell_annotation.rs", + "sha256": "e8c324355cacf26361c70f2f51fceb9d0880bf8ec729427a14a8c53cb9ed4fbd", + "language": "Rust", + "lines": 47, + "truncated": false, + "block": 1, + "row": 10693 + }, + { + "path": "lib/rust/cr_types/src/chemistry/adapter.rs", + "sha256": "4c4f9dee1d5c257b26f4fb9638063561108ed51bb101273657181f899adcfc06", + "language": "Rust", + "lines": 233, + "truncated": false, + "block": 1, + "row": 10916 + }, + { + "path": "lib/rust/cr_types/src/chemistry/chemistry_defs.rs", + "sha256": "b4789b4e898f4263db3be31193be39e1c32bcbf2266e60d1f90b786a0a76d052", + "language": "Rust", + "lines": 79, + "truncated": false, + "block": 1, + "row": 10755 + }, + { + "path": "lib/rust/cr_types/src/chemistry/mod.rs", + "sha256": "4777e19aa037e64832efc4b170d4f8197c61c6e01b2edfdfdbc5861e5fda02ee", + "language": "Rust", + "lines": 2530, + "truncated": false, + "block": 1, + "row": 11095 + }, + { + "path": "lib/rust/cr_types/src/clonotype.rs", + "sha256": "307aaa5f5d25d7655ad2b273e3092f3d0045f0827c7f57c0b581cbe42fce958d", + "language": "Rust", + "lines": 117, + "truncated": false, + "block": 1, + "row": 10791 + }, + { + "path": "lib/rust/cr_types/src/constants.rs", + "sha256": "01f362e1217c190defe0795e16eab320f15a02f06843948d670e0c2ec49b3744", + "language": "Rust", + "lines": 12, + "truncated": false, + "block": 1, + "row": 10651 + }, + { + "path": "lib/rust/cr_types/src/csv_parser.rs", + "sha256": "ca8efcae47d561b551c75afd0374955013630e4fc64b0ebbad24b541ff4a2648", + "language": "Rust", + "lines": 247, + "truncated": false, + "block": 1, + "row": 10924 + }, + { + "path": "lib/rust/cr_types/src/filtered_barcodes.rs", + "sha256": "a469d1671cfce67ffbc7ac403dfd431b0a89e6729d0a275ce896be1d6c48d3d0", + "language": "Rust", + "lines": 58, + "truncated": false, + "block": 1, + "row": 10706 + }, + { + "path": "lib/rust/cr_types/src/in_flight.rs", + "sha256": "f2ebfd413f7b75d8e89a43beba46f7c471809afddc3a16fff5ec2a53e48c8a9d", + "language": "Rust", + "lines": 254, + "truncated": false, + "block": 1, + "row": 10901 + }, + { + "path": "lib/rust/cr_types/src/lib.rs", + "sha256": "b2cee88f88d050c73056ee04b7e72b4bcd9b13807ddf115d28f3be8c62a425ee", + "language": "Rust", + "lines": 115, + "truncated": false, + "block": 1, + "row": 10778 + }, + { + "path": "lib/rust/cr_types/src/mempool.rs", + "sha256": "c530ffa9e154458c329424e9715b12015a2f76e355bc0bbf526f600e218e4a9f", + "language": "Rust", + "lines": 61, + "truncated": false, + "block": 1, + "row": 10712 + }, + { + "path": "lib/rust/cr_types/src/metrics_file.rs", + "sha256": "b39e35ef0d8034c84bf7b1f6343610f941393dfa91a9738c29b3bb7617bf496d", + "language": "Rust", + "lines": 74, + "truncated": false, + "block": 1, + "row": 10734 + }, + { + "path": "lib/rust/cr_types/src/probe_set.rs", + "sha256": "7af3a22e700da3c94b4a411ca37eae7baeb123eda63e62abb83014f55a654c79", + "language": "Rust", + "lines": 2207, + "truncated": false, + "block": 1, + "row": 11094 + }, + { + "path": "lib/rust/cr_types/src/reference/feature_checker.rs", + "sha256": "d327b1a691c7a3f8d9c5a86e9ec9e6c5e09b5304b6b080059af7d4f4d9e8d851", + "language": "Rust", + "lines": 51, + "truncated": false, + "block": 1, + "row": 10708 + }, + { + "path": "lib/rust/cr_types/src/reference/feature_extraction.rs", + "sha256": "a2f2eae3bced6f5a07444237ae44c0186b085cc61008b871a17b6bec7dac2101", + "language": "Rust", + "lines": 784, + "truncated": false, + "block": 1, + "row": 11057 + }, + { + "path": "lib/rust/cr_types/src/reference/feature_reference.rs", + "sha256": "c6278093239011e01431a6f669304720998cf85d117f4a84a1e56a9faeb9c686", + "language": "Rust", + "lines": 1238, + "truncated": false, + "block": 1, + "row": 11083 + }, + { + "path": "lib/rust/cr_types/src/reference/genome_of_chrom.rs", + "sha256": "dc2f30d4d971305e4fdfd9a5123c69d75a9fb0228f0f2310ffe7213a02cae9a0", + "language": "Rust", + "lines": 49, + "truncated": false, + "block": 1, + "row": 10726 + }, + { + "path": "lib/rust/cr_types/src/reference/mod.rs", + "sha256": "d9133218395008402021869124962378f85ec94b801e44f9f613e835ce16ec83", + "language": "Rust", + "lines": 11, + "truncated": false, + "block": 1, + "row": 10647 + }, + { + "path": "lib/rust/cr_types/src/reference/probe_set_reference.rs", + "sha256": "0bbe145171ffa37a8e140c7f07d90457986dfba7ee606ae89fc2556753346ee1", + "language": "Rust", + "lines": 456, + "truncated": false, + "block": 1, + "row": 11020 + }, + { + "path": "lib/rust/cr_types/src/reference/reference_info.rs", + "sha256": "2677afde6fc6bf0a0f22bb9dccc74d4a042e72a2999097f9db9ce721f39a3fb8", + "language": "Rust", + "lines": 272, + "truncated": false, + "block": 1, + "row": 10958 + }, + { + "path": "lib/rust/cr_types/src/rna_read.rs", + "sha256": "e384504d1dfc09d846a5ba9669a9b7bc546578e79d45ca7b50ab564668d2f573", + "language": "Rust", + "lines": 1938, + "truncated": false, + "block": 1, + "row": 11093 + }, + { + "path": "lib/rust/cr_types/src/sample_def.rs", + "sha256": "6d23219eafe79b7617ae6fbaa48c3195785ddff68094c35de1788f03a1814fdb", + "language": "Rust", + "lines": 704, + "truncated": false, + "block": 1, + "row": 11045 + }, + { + "path": "lib/rust/cr_types/src/serde_helpers.rs", + "sha256": "415380b501ed4826a583dc0a7f2de822825cdd1adfb045da15b12520b3e30d89", + "language": "Rust", + "lines": 64, + "truncated": false, + "block": 1, + "row": 10710 + }, + { + "path": "lib/rust/cr_types/src/spill_vec.rs", + "sha256": "b335e01e834fb30cf95332eeaf70adc0dab63bae55c0461b1bee6f4d14491b81", + "language": "Rust", + "lines": 184, + "truncated": false, + "block": 1, + "row": 10866 + }, + { + "path": "lib/rust/cr_types/src/target_panel_summary.rs", + "sha256": "9d07d791764418e02f0dde460c4ec7d4590bab34c283379adea52d0e3ec973cf", + "language": "Rust", + "lines": 48, + "truncated": false, + "block": 1, + "row": 10704 + }, + { + "path": "lib/rust/cr_types/src/types.rs", + "sha256": "58a77d068ccf2dad5eb911881e4c3d5135bca4832b3ba4ccd63aed627f6b8440", + "language": "Rust", + "lines": 1400, + "truncated": false, + "block": 1, + "row": 11079 + }, + { + "path": "lib/rust/cr_types/src/utils.rs", + "sha256": "7090f27dacc61246733c9b893f3688a162f7de74cc35cd2da7e77dbeba55dfa6", + "language": "Rust", + "lines": 131, + "truncated": false, + "block": 1, + "row": 10817 + }, + { + "path": "lib/rust/cr_types/src/websummary.rs", + "sha256": "2e0bcaaa6ac06c6b7f09d5faebcf711d93dc11d8b60537a8047d1bb39bb7fc73", + "language": "Rust", + "lines": 323, + "truncated": false, + "block": 1, + "row": 10963 + }, + { + "path": "lib/rust/cr_vdj/src/bin/cr_vdj.rs", + "sha256": "58714e62c463d279343d8d5d1656e6da8402780ee056e96e1d2ccae6a5e50f08", + "language": "Rust", + "lines": 79, + "truncated": false, + "block": 1, + "row": 10758 + }, + { + "path": "lib/rust/cr_vdj/src/clonotype_hist.rs", + "sha256": "d2f7eac5b1cb6fe5c4132576b15ff32aa0c2812245483fb775d01ed03cc7c55a", + "language": "Rust", + "lines": 165, + "truncated": false, + "block": 1, + "row": 10892 + }, + { + "path": "lib/rust/cr_vdj/src/clonotype_table.rs", + "sha256": "b63cc0cccd93a5d31ac85e55dbb2740ea6a223e271cfd4b8cfe598a25eb7b105", + "language": "Rust", + "lines": 102, + "truncated": false, + "block": 1, + "row": 10801 + }, + { + "path": "lib/rust/cr_vdj/src/copy_vdj_reference.rs", + "sha256": "828b8a2d046bf821728596d11530cf58008b58b157171fa4b3880c9f6640c942", + "language": "Rust", + "lines": 137, + "truncated": false, + "block": 1, + "row": 10827 + }, + { + "path": "lib/rust/cr_vdj/src/create_barcode_csv.rs", + "sha256": "5e5cdd34edb2fed2ca02193a614c264f58b5e172873bb954c4f6e0f1181d849f", + "language": "Rust", + "lines": 216, + "truncated": false, + "block": 1, + "row": 10897 + }, + { + "path": "lib/rust/cr_vdj/src/lib.rs", + "sha256": "ebe46250e16b2e8e5236c3586875a789c81bd742bfe0abf911ed1c768c7799ce", + "language": "Rust", + "lines": 29, + "truncated": false, + "block": 1, + "row": 10671 + }, + { + "path": "lib/rust/cr_vdj/src/make_vdj_plots.rs", + "sha256": "ff52106e547b3dbbbd48a6adaa95bca0d51a9f0932e85e529fc886674a806aa6", + "language": "Rust", + "lines": 112, + "truncated": false, + "block": 1, + "row": 10815 + }, + { + "path": "lib/rust/cr_vdj/src/matrix.rs", + "sha256": "db960f39093166cdb37c62c5f68182983e21f1e482b9f51c34fded5767ec01f5", + "language": "Rust", + "lines": 106, + "truncated": false, + "block": 1, + "row": 10772 + }, + { + "path": "lib/rust/cr_vdj/src/summarize_vdj_filters.rs", + "sha256": "6f227b82342b87994f73ceba0fba9fa87c094b335f13eb8cdffca19e0985670a", + "language": "Rust", + "lines": 1145, + "truncated": false, + "block": 1, + "row": 11076 + }, + { + "path": "lib/rust/cr_websummary/src/alert.rs", + "sha256": "f80eb67fd79f250367100672f06be4e70643073485245307fae49212c0fef33a", + "language": "Rust", + "lines": 60, + "truncated": false, + "block": 1, + "row": 10725 + }, + { + "path": "lib/rust/cr_websummary/src/lib.rs", + "sha256": "1121846b3a3a4e8081ec183ea76d77001f1ff3e6a372ceafaa6a3490d565f4da", + "language": "Rust", + "lines": 568, + "truncated": false, + "block": 1, + "row": 11011 + }, + { + "path": "lib/rust/cr_websummary/src/multi/antigen.rs", + "sha256": "83288f792dcc5b3adba1f9c2f4aaa42bd0b5dae073fbc249ca017ec7ce5276da", + "language": "Rust", + "lines": 343, + "truncated": false, + "block": 1, + "row": 10972 + }, + { + "path": "lib/rust/cr_websummary/src/multi/metrics.rs", + "sha256": "93e13bac531d0413b315a5d8cbd3852717fed3c9887d6fdb4495155a3fa7ca5b", + "language": "Rust", + "lines": 610, + "truncated": false, + "block": 1, + "row": 11035 + }, + { + "path": "lib/rust/cr_websummary/src/multi/mod.rs", + "sha256": "f0a8122baec6f1525ca2822bf584c79349575277a003379da33d6b0d97412ab9", + "language": "Rust", + "lines": 8, + "truncated": false, + "block": 1, + "row": 10629 + }, + { + "path": "lib/rust/cr_websummary/src/multi/plots.rs", + "sha256": "e4953462562dca3827ff10d7b1b55445e10cc893b1a42f42296b513dd7ab891a", + "language": "Rust", + "lines": 383, + "truncated": false, + "block": 1, + "row": 11015 + }, + { + "path": "lib/rust/cr_websummary/src/multi/websummary.rs", + "sha256": "e75464c236cdeb1cafea24ec545bbcd8175ff9ac2de76cdaa18884f7f96a2d57", + "language": "Rust", + "lines": 1246, + "truncated": false, + "block": 1, + "row": 11082 + }, + { + "path": "lib/rust/cr_websummary/src/multi/websummary_vdj.rs", + "sha256": "182a3aa4c1a77b7e2bf18d7a861fc3d50efa0e26e9ace9e9bff8ad444b23a086", + "language": "Rust", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10804 + }, + { + "path": "lib/rust/cr_websummary/src/value.rs", + "sha256": "cba07c50ed4b720feafbc3e4e754aa5aee61aaaed82dd7126e204a24e27efc35", + "language": "Rust", + "lines": 59, + "truncated": false, + "block": 1, + "row": 10703 + }, + { + "path": "lib/rust/cr_wrap/src/annotate.rs", + "sha256": "b73a9fabfbb41b1bb16e518be07b12fac07ad918335b3461bec53b37f295f08a", + "language": "Rust", + "lines": 28, + "truncated": false, + "block": 1, + "row": 10674 + }, + { + "path": "lib/rust/cr_wrap/src/arc/aggr.rs", + "sha256": "fd3ab09d4ab83dfe042803e4bfadce18189e7bdf8b95837c81ba9add5dbab932", + "language": "Rust", + "lines": 264, + "truncated": false, + "block": 1, + "row": 10948 + }, + { + "path": "lib/rust/cr_wrap/src/arc/count.rs", + "sha256": "8cb6197d318e3141810f508b115b0731880b9641f2a065c8ca04864b500140c0", + "language": "Rust", + "lines": 244, + "truncated": false, + "block": 1, + "row": 10950 + }, + { + "path": "lib/rust/cr_wrap/src/arc/mod.rs", + "sha256": "b04bcb18c075686e2af944a8334b62fbc8a665ed68e5a071da923e87afc39519", + "language": "Rust", + "lines": 8, + "truncated": false, + "block": 1, + "row": 10627 + }, + { + "path": "lib/rust/cr_wrap/src/arc/reanalyze.rs", + "sha256": "7df8f956989545f36f83f8e9a94cb5f31fe825e6be0b769d484dab43ad896980", + "language": "Rust", + "lines": 304, + "truncated": false, + "block": 1, + "row": 10964 + }, + { + "path": "lib/rust/cr_wrap/src/arc/testrun.rs", + "sha256": "fb6c418792344297bb25c54d78de20b48d24c35d8ff7bd801d0e0781b753f3b3", + "language": "Rust", + "lines": 82, + "truncated": false, + "block": 1, + "row": 10756 + }, + { + "path": "lib/rust/cr_wrap/src/arc/types.rs", + "sha256": "171d9c1d874496b5ce749b1c60ac46e7b66bc02a879084b4237142a11d5ed2c7", + "language": "Rust", + "lines": 75, + "truncated": false, + "block": 1, + "row": 10757 + }, + { + "path": "lib/rust/cr_wrap/src/bin/cellranger.rs", + "sha256": "7ee1f391d0dfcbebed5369c509a0ee5978c38ed2c1331de4e45b4f34d30ca322", + "language": "Rust", + "lines": 1010, + "truncated": false, + "block": 1, + "row": 11069 + }, + { + "path": "lib/rust/cr_wrap/src/chemistry_arg.rs", + "sha256": "5c722b7d612c5ce5455bf42533dfee6075ff0f0e8df9242aa97279b622eca52e", + "language": "Rust", + "lines": 100, + "truncated": false, + "block": 1, + "row": 10773 + }, + { + "path": "lib/rust/cr_wrap/src/cloud.rs", + "sha256": "be0f3c00539882ee303e75f30f4705a431542e71d77c9f7e6c9bd99dddd3d642", + "language": "Rust", + "lines": 60, + "truncated": false, + "block": 1, + "row": 10741 + }, + { + "path": "lib/rust/cr_wrap/src/create_bam_arg.rs", + "sha256": "3384d5d79912c1cc4efbfcf82b9a5b87575742e0becfda5084f8378b7d01c2c5", + "language": "Rust", + "lines": 55, + "truncated": false, + "block": 1, + "row": 10719 + }, + { + "path": "lib/rust/cr_wrap/src/env.rs", + "sha256": "37768a07e8325bb5923c9320598bf8e94edcb2ac8442ca7ea8c9b28f8eeb7aaf", + "language": "Rust", + "lines": 339, + "truncated": false, + "block": 1, + "row": 10965 + }, + { + "path": "lib/rust/cr_wrap/src/fastqs.rs", + "sha256": "9d003797370858b6e365241fb07af54ec2897402db4137085e4f787784a70082", + "language": "Rust", + "lines": 264, + "truncated": false, + "block": 1, + "row": 10937 + }, + { + "path": "lib/rust/cr_wrap/src/lib.rs", + "sha256": "3603bc7da48f5ba32141e81dbe6d021556432a4e173b649c43e7a0c0956c7fd0", + "language": "Rust", + "lines": 271, + "truncated": false, + "block": 1, + "row": 10915 + }, + { + "path": "lib/rust/cr_wrap/src/mkfastq.rs", + "sha256": "539367411ae2a73afe645f1c5c7c527e1c441cd16678ea97bdabc312543acb22", + "language": "Rust", + "lines": 44, + "truncated": false, + "block": 1, + "row": 10705 + }, + { + "path": "lib/rust/cr_wrap/src/mkref.rs", + "sha256": "773d5756f6d6f875da5329372aa80856ca08130eca1ec75e530aa78c22b04a2d", + "language": "Rust", + "lines": 321, + "truncated": false, + "block": 1, + "row": 10988 + }, + { + "path": "lib/rust/cr_wrap/src/mrp_args.rs", + "sha256": "9d8c7c09850109a60fc67e09a3c0ee3723309d5fc7b9bd4c966c3deecd0b7d32", + "language": "Rust", + "lines": 116, + "truncated": false, + "block": 1, + "row": 10806 + }, + { + "path": "lib/rust/cr_wrap/src/shared_cmd.rs", + "sha256": "548df9686bcbec34419c07b436c7623353890048795e67bdc3f9c76c5aaf9550", + "language": "Rust", + "lines": 127, + "truncated": false, + "block": 1, + "row": 10819 + }, + { + "path": "lib/rust/cr_wrap/src/telemetry.rs", + "sha256": "cd2750eb2b88b684fd33227767d225eef58e39fe7906f3a9a1bca36254c3f11e", + "language": "Rust", + "lines": 131, + "truncated": false, + "block": 1, + "row": 10829 + }, + { + "path": "lib/rust/cr_wrap/src/utils.rs", + "sha256": "6bb5562fd632e3b162d21d9c847753112bcb7e6fdb8ee83ac041f0f1f2a804c1", + "language": "Rust", + "lines": 205, + "truncated": false, + "block": 1, + "row": 10870 + }, + { + "path": "lib/rust/enclone_process/src/core/align_to_vdj_ref.rs", + "sha256": "90d0f950d80e3e4f95c5dd0df683053852dddee0e11a2ce172a90613cd0a4467", + "language": "Rust", + "lines": 363, + "truncated": false, + "block": 1, + "row": 10990 + }, + { + "path": "lib/rust/enclone_process/src/core/alignment.rs", + "sha256": "b5baa1962ccbb4c95628a35145ef75e4bc17128bdc4fdb5f935629841d7c7190", + "language": "Rust", + "lines": 657, + "truncated": false, + "block": 1, + "row": 11043 + }, + { + "path": "lib/rust/enclone_process/src/core/barcode_fate.rs", + "sha256": "386e90258f941e250179fcc2ce351dfdf3e64de4b6dc75710f43fa2fccea17dd", + "language": "Rust", + "lines": 72, + "truncated": false, + "block": 1, + "row": 10782 + }, + { + "path": "lib/rust/enclone_process/src/core/defs.rs", + "sha256": "111cc45e2126b12e5c37ddf6e329fb74cdc10ea851619be392b30ea95bdc86ac", + "language": "Rust", + "lines": 504, + "truncated": false, + "block": 1, + "row": 11017 + }, + { + "path": "lib/rust/enclone_process/src/core/enclone_structs.rs", + "sha256": "80218043382c85cdd08c243b2aaf766fb20608ffc0c03b8959fe1933a281e101", + "language": "Rust", + "lines": 27, + "truncated": false, + "block": 1, + "row": 10673 + }, + { + "path": "lib/rust/enclone_process/src/core/hcomp.rs", + "sha256": "adfc4989e77219bf7974dbe5247f1925cc4145a1c17df8857bbd767b03364cfd", + "language": "Rust", + "lines": 143, + "truncated": false, + "block": 1, + "row": 10861 + }, + { + "path": "lib/rust/enclone_process/src/core/join_one.rs", + "sha256": "3bee33c854ca823a59cf0c0c33e21132f8e85cb479454482a4a771a7f88244be", + "language": "Rust", + "lines": 575, + "truncated": false, + "block": 1, + "row": 11037 + }, + { + "path": "lib/rust/enclone_process/src/core/mod.rs", + "sha256": "6d665f042ce97df6e136ecf7a9d4ac91bd38611b25f4d82b3e02d651d0284316", + "language": "Rust", + "lines": 12, + "truncated": false, + "block": 1, + "row": 10644 + }, + { + "path": "lib/rust/enclone_process/src/core/opt_d.rs", + "sha256": "4a6c65c8a3fbbc353eadc804c19a29dc8ec9f1cfae25ece585ade9c3f08e4bae", + "language": "Rust", + "lines": 238, + "truncated": false, + "block": 1, + "row": 10893 + }, + { + "path": "lib/rust/enclone_process/src/disintegrate.rs", + "sha256": "664aba051b00f308caf0fbe2f0ad18f31bbebdb2900361b6144d9f74a46f0bf8", + "language": "Rust", + "lines": 105, + "truncated": false, + "block": 1, + "row": 10788 + }, + { + "path": "lib/rust/enclone_process/src/doublets.rs", + "sha256": "3dcfb85cdf4ec9c96b1652eadc1fc6aebb0402a99cf233b4bd69735f4fb44016", + "language": "Rust", + "lines": 238, + "truncated": false, + "block": 1, + "row": 10934 + }, + { + "path": "lib/rust/enclone_process/src/enclone/allele.rs", + "sha256": "07a0c38aa73fb57be9bf6ae589a16694093a4e3256ea8bd493d26c7fc13f0e6c", + "language": "Rust", + "lines": 491, + "truncated": false, + "block": 1, + "row": 11032 + }, + { + "path": "lib/rust/enclone_process/src/enclone/graph_filter.rs", + "sha256": "bdc7a3ab0e6a849d4cef81ab92f36d11ec6178278d11d0fb3a086a289ca02800", + "language": "Rust", + "lines": 377, + "truncated": false, + "block": 1, + "row": 11012 + }, + { + "path": "lib/rust/enclone_process/src/enclone/info.rs", + "sha256": "8a596119beaf5c3fad8934d3754382769b612f3f97153551f609da840a1bdfff", + "language": "Rust", + "lines": 315, + "truncated": false, + "block": 1, + "row": 10998 + }, + { + "path": "lib/rust/enclone_process/src/enclone/innate.rs", + "sha256": "11c2ba2074c8eedc694ef6718eb688a1722aba1542c18637fe047b3823853a0a", + "language": "Rust", + "lines": 251, + "truncated": false, + "block": 1, + "row": 10997 + }, + { + "path": "lib/rust/enclone_process/src/enclone/join.rs", + "sha256": "9a46c64973884f2d8a9aafdb783783be470a12f2774eacf67fe642b5dbcabe27", + "language": "Rust", + "lines": 162, + "truncated": false, + "block": 1, + "row": 10849 + }, + { + "path": "lib/rust/enclone_process/src/enclone/join2.rs", + "sha256": "416025fa77c123f31bebfa1976b4b4f71a17cf2a582c7bbec8636808146bb716", + "language": "Rust", + "lines": 73, + "truncated": false, + "block": 1, + "row": 10721 + }, + { + "path": "lib/rust/enclone_process/src/enclone/join_core.rs", + "sha256": "6fb0f3f111722e58789dfc6256299fe7b7a768b7e35b7f60b059fd2bbe2725dc", + "language": "Rust", + "lines": 40, + "truncated": false, + "block": 1, + "row": 10692 + }, + { + "path": "lib/rust/enclone_process/src/enclone/misc1.rs", + "sha256": "0af4ba5ca765862513a231c5c1a3e63a9e9c6540f44e0f1746f0fdeeff6b0b98", + "language": "Rust", + "lines": 177, + "truncated": false, + "block": 1, + "row": 10900 + }, + { + "path": "lib/rust/enclone_process/src/enclone/misc2.rs", + "sha256": "880c6b1a40ee58e68d986362490beb569eb3e07cf452d3ace16baf3df77628dc", + "language": "Rust", + "lines": 248, + "truncated": false, + "block": 1, + "row": 10941 + }, + { + "path": "lib/rust/enclone_process/src/enclone/misc3.rs", + "sha256": "a23385e9719ade01d158cb3e8b26cb9d20e93c21db53ea0748f4bd4939a89224", + "language": "Rust", + "lines": 28, + "truncated": false, + "block": 1, + "row": 10665 + }, + { + "path": "lib/rust/enclone_process/src/enclone/mod.rs", + "sha256": "b21d103ae73ec62db9b5c29693a6c885fc487433d8b826a86940e1548f6b6004", + "language": "Rust", + "lines": 45, + "truncated": false, + "block": 1, + "row": 10700 + }, + { + "path": "lib/rust/enclone_process/src/filter_umi.rs", + "sha256": "20f6de81423efca9dfdefddd637aa52fa7b55413639c9ace0b4e99467c849f44", + "language": "Rust", + "lines": 348, + "truncated": false, + "block": 1, + "row": 11004 + }, + { + "path": "lib/rust/enclone_process/src/flag_defective.rs", + "sha256": "70315e1ce140f7a04f46b4d882f939cf7ce259d91b043e37d144d75622fee38a", + "language": "Rust", + "lines": 250, + "truncated": false, + "block": 1, + "row": 10944 + }, + { + "path": "lib/rust/enclone_process/src/lib.rs", + "sha256": "3c51599166d9286e0ea8b7fa8b6e1f2203e8d570df667b44e1c747eb7132715a", + "language": "Rust", + "lines": 119, + "truncated": false, + "block": 1, + "row": 10780 + }, + { + "path": "lib/rust/enclone_process/src/merge_onesies.rs", + "sha256": "d4ff91ae076955c92d431533ac8d4c05fadd741b34cd780ae350d97d1d58c3fc", + "language": "Rust", + "lines": 111, + "truncated": false, + "block": 1, + "row": 10813 + }, + { + "path": "lib/rust/enclone_process/src/populate_features.rs", + "sha256": "b2db7f93dacb429c7375c4f830567455aadb5bba70a0e6d1c20f7e33fca31b7e", + "language": "Rust", + "lines": 66, + "truncated": false, + "block": 1, + "row": 10728 + }, + { + "path": "lib/rust/enclone_process/src/process/define_column_info.rs", + "sha256": "a36f4a2d86f5f392a8b9814c74457bda1f7bbfd57920bab04b78e66c7d138faf", + "language": "Rust", + "lines": 153, + "truncated": false, + "block": 1, + "row": 10860 + }, + { + "path": "lib/rust/enclone_process/src/process/define_mat.rs", + "sha256": "7e6fff3957f40ea46943cb0981d9c1a0071b506451f61a8e5ed1e582757205a4", + "language": "Rust", + "lines": 434, + "truncated": false, + "block": 1, + "row": 11013 + }, + { + "path": "lib/rust/enclone_process/src/process/delete_weaks.rs", + "sha256": "cc6a44fc0d205a490c44cec1f8df765aa2ae03da460fd1b5ba56f74412d88d9b", + "language": "Rust", + "lines": 50, + "truncated": false, + "block": 1, + "row": 10714 + }, + { + "path": "lib/rust/enclone_process/src/process/loupe.rs", + "sha256": "74ed131e3a1a14a68c4545c160f117cebc0627e6fe3096dc48d8256b8d21e5b9", + "language": "Rust", + "lines": 469, + "truncated": false, + "block": 1, + "row": 11024 + }, + { + "path": "lib/rust/enclone_process/src/process/mod.rs", + "sha256": "2b8a3d72f3c2763d69863d1ff79e7effd48ab0078ea2da39b50e7a96900da8f0", + "language": "Rust", + "lines": 8, + "truncated": false, + "block": 1, + "row": 10635 + }, + { + "path": "lib/rust/enclone_process/src/process/process_clonotypes.rs", + "sha256": "b76468e306671ac50ce6685409251c4a5337a70d74eb7af433b2e1c3fe139147", + "language": "Rust", + "lines": 231, + "truncated": false, + "block": 1, + "row": 10902 + }, + { + "path": "lib/rust/enclone_process/src/read_json.rs", + "sha256": "eaf211b0747cd542e3a7a4f5d142ccce7835348b30b3dbdd07539c01bef7c40a", + "language": "Rust", + "lines": 541, + "truncated": false, + "block": 1, + "row": 11029 + }, + { + "path": "lib/rust/enclone_process/src/some_filters.rs", + "sha256": "b09f42f7aaf1e4eaff2240acf17f0d4a3d40431dd60e528ecad42a2309e5d2d2", + "language": "Rust", + "lines": 319, + "truncated": false, + "block": 1, + "row": 10970 + }, + { + "path": "lib/rust/enclone_process/src/split_candidate_clonotypes.rs", + "sha256": "e5b1aad1865cc62e1562dda7b6c10fe4415695b0c44bb37abc0d3578951feac0", + "language": "Rust", + "lines": 183, + "truncated": false, + "block": 1, + "row": 10876 + }, + { + "path": "lib/rust/enclone_process/src/start.rs", + "sha256": "b8d18cba6cc7ec51ddb61780594eee96008447ab4c6d8eff08dd79470869d773", + "language": "Rust", + "lines": 596, + "truncated": false, + "block": 1, + "row": 11028 + }, + { + "path": "lib/rust/enclone_process/src/weak_chains.rs", + "sha256": "ddd02dce72f6b8550025da52de3f939e09bed7aba7a1c693603edead47b45654", + "language": "Rust", + "lines": 113, + "truncated": false, + "block": 1, + "row": 10808 + }, + { + "path": "lib/rust/enclone_proto/src/enclone.types.rs", + "sha256": "2de9bc511e73b4853ed860601a852c0838079221e36a1f4af2c4f92c9c05ca27", + "language": "Rust", + "lines": 517, + "truncated": false, + "block": 1, + "row": 11048 + }, + { + "path": "lib/rust/enclone_proto/src/lib.rs", + "sha256": "87c30b6250f422d4bdd40437e6dbeea61e213ec00081bcdc2731f1879ce826b0", + "language": "Rust", + "lines": 8, + "truncated": false, + "block": 1, + "row": 10633 + }, + { + "path": "lib/rust/enclone_proto/src/proto_io.rs", + "sha256": "2053120564638cb29f2fe0406f728d5d5d01feb2b78051bb4156ba46d3966e54", + "language": "Rust", + "lines": 269, + "truncated": false, + "block": 1, + "row": 10956 + }, + { + "path": "lib/rust/enclone_proto/src/types.rs", + "sha256": "4b38715603ec76612bc196e36cb269182e6d6c0ad98e1bf43720da983fc40ba4", + "language": "Rust", + "lines": 188, + "truncated": false, + "block": 1, + "row": 10851 + }, + { + "path": "lib/rust/equiv/src/lib.rs", + "sha256": "bd3594b8ba3cedb6effd484744ea975de4d438cdf5dc1d2531197d07d8e27e47", + "language": "Rust", + "lines": 369, + "truncated": false, + "block": 1, + "row": 10994 + }, + { + "path": "lib/rust/fast_utils/src/barcode_counter.rs", + "sha256": "aeb50bbf5590f88412a29d35f5d140656bedc38ebc86c475a8773c8d1039d183", + "language": "Rust", + "lines": 186, + "truncated": false, + "block": 1, + "row": 10896 + }, + { + "path": "lib/rust/fast_utils/src/barcode_index.rs", + "sha256": "11d7b1bda35a1f2ef7e9cac17c45bba57b96e19980e3938064d9f257da2cc330", + "language": "Rust", + "lines": 93, + "truncated": false, + "block": 1, + "row": 10750 + }, + { + "path": "lib/rust/fast_utils/src/compute_extra_multiplexing_metrics.rs", + "sha256": "81fb1c0810c8d3d9b405a73afb655f30d8b004473a01fffcf6098b0d6fa50ff0", + "language": "Rust", + "lines": 224, + "truncated": false, + "block": 1, + "row": 10926 + }, + { + "path": "lib/rust/fast_utils/src/diff_exp.rs", + "sha256": "5602ed0c76625b6e3bcc2586ab410e21d000c0c8eb4011094aa74e6ca07a149a", + "language": "Rust", + "lines": 722, + "truncated": false, + "block": 1, + "row": 11061 + }, + { + "path": "lib/rust/fast_utils/src/feature_collection_geojson_validator.rs", + "sha256": "a68ac63e61a3776dbf0f87cfe0584b1637652f2dc07623d20c488fbca69b2e0d", + "language": "Rust", + "lines": 377, + "truncated": false, + "block": 1, + "row": 10947 + }, + { + "path": "lib/rust/fast_utils/src/filtered_barcodes.rs", + "sha256": "0486450dad8f86189a588faeccadec6eaa000ae12ab1180b1ebce6d6ff806e28", + "language": "Rust", + "lines": 292, + "truncated": false, + "block": 1, + "row": 10952 + }, + { + "path": "lib/rust/fast_utils/src/gdna_analysis.rs", + "sha256": "36611b1bce3d4e00e7187d38a465c092935961375602a50cb57eb509ccbe3712", + "language": "Rust", + "lines": 61, + "truncated": false, + "block": 1, + "row": 10729 + }, + { + "path": "lib/rust/fast_utils/src/lib.rs", + "sha256": "a301c03d3f99fd461ecf8295d5a7056675071abbe18dc41bb7ab29a08db19557", + "language": "Rust", + "lines": 286, + "truncated": false, + "block": 1, + "row": 10967 + }, + { + "path": "lib/rust/fast_utils/src/matrix.rs", + "sha256": "83bb77b576d4da47102c469bc47a90d79333f2b62fd14f815f91c41cdf0b879a", + "language": "Rust", + "lines": 86, + "truncated": false, + "block": 1, + "row": 10793 + }, + { + "path": "lib/rust/fast_utils/src/molecule_info.rs", + "sha256": "f20bb4876b8488c2aa1f807e938645c5ff961eb64afb981f9523dd11cb648ba8", + "language": "Rust", + "lines": 146, + "truncated": false, + "block": 1, + "row": 10839 + }, + { + "path": "lib/rust/fast_utils/src/multi_graph.rs", + "sha256": "64e1d90466259d461492779205f91997bd36866ed02ff4a147fe732160e31596", + "language": "Rust", + "lines": 116, + "truncated": false, + "block": 1, + "row": 10807 + }, + { + "path": "lib/rust/fastq_set/src/adapter_trimmer.rs", + "sha256": "e222a56febb7333d1a1f55afbb799a52e399be7be2ff7dc0215464b31352ef02", + "language": "Rust", + "lines": 1116, + "truncated": false, + "block": 1, + "row": 11073 + }, + { + "path": "lib/rust/fastq_set/src/adapters.rs", + "sha256": "334f25b84eec1a522be1f083802723cf764ad4af6f12b0486f31ff8db52a2d84", + "language": "Rust", + "lines": 252, + "truncated": false, + "block": 1, + "row": 10957 + }, + { + "path": "lib/rust/fastq_set/src/array.rs", + "sha256": "ab662930e53b49ca1759e5ff84f05f00e3636e3df41faaf7ac7652bbfa59f3b8", + "language": "Rust", + "lines": 331, + "truncated": false, + "block": 1, + "row": 10925 + }, + { + "path": "lib/rust/fastq_set/src/background_iterator.rs", + "sha256": "35663b11a3bde61b75dae6e9f647c34539cc49a51246c1d13e5bf8206a084b12", + "language": "Rust", + "lines": 252, + "truncated": false, + "block": 1, + "row": 10908 + }, + { + "path": "lib/rust/fastq_set/src/filenames/bcl2fastq.rs", + "sha256": "70d4cd3845b6fd014e1e7f784b349b35dd9ebe1f9f2e2661d5aadcbdf74ce97f", + "language": "Rust", + "lines": 485, + "truncated": false, + "block": 1, + "row": 11019 + }, + { + "path": "lib/rust/fastq_set/src/filenames/bcl_processor.rs", + "sha256": "81a6de37ebae48cc53bedcc1e2ac47b0a14f147fcafb79930c3d9b813009ef3e", + "language": "Rust", + "lines": 315, + "truncated": false, + "block": 1, + "row": 10954 + }, + { + "path": "lib/rust/fastq_set/src/filenames/fastq_dir.rs", + "sha256": "185b4b2be03630721612cb4ca185d680ac7f3f74c83aec70c5d9ca4c23ba56a6", + "language": "Rust", + "lines": 204, + "truncated": false, + "block": 1, + "row": 10890 + }, + { + "path": "lib/rust/fastq_set/src/filenames/mod.rs", + "sha256": "a9b5dfe604f094d7b2214a95798eba86a0502799ebdb3bc72a6c7b496944e97f", + "language": "Rust", + "lines": 50, + "truncated": false, + "block": 1, + "row": 10701 + }, + { + "path": "lib/rust/fastq_set/src/filenames/sbx.rs", + "sha256": "ac5164c566e04686278d6b708eab8524ca5ab681310c17312adc418053f2a6cc", + "language": "Rust", + "lines": 43, + "truncated": false, + "block": 1, + "row": 10696 + }, + { + "path": "lib/rust/fastq_set/src/illumina_header_info.rs", + "sha256": "1747a250c97b4aea6abcf948a989c416544d9231e2074c8c7981b0953446c782", + "language": "Rust", + "lines": 152, + "truncated": false, + "block": 1, + "row": 10816 + }, + { + "path": "lib/rust/fastq_set/src/length_trim_iter.rs", + "sha256": "64761cdac74ebb1df0619b8cc983c983f07ffbd7ba94f2ef2d48bea0784e5a1a", + "language": "Rust", + "lines": 85, + "truncated": false, + "block": 1, + "row": 10794 + }, + { + "path": "lib/rust/fastq_set/src/lib.rs", + "sha256": "2fb798a618f536bab8d257007e9cde17eac28ad9efd5eee337bfb69f7faa4bf5", + "language": "Rust", + "lines": 63, + "truncated": false, + "block": 1, + "row": 10724 + }, + { + "path": "lib/rust/fastq_set/src/long_read_adapter_trimmer.rs", + "sha256": "d9fb9d40163b8530d214ab7d9d5c29f44a0ccc9e8c0166528cb098584ee31060", + "language": "Rust", + "lines": 1052, + "truncated": false, + "block": 1, + "row": 11077 + }, + { + "path": "lib/rust/fastq_set/src/metric_utils.rs", + "sha256": "c1c0befa97aea96feed372e0bffd1231dfd2bb591cc4c044dabaf1f6b605d82f", + "language": "Rust", + "lines": 20, + "truncated": false, + "block": 1, + "row": 10652 + }, + { + "path": "lib/rust/fastq_set/src/read_pair.rs", + "sha256": "3f35f18bee0e0ee0050294672e9558c2f6a262bd5de716858d1ecc48315d40af", + "language": "Rust", + "lines": 1296, + "truncated": false, + "block": 1, + "row": 11081 + }, + { + "path": "lib/rust/fastq_set/src/read_pair_iter.rs", + "sha256": "0721dfea696c58358e6e5c483c1d3e3b9262ee61098611b32e8d2a0f3c73b9d1", + "language": "Rust", + "lines": 956, + "truncated": false, + "block": 1, + "row": 11068 + }, + { + "path": "lib/rust/fastq_set/src/sample_index_map.rs", + "sha256": "7545c318864d0114c47e9d6ce28ad4387a96550a218882c4c387041e2a011925", + "language": "Rust", + "lines": 1693, + "truncated": false, + "block": 1, + "row": 11091 + }, + { + "path": "lib/rust/fastq_set/src/squality.rs", + "sha256": "f558aef8d7b1f22be952449748dfd670bb0669ee43f4cc5b1709c302d7fcfcf6", + "language": "Rust", + "lines": 106, + "truncated": false, + "block": 1, + "row": 10790 + }, + { + "path": "lib/rust/fastq_set/src/sseq.rs", + "sha256": "36fc9768abfda3be095f41693e92b5f6a971a0e178ea5a3cf353dba240fa505e", + "language": "Rust", + "lines": 717, + "truncated": false, + "block": 1, + "row": 11042 + }, + { + "path": "lib/rust/graph_simple/src/lib.rs", + "sha256": "0db1ec7503de63f4ff7fb8a9fb21adb81b37c9eb521efd5a1de74ce0dfa870a9", + "language": "Rust", + "lines": 245, + "truncated": false, + "block": 1, + "row": 10903 + }, + { + "path": "lib/rust/hyperbase/src/lib.rs", + "sha256": "16ab7fc6edefb8af010588d55708d81caeaf91a0e740e3f4456faab315112d43", + "language": "Rust", + "lines": 633, + "truncated": false, + "block": 1, + "row": 11047 + }, + { + "path": "lib/rust/io_utils/src/lib.rs", + "sha256": "62ba76052e7d1219243ca2566270655c4fbda1a2771b397d7009143a36c4fb86", + "language": "Rust", + "lines": 39, + "truncated": false, + "block": 1, + "row": 10699 + }, + { + "path": "lib/rust/jibes_o3/src/lib.rs", + "sha256": "7fdbc0d1a03a43bb7f8d67c775746d559574eb9928c7e73a2cb39034f7bdaa97", + "language": "Rust", + "lines": 689, + "truncated": false, + "block": 1, + "row": 11051 + }, + { + "path": "lib/rust/json_report_derive/src/lib.rs", + "sha256": "10d74a44b81c3c12c2962b6cfca061ce985388e265e2909f305ab7e038441f1f", + "language": "Rust", + "lines": 258, + "truncated": false, + "block": 1, + "row": 10922 + }, + { + "path": "lib/rust/kmer_lookup/src/lib.rs", + "sha256": "61d256d908de56eebf1d5c72d0f243e1185434eb9af5222f843a11552146f306", + "language": "Rust", + "lines": 63, + "truncated": false, + "block": 1, + "row": 10717 + }, + { + "path": "lib/rust/metric/src/collections.rs", + "sha256": "d9dc8ec3dfcade9fd030cadbea125d6282fd0d51598e4f4ea1e32b2d21680341", + "language": "Rust", + "lines": 204, + "truncated": false, + "block": 1, + "row": 10883 + }, + { + "path": "lib/rust/metric/src/count_metric.rs", + "sha256": "af2d0a9cb3e12c6c366b5a7cd313269c31d20de03c97e2819765a9ce59af89ad", + "language": "Rust", + "lines": 174, + "truncated": false, + "block": 1, + "row": 10842 + }, + { + "path": "lib/rust/metric/src/histogram.rs", + "sha256": "43ef90378f8ed9e22d5109dfcf4215370bbd31dbebf7410ad6f295a3e46e9aa1", + "language": "Rust", + "lines": 913, + "truncated": false, + "block": 1, + "row": 11055 + }, + { + "path": "lib/rust/metric/src/lib.rs", + "sha256": "ae38ee42d508ad3ba0fa1571e73de08ab4f2cfe67530fc79961eb7673b0e1d05", + "language": "Rust", + "lines": 856, + "truncated": false, + "block": 1, + "row": 11058 + }, + { + "path": "lib/rust/metric/src/mean_metric.rs", + "sha256": "91a9fa40d90610b4ef30d8f68c2009a96122760cff53c87830b2749905788082", + "language": "Rust", + "lines": 132, + "truncated": false, + "block": 1, + "row": 10803 + }, + { + "path": "lib/rust/metric/src/num.rs", + "sha256": "a297669210a4283e74f8e49e3b6ed94cfdffcf1142280798b6ab0542c41f3e52", + "language": "Rust", + "lines": 27, + "truncated": false, + "block": 1, + "row": 10666 + }, + { + "path": "lib/rust/metric/src/option.rs", + "sha256": "845458dfe60d255f2d8d6841cecce895ba37612d3d8bb39187bc9c7a57ee2bdd", + "language": "Rust", + "lines": 79, + "truncated": false, + "block": 1, + "row": 10736 + }, + { + "path": "lib/rust/metric/src/percent_metric.rs", + "sha256": "df58e7e073ae298ed2fcfa8ae3ca6ec26241d090d64515adf0fa48ed0f4fed7d", + "language": "Rust", + "lines": 210, + "truncated": false, + "block": 1, + "row": 10874 + }, + { + "path": "lib/rust/metric_derive/src/lib.rs", + "sha256": "4b3f294487498be7d7309645154c16acde42f1602c51e1f49a4b40d2ba8b7fb6", + "language": "Rust", + "lines": 171, + "truncated": false, + "block": 1, + "row": 10872 + }, + { + "path": "lib/rust/multi/src/barcode_sample_assignment.rs", + "sha256": "d7265db68add51e51024522423c155d565d2e3e08a4635eeb6498bfc0a6d8d80", + "language": "Rust", + "lines": 458, + "truncated": false, + "block": 1, + "row": 11016 + }, + { + "path": "lib/rust/multi/src/cmo_set/mod.rs", + "sha256": "1c6756b19aadbcf6d726d0a9278c4a98c6da191558097c20f5eada1a9a063a58", + "language": "Rust", + "lines": 71, + "truncated": false, + "block": 1, + "row": 10718 + }, + { + "path": "lib/rust/multi/src/config/csv.rs", + "sha256": "d59f11dab0c8fa939841e526e1fba4f1faffef738a1f41f1de1415cdf34d235a", + "language": "Rust", + "lines": 255, + "truncated": false, + "block": 1, + "row": 10939 + }, + { + "path": "lib/rust/multi/src/config/mod.rs", + "sha256": "6e52992a803d86188473c685686fd89758f8ee61bd0e466248b90f2547affe7b", + "language": "Rust", + "lines": 5363, + "truncated": false, + "block": 1, + "row": 11099 + }, + { + "path": "lib/rust/multi/src/config/parse.rs", + "sha256": "43e6992b6a21e5967913f78cc5b65006d4f6826b2bccceef66758a79836e96d1", + "language": "Rust", + "lines": 404, + "truncated": false, + "block": 1, + "row": 10989 + }, + { + "path": "lib/rust/multi/src/config/preflight.rs", + "sha256": "83c9d7a085ddd96d6c42d178f58d9b9f7a97bd3fd6f1478c0d819a9a9ff56bf0", + "language": "Rust", + "lines": 1387, + "truncated": false, + "block": 1, + "row": 11086 + }, + { + "path": "lib/rust/multi/src/config/scsv.rs", + "sha256": "a5775fe02afb273535dc31a02bd88ccded12a735a9509e01f094be3f3fb4ef0d", + "language": "Rust", + "lines": 514, + "truncated": false, + "block": 1, + "row": 11003 + }, + { + "path": "lib/rust/multi/src/deprecated_os.rs", + "sha256": "a56c9d3b1bda531fd1524b7cfcd55f7e61a292babb8088dc3aa8f092f20210ef", + "language": "Rust", + "lines": 205, + "truncated": false, + "block": 1, + "row": 10917 + }, + { + "path": "lib/rust/multi/src/lib.rs", + "sha256": "e673012768335b9398392bb020c736e99ea553cda540b730d476086c73e6ea0b", + "language": "Rust", + "lines": 10, + "truncated": false, + "block": 1, + "row": 10632 + }, + { + "path": "lib/rust/multiconfig_converter/src/lib.rs", + "sha256": "85dffaec542fa71e6d9b07751f2c784446956d82a85e7abe281196d67aca2a04", + "language": "Rust", + "lines": 69, + "truncated": false, + "block": 1, + "row": 10740 + }, + { + "path": "lib/rust/par_proc/src/lib.rs", + "sha256": "be82577b5b96fd1b494673fa5aaeab2262b6b8064fa78271ca3cf2cc27c7d49c", + "language": "Rust", + "lines": 6, + "truncated": false, + "block": 1, + "row": 10630 + }, + { + "path": "lib/rust/par_proc/src/par_proc.rs", + "sha256": "afe24dfcfa96670d88c8e360eb30e6ec1015305942b561fe1cf978f81dc8bb6d", + "language": "Rust", + "lines": 461, + "truncated": false, + "block": 1, + "row": 11014 + }, + { + "path": "lib/rust/pyanyhow/src/lib.rs", + "sha256": "8e097169b33930d8eba98ceefa9df1bda525aa5b13f0ca4c1494ea66e0eb24b9", + "language": "Rust", + "lines": 27, + "truncated": false, + "block": 1, + "row": 10657 + }, + { + "path": "lib/rust/slide_design/src/lib.rs", + "sha256": "a9bff7c7002ad8bc38b2f486774d244d6212b31cd523665abc7f9cbc7575cba8", + "language": "Rust", + "lines": 10, + "truncated": false, + "block": 1, + "row": 10639 + }, + { + "path": "lib/rust/slide_design/src/stubs/mod.rs", + "sha256": "0137845d2ea2ba738166fb2ef0922b4ecfae77a46c064193fdf204284f7d49b7", + "language": "Rust", + "lines": 32, + "truncated": false, + "block": 1, + "row": 10668 + }, + { + "path": "lib/rust/souporcell/src/lib.rs", + "sha256": "21d9119c7269d66a1f8f389f5548aa303f292232a1f6619bbc083484f8c1d4d0", + "language": "Rust", + "lines": 158, + "truncated": false, + "block": 1, + "row": 10841 + }, + { + "path": "lib/rust/souporcell/src/souporcell.rs", + "sha256": "070e5621c1a07db980fe522c91ad5fab5f4a068c42a42b581e8dcbda603aca43", + "language": "Rust", + "lines": 476, + "truncated": false, + "block": 1, + "row": 11023 + }, + { + "path": "lib/rust/stats/src/lib.rs", + "sha256": "ed5e34e3a6ebef75359f86dff8906935621e36791c9d85198bcf42989ce4b9f7", + "language": "Rust", + "lines": 19, + "truncated": false, + "block": 1, + "row": 10654 + }, + { + "path": "lib/rust/stats/src/nx.rs", + "sha256": "a6732de8000ca27287597287bf23e59137674ac885a8c32c3dd6cf6086023d0b", + "language": "Rust", + "lines": 158, + "truncated": false, + "block": 1, + "row": 10828 + }, + { + "path": "lib/rust/stats/src/reservoir_sampling.rs", + "sha256": "182342b5090d426b38ddc21f105d61eb98a1ac93838eeb5b9926c1e6c1583649", + "language": "Rust", + "lines": 100, + "truncated": false, + "block": 1, + "row": 10771 + }, + { + "path": "lib/rust/string_utils/src/lib.rs", + "sha256": "8728924a2da3837061695f61bf53273c8332bd546816893c30dc8bb18529577b", + "language": "Rust", + "lines": 72, + "truncated": false, + "block": 1, + "row": 10754 + }, + { + "path": "lib/rust/transcriptome/src/bed12.rs", + "sha256": "51acd83c47b9e2b5654a2c4b2a29c048926b303dd8b27fde9919aa0e3b1d63fd", + "language": "Rust", + "lines": 161, + "truncated": false, + "block": 1, + "row": 10966 + }, + { + "path": "lib/rust/transcriptome/src/bin/gtf_to_gene_index.rs", + "sha256": "f0b69e568712febc88505cfb89c06b6fab1838e3ffee64deabeb6f59a4554ce8", + "language": "Rust", + "lines": 33, + "truncated": false, + "block": 1, + "row": 10681 + }, + { + "path": "lib/rust/transcriptome/src/lib.rs", + "sha256": "e21d6fa059a5f8a0920fe42f344ac0a77b1306e59ffdf53679354d66475c62cd", + "language": "Rust", + "lines": 13, + "truncated": false, + "block": 1, + "row": 10643 + }, + { + "path": "lib/rust/transcriptome/src/parse_gtf.rs", + "sha256": "38b1b24282edfcb124294cf8e313adbfd4ce24967cb2768238a68d024f135aea", + "language": "Rust", + "lines": 365, + "truncated": false, + "block": 1, + "row": 10992 + }, + { + "path": "lib/rust/transcriptome/src/python_gene_index.rs", + "sha256": "6496db7c93e7ea0511844194b260c70c6e3edeef21ae3f34c4e3d4d20ed5febd", + "language": "Rust", + "lines": 218, + "truncated": false, + "block": 1, + "row": 10898 + }, + { + "path": "lib/rust/transcriptome/src/transcript_index.rs", + "sha256": "f3187f29ab565615f9d2b08d49751816c87c5e41c22c4a22f63196f4eef03bf9", + "language": "Rust", + "lines": 84, + "truncated": false, + "block": 1, + "row": 10738 + }, + { + "path": "lib/rust/transcriptome/src/transcript_sequence.rs", + "sha256": "cf7ea8a7a63c17c1c70a7718fcd11833fbfbb7db5b38d617445080c66777440e", + "language": "Rust", + "lines": 122, + "truncated": false, + "block": 1, + "row": 10796 + }, + { + "path": "lib/rust/transcriptome/src/transcriptome.rs", + "sha256": "c4ea51fb0b1143c294f02635260812089278be428bcf1af780af6380a184e755", + "language": "Rust", + "lines": 562, + "truncated": false, + "block": 1, + "row": 11036 + }, + { + "path": "lib/rust/tx_annotation/src/lib.rs", + "sha256": "18f79c5e80428220d57f3dbef5f61f18304a618e45f1ee812228de38f75cd3e2", + "language": "Rust", + "lines": 6, + "truncated": false, + "block": 1, + "row": 10625 + }, + { + "path": "lib/rust/tx_annotation/src/mark_dups.rs", + "sha256": "deab223caec537c8c493f542e0b450ff6a5d6799843084cf34a368320f979b0b", + "language": "Rust", + "lines": 429, + "truncated": false, + "block": 1, + "row": 11008 + }, + { + "path": "lib/rust/tx_annotation/src/read.rs", + "sha256": "711b13d166014c1e7485a72ae79799f107c97b6d5d9318c0603d8cb7a327d4af", + "language": "Rust", + "lines": 1631, + "truncated": false, + "block": 1, + "row": 11090 + }, + { + "path": "lib/rust/tx_annotation/src/transcript.rs", + "sha256": "2aeaa5d5ac58ff1d0b01ecb7d7117fd46e2d17ad1f404cf06045c549c6ef9478", + "language": "Rust", + "lines": 1282, + "truncated": false, + "block": 1, + "row": 11078 + }, + { + "path": "lib/rust/tx_annotation/src/visitor.rs", + "sha256": "ad92b5fdd1f524f9da753487a1dff339721d9e80cc013d1ba58a067bf95bb078", + "language": "Rust", + "lines": 253, + "truncated": false, + "block": 1, + "row": 10979 + }, + { + "path": "lib/rust/umi/src/info.rs", + "sha256": "49af62349206e9bfb0a17ca0c6606f2faa18539a641eb3a0e70c3a23694e6d70", + "language": "Rust", + "lines": 20, + "truncated": false, + "block": 1, + "row": 10650 + }, + { + "path": "lib/rust/umi/src/lib.rs", + "sha256": "9a6363f6b4fc2882529b639abcb4a5176feaf96840642a276bcd8342352e0980", + "language": "Rust", + "lines": 157, + "truncated": false, + "block": 1, + "row": 10832 + }, + { + "path": "lib/rust/vartrix/src/lib.rs", + "sha256": "4bf8f2e6ca86a8e70d2dffed11de4ead52c2c046b3d25cc354b819a3077f7838", + "language": "Rust", + "lines": 1105, + "truncated": false, + "block": 1, + "row": 11071 + }, + { + "path": "lib/rust/vdj_ann/src/align.rs", + "sha256": "fdbac58d1c32d0746ba99ef7ed03754c3d75ea1e7a88efd0e4eb1c8177de3006", + "language": "Rust", + "lines": 12, + "truncated": false, + "block": 1, + "row": 10655 + }, + { + "path": "lib/rust/vdj_ann/src/annotate.rs", + "sha256": "b3c9d217f4af6e9881fd31f774febdc79bb0949843d193da0f7ae54948daa878", + "language": "Rust", + "lines": 3641, + "truncated": false, + "block": 1, + "row": 11098 + }, + { + "path": "lib/rust/vdj_ann/src/lib.rs", + "sha256": "4b874f91f38ae23aa51978e78283e55b0d683f0b9e64ce159adad0fe40cee359", + "language": "Rust", + "lines": 11, + "truncated": false, + "block": 1, + "row": 10640 + }, + { + "path": "lib/rust/vdj_ann/src/refx.rs", + "sha256": "ceff16ab4726fda02fd4fd36450a028831b700ce58d560d83abaf14a6b694e0a", + "language": "Rust", + "lines": 281, + "truncated": false, + "block": 1, + "row": 10940 + }, + { + "path": "lib/rust/vdj_ann/src/transcript.rs", + "sha256": "08c3b323e005885dbb085cfb71fd35cd14e1ec0b4df32f10257939b48c8a7a51", + "language": "Rust", + "lines": 356, + "truncated": false, + "block": 1, + "row": 10982 + }, + { + "path": "lib/rust/vdj_ann/src/vdj_features.rs", + "sha256": "b989d166d35fb8f152b50313bcbac0e200fbb621be9a7c41c37ca75a68e73e7c", + "language": "Rust", + "lines": 541, + "truncated": false, + "block": 1, + "row": 11021 + }, + { + "path": "lib/rust/vdj_ann_ref/src/lib.rs", + "sha256": "7f2ae4aeda98a2d26177589d7caeb41bfe75d04fb9610d8ef6bcfc92701f0529", + "language": "Rust", + "lines": 100, + "truncated": false, + "block": 1, + "row": 10797 + }, + { + "path": "lib/rust/vdj_asm_asm/src/adapter.rs", + "sha256": "7ab46b4e0815148eeb1b2a838fb58d3623b8f7f55bcca62a27f088edd965e778", + "language": "Rust", + "lines": 78, + "truncated": false, + "block": 1, + "row": 10764 + }, + { + "path": "lib/rust/vdj_asm_asm/src/airrfilter.rs", + "sha256": "b155ca55f3c2fcded483b8197e6ec6301cff8d710ca01d07bb00c9c547728acc", + "language": "Rust", + "lines": 288, + "truncated": false, + "block": 1, + "row": 10993 + }, + { + "path": "lib/rust/vdj_asm_asm/src/asm_call_cells.rs", + "sha256": "f112d1fb6f770936ce797528e72d4636ceda5da16afe225f2082a3b02520d9d9", + "language": "Rust", + "lines": 215, + "truncated": false, + "block": 1, + "row": 10938 + }, + { + "path": "lib/rust/vdj_asm_asm/src/asm_metrics.rs", + "sha256": "2a8bfe4cbe33f476175418d5a5c781f51c7ac456298c4a26f4950c419620c5cb", + "language": "Rust", + "lines": 96, + "truncated": false, + "block": 1, + "row": 10789 + }, + { + "path": "lib/rust/vdj_asm_asm/src/assembly.rs", + "sha256": "19fab2ba8722c059487be82ea83d2bb0ab37285a99c9a670ffcf77e58d4635d3", + "language": "Rust", + "lines": 1332, + "truncated": false, + "block": 1, + "row": 11085 + }, + { + "path": "lib/rust/vdj_asm_asm/src/assembly_types.rs", + "sha256": "aab7af654c7317dc8e5b530a24c0b321ba46cb1d6c90f8bdcf92066ca19332ce", + "language": "Rust", + "lines": 78, + "truncated": false, + "block": 1, + "row": 10731 + }, + { + "path": "lib/rust/vdj_asm_asm/src/contig_aligner.rs", + "sha256": "2f5e26d71f0b5d371dcbc263882011e0447c919475b7712211b34527e830254b", + "language": "Rust", + "lines": 79, + "truncated": false, + "block": 1, + "row": 10762 + }, + { + "path": "lib/rust/vdj_asm_asm/src/filter_exact_clonotypes.rs", + "sha256": "86cc69050a64fcc7448698674473daa2d6266b7d430a66c08a9b10d719f28729", + "language": "Rust", + "lines": 81, + "truncated": false, + "block": 1, + "row": 10775 + }, + { + "path": "lib/rust/vdj_asm_asm/src/filter_sample_specific.rs", + "sha256": "5c285fc42a5961a80d0e3f8fdf7fc30fd6d0c812cd9d9f83c49da098139cb34a", + "language": "Rust", + "lines": 119, + "truncated": false, + "block": 1, + "row": 10830 + }, + { + "path": "lib/rust/vdj_asm_asm/src/lib.rs", + "sha256": "e71906979405cabf6f927add77bd27ec02cc780edde828f2cea87c4fbee597ac", + "language": "Rust", + "lines": 29, + "truncated": false, + "block": 1, + "row": 10670 + }, + { + "path": "lib/rust/vdj_asm_asm/src/make_exact_clonotypes.rs", + "sha256": "72738a119315f585b4d74bd5ee55e20285528c2e4646f403f78265c8251b79cb", + "language": "Rust", + "lines": 38, + "truncated": false, + "block": 1, + "row": 10691 + }, + { + "path": "lib/rust/vdj_asm_asm/src/make_filter_switch.rs", + "sha256": "001cf2071f73037f428b5a00b850e7dbcff609fc5a4de153543927d27a205caf", + "language": "Rust", + "lines": 65, + "truncated": false, + "block": 1, + "row": 10723 + }, + { + "path": "lib/rust/vdj_asm_asm/src/merge_per_sample_annotations.rs", + "sha256": "097ff8bd7e19cdb69d66cbf72ee23df38cf80bd4baf1d95b8a06dc4977410dcc", + "language": "Rust", + "lines": 169, + "truncated": false, + "block": 1, + "row": 10885 + }, + { + "path": "lib/rust/vdj_asm_asm/src/subset_assembly_outs.rs", + "sha256": "6ae7854d4dc8e709811128861c25ac19657ad68de51690c13e4ba843d802ecf4", + "language": "Rust", + "lines": 195, + "truncated": false, + "block": 1, + "row": 10923 + }, + { + "path": "lib/rust/vdj_asm_asm/src/translator.rs", + "sha256": "b7ba69910cdc7861c3178d8dfa25318e79629a38113853b6d3103c8c81b9a911", + "language": "Rust", + "lines": 271, + "truncated": false, + "block": 1, + "row": 10955 + }, + { + "path": "lib/rust/vdj_asm_asm/src/write_ann_csv.rs", + "sha256": "f7d37df65c2d45b1aa119a610f19d63cea7c827e2e89fe1068c40f40bec60d52", + "language": "Rust", + "lines": 139, + "truncated": false, + "block": 1, + "row": 10852 + }, + { + "path": "lib/rust/vdj_asm_asm/src/write_contig_outs.rs", + "sha256": "332a1001ebeb81351bfb2ec9b830c6006dcc0b3f656c8d838218a597adf564aa", + "language": "Rust", + "lines": 440, + "truncated": false, + "block": 1, + "row": 11030 + }, + { + "path": "lib/rust/vdj_asm_utils/src/asm.rs", + "sha256": "7489d10630fc570faf674f5357a98dde0ba81c2d3ed8f4fe33ce4bf5942c9595", + "language": "Rust", + "lines": 146, + "truncated": false, + "block": 1, + "row": 10792 + }, + { + "path": "lib/rust/vdj_asm_utils/src/bam_utils.rs", + "sha256": "41487d8e7434753144a7e044e369acca75cedc74052e12e439f686e17c997a4b", + "language": "Rust", + "lines": 142, + "truncated": false, + "block": 1, + "row": 10855 + }, + { + "path": "lib/rust/vdj_asm_utils/src/barcode_data.rs", + "sha256": "074eec53b9060d540424cf6804f1d2071c7562249dc2e55aa94d7bee44a90448", + "language": "Rust", + "lines": 941, + "truncated": false, + "block": 1, + "row": 11070 + }, + { + "path": "lib/rust/vdj_asm_utils/src/constants.rs", + "sha256": "4ae0b9603fa5d8f33307f48c187cc10bbaa24aa7b3e3c83bee387e1505fcd03e", + "language": "Rust", + "lines": 37, + "truncated": false, + "block": 1, + "row": 10682 + }, + { + "path": "lib/rust/vdj_asm_utils/src/contigs.rs", + "sha256": "e7fd65e220528293e24cff41ad36b83dd5eafb8c6f464d35e86ebf8a6a073bd6", + "language": "Rust", + "lines": 1575, + "truncated": false, + "block": 1, + "row": 11087 + }, + { + "path": "lib/rust/vdj_asm_utils/src/exact_clonotyping.rs", + "sha256": "d49bfe936b608e31ce12bd4955e49d3b46f8c26b272e6ae52733d986547960ae", + "language": "Rust", + "lines": 147, + "truncated": false, + "block": 1, + "row": 10845 + }, + { + "path": "lib/rust/vdj_asm_utils/src/fastq.rs", + "sha256": "1361e83b6672f41fa423ee45ff2ece0b4f4085afcbbfa82589b8cebc01e0c442", + "language": "Rust", + "lines": 45, + "truncated": false, + "block": 1, + "row": 10687 + }, + { + "path": "lib/rust/vdj_asm_utils/src/graph_read.rs", + "sha256": "4f4e7eef71bc295031bd816c3213a7967eb38158a10a0527395283bf940c8a79", + "language": "Rust", + "lines": 383, + "truncated": false, + "block": 1, + "row": 11006 + }, + { + "path": "lib/rust/vdj_asm_utils/src/heuristics.rs", + "sha256": "7d69fe620aa5a248361fb23d237882aaa55e24cce3a3d372ba58771632b42bf2", + "language": "Rust", + "lines": 22, + "truncated": false, + "block": 1, + "row": 10649 + }, + { + "path": "lib/rust/vdj_asm_utils/src/lib.rs", + "sha256": "d553f0e5dd2cb618a49e22675d7479f6275518a3254bc0ce58d245d542d8e820", + "language": "Rust", + "lines": 31, + "truncated": false, + "block": 1, + "row": 10659 + }, + { + "path": "lib/rust/vdj_asm_utils/src/log_opts.rs", + "sha256": "1d6c7e02cdda5374f6b0c5c5f32493af9058fe8ec68187b6f0120c33c150a475", + "language": "Rust", + "lines": 21, + "truncated": false, + "block": 1, + "row": 10678 + }, + { + "path": "lib/rust/vdj_asm_utils/src/primers.rs", + "sha256": "ca5f8087d7ff6b2b138cde4beb820fcbe6f71fbf8f99d797309f7292e558dd1c", + "language": "Rust", + "lines": 154, + "truncated": false, + "block": 1, + "row": 10868 + }, + { + "path": "lib/rust/vdj_asm_utils/src/process.rs", + "sha256": "d02602b19a02789f2c65d1e00aa53de39ac21d0e69a1d9bca0853d44d0d78cca", + "language": "Rust", + "lines": 1656, + "truncated": false, + "block": 1, + "row": 11089 + }, + { + "path": "lib/rust/vdj_asm_utils/src/ref_free.rs", + "sha256": "aa320977832aa2548bdc3452e4b126b00ec0ad01b542a66f8c63b5968aa4ee04", + "language": "Rust", + "lines": 1215, + "truncated": false, + "block": 1, + "row": 11074 + }, + { + "path": "lib/rust/vdj_asm_utils/src/sw.rs", + "sha256": "46a0973c07a213073f5856be7fcd41b3af0a21db40e5bb9c1b4d3787c9d5c4b6", + "language": "Rust", + "lines": 405, + "truncated": false, + "block": 1, + "row": 11005 + }, + { + "path": "lib/rust/vdj_asm_utils/src/umi_data.rs", + "sha256": "fd445bdb2e63107a5f39e00431f46661fc0ebb61077a1a92dd559ee6319cd3f7", + "language": "Rust", + "lines": 72, + "truncated": false, + "block": 1, + "row": 10722 + }, + { + "path": "lib/rust/vdj_asm_utils/src/utils.rs", + "sha256": "fb35b9904c30ba49bbf5e6e7d05c3dd77871afa2f51968e9c9248a5a3764ec0e", + "language": "Rust", + "lines": 239, + "truncated": false, + "block": 1, + "row": 10887 + }, + { + "path": "lib/rust/vdj_filter_barcodes/src/filter_barcode_level.rs", + "sha256": "32b69c55239f213e420146d60ce178140cfadd38434095abc898205b9063a467", + "language": "Rust", + "lines": 653, + "truncated": false, + "block": 1, + "row": 11044 + }, + { + "path": "lib/rust/vdj_filter_barcodes/src/filter_clonotype_level.rs", + "sha256": "a0b7e1cf4efb584014506da599234074ec519391ef31e309cee58e4e27ff2b95", + "language": "Rust", + "lines": 119, + "truncated": false, + "block": 1, + "row": 10810 + }, + { + "path": "lib/rust/vdj_filter_barcodes/src/filter_library_level.rs", + "sha256": "4a5da6ebd9e33aa9aa20c959a5fe56ff7c0fd82a6f704c949217978c7b23bbc1", + "language": "Rust", + "lines": 781, + "truncated": false, + "block": 1, + "row": 11066 + }, + { + "path": "lib/rust/vdj_filter_barcodes/src/filter_log.rs", + "sha256": "d88fd1e5bbf5a057ef8664d620b9d5d22ecc53daae0616d4ee71188ded3e0a93", + "language": "Rust", + "lines": 350, + "truncated": false, + "block": 1, + "row": 10999 + }, + { + "path": "lib/rust/vdj_filter_barcodes/src/lib.rs", + "sha256": "896420d0628838b173b7bf080458cb1e1486a5aa82c8fdf8da95f7979a92130e", + "language": "Rust", + "lines": 7, + "truncated": false, + "block": 1, + "row": 10631 + }, + { + "path": "lib/rust/vdj_filter_barcodes/src/pack_dna.rs", + "sha256": "fcc923fd3bdd518c047a9e3ea6ba72eb91869370d4a8f50c9e5bf89181d003da", + "language": "Rust", + "lines": 45, + "truncated": false, + "block": 1, + "row": 10680 + }, + { + "path": "lib/rust/vdj_proto/src/adapters.rs", + "sha256": "d64539f19b3ae8419d6c25c124a8c4b4182e808b1e380e5b2dae1c15a0b8bddf", + "language": "Rust", + "lines": 526, + "truncated": false, + "block": 1, + "row": 11031 + }, + { + "path": "lib/rust/vdj_proto/src/io.rs", + "sha256": "af8b707510d3bdc20cc91d95b0687d6d269edc290b9f9f5d3c9897064749681f", + "language": "Rust", + "lines": 419, + "truncated": false, + "block": 1, + "row": 11002 + }, + { + "path": "lib/rust/vdj_proto/src/lib.rs", + "sha256": "e950703ef3a3eb51f0478c71be472898a9f1dead33602432dbd3a5686ab95f59", + "language": "Rust", + "lines": 7, + "truncated": false, + "block": 1, + "row": 10624 + }, + { + "path": "lib/rust/vdj_proto/src/types.rs", + "sha256": "2c9f5bdb9e69caf19c70542a22328905ddf862a1c747f8551ba933642eed706a", + "language": "Rust", + "lines": 403, + "truncated": false, + "block": 1, + "row": 11000 + }, + { + "path": "lib/rust/vdj_reference/src/errors.rs", + "sha256": "4691ec8fa564ef0dec2b49c3cd75c7b670dbb8b98f4a30de412db6473abe0db8", + "language": "Rust", + "lines": 325, + "truncated": false, + "block": 1, + "row": 10961 + }, + { + "path": "lib/rust/vdj_reference/src/lib.rs", + "sha256": "55b08e73bf9843a72c80b8a2ef8542be13b3e4e8b25be41845ad422022a3e61f", + "language": "Rust", + "lines": 868, + "truncated": false, + "block": 1, + "row": 11063 + }, + { + "path": "lib/rust/vdj_reference/src/lookup.rs", + "sha256": "248132950f3d4e810f6153ce7cbaf41fec59c8ccc6a728617ea5ebc96c48eeee", + "language": "Rust", + "lines": 294, + "truncated": false, + "block": 1, + "row": 10977 + }, + { + "path": "lib/rust/vdj_types/src/lib.rs", + "sha256": "84199e5e37b47dbc4f50de6422649ba9965e77289722f08307df1335a5fbc7ee", + "language": "Rust", + "lines": 294, + "truncated": false, + "block": 1, + "row": 10933 + }, + { + "path": "lib/rust/vector_utils/src/lib.rs", + "sha256": "02b52f7ba89334aefc74d11dcb6d3fffd8c7394c7a34a8cb3023431a7744d6fc", + "language": "Rust", + "lines": 338, + "truncated": false, + "block": 1, + "row": 10983 + }, + { + "path": "lib/rust/websummary_build/src/lib.rs", + "sha256": "7724073ac7a6cb87d8b476b7dbc752175f7209ef2a12aacd99caaac5bcc4b263", + "language": "Rust", + "lines": 43, + "truncated": false, + "block": 1, + "row": 10695 + }, + { + "path": "lib/rust/websummary_derive/src/lib.rs", + "sha256": "6c9ee06168fd3f73385197cb6f59558807062b7bab586dcc3bef1ac16c11eb88", + "language": "Rust", + "lines": 72, + "truncated": false, + "block": 1, + "row": 10763 + }, + { + "path": "lib/typescript/websummary/index.ts", + "sha256": "e358a8c1d2a441bfcafe78fd58501ad3d456996943c04127fbc76c368e627547", + "language": "TypeScript", + "lines": 43, + "truncated": false, + "block": 1, + "row": 12086 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/MetricsTable/hooks.ts", + "sha256": "787c8ef8bf581ddca57ba7316d31dbfeb0695b39de2c17a89bac6a23343e6477", + "language": "TypeScript", + "lines": 36, + "truncated": false, + "block": 1, + "row": 12067 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/MetricsTable/utils.test.ts", + "sha256": "38ee3fef21f0405bca33a75daedf35372e31772ca7a61f08d96f9448fea9fa23", + "language": "TypeScript", + "lines": 57, + "truncated": false, + "block": 1, + "row": 12088 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/MetricsTable/utils.ts", + "sha256": "141fc675673e27e69b7e06f89fdee63213cfd47d97ea47b3591ecd17f3634fb4", + "language": "TypeScript", + "lines": 247, + "truncated": false, + "block": 1, + "row": 12151 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/SecitonWithVisualizations/common.ts", + "sha256": "8b4abb0dd39d8eccd4425c117bd017e2c0bfafe1fd8143018a36dc3d1480720b", + "language": "TypeScript", + "lines": 11, + "truncated": false, + "block": 1, + "row": 12022 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/SecitonWithVisualizations/plateUtils.test.ts", + "sha256": "3b2a02fadca99617dcd979dbbc86212d595ccf30580e3f6a855ddefdbd02299d", + "language": "TypeScript", + "lines": 99, + "truncated": false, + "block": 1, + "row": 12113 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/SecitonWithVisualizations/plateUtils.ts", + "sha256": "5919f47b104f7994b731cd3a5984f952caad8a5b240292b6d1ff09adf16c7fb6", + "language": "TypeScript", + "lines": 55, + "truncated": false, + "block": 1, + "row": 12079 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/SecitonWithVisualizations/plotlyUtils.test.ts", + "sha256": "61e46b3e97907f0e0536e6034edacdf14432e0ff2e216fc4a0458074927bf47b", + "language": "TypeScript", + "lines": 192, + "truncated": false, + "block": 1, + "row": 12138 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/SecitonWithVisualizations/plotlyUtils.ts", + "sha256": "3bfc04fd5661b103de31098cdbca7d5952f3fa69a4d133231246ecdc631e52f6", + "language": "TypeScript", + "lines": 138, + "truncated": false, + "block": 1, + "row": 12128 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/SecitonWithVisualizations/useBeeswarmMetricsData.ts", + "sha256": "cba1c82d2721ad3e111de05427921872d8100d95bf3faec27c4664d8add50468", + "language": "TypeScript", + "lines": 213, + "truncated": false, + "block": 1, + "row": 12144 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/SecitonWithVisualizations/usePlateAlerts.ts", + "sha256": "8eaadebe250f0ca410c9ad51ed0666527f009b643555e9a19016abb9963efa9e", + "language": "TypeScript", + "lines": 98, + "truncated": false, + "block": 1, + "row": 12117 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/SecitonWithVisualizations/usePlateMetricsData.ts", + "sha256": "2d8738bcf84dd97185533dde0b3a624bd5ee63f09c544125682f8d70b01fd181", + "language": "TypeScript", + "lines": 264, + "truncated": false, + "block": 1, + "row": 12154 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/SecitonWithVisualizations/utils.test.ts", + "sha256": "da2bfd505887b55873d3f75040fd347e782bddb471a3a9e3e77650fd56741f75", + "language": "TypeScript", + "lines": 57, + "truncated": false, + "block": 1, + "row": 12093 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/SecitonWithVisualizations/utils.ts", + "sha256": "bf1dfc777e80cc94eb92c5a505c7a3625645f344d9ca0db695e9c2378fc5624c", + "language": "TypeScript", + "lines": 73, + "truncated": false, + "block": 1, + "row": 12097 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/alertUtils.test.ts", + "sha256": "9d2b714a7a308ad91972f62f0708eed5ab7382e13b4278efb7ebcb46ae9b6ae0", + "language": "TypeScript", + "lines": 80, + "truncated": false, + "block": 1, + "row": 12111 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/alertUtils.ts", + "sha256": "69b7dd281c560c207540e6c50ce327cc6ba6a73923fd73357fefc8e2e7197464", + "language": "TypeScript", + "lines": 96, + "truncated": false, + "block": 1, + "row": 12109 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/hooks.ts", + "sha256": "2e095c7271ae3f5a2ad2e38b1b630c392a69bece8b01b8274315b308d78bd12b", + "language": "TypeScript", + "lines": 144, + "truncated": false, + "block": 1, + "row": 12127 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/types.ts", + "sha256": "299d47ed52d5fe5b69c76269e3152361f0f5b125f847012e9af57f7021a5de91", + "language": "TypeScript", + "lines": 18, + "truncated": false, + "block": 1, + "row": 12041 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/config/config.test.ts", + "sha256": "8af9d2560a8892797bec6d6eb6b250576f886b823c27a63fcb6d2e4257f6419f", + "language": "TypeScript", + "lines": 51, + "truncated": false, + "block": 1, + "row": 12081 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/config/multiplex-library.ts", + "sha256": "07af56f0245189d99981fc90f365bb43859b73ca7bfd708042f0781d9f3ad198", + "language": "TypeScript", + "lines": 983, + "truncated": false, + "block": 1, + "row": 12193 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/config/multiplex-sample.ts", + "sha256": "3181199c03f6420cb59afffd0d1cf9100f602d16d1f5fa56f7c6dee0d01684bb", + "language": "TypeScript", + "lines": 507, + "truncated": false, + "block": 1, + "row": 12183 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/config/singleplex.ts", + "sha256": "9979a12ad0c79ad71b4ea110ad97cd32fde21c0266d008906a01754c5615c0c2", + "language": "TypeScript", + "lines": 390, + "truncated": false, + "block": 1, + "row": 12168 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/config/types.ts", + "sha256": "0af9e5579f5564d3c284e09bbc2357d7745fa184940e28264293bb19af3439a3", + "language": "TypeScript", + "lines": 23, + "truncated": false, + "block": 1, + "row": 12037 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/consts.ts", + "sha256": "573b0b1238e55bcf37c7d234495a99231ff8b71d09dc91816dc7709e56cb4aa4", + "language": "TypeScript", + "lines": 13, + "truncated": false, + "block": 1, + "row": 12016 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/test-utils.ts", + "sha256": "a25090fc97cc94639a8d8667d69fa7d60a689b83779afb76f7095265cc21e869", + "language": "TypeScript", + "lines": 100, + "truncated": false, + "block": 1, + "row": 12095 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/types.ts", + "sha256": "5712b0959ac6698aec1c8292e108c19a72a173cedb7faf60a2f3440fd403d075", + "language": "TypeScript", + "lines": 222, + "truncated": false, + "block": 1, + "row": 12137 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/utilities.ts", + "sha256": "a313b6408d977e0223ab701a26f6a97a84f825dcc8f97893f0eae16f03cedb37", + "language": "TypeScript", + "lines": 167, + "truncated": false, + "block": 1, + "row": 12131 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/utils.test.ts", + "sha256": "8eab1276a7a989de5ae4b3e73f71cedc4c8869067db17058001c97697bf39e9e", + "language": "TypeScript", + "lines": 53, + "truncated": false, + "block": 1, + "row": 12094 + }, + { + "path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/utils.ts", + "sha256": "8658a5f9a04b5b14b8d264a6b5c6e15b64549bf1fc89fff9783fdafc5a65633e", + "language": "TypeScript", + "lines": 87, + "truncated": false, + "block": 1, + "row": 12099 + }, + { + "path": "lib/typescript/websummary/src/components/index.ts", + "sha256": "41492161be07794a3df8b9e526270916e3f6215d8a5de7f4f99088878bd99381", + "language": "TypeScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 12007 + }, + { + "path": "lib/typescript/websummary/typings/assets.d.ts", + "sha256": "e2b66a06cc215d8f0dcb94d5940f95da40a828e46aa5249ee78e59ad1071727a", + "language": "TypeScript", + "lines": 4, + "truncated": false, + "block": 1, + "row": 12006 + }, + { + "path": "lib/typescript/websummary/webpack.config.js", + "sha256": "84f07eea79feae4381f6b02ac863cb5eb603bef54c2e749a7887baabaa36d2a1", + "language": "JavaScript", + "lines": 130, + "truncated": false, + "block": 1, + "row": 1237 + }, + { + "path": "mro/rna/stages/aggregator/aggregator_preflight/__init__.py", + "sha256": "86b304df21c3a62c002035562bf85d5e8e1c057b0eb73859afc4650a0530a053", + "language": "Python", + "lines": 386, + "truncated": false, + "block": 1, + "row": 9159 + }, + { + "path": "mro/rna/stages/aggregator/build_antigen_aggr_web_summary/__init__.py", + "sha256": "24e6f30aaa077d6a83915be6eed9190508aae9b45ee66b114230181663eae62a", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 1, + "row": 6354 + }, + { + "path": "mro/rna/stages/aggregator/build_combined_web_summary/__init__.py", + "sha256": "d34d8b170650b4bf84f3da9667d6d8c4a9218914dace63c44426994b7dbfade9", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 1, + "row": 6664 + }, + { + "path": "mro/rna/stages/aggregator/check_invariants/__init__.py", + "sha256": "a9314e31f17a4b0f0abe2203d54222e58f86731c87f062f15b7c7545f3f968c4", + "language": "Python", + "lines": 276, + "truncated": false, + "block": 1, + "row": 8588 + }, + { + "path": "mro/rna/stages/aggregator/check_molecule_info_version/__init__.py", + "sha256": "2913c110b142c54081700530ff8b70fa1f2083ddab60bb1e89a50efb99dccc50", + "language": "Python", + "lines": 200, + "truncated": false, + "block": 1, + "row": 8140 + }, + { + "path": "mro/rna/stages/aggregator/crispr_aggr_input_prep/__init__.py", + "sha256": "8f00ab9ea50f68624ada6342b78767a96fa1f181139976b237e7b0122495fef0", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 1, + "row": 5944 + }, + { + "path": "mro/rna/stages/aggregator/normalize_depth/__init__.py", + "sha256": "5a84daee2abb1d96bce59670894eeff7d8e9a8f1b7b0e58bd9ee9c7b83abe6b7", + "language": "Python", + "lines": 773, + "truncated": false, + "block": 1, + "row": 9623 + }, + { + "path": "mro/rna/stages/aggregator/parse_csv/__init__.py", + "sha256": "ff555042dce965d9857189dbd5bb546abea75d4ce618028133a9bd086d9caf03", + "language": "Python", + "lines": 391, + "truncated": false, + "block": 1, + "row": 9010 + }, + { + "path": "mro/rna/stages/aggregator/setup_samples/__init__.py", + "sha256": "6e7d04d02dbf0c85c3e26c56a13847af03116a83e471a61579b5641c3868a89c", + "language": "Python", + "lines": 137, + "truncated": false, + "block": 1, + "row": 7293 + }, + { + "path": "mro/rna/stages/aggregator/summarize_aggregated_reports/__init__.py", + "sha256": "d7264f83a72a75f5371ffcad8346d9e3f8441b88fbcdf2484142969a09787d17", + "language": "Python", + "lines": 179, + "truncated": false, + "block": 1, + "row": 7761 + }, + { + "path": "mro/rna/stages/aggregator/write_matrices/__init__.py", + "sha256": "ed7c7242b8e792d4fcd6bd807399daea945a6543da791b8bfaa688f846df6f88", + "language": "Python", + "lines": 253, + "truncated": false, + "block": 1, + "row": 8334 + }, + { + "path": "mro/rna/stages/analyzer/analyzer_preflight/__init__.py", + "sha256": "5d2e4f592a795da4a7f549ad2db446057391be150939029649bcd9e7285364c2", + "language": "Python", + "lines": 294, + "truncated": false, + "block": 1, + "row": 8770 + }, + { + "path": "mro/rna/stages/analyzer/combine_clustering/__init__.py", + "sha256": "2afc5841fda3d5cb223618858780ab5f2c644769e43c64f3999d1efcde8c3de1", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 1, + "row": 5972 + }, + { + "path": "mro/rna/stages/analyzer/correct_chemistry_batch/__init__.py", + "sha256": "7767c76deeea5f4efe332fa6904242003a43663c210f9945ca661227239b2ee6", + "language": "Python", + "lines": 384, + "truncated": false, + "block": 1, + "row": 8995 + }, + { + "path": "mro/rna/stages/analyzer/parse_csv/__init__.py", + "sha256": "e670334d75751cd6ae5dd6834153fe71f32dd90d87bacab3c6f329b6907ba247", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 1, + "row": 7063 + }, + { + "path": "mro/rna/stages/analyzer/pca_prep/__init__.py", + "sha256": "b6e2969c026683e341ab183758273c3ae4b84ec16bf5687e6bc019364f008c5e", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 1, + "row": 6137 + }, + { + "path": "mro/rna/stages/analyzer/post_pca/__init__.py", + "sha256": "c635e896da2365d0783d441be4e2d05625b8ea734ac82b3055023b564881a092", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 1, + "row": 6305 + }, + { + "path": "mro/rna/stages/analyzer/preprocess_matrix/__init__.py", + "sha256": "0f3fbaee51b628e0411fc3e6c70a6f220b16f0e798632eec4e9047b54daabe0f", + "language": "Python", + "lines": 279, + "truncated": false, + "block": 1, + "row": 8516 + }, + { + "path": "mro/rna/stages/analyzer/reanalyze_verify_sample_ids/__init__.py", + "sha256": "5323dcd526e990701b03f5304ed5b5219fa011fb4a189c74d726de9bb6fe05d1", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 1, + "row": 6061 + }, + { + "path": "mro/rna/stages/analyzer/reanalyzer_preflight/__init__.py", + "sha256": "637212ec18ea115c9f5c3292deb85c1fd073aadae6265b521f9c9f7df56fbb8a", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 1, + "row": 6242 + }, + { + "path": "mro/rna/stages/analyzer/run_kmeans/__init__.py", + "sha256": "331d8087c3ec615e17367b72bfc0ebdfe0a118acde2f57243086f187a24a2973", + "language": "Python", + "lines": 125, + "truncated": false, + "block": 1, + "row": 7110 + }, + { + "path": "mro/rna/stages/analyzer/run_multigenome_analysis/__init__.py", + "sha256": "e87e3ec5f2be3751f74febe01a48b9f8dc1ae5a16cc256182788cf1213227092", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 1, + "row": 6053 + }, + { + "path": "mro/rna/stages/analyzer/run_pca/__init__.py", + "sha256": "b35b00777a7f3ef50ce6716a31890ef052b2d4e9a76b6ea2261f5e040f5810b2", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 1, + "row": 6694 + }, + { + "path": "mro/rna/stages/analyzer/summarize_analysis/__init__.py", + "sha256": "f700e4c1d36b80203a7f11162bb6fce3ebbfc49037559521fd26dcda59f8294f", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 1, + "row": 6931 + }, + { + "path": "mro/rna/stages/analyzer/summarize_reanalysis/__init__.py", + "sha256": "824a58a11c37b34e578982e9358928be6da3635366a7d9f2f3384d91ecbd7b17", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 1, + "row": 7019 + }, + { + "path": "mro/rna/stages/cas_cell_typing/aggregate_cell_type_csv/__init__.py", + "sha256": "7f34b336c635ad784d62218a971d4acaf713d3ef916ca9f26d73eb90983da89f", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 1, + "row": 6756 + }, + { + "path": "mro/rna/stages/cas_cell_typing/aggregate_cell_type_json/__init__.py", + "sha256": "6922cd4c331a9959d252b401d47e88d63110510b9fa7b21f0c933262e7389213", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 1, + "row": 7563 + }, + { + "path": "mro/rna/stages/cas_cell_typing/analyze_cell_types/__init__.py", + "sha256": "4ba3c10d47a8bfad4bdc703355e8a29b7538c1b60008b2673f36df0056816173", + "language": "Python", + "lines": 128, + "truncated": false, + "block": 1, + "row": 7364 + }, + { + "path": "mro/rna/stages/cas_cell_typing/append_cell_types_cloupe/__init__.py", + "sha256": "7253b4e4ce4b037d0bdb7733e56380ec4ecf49a27b4083120cbce6b26d84525a", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 1, + "row": 7288 + }, + { + "path": "mro/rna/stages/cas_cell_typing/call_azimuth_cell_types/__init__.py", + "sha256": "80d42571dd728e6ae39e6da8ec79644e985430eeef77f58c9c8c0fcd3a1b592e", + "language": "Python", + "lines": 215, + "truncated": false, + "block": 1, + "row": 8063 + }, + { + "path": "mro/rna/stages/cas_cell_typing/call_cloud_cell_types/__init__.py", + "sha256": "11c93c1be6af2af354d44a0d3e8981c92614d178b63bfbdea236a4b7a80f862d", + "language": "Python", + "lines": 464, + "truncated": false, + "block": 1, + "row": 9216 + }, + { + "path": "mro/rna/stages/cas_cell_typing/cell_annotation_preflight/__init__.py", + "sha256": "7072fd76ccf19b35b08ed26048b8ad75f9cf3f657a90edad7b32d2e3c2e7fc56", + "language": "Python", + "lines": 235, + "truncated": false, + "block": 1, + "row": 8635 + }, + { + "path": "mro/rna/stages/cas_cell_typing/cell_typing_demultiplexer/__init__.py", + "sha256": "d67973857de32cf35a8e4f4116b61f3abf34ab00099fc1963827e5479751c559", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 1, + "row": 5453 + }, + { + "path": "mro/rna/stages/cas_cell_typing/cell_typing_multiplexer/__init__.py", + "sha256": "ff28960d96c1835cbc107e12494f5c2c4a3b6ccdcea3d61401853323e724440c", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 1, + "row": 7032 + }, + { + "path": "mro/rna/stages/cas_cell_typing/check_cloupe_matrix_consistent/__init__.py", + "sha256": "0df2a851a6dab372024ced23273af910ee6f24bd4f65641cb17b6ceea91efd68", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 1, + "row": 6369 + }, + { + "path": "mro/rna/stages/cas_cell_typing/cloud_cell_annotation_viable_but_not_requested/__init__.py", + "sha256": "b65bbe80c9ba5627b05b473c8902e744d879bfc8ea2760df09bd031e7c0f613c", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 1, + "row": 6210 + }, + { + "path": "mro/rna/stages/cas_cell_typing/create_meta_cells/__init__.py", + "sha256": "ddef7452715ea70c768f1428abe8042d4e0a3c4a0cbc3c384d2c28a69123a4b6", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 1, + "row": 6602 + }, + { + "path": "mro/rna/stages/cas_cell_typing/demux_cloupe_track_name/__init__.py", + "sha256": "f52f3a01b6cf324dbb2d366f41a87e6b8239c53b64d9ca633ad38b06d1562039", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 1, + "row": 5401 + }, + { + "path": "mro/rna/stages/cas_cell_typing/disable_cas_reporter_stages/__init__.py", + "sha256": "e716af4ff1a9bf4d1fb45a7cdbc68b50da785e2fbef0d128a6dc3ca230eb6bfd", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 5734 + }, + { + "path": "mro/rna/stages/cas_cell_typing/extract_loupe_projection/__init__.py", + "sha256": "bf6c8915f4737f8a9f2a46ca3c1e112cc101f45ea9b8d8e1e1166d90fddcdc44", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 1, + "row": 5869 + }, + { + "path": "mro/rna/stages/cas_cell_typing/get_cell_types_barchart/__init__.py", + "sha256": "7fb9b04d7fdb16675a75b72b1ef5af151aa8f7aebb6e59db521d85d24d95a7b6", + "language": "Python", + "lines": 311, + "truncated": false, + "block": 1, + "row": 8514 + }, + { + "path": "mro/rna/stages/cas_cell_typing/get_cell_types_box_plot/__init__.py", + "sha256": "0f311055d42f948e8c48e906e930a1b28daa3a2780fb0a7089bf658d47fce979", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 1, + "row": 6065 + }, + { + "path": "mro/rna/stages/cas_cell_typing/get_cell_types_umap_plot/__init__.py", + "sha256": "ada3614ad45982f18a7730822ccf8813979a4393ec2543c0b4cb4f1916306494", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 1, + "row": 5923 + }, + { + "path": "mro/rna/stages/cas_cell_typing/get_cloupe_cell_types/__init__.py", + "sha256": "68512f53a73a2c3eabee88ca5a770eecf87309de68aaffa43502f0631a943cd1", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 1, + "row": 5594 + }, + { + "path": "mro/rna/stages/cas_cell_typing/merge_all_cell_type_metrics/__init__.py", + "sha256": "6741bb9eae66387678a2ef50f13b0874cff6907ebd305d139e61d4ee3faabde1", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 1, + "row": 5756 + }, + { + "path": "mro/rna/stages/cas_cell_typing/remove_meta_cells_from_cell_types/__init__.py", + "sha256": "3f7193818b47490f6262e78d87be354b058f8865c9bd24bce56e514dfc264438", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 1, + "row": 6237 + }, + { + "path": "mro/rna/stages/cas_cell_typing/replace_low_umi_cells/__init__.py", + "sha256": "ff187fe91d61dee211029ff6b1c8f151391775f4910ac21cf78dd4b01ea9b16f", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 1, + "row": 6452 + }, + { + "path": "mro/rna/stages/cas_cell_typing/structify_aggregated_celltypes/__init__.py", + "sha256": "919e52f162396898d98a768ad4cc6b6c303331b8f2b0a24dfecadf2a48a02110", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 1, + "row": 5895 + }, + { + "path": "mro/rna/stages/cas_cell_typing/structify_cell_annotation_outs/__init__.py", + "sha256": "992bbc4ecf895cadacb220fcadca12de1c94a78e45f9272d39330ea8980416f7", + "language": "Python", + "lines": 186, + "truncated": false, + "block": 1, + "row": 8108 + }, + { + "path": "mro/rna/stages/cas_cell_typing/structify_websummary_inputs/__init__.py", + "sha256": "dfbc2abedc0d30e2823e2666142b5dccb50ff170b80df23fd9cfd2de1b5f5f1d", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 5899 + }, + { + "path": "mro/rna/stages/cas_cell_typing/tidy_celltype_diffexp/__init__.py", + "sha256": "30678478d62ff004cbea54da957a5ce189db394b7b957bd2b283a7f01d896484", + "language": "Python", + "lines": 112, + "truncated": false, + "block": 1, + "row": 7048 + }, + { + "path": "mro/rna/stages/cas_cell_typing/validate_segmentation_directory/__init__.py", + "sha256": "74016f02bfaf73686ab9369c718cf41e294b5b9e8d07a484de49c98d8137030c", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 1, + "row": 6120 + }, + { + "path": "mro/rna/stages/cas_cell_typing/write_cell_types_h5/__init__.py", + "sha256": "d9adb8343954b2e596c9ca5edf6a01bfbb59e53dbd5b246b40f30cc62e960b76", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 1, + "row": 6223 + }, + { + "path": "mro/rna/stages/cloupe/cloupe_preprocess/__init__.py", + "sha256": "4f06148d2943fb8e995e26e079e018a4325af5186be885f2c6aec99311d5794e", + "language": "Python", + "lines": 260, + "truncated": false, + "block": 1, + "row": 8417 + }, + { + "path": "mro/rna/stages/common/cellranger_preflight/__init__.py", + "sha256": "4146d835eb754cfc0d8e32be211896ebd0fd12bfa052347e4d88228243eb759d", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 1, + "row": 6779 + }, + { + "path": "mro/rna/stages/common/disable_feature_stages/__init__.py", + "sha256": "de0ed4411999191c3b1a8451ef017640d553d7047b21a970f77d730841c35847", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 1, + "row": 7528 + }, + { + "path": "mro/rna/stages/common/disable_secondary_analysis/__init__.py", + "sha256": "c5fc41b3f2272fec5334b34cd31055a6001ca8d680e7e1dfc480a9d7b40a7aa1", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 1, + "row": 6707 + }, + { + "path": "mro/rna/stages/common/make_vdj_config/__init__.py", + "sha256": "a84970bfcf1b65ff24abdf5e1de9bdcdb9675b72739b4bbc3cfbedb5c0cf4606", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 1, + "row": 6311 + }, + { + "path": "mro/rna/stages/common/parse_target_features/__init__.py", + "sha256": "f8e0e3abed98ab90088ce615fc58d51d5b99f168ba0c28f30a77a71f016f5577", + "language": "Python", + "lines": 158, + "truncated": false, + "block": 1, + "row": 7620 + }, + { + "path": "mro/rna/stages/counter/filter_barcodes/__init__.py", + "sha256": "8f507fb3263b89fd3811990fa8efd11d331d0c526efd46161160dfcd221159a0", + "language": "Python", + "lines": 863, + "truncated": false, + "block": 1, + "row": 9661 + }, + { + "path": "mro/rna/stages/counter/get_aggregate_barcodes_out/__init__.py", + "sha256": "696e8ed174cde7b718b7fe51f4fab86b57924363657dfe54a4441b5e19789700", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 1, + "row": 6339 + }, + { + "path": "mro/rna/stages/counter/subsample_reads/__init__.py", + "sha256": "f9667407f26f9cd1215204abda5b02c5ddadb6818a0ba9791e8ddcf89d8e9ea5", + "language": "Python", + "lines": 159, + "truncated": false, + "block": 1, + "row": 7502 + }, + { + "path": "mro/rna/stages/counter/summarize_basic_reports/__init__.py", + "sha256": "dca64e54c4ca2319a2faf854581ae8fde8d4a87bf91b1c3557f256877a822471", + "language": "Python", + "lines": 139, + "truncated": false, + "block": 1, + "row": 7467 + }, + { + "path": "mro/rna/stages/counter/summarize_reports/__init__.py", + "sha256": "13a35a1f4cf74a4c0bec6264f1beb605d0dd334b9f3cc53675301c469bbc8d78", + "language": "Python", + "lines": 190, + "truncated": false, + "block": 1, + "row": 7923 + }, + { + "path": "mro/rna/stages/feature/antigen_specificity/__init__.py", + "sha256": "89b4dfe393f5c5d61b026931d886f4be2d7e8622d315b7a3c2a4fa385b9ab914", + "language": "Python", + "lines": 216, + "truncated": false, + "block": 1, + "row": 8206 + }, + { + "path": "mro/rna/stages/feature/call_antibodies/__init__.py", + "sha256": "e382390f948cf44f8947b068b8f5f8805151cfa36f7d383b051234c96b032509", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 1, + "row": 7835 + }, + { + "path": "mro/rna/stages/feature/call_protospacers/__init__.py", + "sha256": "28650f1d78e2c66b49f7dfdeb5a1d3dd510d65141222a3d2a40ad00d39e4f82a", + "language": "Python", + "lines": 279, + "truncated": false, + "block": 1, + "row": 8636 + }, + { + "path": "mro/rna/stages/feature/call_tags_jibes/__init__.py", + "sha256": "8056722eb046dd8e777209dbf0595bcd2444179b4081ce691fa583e7df53a45b", + "language": "Python", + "lines": 322, + "truncated": false, + "block": 1, + "row": 8750 + }, + { + "path": "mro/rna/stages/feature/call_tags_marginal/__init__.py", + "sha256": "66b6a0e1e967299ff6baca98ee72affb351c6b50adaa851dc9bdd28e3eae18f3", + "language": "Python", + "lines": 178, + "truncated": false, + "block": 1, + "row": 7687 + }, + { + "path": "mro/rna/stages/feature/compute_presplit_assignment/__init__.py", + "sha256": "8d9814bcf2787f28f7660a579750db0afcb02c79ca164938d4d45cd911a64fac", + "language": "Python", + "lines": 217, + "truncated": false, + "block": 1, + "row": 8375 + }, + { + "path": "mro/rna/stages/feature/infer_gem_well_throughput/__init__.py", + "sha256": "23cca54e7c1f8e66b883932ced5435d3f1949f968c3755d3882f357cdf7ceedf", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 1, + "row": 7519 + }, + { + "path": "mro/rna/stages/feature/measure_perturbations/__init__.py", + "sha256": "947898d69f78bb2b9064db645eadb4a46bd3af02c3a71e406097e46617747c0c", + "language": "Python", + "lines": 253, + "truncated": false, + "block": 1, + "row": 8435 + }, + { + "path": "mro/rna/stages/feature/summarize_antibody_analysis/__init__.py", + "sha256": "d7ef976a72419d0778101dc6e250ea7c4aea770c20cd62a0d49e25f526fbfdc5", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 1, + "row": 6004 + }, + { + "path": "mro/rna/stages/feature/summarize_crispr_analysis/__init__.py", + "sha256": "07b105b7246f8ec955134e551effb64d2facc3cf2127356db93ecd01ee9e7d23", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 1, + "row": 7052 + }, + { + "path": "mro/rna/stages/make_reference/__init__.py", + "sha256": "b5505114bcd5f90030546f97b9229c688f6eddc0a3fb53bbdf43e91d59e9e291", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 1, + "row": 6081 + }, + { + "path": "mro/rna/stages/make_vdj_reference/__init__.py", + "sha256": "b009d6cc14ccca7b0608b43ebfcc700aff091288a7d7a44c46abf7629f175fbd", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 1, + "row": 6310 + }, + { + "path": "mro/rna/stages/multi/build_sample_outs/__init__.py", + "sha256": "58caa1333213a842b7fb8be31a8534b6514ae668968e794c7d7e1bb84913355f", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 1, + "row": 6453 + }, + { + "path": "mro/rna/stages/multi/choose_cloupe/__init__.py", + "sha256": "df78866185c7d876153a8a1d4c185f9c17744ea855cc6a9530797fef2ce6184c", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 1, + "row": 6219 + }, + { + "path": "mro/rna/stages/multi/compute_extra_multiplexing_metrics/__init__.py", + "sha256": "eb01f3d909772f2b2794b5e5b48ec841f98f87bf9bfe942c31b395661e23acbc", + "language": "Python", + "lines": 206, + "truncated": false, + "block": 1, + "row": 7967 + }, + { + "path": "mro/rna/stages/multi/determine_sample_assignments/__init__.py", + "sha256": "05594d550677d9c449702ec6ae4e225d53305826eb2868b4a10b12df2f0db780", + "language": "Python", + "lines": 534, + "truncated": false, + "block": 1, + "row": 9298 + }, + { + "path": "mro/rna/stages/multi/disable_multi_core_stages/__init__.py", + "sha256": "bddcb38817e3b984158ca13ec9fb6ad0361de08516bdf02c91a9b135642ce458", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 1, + "row": 6445 + }, + { + "path": "mro/rna/stages/multi/disable_stages/__init__.py", + "sha256": "d8dfbf3b07210fdb98316d88211347e34bd41a98e3e73565cc8550e9de7bc9fc", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 1, + "row": 6408 + }, + { + "path": "mro/rna/stages/multi/generate_library_plots/__init__.py", + "sha256": "c127a31f67f9cc38e3fa31195312a23ffb7c959069857b1e6ce5500efa22ede6", + "language": "Python", + "lines": 246, + "truncated": false, + "block": 1, + "row": 8327 + }, + { + "path": "mro/rna/stages/multi/generate_sample_plots/__init__.py", + "sha256": "a775f326ebc16216726b7af29badca3df1c92888ed61350951cdd7ea7e34c164", + "language": "Python", + "lines": 201, + "truncated": false, + "block": 1, + "row": 7997 + }, + { + "path": "mro/rna/stages/multi/multi_write_per_sample_matrices/__init__.py", + "sha256": "12d3b7dd3cb3ae13c839a35df588b3758a107a2ec6f1951d679f9b6e93d0b895", + "language": "Python", + "lines": 286, + "truncated": false, + "block": 1, + "row": 8364 + }, + { + "path": "mro/rna/stages/multi/multiplexing_method/__init__.py", + "sha256": "8d8c610c4e7b548c49a723a5d35e64914cd2094cd8dcc199b0c87ccb1fdca5f2", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 1, + "row": 6907 + }, + { + "path": "mro/rna/stages/multi/sanitize_map_calls/__init__.py", + "sha256": "dce967a0cf7c3d2b73f9dbda4ba39b3e6de151cf98c865d8f5fd2f8cbedadb62", + "language": "Python", + "lines": 204, + "truncated": false, + "block": 1, + "row": 8126 + }, + { + "path": "mro/rna/stages/multi/structify_per_sample_outs/__init__.py", + "sha256": "055460e65efebbe679918816234339d6b660412ca749a5e8e22036bd26191400", + "language": "Python", + "lines": 272, + "truncated": false, + "block": 1, + "row": 8371 + }, + { + "path": "mro/rna/stages/spatial/create_hd_websummary_image/__init__.py", + "sha256": "0ec488be87b0b4c6b7bfea2fa6c60e3ae266980c8117f4929a6cf9aa678586a2", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 1, + "row": 6313 + }, + { + "path": "mro/rna/stages/spatial/segmentation_spatial_plots/__init__.py", + "sha256": "77bfe9bc63370de85143c7bb17ff232b6fd17964cdef5ee2fc3e104b1a9d29f4", + "language": "Python", + "lines": 347, + "truncated": false, + "block": 1, + "row": 8818 + }, + { + "path": "mro/rna/stages/targeted/calculate_targeted_metrics/__init__.py", + "sha256": "045288d87cabf3c2d225ef4cc0e1c7edf6589dc2c71b0f8d3c3aac9958cdf283", + "language": "Python", + "lines": 447, + "truncated": false, + "block": 1, + "row": 9303 + }, + { + "path": "mro/rna/stages/targeted/disable_targeted_stages/__init__.py", + "sha256": "3322fd1e36828a90536f32122e4e59edebd5bc58f61e79f29930891112c8c084", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 1, + "row": 6429 + }, + { + "path": "mro/rna/stages/targeted/get_gdna_plot/__init__.py", + "sha256": "493b6c3a1e493554cd2db12d41b9fe5887c0f3d719dddd98d54a97089252f655", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 1, + "row": 6487 + }, + { + "path": "mro/rna/stages/vdj/build_aggr_web_summary/__init__.py", + "sha256": "2b5fa8df99e58939168e28b1b58647d55579110c5a574476d2e5bc20f26531af", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 1, + "row": 6029 + }, + { + "path": "mro/rna/stages/vdj/clonotype_diversity/__init__.py", + "sha256": "9e4ffc6ff327e24118ce7f98181855b70b72c02304dd5c511a007fb8c6092d64", + "language": "Python", + "lines": 460, + "truncated": false, + "block": 1, + "row": 9068 + }, + { + "path": "mro/rna/stages/vdj/pick_vdj_outs/__init__.py", + "sha256": "b07e55e9dcf747770f802ce6d9d759e760ce9cee9dc6c40703a3e620e029ec58", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 1, + "row": 6228 + }, + { + "path": "mro/rna/stages/vdj/report_contigs/__init__.py", + "sha256": "387ba0538a20028368a00e5a68bf96b9ea8c4b07f11c75853c3f4c0b57768aab", + "language": "Python", + "lines": 192, + "truncated": false, + "block": 1, + "row": 7744 + }, + { + "path": "mro/rna/stages/vdj/split_vdj_inputs/__init__.py", + "sha256": "1284e1af750361b7c0f69b41a347ddddb6ef83625f33e9d38999b2fafe231530", + "language": "Python", + "lines": 128, + "truncated": false, + "block": 1, + "row": 7501 + }, + { + "path": "mro/rna/stages/vdj/summarize_reports/__init__.py", + "sha256": "20ed9202f4e61374aa994bd3ed0f076bebaff53f6392ede570a8531af294d3ec", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 1, + "row": 6894 + }, + { + "path": "mro/rna/stages/vdj/vdj_preflight/__init__.py", + "sha256": "5e79a750ab84ef69e789008e335ee2da1c12f1550c986b2b3c556101808ed2f7", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 1, + "row": 6563 + }, + { + "path": "mro/rna/stages/vloupe/vloupe_preprocess/__init__.py", + "sha256": "9eea44308a7871983bb0f5927ad72168be06d15294f5762cccc8127312b2076e", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 1, + "row": 7010 + }, + { + "path": "mro/tenkit/stages/make_fastqs/bcl2fastq_with_samplesheet/__init__.py", + "sha256": "467a338c242658840d3af03d6832303364ffdf440023a0a8942296e52fc6de54", + "language": "Python", + "lines": 207, + "truncated": false, + "block": 1, + "row": 7965 + }, + { + "path": "mro/tenkit/stages/make_fastqs/make_fastqs_preflight/__init__.py", + "sha256": "21c87ba308f98225ef6b48d03773cf7f6fdb4d24ad4cf8b6502447828fb9e8fa", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 1, + "row": 6188 + }, + { + "path": "mro/tenkit/stages/make_fastqs/make_fastqs_preflight_local/__init__.py", + "sha256": "c5e70ab0cd583dfefe020d45a7abaafab451327c2109422eef7787b5490f3500", + "language": "Python", + "lines": 172, + "truncated": false, + "block": 1, + "row": 7671 + }, + { + "path": "mro/tenkit/stages/make_fastqs/merge_fastqs_by_lane_sample/__init__.py", + "sha256": "5cc501341b3248d8eb3834bf932aa82b05f28c75b768c016fb2a9dcdf71f3667", + "language": "Python", + "lines": 303, + "truncated": false, + "block": 1, + "row": 8813 + }, + { + "path": "mro/tenkit/stages/make_fastqs/prepare_samplesheet/__init__.py", + "sha256": "5ca8cdb352f35ec30dab3af4698e362d304996e3b847565d976d233b1f22b490", + "language": "Python", + "lines": 223, + "truncated": false, + "block": 1, + "row": 8348 + }, + { + "path": "third-party/build_opencv.sh", + "sha256": "f20c0d1ba3328eff726aa7f5c0e757cbec1a9b2ba8d2d6dcb0871ce3f92ebf31", + "language": "Shell", + "lines": 262, + "truncated": false, + "block": 1, + "row": 11742 + } + ] +} \ No newline at end of file diff --git a/manifests/19/github.com__asromer-biology__romer_et_al_2026_python_prioritization.json b/manifests/19/github.com__asromer-biology__romer_et_al_2026_python_prioritization.json new file mode 100644 index 0000000000000000000000000000000000000000..85e859b38cb99bffade36ca555d11d5b50ea2433 --- /dev/null +++ b/manifests/19/github.com__asromer-biology__romer_et_al_2026_python_prioritization.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/asromer-biology/romer_et_al_2026_python_prioritization", + "url": "https://github.com/Asromer-biology/Romer_et_al_2026_python_prioritization/tree/v1.0.2", + "host": "github.com", + "commit": "30ef1744d5d9c34d433309625aa624f48aa1fdb1", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "2a7a20165cac3224baa031a0c7735098430ed24ac707560e6b99b37e11c3d476", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2155 + }, + { + "path": "R/01_PEP_Demo.R", + "sha256": "eff9bf1fbfbb19517bcc3c1968dac851b03fabd8f7b62d7a54238b1bd49e5e7e", + "language": "R", + "lines": 1794, + "truncated": false, + "block": 1, + "row": 10613 + }, + { + "path": "R/02_PEP_Demo_MachineLearning.R", + "sha256": "4e31077525a97d6964a8c5a13803adb2b1b04c5c97b7ab20d86ab2b5e990ad6d", + "language": "R", + "lines": 997, + "truncated": false, + "block": 1, + "row": 10600 + }, + { + "path": "R/compute_wri.R", + "sha256": "466932278d83d7579f5ee3882dc2b28a8f0f95a200c66c11d1414682824fbf45", + "language": "R", + "lines": 207, + "truncated": false, + "block": 1, + "row": 10381 + }, + { + "path": "README.md", + "sha256": "d0bfabf393abcd480794b62b8f99d086d962cda25fb8250269a63c8dbcc61513", + "language": "Text", + "lines": 116, + "truncated": false, + "block": 1, + "row": 11962 + } + ] +} \ No newline at end of file diff --git a/manifests/1a/zenodo__14770236.json b/manifests/1a/zenodo__14770236.json new file mode 100644 index 0000000000000000000000000000000000000000..3ec224eda53e4d9d326788f440dfb41ecee1cb11 --- /dev/null +++ b/manifests/1a/zenodo__14770236.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:14770236", + "url": "10.5281/zenodo.14770236", + "host": "zenodo.org", + "commit": "", + "license": "CC0-1.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "a2010f343487d3f7618affe54f789f5487602331c0a8d03f49e9a7c547cf0499", + "language": "License", + "lines": 121, + "truncated": false, + "block": 1, + "row": 2210 + }, + { + "path": "README.md", + "sha256": "eefcfeac2c0a53e6c0d512fc1d8ba30dbd9b9a04583c23c8fe4960852d8b6fb4", + "language": "Text", + "lines": 2, + "truncated": false, + "block": 2, + "row": 2581 + } + ] +} \ No newline at end of file diff --git a/manifests/1b/github.com__jorvalgl__thresholderer.json b/manifests/1b/github.com__jorvalgl__thresholderer.json new file mode 100644 index 0000000000000000000000000000000000000000..c94cf724e328a1eb0a61d9196907e0e36ae6b033 --- /dev/null +++ b/manifests/1b/github.com__jorvalgl__thresholderer.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/jorvalgl/thresholderer", + "url": "https://github.com/Jorvalgl/Thresholderer", + "host": "github.com", + "commit": "4239f9f83044dc1cb46a7fb5daa1ef9bb11a5bf4", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "8f7769c41361f5dfb300882af678156fe764b587678eb19e969ccdb8c063422e", + "language": "Text", + "lines": 51, + "truncated": false, + "block": 1, + "row": 11847 + } + ] +} \ No newline at end of file diff --git a/manifests/1b/github.com__mica-mni__micaflow.json b/manifests/1b/github.com__mica-mni__micaflow.json new file mode 100644 index 0000000000000000000000000000000000000000..2e1dc6021215bf7e95656081ebac4e3867fc9f50 --- /dev/null +++ b/manifests/1b/github.com__mica-mni__micaflow.json @@ -0,0 +1,408 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/mica-mni/micaflow", + "url": "https://github.com/MICA-MNI/MICAFlow", + "host": "github.com", + "commit": "51d2f73d2009809234b5ac9f5209be37a96b3cc2", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "6766e225922f4d2e5701da945642378ccec559588109de2fdf0ffc1374bb4dda", + "language": "License", + "lines": 105, + "truncated": false, + "block": 1, + "row": 2208 + }, + { + "path": "README.md", + "sha256": "8788f5562779478188758e6b671aa22095d95b6c44154332446790045a79c9e2", + "language": "Text", + "lines": 235, + "truncated": false, + "block": 1, + "row": 11966 + }, + { + "path": "docs/add_docstrings.py", + "sha256": "0d2e37b5631d2629f4760e08efa2467808e1ccf79fb6529c9d0cf381300861d0", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 1, + "row": 6467 + }, + { + "path": "docs/build/html/_static/_sphinx_javascript_frameworks_compat.js", + "sha256": "480a2c7377252c14a11bca4d3a49dfa16ea540a998fa637fae0189aee1b89113", + "language": "JavaScript", + "lines": 123, + "truncated": false, + "block": 1, + "row": 1255 + }, + { + "path": "docs/build/html/_static/clipboard.min.js", + "sha256": "261ffa06f381039cf7d18984d1364c59f3c2b9b60b1fa05d5f9c8c152e4d5be5", + "language": "JavaScript", + "lines": 7, + "truncated": false, + "block": 1, + "row": 1417 + }, + { + "path": "docs/build/html/_static/copybutton.js", + "sha256": "89ee4163ba2fdd47404883ebc81bf93f696f6ab02aa5795331a8ff7161e9e256", + "language": "JavaScript", + "lines": 248, + "truncated": false, + "block": 1, + "row": 1400 + }, + { + "path": "docs/build/html/_static/copybutton_funcs.js", + "sha256": "4a178ecff5d986b5612029299ac6f4d08c401fe162af30176b501d318b25b753", + "language": "JavaScript", + "lines": 73, + "truncated": false, + "block": 1, + "row": 1148 + }, + { + "path": "docs/build/html/_static/doctools.js", + "sha256": "2992c09df91826a8d33e3b48b645ee77e457adcf7c712d776a814e1e2c448b43", + "language": "JavaScript", + "lines": 149, + "truncated": false, + "block": 1, + "row": 1257 + }, + { + "path": "docs/build/html/_static/documentation_options.js", + "sha256": "de67807817d57570f5b4a39e165f724903240d430e1bd8c52598f433dff81566", + "language": "JavaScript", + "lines": 13, + "truncated": false, + "block": 1, + "row": 622 + }, + { + "path": "docs/build/html/_static/jquery.js", + "sha256": "ff1523fb7389539c84c65aba19260648793bb4f5e29329d2ee8804bc37a3fe6e", + "language": "JavaScript", + "lines": 2, + "truncated": false, + "block": 1, + "row": 1544 + }, + { + "path": "docs/build/html/_static/js/badge_only.js", + "sha256": "f0a4808d04c4d55378751ac096a8376b64b1a704c82584b0ee590212cf413013", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 838 + }, + { + "path": "docs/build/html/_static/js/theme.js", + "sha256": "536ad2d746e944c5570cc15badaeccc3c0582a1b66e45511fe4edce32b6da510", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 1296 + }, + { + "path": "docs/build/html/_static/js/versions.js", + "sha256": "0998cc5239113cb6009ab1730e24ede85673759810ee8fb1e2f912305282a4aa", + "language": "JavaScript", + "lines": 228, + "truncated": false, + "block": 1, + "row": 1365 + }, + { + "path": "docs/build/html/_static/language_data.js", + "sha256": "3bc311563b7fc5e80fcab2f8629774bf3cb6b30202000df36dff8e695a9023b7", + "language": "JavaScript", + "lines": 192, + "truncated": false, + "block": 1, + "row": 1278 + }, + { + "path": "docs/build/html/_static/searchtools.js", + "sha256": "2a6b65cf29a1832713d508c471d64325312bb9b5672b81ed5595fa68333a65b5", + "language": "JavaScript", + "lines": 632, + "truncated": false, + "block": 1, + "row": 1492 + }, + { + "path": "docs/build/html/_static/sphinx_highlight.js", + "sha256": "096231e9c87df80ec3273da9c5b71bc81503206726a07a4dd4de44c256ff859c", + "language": "JavaScript", + "lines": 154, + "truncated": false, + "block": 1, + "row": 1300 + }, + { + "path": "docs/build/html/_static/tabs.js", + "sha256": "c3584d8812b48bb670cd038403f957d6f0afd864ebeb03514ee1df9ef34391b6", + "language": "JavaScript", + "lines": 145, + "truncated": false, + "block": 1, + "row": 1252 + }, + { + "path": "docs/build/html/searchindex.js", + "sha256": "045b308f8a03e821b3af64d6eb661f042ffa7d049f85de7da8cc28e900e0dc26", + "language": "JavaScript", + "lines": 1, + "truncated": false, + "block": 1, + "row": 1525 + }, + { + "path": "docs/generate_script_docs.py", + "sha256": "4e31bce0f0f899d4399454a6d3a2e69d459f4dbb80cdb9366255ac11b67a7373", + "language": "Python", + "lines": 311, + "truncated": false, + "block": 1, + "row": 8817 + }, + { + "path": "docs/source/conf.py", + "sha256": "4f663af62328c997e1355b66d2a0eae1de69c592dbbbd2146fca6d4539376c39", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 1, + "row": 6181 + }, + { + "path": "examples/synthseg_registration.py", + "sha256": "c711e5837612036ec3eb61c7e2523c5f177c3424f310d41c1b63929c975e41ca", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 1, + "row": 7284 + }, + { + "path": "micaflow/__init__.py", + "sha256": "3ebbb4065141012142168ecc70776886d2a452d80c3c3c1b19fc94665136fd5c", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4965 + }, + { + "path": "micaflow/cli.py", + "sha256": "baf3cc3a4d0d32c4b6e404d62a03f50ff02ff49148e259ade91bdd7e111e7ef9", + "language": "Python", + "lines": 1925, + "truncated": false, + "block": 1, + "row": 9850 + }, + { + "path": "micaflow/scripts/SDC.py", + "sha256": "6d829bd1b98255c051c124bd2388a95dcebedf56559ce1a373549fcd9ea2293c", + "language": "Python", + "lines": 862, + "truncated": false, + "block": 1, + "row": 9678 + }, + { + "path": "micaflow/scripts/apply_SDC.py", + "sha256": "77994e14f0ead64c26f5a75e3861bc69f3c2ac34c953b782c04093ad930b7a2e", + "language": "Python", + "lines": 301, + "truncated": false, + "block": 1, + "row": 8900 + }, + { + "path": "micaflow/scripts/apply_warp.py", + "sha256": "8b24ac3aacd4e30950932227d4016c4f564425113399d1528d3165efe97f9d0e", + "language": "Python", + "lines": 332, + "truncated": false, + "block": 1, + "row": 9016 + }, + { + "path": "micaflow/scripts/bet.py", + "sha256": "45b709a3442f5f8767f248f552a87812bef806f23a99e3e83e2a0a2f29af6027", + "language": "Python", + "lines": 344, + "truncated": false, + "block": 1, + "row": 9040 + }, + { + "path": "micaflow/scripts/bias_correction.py", + "sha256": "eb0e63cc9b017946d3d254c17eab2000d7d198f754c6226f3c0e3b12ec33808d", + "language": "Python", + "lines": 1182, + "truncated": false, + "block": 1, + "row": 9748 + }, + { + "path": "micaflow/scripts/calculate_dice.py", + "sha256": "35ce2b03d6d4490a58dbce04de24cfa1051cf7218e78446c447ff66e28d9fd9e", + "language": "Python", + "lines": 286, + "truncated": false, + "block": 1, + "row": 8798 + }, + { + "path": "micaflow/scripts/compute_fa_md.py", + "sha256": "3fbb4448ae7c0f82af8c7ec9d72331c1f93b3d30ed7b3c30257349252f4a1dcc", + "language": "Python", + "lines": 616, + "truncated": false, + "block": 1, + "row": 9492 + }, + { + "path": "micaflow/scripts/coregister.py", + "sha256": "ff3d0fb893ea262407ce2266e74704599b86ef99893a91638d1db73b5476ca15", + "language": "Python", + "lines": 593, + "truncated": false, + "block": 1, + "row": 9566 + }, + { + "path": "micaflow/scripts/denoise.py", + "sha256": "bb227e7cefb8f77b76896e19bc68051bc39108fdd2a2009fdc28474191485d84", + "language": "Python", + "lines": 548, + "truncated": false, + "block": 1, + "row": 9393 + }, + { + "path": "micaflow/scripts/extract_b0.py", + "sha256": "fb66a876a254277843caad6d6eeab5317b4c207de8da37567f38b820ed3b6dd1", + "language": "Python", + "lines": 826, + "truncated": false, + "block": 1, + "row": 9681 + }, + { + "path": "micaflow/scripts/motion_correction.py", + "sha256": "3ff8e5460fe811f8a8f6c6c25ab8f04ced12eb9a6f27b88fde1fc1cf8aabb09f", + "language": "Python", + "lines": 938, + "truncated": false, + "block": 1, + "row": 9724 + }, + { + "path": "micaflow/scripts/normalize.py", + "sha256": "8ffcabd3ce772bebf429589210c1ba6c61a7f6feaae89b9b00994836d9a29042", + "language": "Python", + "lines": 589, + "truncated": false, + "block": 1, + "row": 9442 + }, + { + "path": "micaflow/scripts/synb0_DISCO/inference.py", + "sha256": "392598a6f762ad9731ae86a31b2ca1eef310db6dc85eb686ba68a50af22e6f81", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 1, + "row": 7532 + }, + { + "path": "micaflow/scripts/synb0_DISCO/model.py", + "sha256": "850f563f3bd5d9a3be8ef19d05cb265dc0fe19c1fb0ca77bb7a84dcc862284f4", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 1, + "row": 7093 + }, + { + "path": "micaflow/scripts/synb0_DISCO/util.py", + "sha256": "a9fd5a2103399e104af84e2c32fb180d60778a667c26c0676db54b8797702a4e", + "language": "Python", + "lines": 108, + "truncated": false, + "block": 1, + "row": 6624 + }, + { + "path": "micaflow/scripts/synth_b0.py", + "sha256": "d2c09ca732318e69b833e2d805efbcac8495d30869f06f4d4bc51d33d31e53b3", + "language": "Python", + "lines": 907, + "truncated": false, + "block": 1, + "row": 9705 + }, + { + "path": "micaflow/scripts/synthseg.py", + "sha256": "b33ade702e7b4367becc01101a59f1370afc49d755d3c9208959af52e3a9db72", + "language": "Python", + "lines": 448, + "truncated": false, + "block": 1, + "row": 9072 + }, + { + "path": "micaflow/scripts/texture_generation.py", + "sha256": "ba098601ed75ba84772c1121b681dfeeb74213a4fde6dc2e9e13b4fe1267d1b0", + "language": "Python", + "lines": 449, + "truncated": false, + "block": 1, + "row": 9273 + }, + { + "path": "micaflow/scripts/util_bids_pathing.py", + "sha256": "9eab57faf0c8064aad4d7c4300065720f70276037812e71dc03f25b5fd0f69f7", + "language": "Python", + "lines": 392, + "truncated": false, + "block": 1, + "row": 9131 + }, + { + "path": "tests/test_cli_interface.py", + "sha256": "2d999e6ac3c05800c9746c649ebe422be62529f196226b9d3a044ddd1d91cc70", + "language": "Python", + "lines": 162, + "truncated": false, + "block": 1, + "row": 7946 + }, + { + "path": "tests/test_util_bids_pathing.py", + "sha256": "a94d215b862049d24770d9bb751e356fcb85439f5ae3e885a9f0d9a53495a937", + "language": "Python", + "lines": 373, + "truncated": false, + "block": 1, + "row": 9227 + } + ] +} \ No newline at end of file diff --git a/manifests/1b/github.com__rajanlab__curbd.json b/manifests/1b/github.com__rajanlab__curbd.json new file mode 100644 index 0000000000000000000000000000000000000000..5e055a1307fbaf722e94a8dc512789fdf0d53cea --- /dev/null +++ b/manifests/1b/github.com__rajanlab__curbd.json @@ -0,0 +1,93 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/rajanlab/curbd", + "url": "https://github.com/rajanlab/CURBD", + "host": "github.com", + "commit": "08bb0192d919a9eb5e6ded42d0a0f15c128ed65e", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "CURBD_example.m", + "sha256": "c660e75750f2abfbdbf355f2f21f7ae4988cf76bc0d24744f348a8c932069631", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 2, + "row": 1318 + }, + { + "path": "CURBD_example.py", + "sha256": "ed1e480adaecdd9f2183dfc81155e989b3b84940e2ae1f06e573987802859784", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 2, + "row": 1784 + }, + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "447030950004cd1fc19085162c9c9ac075b231b898786bb03a0036b2b120ee34", + "language": "Text", + "lines": 7, + "truncated": false, + "block": 2, + "row": 2591 + }, + { + "path": "assignParams.m", + "sha256": "fdf2d90150a8ae3ca821c56bb7992b34dbdd1f6fabd7797c590da9c92c1bdcec", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 2, + "row": 1302 + }, + { + "path": "computeCURBD.m", + "sha256": "cc5f3d26edb88891ea9b1ef2be0a3bca6519ca46564206f9facf35553f67cf5a", + "language": "MATLAB", + "lines": 76, + "truncated": false, + "block": 2, + "row": 1382 + }, + { + "path": "curbd.py", + "sha256": "630401c2039231834d995c9bb5c34dc50562ceb7ffab8b96cedf0c1671c321b0", + "language": "Python", + "lines": 616, + "truncated": false, + "block": 2, + "row": 2170 + }, + { + "path": "threeRegionSim.m", + "sha256": "e553ab60ac58d150c5b4d0b45c46e9f75ecf5f635faa246fe313c40cd8402d53", + "language": "MATLAB", + "lines": 300, + "truncated": false, + "block": 2, + "row": 1519 + }, + { + "path": "trainMultiRegionRNN.m", + "sha256": "1e4ceecff884ce895f909c4ecc435b35d2b58f9bf925560354327badcc04ead2", + "language": "MATLAB", + "lines": 313, + "truncated": false, + "block": 2, + "row": 1531 + } + ] +} \ No newline at end of file diff --git a/manifests/1b/github.com__tkzeng__pangolin.json b/manifests/1b/github.com__tkzeng__pangolin.json new file mode 100644 index 0000000000000000000000000000000000000000..58cd8d7105f92aa24289df5b27eb79f5b48bcc86 --- /dev/null +++ b/manifests/1b/github.com__tkzeng__pangolin.json @@ -0,0 +1,84 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/tkzeng/pangolin", + "url": "https://github.com/tkzeng/Pangolin", + "host": "github.com", + "commit": "5cf94b8db938c658391b4305cd7ce33297d44ff7", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "PangolinColab.ipynb", + "sha256": "95f0c452ef6d7456258b456c64291a95763460d3a4ccde4be9ffd0a0d2958dbb", + "language": "Jupyter", + "lines": 44, + "truncated": false, + "block": 1, + "row": 1692 + }, + { + "path": "README.md", + "sha256": "9117f9d255d6b6e810d224a600d381192bccccd3f0cd417fed9559d49ca8fffd", + "language": "Text", + "lines": 83, + "truncated": false, + "block": 1, + "row": 11906 + }, + { + "path": "pangolin/model.py", + "sha256": "4a1c5c2570aafe1452bb43332255321677e6c6c817adf84b9dd438e3ca4be6f8", + "language": "Python", + "lines": 83, + "truncated": false, + "block": 1, + "row": 6763 + }, + { + "path": "pangolin/pangolin.py", + "sha256": "f3f25c4febf64d01ef42f967dc5cf10f6856bf3aa92d26f09803ad408169da9b", + "language": "Python", + "lines": 284, + "truncated": false, + "block": 1, + "row": 8778 + }, + { + "path": "scripts/create_db.py", + "sha256": "b95a16d0b529ec9054e394a5d6d5213c268d63df243fea35513d20b949a7cab5", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 1, + "row": 5873 + }, + { + "path": "scripts/custom_usage.py", + "sha256": "c5801d91aadb66a8e7214514b662d51a386f6ec7477ab0b7af7301b66cb9a06a", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 1, + "row": 6494 + }, + { + "path": "setup.py", + "sha256": "2dd5c6abefd582be2249180412a46a77c7573cc1c1a54301232a4f1e43c0aa76", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 1, + "row": 5501 + } + ] +} \ No newline at end of file diff --git a/manifests/1b/github.com__zifanzhu__deeplink.json b/manifests/1b/github.com__zifanzhu__deeplink.json new file mode 100644 index 0000000000000000000000000000000000000000..354af036cb07b8323268a67e6d8704285619917a --- /dev/null +++ b/manifests/1b/github.com__zifanzhu__deeplink.json @@ -0,0 +1,642 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/zifanzhu/deeplink", + "url": "https://github.com/zifanzhu/DeepLINK", + "host": "github.com", + "commit": "ab45db7ae7293f1d82c12a954af12f690263c88b", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "a287ca9c9c199c898ba2fa3b7a4b5d00cef82b10dd9630c59c77e9b8fca6f4a6", + "language": "Text", + "lines": 82, + "truncated": false, + "block": 1, + "row": 11913 + }, + { + "path": "Real_data_analyses/comparison/findout_size/findsize_multiple_d_rna1.R", + "sha256": "f4a2b8b97427973ec5c9a4aba62d10dab01fe1b0958db5a2d42049ab50cca8bc", + "language": "R", + "lines": 15, + "truncated": false, + "block": 1, + "row": 9938 + }, + { + "path": "Real_data_analyses/comparison/findout_size/findsize_multiple_d_rna2.R", + "sha256": "5e7def9e993a977eb4668251f0321ede6ff4771d6f297eabd68c1c7bd300c9ae", + "language": "R", + "lines": 15, + "truncated": false, + "block": 1, + "row": 9937 + }, + { + "path": "Real_data_analyses/comparison/findout_size/findsize_multiple_d_zeller.R", + "sha256": "6cbf55d413ab2c6b7d7ea94ed540602ece759e1a52c140ae4761a62af3d6905a", + "language": "R", + "lines": 17, + "truncated": false, + "block": 1, + "row": 9959 + }, + { + "path": "Real_data_analyses/comparison/screen_ipad_rf_rna1_d100.R", + "sha256": "37ccb390a2b1e2eedf031d3a8bc2ff778245a7d588a3237d8e5c30eb53b4baa5", + "language": "R", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10251 + }, + { + "path": "Real_data_analyses/comparison/screen_ipad_rf_rna1_d20.R", + "sha256": "097e9d03e0c1a3cee499481966d64ed16f2b826afe055649a2958da3a9ba5315", + "language": "R", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10241 + }, + { + "path": "Real_data_analyses/comparison/screen_ipad_rf_rna1_d200.R", + "sha256": "6662939a5a670cb6f32f9c80a2c7c2997a88b64861ca8231e1dc46302a348ece", + "language": "R", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10252 + }, + { + "path": "Real_data_analyses/comparison/screen_ipad_rf_rna1_d30.R", + "sha256": "2b390af4b2ee745717c72d5807397febd42807a75431e027578c01079c898603", + "language": "R", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10243 + }, + { + "path": "Real_data_analyses/comparison/screen_ipad_rf_rna1_d300.R", + "sha256": "9452b6e9781278c133c3e66a47fd3f6e7641f1d63d8b925f21b74fc6d02b5770", + "language": "R", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10255 + }, + { + "path": "Real_data_analyses/comparison/screen_ipad_rf_rna1_d40.R", + "sha256": "72cd36753695083e8d9e4e670b3bdb9e37eb18a6f46ba3cb3108c307c76cf4f2", + "language": "R", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10245 + }, + { + "path": "Real_data_analyses/comparison/screen_ipad_rf_rna1_d400.R", + "sha256": "d21d643fbe373015b763024537eebc9ffed2a3ac1286d81396b2014decfd8c32", + "language": "R", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10257 + }, + { + "path": "Real_data_analyses/comparison/screen_ipad_rf_rna1_d50.R", + "sha256": "7fd0d1f5d48f1a78cd752536bbdbb471e45047f0ae4d837a30daec198bfeba10", + "language": "R", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10246 + }, + { + "path": "Real_data_analyses/comparison/screen_ipad_rf_rna1_d500.R", + "sha256": "959e57748b65d7171dd85cb1371af439d33285da0b1657eb4ab19ae0a993e52d", + "language": "R", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10256 + }, + { + "path": "Real_data_analyses/comparison/screen_ipad_rf_rna2_d100.R", + "sha256": "7fd736e39a648ab099e497a28db1a9c1a2dda49488c5f9ddb45c8ff1981fe077", + "language": "R", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10254 + }, + { + "path": "Real_data_analyses/comparison/screen_ipad_rf_rna2_d20.R", + "sha256": "383546ba84211957a563d2e0758e45966722b88056e9bd09c471cf227cda85b3", + "language": "R", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10244 + }, + { + "path": "Real_data_analyses/comparison/screen_ipad_rf_rna2_d200.R", + "sha256": "7589e55565578dadeacc577c933778795b1f13e1e38faa44301a7062b70f0308", + "language": "R", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10253 + }, + { + "path": "Real_data_analyses/comparison/screen_ipad_rf_rna2_d30.R", + "sha256": "00a5976d32482eb7e9ace1e30cadeda1465977ce4ee751aa3efcd9fc48ddfa6b", + "language": "R", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10240 + }, + { + "path": "Real_data_analyses/comparison/screen_ipad_rf_rna2_d300.R", + "sha256": "254732e530606ed141e88fdff7d1607d6ee22813f2ee2dd1150ae0a911e743d9", + "language": "R", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10250 + }, + { + "path": "Real_data_analyses/comparison/screen_ipad_rf_rna2_d40.R", + "sha256": "0cc13f8736239536f5ca423d8256c6f779ed13f512cdad0dd90018783b490571", + "language": "R", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10242 + }, + { + "path": "Real_data_analyses/comparison/screen_ipad_rf_rna2_d400.R", + "sha256": "17ad8d370e3aea49864d4b249134bd9057f67bec81063cfa7b1e123f2614b8e4", + "language": "R", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10249 + }, + { + "path": "Real_data_analyses/comparison/screen_ipad_rf_rna2_d50.R", + "sha256": "b2af06dc83a2f72a0d7fa7a6bda5835af028ff59ec68b954af7aeaa8b9ce0ead", + "language": "R", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10247 + }, + { + "path": "Real_data_analyses/comparison/screen_ipad_rf_rna2_d500.R", + "sha256": "1306cc16abb49c76302296e903b5f7e8f55c265e3cc344b416d057746264fec7", + "language": "R", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10248 + }, + { + "path": "Real_data_analyses/comparison/screen_ipad_rf_zeller_d100.R", + "sha256": "ffe0993a121c835f72482dd3543ac2e00bb509da9d26635e91a91f6ebf63d57d", + "language": "R", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10237 + }, + { + "path": "Real_data_analyses/comparison/screen_ipad_rf_zeller_d20.R", + "sha256": "ef6e37f0b90d1196efffcd75993e9cf51f7475e877c9e63b9952fe09766bcfad", + "language": "R", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10236 + }, + { + "path": "Real_data_analyses/comparison/screen_ipad_rf_zeller_d30.R", + "sha256": "b89ad477c0e4725e75a1a9b299e99f317da9cb9437f0db11ea0c7654111ffde1", + "language": "R", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10235 + }, + { + "path": "Real_data_analyses/comparison/screen_ipad_rf_zeller_d40.R", + "sha256": "4a3e94f0860ab7f669937bdb657e717eb19603643a7ef7762f774bae0e6cf6b7", + "language": "R", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10233 + }, + { + "path": "Real_data_analyses/comparison/screen_ipad_rf_zeller_d50.R", + "sha256": "7b113432f1416912eee5053c0b1d693f6a669e1fe50cc438aaae72d395cf878b", + "language": "R", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10234 + }, + { + "path": "Real_data_analyses/human_microbiome/DeepLINK.py", + "sha256": "42c7ec7b4d6c1f16c16926abf4460a97b94cffeb1a5b5036fce3a9302708f262", + "language": "Python", + "lines": 205, + "truncated": false, + "block": 1, + "row": 7828 + }, + { + "path": "Real_data_analyses/human_microbiome/lasso_log_square.py", + "sha256": "66a16ae5a872e9d00c93c166aa148cbd66bcbcca3f685e386c1726fb0b059adf", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 1, + "row": 6916 + }, + { + "path": "Real_data_analyses/human_microbiome/newdata1_v1.py", + "sha256": "8b761cc8b1fd8c3793d7e1005dfc93a6983b3370b51107b26859c3871e468eb3", + "language": "Python", + "lines": 179, + "truncated": false, + "block": 1, + "row": 7747 + }, + { + "path": "Real_data_analyses/human_microbiome/newdata1_v2.py", + "sha256": "08aded787fcafa818f946afaddf3a4661cdde447821c176e6a5076cfef18ff3c", + "language": "Python", + "lines": 179, + "truncated": false, + "block": 1, + "row": 7745 + }, + { + "path": "Real_data_analyses/human_microbiome/newdata1_v3.py", + "sha256": "4e4f2698023f3ae772a383966cdcd1ac06d0f94ed465c23e068afa55b29a50e5", + "language": "Python", + "lines": 179, + "truncated": false, + "block": 1, + "row": 7746 + }, + { + "path": "Real_data_analyses/human_microbiome/newdata1_v4.py", + "sha256": "e51369d99fb82fb7adc287dfcab3a590f571b8d992fb3e422b147476d0d7c8b2", + "language": "Python", + "lines": 179, + "truncated": false, + "block": 1, + "row": 7748 + }, + { + "path": "Real_data_analyses/human_microbiome/newdata1_v5.py", + "sha256": "b9431a7a84a7da0213b3d3b8aed10a84c30be880588a90e42e02876b718cadcf", + "language": "Python", + "lines": 179, + "truncated": false, + "block": 1, + "row": 7749 + }, + { + "path": "Real_data_analyses/human_microbiome/newdata1_v6.py", + "sha256": "cb516ff1ca056bd01178f2ace32a42c9562a94aa7450ca529ab8b9d71ebf5237", + "language": "Python", + "lines": 179, + "truncated": false, + "block": 1, + "row": 7750 + }, + { + "path": "Real_data_analyses/human_microbiome/pairwise_connected_layer.py", + "sha256": "3b1a1c64519c3aeb6b179b8ea9074d2239915d6ef01ef7ea19a1c5211b8b8cba", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 1, + "row": 5596 + }, + { + "path": "Real_data_analyses/human_microbiome/screening.R", + "sha256": "fe67f4f8940fbda28d1ca4879ce6556783492ad4cd3f9c94f1e13d112d4ada8a", + "language": "R", + "lines": 40, + "truncated": false, + "block": 1, + "row": 10006 + }, + { + "path": "Real_data_analyses/human_microbiome/summarize_multiple_d.R", + "sha256": "52669b58d5b46dd2a8db35b8e1c32b158d78cbee689b9a04509eb04247dbd2c3", + "language": "R", + "lines": 43, + "truncated": false, + "block": 1, + "row": 10034 + }, + { + "path": "Real_data_analyses/human_sc_RNAseq/DeepLINK.py", + "sha256": "42c7ec7b4d6c1f16c16926abf4460a97b94cffeb1a5b5036fce3a9302708f262", + "language": "Python", + "lines": 205, + "truncated": false, + "block": 1, + "row": 7828 + }, + { + "path": "Real_data_analyses/human_sc_RNAseq/lasso_log_square.py", + "sha256": "66a16ae5a872e9d00c93c166aa148cbd66bcbcca3f685e386c1726fb0b059adf", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 1, + "row": 6916 + }, + { + "path": "Real_data_analyses/human_sc_RNAseq/pairwise_connected_layer.py", + "sha256": "3b1a1c64519c3aeb6b179b8ea9074d2239915d6ef01ef7ea19a1c5211b8b8cba", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 1, + "row": 5596 + }, + { + "path": "Real_data_analyses/human_sc_RNAseq/rna2_v1_d20.py", + "sha256": "abb01689b5db753cb5cce91e389cc2889996aee8574e5d07a87f3c88b985a19c", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 1, + "row": 7787 + }, + { + "path": "Real_data_analyses/human_sc_RNAseq/rna2_v2_d30.py", + "sha256": "3768fd1e011570c70d4f3af3f6e70ef31f0f03e216334bd862ead90627266882", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 1, + "row": 7784 + }, + { + "path": "Real_data_analyses/human_sc_RNAseq/rna2_v3_d40.py", + "sha256": "7cdd463c5d4264f070e53d2edd11ddfc7ab2aea1e37c02a3dff7b713ea1b66d7", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 1, + "row": 7785 + }, + { + "path": "Real_data_analyses/human_sc_RNAseq/rna2_v4_d50.py", + "sha256": "a1d9795cdd817eb29c09be941cb9c04c7bc5d252047ad8add8fbf9d46d204443", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 1, + "row": 7786 + }, + { + "path": "Real_data_analyses/human_sc_RNAseq/rna2_v5_d100.py", + "sha256": "7e3fe46b82f2a6b9476b231410d8a664aac02b6076a00d7b9a76c4923413310a", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 1, + "row": 7791 + }, + { + "path": "Real_data_analyses/human_sc_RNAseq/rna2_v6_d200.py", + "sha256": "1ae2f1458bee0df26a36115af59bc0e6d86246510b03a71f152de1282939b2fc", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 1, + "row": 7788 + }, + { + "path": "Real_data_analyses/human_sc_RNAseq/rna2_v7_d300.py", + "sha256": "e115b510b03c0f2628c5d670e7e2231ad210dbd7388d3bd945b240ebea7139d1", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 1, + "row": 7794 + }, + { + "path": "Real_data_analyses/human_sc_RNAseq/rna2_v8_d400.py", + "sha256": "cc811487b491ce5db0df11666ac6d0946d818072f9f6596a1a2dbb10838e361d", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 1, + "row": 7793 + }, + { + "path": "Real_data_analyses/human_sc_RNAseq/rna2_v9_d500.py", + "sha256": "faefa3cec1247894030b25df9077f48d47cb0f3099c8595c6247da9f98dc4499", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 1, + "row": 7796 + }, + { + "path": "Real_data_analyses/human_sc_RNAseq/screening.R", + "sha256": "765081eab8361f2fc96ecbc6d807338ba7448e2fb4f6e129d45d01efcba6ed99", + "language": "R", + "lines": 47, + "truncated": false, + "block": 1, + "row": 10016 + }, + { + "path": "Real_data_analyses/murine_sc_RNAseq/DeepLINK.py", + "sha256": "42c7ec7b4d6c1f16c16926abf4460a97b94cffeb1a5b5036fce3a9302708f262", + "language": "Python", + "lines": 205, + "truncated": false, + "block": 1, + "row": 7828 + }, + { + "path": "Real_data_analyses/murine_sc_RNAseq/lasso_log_square.py", + "sha256": "66a16ae5a872e9d00c93c166aa148cbd66bcbcca3f685e386c1726fb0b059adf", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 1, + "row": 6916 + }, + { + "path": "Real_data_analyses/murine_sc_RNAseq/pairwise_connected_layer.py", + "sha256": "3b1a1c64519c3aeb6b179b8ea9074d2239915d6ef01ef7ea19a1c5211b8b8cba", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 1, + "row": 5596 + }, + { + "path": "Real_data_analyses/murine_sc_RNAseq/rna1_v1_d20.py", + "sha256": "ed5537466493819e67fc4018f6de77c6c7f0c368c7c98e64cc6c95d3097bc9ee", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 1, + "row": 7795 + }, + { + "path": "Real_data_analyses/murine_sc_RNAseq/rna1_v2_d30.py", + "sha256": "a22cbe555e954a2333bc362568f7d3bda9d9be4aecf3a5e02ea2a6f54e84c7cd", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 1, + "row": 7792 + }, + { + "path": "Real_data_analyses/murine_sc_RNAseq/rna1_v3_d40.py", + "sha256": "2aca064ab4df9207091832086b62eb5d9492575507e6860ab7b708c3300166a9", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 1, + "row": 7789 + }, + { + "path": "Real_data_analyses/murine_sc_RNAseq/rna1_v4_d50.py", + "sha256": "3cebda2706910a2d80a783e37bdd7d6d4ae6448bac65471dfbff1b69dc7e3aba", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 1, + "row": 7790 + }, + { + "path": "Real_data_analyses/murine_sc_RNAseq/rna1_v5_d100.py", + "sha256": "e823e9ececd542fdd7305f8c5ac01597840ec52fbe95abcaf56f2ef53a6ac8b6", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 1, + "row": 7800 + }, + { + "path": "Real_data_analyses/murine_sc_RNAseq/rna1_v6_d200.py", + "sha256": "12a31f819e242360c0b10016203b3389ed949e290e115d6dffa4df0db5ada863", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 1, + "row": 7797 + }, + { + "path": "Real_data_analyses/murine_sc_RNAseq/rna1_v7_d300.py", + "sha256": "8b27bb79c2d467748cf037d69861bbdcdb0af031a941a027301e860208bb918c", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 1, + "row": 7798 + }, + { + "path": "Real_data_analyses/murine_sc_RNAseq/rna1_v8_d400.py", + "sha256": "b449296b97c758689a45666481c75ada30f92b109c57b5d6c3867926c62e727a", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 1, + "row": 7799 + }, + { + "path": "Real_data_analyses/murine_sc_RNAseq/rna1_v9_d500.py", + "sha256": "f25cf7ac5a32f5881194ab75818919c893d6f7b6b55c0dd5432656ee2d7974d4", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 1, + "row": 7801 + }, + { + "path": "Real_data_analyses/murine_sc_RNAseq/screening.R", + "sha256": "5e27194807445951486166870645adb3b525a96862c73b505ccca84062f08626", + "language": "R", + "lines": 47, + "truncated": false, + "block": 1, + "row": 10017 + }, + { + "path": "Simulations/DeepLINK.py", + "sha256": "6ca09b94edb115b38c19c3b311f7119d83ac3d423f012590c6e7c0fcf2281858", + "language": "Python", + "lines": 200, + "truncated": false, + "block": 1, + "row": 7736 + }, + { + "path": "Simulations/PCp1_numFactors.py", + "sha256": "152d0cf90c8e6de6a6f6acb916891ed8e4959e4f0130c389a3b19f8fc4d0ce9b", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 1, + "row": 5574 + }, + { + "path": "Simulations/example.py", + "sha256": "d4b688e10d9692bcfa756720920314347f31df3a13d37cff3c0a501c2ac6610a", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 1, + "row": 6390 + }, + { + "path": "Simulations/pairwise_connected_layer.py", + "sha256": "3b1a1c64519c3aeb6b179b8ea9074d2239915d6ef01ef7ea19a1c5211b8b8cba", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 1, + "row": 5596 + }, + { + "path": "deeplink.py", + "sha256": "9be03f65ef94e53ad63452e2dbec38e3c9b82a8099da3756d58f76d63eefbb03", + "language": "Python", + "lines": 149, + "truncated": false, + "block": 1, + "row": 7642 + } + ] +} \ No newline at end of file diff --git a/manifests/1b/zenodo__19905547.json b/manifests/1b/zenodo__19905547.json new file mode 100644 index 0000000000000000000000000000000000000000..b70a1093c7e704a68332feb10d7c89f3eae243c2 --- /dev/null +++ b/manifests/1b/zenodo__19905547.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:19905547", + "url": "https://doi.org/10.5281/zenodo.19905547", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "run_LFA.m", + "sha256": "6809a3210d1dceabf68c98b25e6597830911705f37cabfba38bd21546bb23e69", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 1, + "row": 3080 + }, + { + "path": "run_LFA_with_DMD.m", + "sha256": "985af091285725677c623bfe3d80a75f47602625599c910724b99c7a563bbd22", + "language": "MATLAB", + "lines": 78, + "truncated": false, + "block": 1, + "row": 3174 + } + ] +} \ No newline at end of file diff --git a/manifests/1c/zenodo__20729243.json b/manifests/1c/zenodo__20729243.json new file mode 100644 index 0000000000000000000000000000000000000000..e036399e6666c99b04970ef725304bf20899ef01 --- /dev/null +++ b/manifests/1c/zenodo__20729243.json @@ -0,0 +1,147 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:20729243", + "url": "10.5281/zenodo.20729243", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Figure 2E(newly added during revision) and Figure S4.ipynb", + "sha256": "8bf92b2b610a5c4d87ee7f792f53ba7988abc6ca38581f6c4ede734ef64502d2", + "language": "Jupyter", + "lines": 435, + "truncated": false, + "block": 2, + "row": 1090 + }, + { + "path": "Figure S1.ipynb", + "sha256": "8ee1f412b6f7a47179298372297e1801862cb6c3054eb78f49c2efaefa8434bd", + "language": "Jupyter", + "lines": 348, + "truncated": false, + "block": 2, + "row": 1077 + }, + { + "path": "Figure S10 S11 S12.ipynb", + "sha256": "790148784af2c819656c4858fca017eca55ddd82292ded8767762b2b0254762b", + "language": "Jupyter", + "lines": 329, + "truncated": false, + "block": 2, + "row": 1075 + }, + { + "path": "Figure S5.ipynb", + "sha256": "2dacc61b78a0d6365d6cc7a775a5bc2ff32e8348435f8e537e5fd77cc71bed60", + "language": "Jupyter", + "lines": 450, + "truncated": false, + "block": 2, + "row": 1087 + }, + { + "path": "Figure S6.ipynb", + "sha256": "ce5f66751a49b283399783f4660360b5e12b4cb1fb4d790ad8fdda3eb30361dd", + "language": "Jupyter", + "lines": 470, + "truncated": false, + "block": 2, + "row": 1096 + }, + { + "path": "Figure S7.ipynb", + "sha256": "dd282a3bac1558fce3e278f2836d22f387d4bed195a7255d10eb8a0e5739f824", + "language": "Jupyter", + "lines": 877, + "truncated": false, + "block": 2, + "row": 1110 + }, + { + "path": "Figure S8.ipynb", + "sha256": "9220ad935c24dc7f28982cbea8808d282d580963763f90a25d8e05e1efc00e65", + "language": "Jupyter", + "lines": 1099, + "truncated": false, + "block": 2, + "row": 1114 + }, + { + "path": "Figure2+S2+S3.ipynb", + "sha256": "e18fb259749cf14f5f13eed2719d7853983c2156818fcc0f9e650110f8491efb", + "language": "Jupyter", + "lines": 835, + "truncated": false, + "block": 2, + "row": 1107 + }, + { + "path": "Figure3.ipynb", + "sha256": "282e1db63eb2a376c3ea1e85ae1f235af2fe38835a85a519e3049ab0f07e3316", + "language": "Jupyter", + "lines": 130, + "truncated": false, + "block": 2, + "row": 1022 + }, + { + "path": "Figure4.ipynb", + "sha256": "53c8d25020d199c41f8205926f5a7748f8df1eb8279779866736ea560e9d0c88", + "language": "Jupyter", + "lines": 107, + "truncated": false, + "block": 2, + "row": 1019 + }, + { + "path": "Figure5.ipynb", + "sha256": "38178ee09d9ecab213c6122aff2e1b0146bbc89a508e72f19ec9ea6c605135c7", + "language": "Jupyter", + "lines": 911, + "truncated": false, + "block": 2, + "row": 1111 + }, + { + "path": "Figure6.ipynb", + "sha256": "8d7d8c3bcd78b849f8cde002cefe258483b8f24fcfe3dc22b1e42051e9e71ec2", + "language": "Jupyter", + "lines": 169, + "truncated": false, + "block": 2, + "row": 1052 + }, + { + "path": "LICENSE", + "sha256": "920598ec128a27344ecabe35a000aec45e0c43e145b327385256715d44328a99", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1126 + }, + { + "path": "README.md", + "sha256": "7c4a236a8d4f50e8d9be1821f68fb9c4205d5f096206316c74d80acb2f0cd35e", + "language": "Text", + "lines": 101, + "truncated": false, + "block": 2, + "row": 2615 + }, + { + "path": "rank_item.py", + "sha256": "4d1431c8cef761a53940e2cef61c5a80205481ed7c18f154bea27091f7807621", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 2, + "row": 1840 + } + ] +} \ No newline at end of file diff --git a/manifests/1d/github.com__projectmesa__mesa.json b/manifests/1d/github.com__projectmesa__mesa.json new file mode 100644 index 0000000000000000000000000000000000000000..3334e96d6f62f70acbeb754614da73441c31a801 --- /dev/null +++ b/manifests/1d/github.com__projectmesa__mesa.json @@ -0,0 +1,1389 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/projectmesa/mesa", + "url": "https://github.com/projectmesa/mesa", + "host": "github.com", + "commit": "f85955b7ecc3a6d79d8bfaec2d0b406d85c8f0a6", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "cfc7749b96f63bd31c3c42b5c471bf756814053e847c10f3eb003417bc523d30", + "language": "License", + "lines": 202, + "truncated": false, + "block": 1, + "row": 2217 + }, + { + "path": "README.md", + "sha256": "10e6054aab9ad8fdd86bc605f2b72d01503cd8d1ada4fd9aa39b031b9efc81e2", + "language": "Text", + "lines": 142, + "truncated": false, + "block": 1, + "row": 11942 + }, + { + "path": "benchmarks/compare_timings.py", + "sha256": "90827131110b71e92bc4d384908a2eba932a475f57d0da15a69df09d3964da24", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 1, + "row": 6819 + }, + { + "path": "benchmarks/configurations.py", + "sha256": "9c312e09bd5021a3b64fd960e190a9d60f34e22515832289f608c97b2821d92a", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 1, + "row": 7241 + }, + { + "path": "benchmarks/global_benchmark.py", + "sha256": "59331826dbc4481897879b0166c0b39207536ddc0fabf21b5edb3d402ee2e7ab", + "language": "Python", + "lines": 112, + "truncated": false, + "block": 1, + "row": 6891 + }, + { + "path": "docs/conf.py", + "sha256": "2618dfd7ba2a510956df186a26069bda1aa6ec178bbcea82e9c3f103dda95172", + "language": "Python", + "lines": 392, + "truncated": false, + "block": 1, + "row": 8844 + }, + { + "path": "docs/tutorials/0_first_model.ipynb", + "sha256": "2e65ff2b4e6a6edb4f8153390f4eab5d79ee14ce454b5090449d176eeb4e8c63", + "language": "Jupyter", + "lines": 368, + "truncated": false, + "block": 1, + "row": 1970 + }, + { + "path": "docs/tutorials/10_visualization_custom.ipynb", + "sha256": "15201247ca97792730ca01bdf4cdaf83284a07261d6c2706af67ac381568f8a2", + "language": "Jupyter", + "lines": 288, + "truncated": false, + "block": 1, + "row": 1920 + }, + { + "path": "docs/tutorials/1_agentset.ipynb", + "sha256": "941632723750fcf899e2382a2188ef3fe8d6cfd55a1dc06347d08c6c1a9cc379", + "language": "Jupyter", + "lines": 423, + "truncated": false, + "block": 1, + "row": 1961 + }, + { + "path": "docs/tutorials/2_agent_activation.ipynb", + "sha256": "5820b2941b5d78489135b1f60023ab0e08ee2f3f3939f92cdd0b0fd66fc4b2ed", + "language": "Jupyter", + "lines": 427, + "truncated": false, + "block": 1, + "row": 1958 + }, + { + "path": "docs/tutorials/3_event_scheduling.ipynb", + "sha256": "dc6e315167ce7061b665f56d3cc4bbade145eda0dfa2043595a521e71b1f7156", + "language": "Jupyter", + "lines": 611, + "truncated": false, + "block": 1, + "row": 2004 + }, + { + "path": "docs/tutorials/4_adding_space.ipynb", + "sha256": "5d560bfec7f1eaac9c2698e5c233fe7eca455e281fa79c5ba448fa429fa018d5", + "language": "Jupyter", + "lines": 254, + "truncated": false, + "block": 1, + "row": 1937 + }, + { + "path": "docs/tutorials/5_collecting_data.ipynb", + "sha256": "341d96a8b265ade59cf38185bd7c605149c5cc813df04904ce73d85d7e660109", + "language": "Jupyter", + "lines": 324, + "truncated": false, + "block": 1, + "row": 1955 + }, + { + "path": "docs/tutorials/6_visualization_basic.ipynb", + "sha256": "02576b8db31e646cf7d69c0cce16a507c53c5c89678bfb6af6e1de2dc1748e0d", + "language": "Jupyter", + "lines": 303, + "truncated": false, + "block": 1, + "row": 1938 + }, + { + "path": "docs/tutorials/7_visualization_dynamic_agents.ipynb", + "sha256": "e470c4d283a81088d555e644e235dc1cee0df9136e9b471f8a25fb354118a201", + "language": "Jupyter", + "lines": 271, + "truncated": false, + "block": 1, + "row": 1930 + }, + { + "path": "docs/tutorials/8_visualization_rendering_with_space_renderer.ipynb", + "sha256": "5f16032ac4a0868c39121a88fe8cadb71fccd3a69eef5453bd0e6f306d877df5", + "language": "Jupyter", + "lines": 396, + "truncated": false, + "block": 1, + "row": 1964 + }, + { + "path": "docs/tutorials/9_visualization_property_layer_visualization.ipynb", + "sha256": "81d2d85f953bdfe515f6a97af56b25391c86e8f9eb704fd995a0b0c633e5a208", + "language": "Jupyter", + "lines": 386, + "truncated": false, + "block": 1, + "row": 1962 + }, + { + "path": "mesa/__init__.py", + "sha256": "76afc1e7d4638f490cbf98386059057d12d549b73350d88682dbb0441d3b378c", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 1, + "row": 5495 + }, + { + "path": "mesa/agent.py", + "sha256": "84dcc67a948ec3f17f1908638f01e52e91b0e3599833bc86c13b164d42edb9ee", + "language": "Python", + "lines": 222, + "truncated": false, + "block": 1, + "row": 8172 + }, + { + "path": "mesa/agentset.py", + "sha256": "93c1bf0b17c3ce7ac19a7cb6aec11cd1c1db658f7e13228eb210243ba664c9a5", + "language": "Python", + "lines": 1160, + "truncated": false, + "block": 1, + "row": 9749 + }, + { + "path": "mesa/datacollection.py", + "sha256": "0a5ab20638dec95db3da8aacecef93a58221a7e8961b5985a0ba83762a19b8ba", + "language": "Python", + "lines": 523, + "truncated": false, + "block": 1, + "row": 9384 + }, + { + "path": "mesa/discrete_space/__init__.py", + "sha256": "7ee5096c931ca016793a79e07f900baaa2e0d1591a9e52542c05aa73cc1d407f", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 1, + "row": 6048 + }, + { + "path": "mesa/discrete_space/cell.py", + "sha256": "7fb39b42705cfd64e2d56a4fe89518d3cdb3e2da807903db35f96e00bb02207e", + "language": "Python", + "lines": 295, + "truncated": false, + "block": 1, + "row": 8411 + }, + { + "path": "mesa/discrete_space/cell_agent.py", + "sha256": "e55f7281865aa1a42bc0a7d830747a9d2948c1cb798002308da3a079f6d58572", + "language": "Python", + "lines": 226, + "truncated": false, + "block": 1, + "row": 7873 + }, + { + "path": "mesa/discrete_space/cell_collection.py", + "sha256": "eaa5d387b42bd8d1efa0e31a7c5f547419ad0aa9d8d878b16454e69dd5d67550", + "language": "Python", + "lines": 182, + "truncated": false, + "block": 1, + "row": 7735 + }, + { + "path": "mesa/discrete_space/discrete_space.py", + "sha256": "02712da6f0824e8c0a7ee63b4cc09b788205e9e837c8e63e57d10e3e53a1f54f", + "language": "Python", + "lines": 204, + "truncated": false, + "block": 1, + "row": 8066 + }, + { + "path": "mesa/discrete_space/grid.py", + "sha256": "346e63e87915b8e911cd97d4da74b36021acdff23d35c6a01478604081a55115", + "language": "Python", + "lines": 613, + "truncated": false, + "block": 1, + "row": 9402 + }, + { + "path": "mesa/discrete_space/network.py", + "sha256": "2e65aecae0c83d7d543ee2eff57ba191b54f9b60209349efd9a4e5acd26f1fbe", + "language": "Python", + "lines": 174, + "truncated": false, + "block": 1, + "row": 7737 + }, + { + "path": "mesa/discrete_space/voronoi.py", + "sha256": "cbfbf004e26a1272cd2db48bc5c89c1c41df06c082498f9501984f3c08334aef", + "language": "Python", + "lines": 312, + "truncated": false, + "block": 1, + "row": 8745 + }, + { + "path": "mesa/examples/__init__.py", + "sha256": "f5f460d4d757c1ad12fc195cba898e709378491d701da1bbc569b1315dfd8050", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 1, + "row": 5731 + }, + { + "path": "mesa/examples/advanced/alliance_formation/agents.py", + "sha256": "110b9b8505fcca38520f5398c8be2df427e84d0fbc7c9efc1c7de422c2dd3b09", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 1, + "row": 5369 + }, + { + "path": "mesa/examples/advanced/alliance_formation/app.py", + "sha256": "a38c86da87271b2aae739a423a90114a1c5ec764b440ff9d9319dc3f39240032", + "language": "Python", + "lines": 83, + "truncated": false, + "block": 1, + "row": 6449 + }, + { + "path": "mesa/examples/advanced/alliance_formation/model.py", + "sha256": "f8983edc0f990967ecfa6ccd7afdefacc07eab270bca713f9020b61402d1e984", + "language": "Python", + "lines": 199, + "truncated": false, + "block": 1, + "row": 8120 + }, + { + "path": "mesa/examples/advanced/epstein_civil_violence/Epstein Civil Violence.ipynb", + "sha256": "7a6daaf1cef075bc6a94e753b3e5db62cbfa2bb4b983305684893979877951cb", + "language": "Jupyter", + "lines": 41, + "truncated": false, + "block": 1, + "row": 1690 + }, + { + "path": "mesa/examples/advanced/epstein_civil_violence/agents.py", + "sha256": "810db7db3db7c9ddfd839219042a464a4589d94ff12aecdba1b1941e91deee54", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 1, + "row": 7333 + }, + { + "path": "mesa/examples/advanced/epstein_civil_violence/app.py", + "sha256": "8677fd4d56f7efa4d1f6ce63cb9675ce082a2af03c4e45d5ab4dd37015475fe1", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 1, + "row": 6440 + }, + { + "path": "mesa/examples/advanced/epstein_civil_violence/model.py", + "sha256": "868ead80d7bb872800bfcb2e94e4ab42774d717088c0de6d125b7ecdd83da7a9", + "language": "Python", + "lines": 125, + "truncated": false, + "block": 1, + "row": 7173 + }, + { + "path": "mesa/examples/advanced/pd_grid/agents.py", + "sha256": "44236125aafdee16f5823549c3cb4e86e7581e9dddbbfb0a7f403900e9b32080", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 1, + "row": 6098 + }, + { + "path": "mesa/examples/advanced/pd_grid/analysis.ipynb", + "sha256": "2fc3f63060d7fad9ff225ccdc45a7da42cf6f25eaae4e208e679e827e6bdac25", + "language": "Jupyter", + "lines": 86, + "truncated": false, + "block": 1, + "row": 1744 + }, + { + "path": "mesa/examples/advanced/pd_grid/app.py", + "sha256": "388fad8762eb529e41d8ce1084dc4e06a341b4c30db52dc13e45699c476ab0e1", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 1, + "row": 6096 + }, + { + "path": "mesa/examples/advanced/pd_grid/model.py", + "sha256": "69ed8e7d75d064ff8afcfe802b9f4abc8a2b46258f6ae16294368b7e842e5986", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 1, + "row": 6668 + }, + { + "path": "mesa/examples/advanced/sugarscape_g1mt/agents.py", + "sha256": "e8d656bf0d75254c4695588d1d9e4077bf6bf6fc6fa06bc5f81d4d408167739c", + "language": "Python", + "lines": 301, + "truncated": false, + "block": 1, + "row": 8282 + }, + { + "path": "mesa/examples/advanced/sugarscape_g1mt/app.py", + "sha256": "dbc7339a3c145832115c4b81e877916bcfdb1c7b53fee7b8e92b66bef9b85296", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 1, + "row": 6543 + }, + { + "path": "mesa/examples/advanced/sugarscape_g1mt/model.py", + "sha256": "b4c493217bceba4f76ad4a9757816230a41c6169dcb93332c9ec1542ff6ebd4a", + "language": "Python", + "lines": 134, + "truncated": false, + "block": 1, + "row": 7249 + }, + { + "path": "mesa/examples/advanced/wolf_sheep/agents.py", + "sha256": "fb0acd206c2765440978cfb612d45f69881b4a573922fd57606f5dbeabde9d9c", + "language": "Python", + "lines": 154, + "truncated": false, + "block": 1, + "row": 7482 + }, + { + "path": "mesa/examples/advanced/wolf_sheep/app.py", + "sha256": "defc96ef8cb9cbcf0d0dcbcd7c9d69d14727fa623b37c399e98623a298ddf9b8", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 1, + "row": 6530 + }, + { + "path": "mesa/examples/advanced/wolf_sheep/model.py", + "sha256": "2928c360260a3f001b5550ecf5b709f20be7abde9b436ece9bd61c616bcb245f", + "language": "Python", + "lines": 144, + "truncated": false, + "block": 1, + "row": 7406 + }, + { + "path": "mesa/examples/basic/boid_flockers/agents.py", + "sha256": "a00d00d0d8a54c78b45d8a2e61a35c3129a928374d60fc1f4bde8536a46e4d42", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 1, + "row": 6902 + }, + { + "path": "mesa/examples/basic/boid_flockers/app.py", + "sha256": "430e4bec6492dd1f051dd7da691c451941ce8e46c8d01b32b2576085a8cf807d", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 1, + "row": 6296 + }, + { + "path": "mesa/examples/basic/boid_flockers/model.py", + "sha256": "6176f3b272f445ad923d9fe4875a3e142279ff479b8c3958dc661d1c2e061c24", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 1, + "row": 7108 + }, + { + "path": "mesa/examples/basic/boltzmann_wealth_model/agents.py", + "sha256": "185e263448ea2d2e15838bed75e0c07ad6f2fedebd27e2dc161b5020c3810cd5", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 1, + "row": 5919 + }, + { + "path": "mesa/examples/basic/boltzmann_wealth_model/app.py", + "sha256": "47fde756a5ad4ed2b05faaefb6d3a93c0862cfa95c43a60e9198b9e7d39c237c", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 1, + "row": 6599 + }, + { + "path": "mesa/examples/basic/boltzmann_wealth_model/model.py", + "sha256": "307517d88f70e96571ecca0ee304eae01159831c30f9dadf8727086bd672c1ed", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 1, + "row": 6927 + }, + { + "path": "mesa/examples/basic/boltzmann_wealth_model/st_app.py", + "sha256": "945061e029f54c590bfb24c8d900a82843174982ced53d841581b0508b57ba64", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 1, + "row": 6979 + }, + { + "path": "mesa/examples/basic/conways_game_of_life/agents.py", + "sha256": "a41c907ae7325b950306797dd316d118924d247a4cf0d2eea9299fb7902454dd", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 1, + "row": 6156 + }, + { + "path": "mesa/examples/basic/conways_game_of_life/app.py", + "sha256": "2b2d8cff6f6f5219f205d7452a8382840f5cec58dd4615ebe41277c32937e12e", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 1, + "row": 6124 + }, + { + "path": "mesa/examples/basic/conways_game_of_life/model.py", + "sha256": "dd78891ec70340f9a3ee23f8b27ab34eb06e1631f7f878d9199948a792959f24", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 1, + "row": 5903 + }, + { + "path": "mesa/examples/basic/conways_game_of_life/st_app.py", + "sha256": "c912b824d2d08c09bfa7bf14ed7027565cbd76fc8def8a1b68148ad4464c5f8c", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 1, + "row": 6478 + }, + { + "path": "mesa/examples/basic/schelling/agents.py", + "sha256": "5906f24d3e2796742f90d1d3b38ca7953bd229e43612f7d6ec970f51ff91e59d", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 1, + "row": 6108 + }, + { + "path": "mesa/examples/basic/schelling/app.py", + "sha256": "a037e4ff7392ba48c1044e3a643501bf37fd588d86905027cdd9465607b1637c", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 1, + "row": 6507 + }, + { + "path": "mesa/examples/basic/schelling/model.py", + "sha256": "1648f9ef589fba4eabf0114c74be4303b1737ff1cff944674b2ce819a23e48a5", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 1, + "row": 6823 + }, + { + "path": "mesa/examples/basic/virus_on_network/agents.py", + "sha256": "c953d90a2288e77a9796c52eb37bdd359dfd206d1c2e8636c105de6191e26a1b", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 1, + "row": 6182 + }, + { + "path": "mesa/examples/basic/virus_on_network/app.py", + "sha256": "bfc2502308f730ec33f0d0cfa05e3dafe8384a37a552b4fbb027093b9eda4943", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 1, + "row": 6804 + }, + { + "path": "mesa/examples/basic/virus_on_network/model.py", + "sha256": "6476fceecc4517cd9d28b24d8cb1a00bf752f2283aed0463f00c1adf43820026", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 1, + "row": 6546 + }, + { + "path": "mesa/examples/experimental/tram_model/agents.py", + "sha256": "11602740f5e6c5860684c7d5432bce32fa13d3f7c9d93ce57b405bbd4a8b7e5a", + "language": "Python", + "lines": 158, + "truncated": false, + "block": 1, + "row": 7742 + }, + { + "path": "mesa/examples/experimental/tram_model/app.py", + "sha256": "3d9057ff7be90093d6ca31955188c8b04a48a748c2b1882a45f78e07b382a599", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 1, + "row": 6214 + }, + { + "path": "mesa/examples/experimental/tram_model/model.py", + "sha256": "cd58977d970b4fd24b79dc600f22359d5e7da4ab454afa16cd50d735e35e4eff", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 1, + "row": 7232 + }, + { + "path": "mesa/examples/experimental/tram_model/utils.py", + "sha256": "85ed6a24ea9993188c8728978195d4c91b77309ee299458590cd56bbfab50aba", + "language": "Python", + "lines": 223, + "truncated": false, + "block": 1, + "row": 7849 + }, + { + "path": "mesa/exceptions.py", + "sha256": "3fd6f846ddc66f3a6348779b509a63f8a7b102381aa23d14f75369e6c10e4477", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 1, + "row": 6686 + }, + { + "path": "mesa/experimental/__init__.py", + "sha256": "8e47b2f0fa462fe47d70aad6a6d4ea582535a4df5c2e0e1a04e09b55d5269f3b", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 1, + "row": 5550 + }, + { + "path": "mesa/experimental/actions/__init__.py", + "sha256": "61d9be09b2d2adab754446f4f23636a00ebfbfbd8d5708f178e3855e6a6b75ce", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 1, + "row": 5149 + }, + { + "path": "mesa/experimental/actions/actions.py", + "sha256": "7e31d894fb2750920c5c3cca91cc63f2065ceca57a404b28ac4edc46f938347d", + "language": "Python", + "lines": 721, + "truncated": false, + "block": 1, + "row": 9534 + }, + { + "path": "mesa/experimental/continuous_space/__init__.py", + "sha256": "2640a42f8cd9a5ef1cd061eac3886e336faea06398aab0b2b7b275338e789050", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 1, + "row": 5198 + }, + { + "path": "mesa/experimental/continuous_space/continuous_space.py", + "sha256": "ba20987df460788f15315c4153af0d9fa45a798da1abf862c07b76abafcbf1a5", + "language": "Python", + "lines": 298, + "truncated": false, + "block": 1, + "row": 8592 + }, + { + "path": "mesa/experimental/continuous_space/continuous_space_agents.py", + "sha256": "bd20bf060ae509cd458aa6b06f298d3d0289882a3b822195222b5d111accdd89", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 1, + "row": 6653 + }, + { + "path": "mesa/experimental/data_collection/__init__.py", + "sha256": "2af158cb427779a6e302f97582261c8b07f1075a5e5fd6ac0009d89239a58e6e", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 1, + "row": 5467 + }, + { + "path": "mesa/experimental/data_collection/basedatarecorder.py", + "sha256": "8bbaff6826684a7c0e81e37d179147689b71608009a8821a101600d4782196f8", + "language": "Python", + "lines": 303, + "truncated": false, + "block": 1, + "row": 8581 + }, + { + "path": "mesa/experimental/data_collection/datarecorders.py", + "sha256": "1e7e586c7f45d5045792622caee77227866bf7483a3db54f49155f713b7ca21e", + "language": "Python", + "lines": 691, + "truncated": false, + "block": 1, + "row": 9491 + }, + { + "path": "mesa/experimental/data_collection/dataset.py", + "sha256": "1e20085dbd15563135f548f2751a9da0b1145d190c9fcc7793cf84a198550829", + "language": "Python", + "lines": 643, + "truncated": false, + "block": 1, + "row": 9265 + }, + { + "path": "mesa/experimental/mesa_signals/__init__.py", + "sha256": "f1fcb9efb6a31ee7f0d77998d66631928dc78264018bfc5b71d05c5bd1921b00", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 1, + "row": 5780 + }, + { + "path": "mesa/experimental/mesa_signals/batching.py", + "sha256": "6b82d3061d4c601da3d7e92f36b4c27c6efdcf08338ae3122b737370ee7dd1ef", + "language": "Python", + "lines": 273, + "truncated": false, + "block": 1, + "row": 8297 + }, + { + "path": "mesa/experimental/mesa_signals/core.py", + "sha256": "f580d1ec2c993f6611ea44abbfbbd347c0ad887ced6fc358d18519853992753c", + "language": "Python", + "lines": 773, + "truncated": false, + "block": 1, + "row": 9527 + }, + { + "path": "mesa/experimental/mesa_signals/observable_collections.py", + "sha256": "65af816bc9cbbaceda1c3cfc5e057db2e7aea8266183b4e20a28d89f88cb6d4f", + "language": "Python", + "lines": 186, + "truncated": false, + "block": 1, + "row": 7714 + }, + { + "path": "mesa/experimental/mesa_signals/signal_types.py", + "sha256": "53f103bd6e3ec0131752d2546b6b7010b6f31290378992619f79d2e12577be0d", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 1, + "row": 6771 + }, + { + "path": "mesa/experimental/mesa_signals/signals_util.py", + "sha256": "96a5036f5008eeb4a3d2d5a3b83cb8e4b2dc7a6e64f6da9f16b2b27262b0093f", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 1, + "row": 6317 + }, + { + "path": "mesa/experimental/scenarios/__init__.py", + "sha256": "c42c269b72a6944dce4266680be39b89fa5ba4bf974da36c7cd838b55e434b8b", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 1, + "row": 5486 + }, + { + "path": "mesa/experimental/scenarios/exceptions.py", + "sha256": "2cafd2e0242414d57c260428ab4ede2c5f1bb4ae2b1ad78700e313c3f4e46a61", + "language": "Python", + "lines": 210, + "truncated": false, + "block": 1, + "row": 7916 + }, + { + "path": "mesa/experimental/scenarios/runner.py", + "sha256": "86f76c90e62ce84494b23e0c18cbe5fc84f7adecb36a4da7e3465e4406e99976", + "language": "Python", + "lines": 270, + "truncated": false, + "block": 1, + "row": 8481 + }, + { + "path": "mesa/experimental/scenarios/scenario.py", + "sha256": "3bd9ee948e8d4638e6171fbc97c22757e428ff05c86ae36a7cd7bffd9eb5914f", + "language": "Python", + "lines": 344, + "truncated": false, + "block": 1, + "row": 8780 + }, + { + "path": "mesa/experimental/scenarios/store.py", + "sha256": "5897277c2e959681d88004015143a2985e5804609133b5a0d90ba11e725ce10d", + "language": "Python", + "lines": 257, + "truncated": false, + "block": 1, + "row": 8200 + }, + { + "path": "mesa/experimental/states/__init__.py", + "sha256": "ba67d9c233b0b949ae72bf2f297a20a4f5efce819d1500cc16222e89c9c7d8b4", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 1, + "row": 5117 + }, + { + "path": "mesa/experimental/states/state.py", + "sha256": "696dcf8e1479fce2db65093a5f1c71bfe21082bb72ccdc24281d8fd8f08375b4", + "language": "Python", + "lines": 492, + "truncated": false, + "block": 1, + "row": 9312 + }, + { + "path": "mesa/mesa_logging.py", + "sha256": "42cbaf0ad456676ea58a1775c24f44fca602dffea6b19d428e994d04114e52f8", + "language": "Python", + "lines": 197, + "truncated": false, + "block": 1, + "row": 7504 + }, + { + "path": "mesa/meta_agents/__init__.py", + "sha256": "006092126f44f38ce3de653af495a0bf0db321ef2c1422e0d2633615f2a90a9e", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 1, + "row": 5154 + }, + { + "path": "mesa/meta_agents/backend.py", + "sha256": "01bf6746fa902e60835322b9e91a3a32789cab2e6cd81c75062ddd215113926e", + "language": "Python", + "lines": 153, + "truncated": false, + "block": 1, + "row": 7694 + }, + { + "path": "mesa/meta_agents/meta_agent.py", + "sha256": "c075f005d335b17cbcc05ee8250e39a7af19d7db2324adfb81acf4a836253256", + "language": "Python", + "lines": 191, + "truncated": false, + "block": 1, + "row": 7843 + }, + { + "path": "mesa/meta_agents/meta_agents_api.py", + "sha256": "ed44739d9c362986fd92a1252da2fa23469ac36a7a3e601c169004861062cbbf", + "language": "Python", + "lines": 498, + "truncated": false, + "block": 1, + "row": 9288 + }, + { + "path": "mesa/model.py", + "sha256": "6359cf9a4c8d96c8201629e806906bc544012c93df69d4614a018f4f74253b9f", + "language": "Python", + "lines": 440, + "truncated": false, + "block": 1, + "row": 9077 + }, + { + "path": "mesa/time/__init__.py", + "sha256": "d2c28095e0e18f2f95ad6dc79d6319ccac9af659fc7ad55ff2f6995501804820", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 1, + "row": 5531 + }, + { + "path": "mesa/time/events.py", + "sha256": "ec596492b2a0d11c81fbf6fd4c5f1124189fc90e20604fe4eb4437d5f8078771", + "language": "Python", + "lines": 584, + "truncated": false, + "block": 1, + "row": 9334 + }, + { + "path": "mesa/visualization/__init__.py", + "sha256": "aadd390661e84d658a76f752382eeed894a92672b4457f44abd6b13ba2b6a6a5", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 1, + "row": 5580 + }, + { + "path": "mesa/visualization/backends/__init__.py", + "sha256": "537ec5fb37d42c440e35ac1635bb07328cc4bd6556489089ca15d3551b5aa7a7", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 1, + "row": 5442 + }, + { + "path": "mesa/visualization/backends/abstract_renderer.py", + "sha256": "1672c5b263b8ed400326f5122f684e0d42b3d8c24ecaf8bab0f274a68d688a8c", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 1, + "row": 6962 + }, + { + "path": "mesa/visualization/backends/altair_backend.py", + "sha256": "959331698ba7ed5150aa4b3b4c1b4512678809ad1b9f97bb25a754bb4208e4a8", + "language": "Python", + "lines": 466, + "truncated": false, + "block": 1, + "row": 9166 + }, + { + "path": "mesa/visualization/backends/matplotlib_backend.py", + "sha256": "516d59aa3d693097cc2ee4958447028f78ce35f989f2c9550e94fc0cd55397f7", + "language": "Python", + "lines": 423, + "truncated": false, + "block": 1, + "row": 9079 + }, + { + "path": "mesa/visualization/command_console.py", + "sha256": "fac54d61d5f199ce5d890caa7c51d4072cd548ea4fddea0f71d2cbd89ea0c03e", + "language": "Python", + "lines": 482, + "truncated": false, + "block": 1, + "row": 9167 + }, + { + "path": "mesa/visualization/components/__init__.py", + "sha256": "4ef0be0d7f9fc57adc0c332c8f9547f3af512fc79269f81fb3c4d7ccb500a4cc", + "language": "Python", + "lines": 103, + "truncated": false, + "block": 1, + "row": 6978 + }, + { + "path": "mesa/visualization/components/altair_components.py", + "sha256": "08d2910567719895166dc305f72e48ef038fb3d40f2851ae3a99d4e87bc7a620", + "language": "Python", + "lines": 529, + "truncated": false, + "block": 1, + "row": 9267 + }, + { + "path": "mesa/visualization/components/matplotlib_components.py", + "sha256": "d7a52461f079f6c2d59a746f1f8285b1151d1b223fb837e3b56382bbbea44ad2", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 1, + "row": 7594 + }, + { + "path": "mesa/visualization/components/portrayal_components.py", + "sha256": "911caa05e1c6569dc52b573a76bf78c24e86687631c5af742c2bb95d24184b08", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 1, + "row": 7415 + }, + { + "path": "mesa/visualization/mpl_space_drawing.py", + "sha256": "99c8952b1bea2ac668d84dee052528c5ae862bca48f7bc7554e26f3f3d9284fd", + "language": "Python", + "lines": 857, + "truncated": false, + "block": 1, + "row": 9637 + }, + { + "path": "mesa/visualization/solara_viz.py", + "sha256": "9380dcf6bb5ea9146f517a59749a0c8ce387deb40af505b8b6fe94e196257c25", + "language": "Python", + "lines": 931, + "truncated": false, + "block": 1, + "row": 9666 + }, + { + "path": "mesa/visualization/space_drawers.py", + "sha256": "b02db1729126bd79a40f33ad7225c5cd4f32f2d722a61b5441d92f196286817b", + "language": "Python", + "lines": 852, + "truncated": false, + "block": 1, + "row": 9586 + }, + { + "path": "mesa/visualization/space_renderer.py", + "sha256": "cd684bf6aa85f8de0c0f6e6c95fa7c4dd9631f38c551d620b49c025e0bc509e5", + "language": "Python", + "lines": 488, + "truncated": false, + "block": 1, + "row": 9250 + }, + { + "path": "mesa/visualization/user_param.py", + "sha256": "0e5d963b02d82dfd297cba5a6c266d21d151c8a66b2ba42d737bad671e463d88", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 1, + "row": 6345 + }, + { + "path": "mesa/visualization/utils.py", + "sha256": "9491e044a1790472dfef64f0dd8a70ca25ae46822299a4ca43bc410b0fd1c770", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 1, + "row": 5120 + }, + { + "path": "tests/__init__.py", + "sha256": "c32f5cb4a5bc20d877dfca71a61ec0902bd8fd192cdbca73bab0c0caae7e31f5", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4967 + }, + { + "path": "tests/discrete_space/test_discrete_space.py", + "sha256": "4e5b8c87eef2c130fa0bd016049f996bea21a53304136730da350ce38ccbbd0c", + "language": "Python", + "lines": 1660, + "truncated": false, + "block": 1, + "row": 9799 + }, + { + "path": "tests/discrete_space/test_hexgrid_torus_validation.py", + "sha256": "4375a6c192a167995c4bc11598f61b4f25f4d3d557d15ffc90353e395943231f", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 1, + "row": 5772 + }, + { + "path": "tests/discrete_space/test_spatial_lookups.py", + "sha256": "07579d5eecf5eb875519460c441befeff90365d2e3fc3c7acbd9e4637764edd6", + "language": "Python", + "lines": 209, + "truncated": false, + "block": 1, + "row": 7974 + }, + { + "path": "tests/examples/test_alliance_formation_model.py", + "sha256": "4a745d95940d5b2743b5f745e57afe160e4ba8f5850c501fa78b49c48e3ffdb4", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 1, + "row": 6234 + }, + { + "path": "tests/examples/test_end_to_end_viz.sh", + "sha256": "7a60dfd31772c91095b9eb221a6db132a847756827061cbda36a7f6a126d1c63", + "language": "Shell", + "lines": 8, + "truncated": false, + "block": 1, + "row": 11118 + }, + { + "path": "tests/examples/test_examples.py", + "sha256": "7d5a1938aefc192f673111b4da6fb7dab0266f04b47fdf11d7485de731aeaf1a", + "language": "Python", + "lines": 296, + "truncated": false, + "block": 1, + "row": 8128 + }, + { + "path": "tests/examples/test_examples_viz.py", + "sha256": "07fef880ec349ee3b5b69ac0e815f72d0fb89387ed3a64db8541878290c57c46", + "language": "Python", + "lines": 374, + "truncated": false, + "block": 1, + "row": 8743 + }, + { + "path": "tests/experimental/test_actions.py", + "sha256": "327eb88c79abaf1190aa23e1916c9fd68879b5414b697178d4d1bef794165153", + "language": "Python", + "lines": 1531, + "truncated": false, + "block": 1, + "row": 9761 + }, + { + "path": "tests/experimental/test_batching.py", + "sha256": "d8b7832c20b0ee27ff64f5ba100b0753199b92cee0e855ee429f3c9ef7ce7a40", + "language": "Python", + "lines": 674, + "truncated": false, + "block": 1, + "row": 9258 + }, + { + "path": "tests/experimental/test_continuous_space.py", + "sha256": "cf97050ca9cfa5b4d5aeeb5203240cc0c14385f760f0b3cf4aa5c663437d1533", + "language": "Python", + "lines": 555, + "truncated": false, + "block": 1, + "row": 9102 + }, + { + "path": "tests/experimental/test_datarecorder.py", + "sha256": "f50c54b44bcbcecf5b9c861684efa159eb48ee04488066c31ee43f0cc3e856f3", + "language": "Python", + "lines": 1106, + "truncated": false, + "block": 1, + "row": 9634 + }, + { + "path": "tests/experimental/test_dataset.py", + "sha256": "256975fcb57e7dc4f67b18cfe3c68fd15fd8e354afc9aa7ec8a5fc83e5c2e8ce", + "language": "Python", + "lines": 535, + "truncated": false, + "block": 1, + "row": 9007 + }, + { + "path": "tests/experimental/test_mesa_signals.py", + "sha256": "511930f1b9dbf8eb7c805492afe5de21499f38c568dbdf482dc57579b34ab1d4", + "language": "Python", + "lines": 1110, + "truncated": false, + "block": 1, + "row": 9642 + }, + { + "path": "tests/experimental/test_scenarios.py", + "sha256": "79753fe1471887cc4d8a8b8e7ffe6da56ad33ae5dc45e343c4b0d116bcee5442", + "language": "Python", + "lines": 1082, + "truncated": false, + "block": 1, + "row": 9688 + }, + { + "path": "tests/experimental/test_states.py", + "sha256": "b9ffaf167bc079c9a1c89fac5414bcf7afffaaeaae96e9deb5ec09f36dd2ba12", + "language": "Python", + "lines": 441, + "truncated": false, + "block": 1, + "row": 9133 + }, + { + "path": "tests/read_requirements.py", + "sha256": "c62adad3476e28e7650abce44c4d280871748a3550f457ddb72b06c12c4139a6", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 1, + "row": 5243 + }, + { + "path": "tests/test_agent.py", + "sha256": "f71ce0ec78824b13c238710d11a60a49065c486bd982dc5900bb13ccee96d218", + "language": "Python", + "lines": 336, + "truncated": false, + "block": 1, + "row": 8393 + }, + { + "path": "tests/test_agentset.py", + "sha256": "37250f605cf02a02c67beccacded6720e992e404e3b61dfcc96776b547e34009", + "language": "Python", + "lines": 1251, + "truncated": false, + "block": 1, + "row": 9725 + }, + { + "path": "tests/test_datacollector.py", + "sha256": "8858be0c8b3886d62040c63631e1fffd809395d40162f06813ba70aa5a191881", + "language": "Python", + "lines": 935, + "truncated": false, + "block": 1, + "row": 9672 + }, + { + "path": "tests/test_import_namespace.py", + "sha256": "6e4716758f6990916081cbb65a5829b0648c09479e29ed257f1eaba245e41e5e", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 1, + "row": 6459 + }, + { + "path": "tests/test_lifespan.py", + "sha256": "97a031a8ce868dbfed3142dd2bc2ead8db70d97f9b96d2000b00c115236d098e", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 1, + "row": 6641 + }, + { + "path": "tests/test_mesa_logging.py", + "sha256": "c0786406e2a20d729b2b3be7cb0d041491ddb9e42d36cf58d7b1bdfc3cfcfaff", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 1, + "row": 6353 + }, + { + "path": "tests/test_meta_agents.py", + "sha256": "02449632dd6b494d130215c82444bd26db9f0b9266225d7cbce73b18c0e545a9", + "language": "Python", + "lines": 232, + "truncated": false, + "block": 1, + "row": 8021 + }, + { + "path": "tests/test_meta_agents_api.py", + "sha256": "cf435cacbd2dbcbf0f8ca2eb2ebcd8f900e261c4f1f1ebffa7cb9fcf0ba6a597", + "language": "Python", + "lines": 381, + "truncated": false, + "block": 1, + "row": 8892 + }, + { + "path": "tests/test_meta_agents_backend.py", + "sha256": "f15fa739d33033f27cd730372a083d66c120572140ec7e201d5019f3f72420cc", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 1, + "row": 7026 + }, + { + "path": "tests/test_model.py", + "sha256": "8b2dcda602bf42670763824ce50d6d1789face117998b35b236f53f867e5dc18", + "language": "Python", + "lines": 146, + "truncated": false, + "block": 1, + "row": 6967 + }, + { + "path": "tests/test_multi_level_meta_agents.py", + "sha256": "ef9298623ad94b45660a495e44af9b95355af1f25150b4857b953001c9cee22f", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 1, + "row": 6277 + }, + { + "path": "tests/test_schedule_run.py", + "sha256": "5849979a6736a51cb76bdd1055fc988362ad5579c7febb45ac49786563da46b5", + "language": "Python", + "lines": 275, + "truncated": false, + "block": 1, + "row": 7970 + }, + { + "path": "tests/time/test_events.py", + "sha256": "ffeadf0eda16f7d0347723468c9a8fe95c290818e715b482eaf436309e704c50", + "language": "Python", + "lines": 1118, + "truncated": false, + "block": 1, + "row": 9657 + }, + { + "path": "tests/visualization/test_backends.py", + "sha256": "a8f9740f4020577764c7189c07c1a677228142194f8e99227924c67d6147d022", + "language": "Python", + "lines": 476, + "truncated": false, + "block": 1, + "row": 9047 + }, + { + "path": "tests/visualization/test_components_matplotlib.py", + "sha256": "c12af987b74bf151096e9d7a9e3c29d1c9e01bf78553b05ba50c6dc839cb0ce1", + "language": "Python", + "lines": 284, + "truncated": false, + "block": 1, + "row": 8347 + }, + { + "path": "tests/visualization/test_portrayal_components.py", + "sha256": "d4b4ce7dd000abef42fd00b9259f1759e3166536dfa321b1ec830896b7cb72bb", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 1, + "row": 7345 + }, + { + "path": "tests/visualization/test_solara_viz.py", + "sha256": "6ce07b365eab413404b2db841ed74cbfa310dd1296903e81ada207bd38095f92", + "language": "Python", + "lines": 520, + "truncated": false, + "block": 1, + "row": 9180 + }, + { + "path": "tests/visualization/test_solara_viz_scenarios.py", + "sha256": "5ba30fa0cf7f6fe1d84a9fa3ed583b3c6fcb7f498865e77666c2ad99fd7bc832", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 1, + "row": 7497 + }, + { + "path": "tests/visualization/test_space_drawer.py", + "sha256": "d221d17bb3a5d018fea612a2077e35e779a0ab11cafb7fefa9d8473a00c9063a", + "language": "Python", + "lines": 371, + "truncated": false, + "block": 1, + "row": 8946 + }, + { + "path": "tests/visualization/test_space_renderer.py", + "sha256": "db96c807bf15ee8f7de0207ac3c49fb7efbe5befdc8bdd309de53a9977ec7c34", + "language": "Python", + "lines": 185, + "truncated": false, + "block": 1, + "row": 7648 + } + ] +} \ No newline at end of file diff --git a/manifests/1e/github.com__mlds-nus__uidd-jax.json b/manifests/1e/github.com__mlds-nus__uidd-jax.json new file mode 100644 index 0000000000000000000000000000000000000000..e9ba40cd2d06225d3b8a3fbc8104c1864f7eb7df --- /dev/null +++ b/manifests/1e/github.com__mlds-nus__uidd-jax.json @@ -0,0 +1,516 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/mlds-nus/uidd-jax", + "url": "https://github.com/MLDS-NUS/UIDD-jax", + "host": "github.com", + "commit": "dc50d42987a2164359ada6b155c6b99932504331", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "1b9e7656476b07cd90234c235f0c6a497518cceb070d5ff1fe98e0eec126e3bc", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1122 + }, + { + "path": "README.md", + "sha256": "0e56045503f6758b2f3b6872fd9a9e36665ce480e58a75b623a9c418e5b0cbad", + "language": "Text", + "lines": 159, + "truncated": false, + "block": 2, + "row": 2642 + }, + { + "path": "UIDD/__init__.py", + "sha256": "39a7a7a0616170d7b84631e6a447cdb76c43ca2f47108b2a62736b9a54d7be5c", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 2, + "row": 1654 + }, + { + "path": "UIDD/_activations.py", + "sha256": "c383c568757b53004cdf318dd080d32dd0a11452ac92a38212e1fba928bc043d", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 2, + "row": 1834 + }, + { + "path": "UIDD/_layers.py", + "sha256": "040a87cead40aeafc683b491519de5de7fcfbf72affc148958eea7cb8dc5fe8f", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 2, + "row": 1773 + }, + { + "path": "UIDD/_losses.py", + "sha256": "6ad921fc13398df64220202195cf17cb36700af5f39665a6380b3983c99e660c", + "language": "Python", + "lines": 254, + "truncated": false, + "block": 2, + "row": 2037 + }, + { + "path": "UIDD/_utils.py", + "sha256": "7045505e29d7abe2cd6f64608a5bee406419e23f4d99c69c539eb1a88a5435a0", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 2, + "row": 1642 + }, + { + "path": "UIDD/dynamics.py", + "sha256": "56704bc06ee39ae8011312f71b765173fa179b801498cc36f87ad6a3fe2b8279", + "language": "Python", + "lines": 584, + "truncated": false, + "block": 2, + "row": 2168 + }, + { + "path": "UIDD/models.py", + "sha256": "d14e001da1de563308bfec2d28153edf2a03a1c83822ec3f605c4b45449eb72a", + "language": "Python", + "lines": 873, + "truncated": false, + "block": 2, + "row": 2200 + }, + { + "path": "UIDD/trainers.py", + "sha256": "48cbc730bdfedd0e068b627c7fa20d76bf565e78e0fffcef2ea576a2a851d514", + "language": "Python", + "lines": 485, + "truncated": false, + "block": 2, + "row": 2158 + }, + { + "path": "UIDD/transformations.py", + "sha256": "f496fba9ea63be02a3d6f0b5c969205e354942eb888c355cea45004aa07dbf2b", + "language": "Python", + "lines": 181, + "truncated": false, + "block": 2, + "row": 1966 + }, + { + "path": "examples/20Dnonlinear_case/evaluate_mmd.py", + "sha256": "6aa251150e0abfec89a2a37b4201ee87238262b43c507ba0ca6d4c99b5aff993", + "language": "Python", + "lines": 556, + "truncated": false, + "block": 2, + "row": 2185 + }, + { + "path": "examples/20Dnonlinear_case/nonlinear_case.py", + "sha256": "d244913be4b7babfc2224c923913d58d935621bd7d9b2406eac836b48e1fd856", + "language": "Python", + "lines": 421, + "truncated": false, + "block": 2, + "row": 2117 + }, + { + "path": "examples/20Dnonlinear_case/onsager_reg.py", + "sha256": "620cde5cee462fd4316bea5a5c7707cac5556d70572be311a3edb1b64b34e224", + "language": "Python", + "lines": 136, + "truncated": false, + "block": 2, + "row": 1933 + }, + { + "path": "examples/20Dnonlinear_case/run_all_tests.sh", + "sha256": "68081a290e1c331f4b59dac4b68221b67bec5f7e2aa8ca0c7ace3bd6bda616e9", + "language": "Shell", + "lines": 108, + "truncated": false, + "block": 2, + "row": 2564 + }, + { + "path": "examples/20Dnonlinear_case/run_reg.sh", + "sha256": "74179344ffb97905df7a5a3f8763a13972706f4a0051626bd1e53c670131f52e", + "language": "Shell", + "lines": 123, + "truncated": false, + "block": 2, + "row": 2573 + }, + { + "path": "examples/20Dnonlinear_case/train.sh", + "sha256": "d88c72ef8be16c6e8d6540e74893fbd9874c5eb9abd7646dd22913166194f906", + "language": "Shell", + "lines": 123, + "truncated": false, + "block": 2, + "row": 2569 + }, + { + "path": "examples/SGLD-1Kaczmarz/main_Kaczmarz_scale.py", + "sha256": "a34597e9a9521fa6b127dd56dba4166d081d44ff9958f3932dd88bebc047e12c", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 2, + "row": 1818 + }, + { + "path": "examples/SGLD-1Kaczmarz/results.ipynb", + "sha256": "5e4fb64cce86e9c4962c04cdd81ee2739bc6037ff246e85ffc17bae2365cbde4", + "language": "Jupyter", + "lines": 360, + "truncated": false, + "block": 2, + "row": 1084 + }, + { + "path": "examples/SGLD-1Kaczmarz/train.sh", + "sha256": "a714c7bdc18968970bd5fa1de5887771576d622331a56e2fb3da36bf047f15a2", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 2, + "row": 2512 + }, + { + "path": "examples/SGLD-1Kaczmarz/utils_Kaczmarz.py", + "sha256": "85e1e274b917f1132c66a1724a4b99e449ad0078a18184b1c96baccd74f00b76", + "language": "Python", + "lines": 281, + "truncated": false, + "block": 2, + "row": 2051 + }, + { + "path": "examples/SGLD-2ICA/main_sgld.py", + "sha256": "837e48fc88539e8c4565c81245a0607d614e906768464dc95916e0e670998c7a", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 2, + "row": 1810 + }, + { + "path": "examples/SGLD-2ICA/results.ipynb", + "sha256": "dcaeca1abd73c9ccdef70cfbce1e0a4b12295e3e896c69087b0a9cde323e55e1", + "language": "Jupyter", + "lines": 301, + "truncated": false, + "block": 2, + "row": 1073 + }, + { + "path": "examples/SGLD-2ICA/train.sh", + "sha256": "d0eac509d92986b24d6d824e4c599e5c3309b26922322eb01073efe7bff10c9b", + "language": "Shell", + "lines": 9, + "truncated": false, + "block": 2, + "row": 2501 + }, + { + "path": "examples/SGLD-2ICA/utils_sgld.py", + "sha256": "5f35de4faab0bf78e3a9f08d08334e92864f934ffd92e28598663b2c223ccb82", + "language": "Python", + "lines": 257, + "truncated": false, + "block": 2, + "row": 2031 + }, + { + "path": "examples/linear_case/linear_case.py", + "sha256": "9c6214b94e09b902ce8103db6e09bab575b00a94667c03eea465a5a3f8c5a341", + "language": "Python", + "lines": 273, + "truncated": false, + "block": 2, + "row": 2048 + }, + { + "path": "examples/linear_case/linear_plot.ipynb", + "sha256": "e9faf7a62bb7e687087c37824f7f8f1aab45c10e3e1cb7623ac43161f2d5d08a", + "language": "Jupyter", + "lines": 544, + "truncated": false, + "block": 2, + "row": 1099 + }, + { + "path": "examples/linear_case/train.sh", + "sha256": "528d94acfd9561320b591b2617942335ff825f62e9b6e0ca3fef024e306d7391", + "language": "Shell", + "lines": 25, + "truncated": false, + "block": 2, + "row": 2543 + }, + { + "path": "examples/nonlinear_case/eval.sh", + "sha256": "942bc1f5fad1b5d464900d92c6267f611039cc20de7936045948987d1a7faac2", + "language": "Shell", + "lines": 40, + "truncated": false, + "block": 2, + "row": 2517 + }, + { + "path": "examples/nonlinear_case/evaluate_mmd.py", + "sha256": "af875406d65fc4027d8c24e1ce9e346138128b584f68bef5ebb1416464b853d8", + "language": "Python", + "lines": 554, + "truncated": false, + "block": 2, + "row": 2184 + }, + { + "path": "examples/nonlinear_case/nonlinear_case.py", + "sha256": "33a42a35d17e0b7d62a39e9918c6bacef787c16a71b435a5286f54294a7c9070", + "language": "Python", + "lines": 396, + "truncated": false, + "block": 2, + "row": 2108 + }, + { + "path": "examples/nonlinear_case/nonlinear_plot.ipynb", + "sha256": "e0639a97dc0622052f9beecccb6008fe8520f91e037fd97f31b88e669215d67d", + "language": "Jupyter", + "lines": 164, + "truncated": false, + "block": 2, + "row": 1039 + }, + { + "path": "examples/nonlinear_case/nonlinear_plot_reg.ipynb", + "sha256": "6b8723a6fcf4060036779df67b7e68ba54e31038ba833af7a5bddcbf31f69dda", + "language": "Jupyter", + "lines": 218, + "truncated": false, + "block": 2, + "row": 1057 + }, + { + "path": "examples/nonlinear_case/npz_to_xlsx.py", + "sha256": "01f1ac745c6abda1141d666ed3745db754efcc3f6982b2f1b244b3fe8627e3f9", + "language": "Python", + "lines": 300, + "truncated": false, + "block": 2, + "row": 2069 + }, + { + "path": "examples/nonlinear_case/onsager_reg.py", + "sha256": "620cde5cee462fd4316bea5a5c7707cac5556d70572be311a3edb1b64b34e224", + "language": "Python", + "lines": 136, + "truncated": false, + "block": 2, + "row": 1933 + }, + { + "path": "examples/nonlinear_case/run_reg.sh", + "sha256": "8e97e8d7864db91f24c6895b562d0a5d1312e268819f78301dd583a7435d655e", + "language": "Shell", + "lines": 109, + "truncated": false, + "block": 2, + "row": 2571 + }, + { + "path": "examples/nonlinear_case/run_uidd_sensitivity.sh", + "sha256": "c1edb8066ac7b2edfdbf1faf9d1d219a853d2cfaa63f4c6e65b674ea37d7c7a5", + "language": "Shell", + "lines": 91, + "truncated": false, + "block": 2, + "row": 2559 + }, + { + "path": "examples/nonlinear_case/test.sh", + "sha256": "cb6bc252dd4e6d2040d41236afb93c95032d3816ab9af9785c4acb6da5b27ff0", + "language": "Shell", + "lines": 4, + "truncated": false, + "block": 2, + "row": 2498 + }, + { + "path": "examples/nonlinear_case/train.sh", + "sha256": "47e08474d4524844a264cd29739f7ce24e579284a27af88b4e33da2180df832e", + "language": "Shell", + "lines": 110, + "truncated": false, + "block": 2, + "row": 2561 + }, + { + "path": "examples/nonlinear_case/uidd_sensitivity.py", + "sha256": "5768757dc6032a680bd1d088ccfb70cc9a27e9e5b0acc3cb31496f7be20e19f9", + "language": "Python", + "lines": 856, + "truncated": false, + "block": 2, + "row": 2205 + }, + { + "path": "examples/nonlinear_case/uidd_sensitivity_plot.ipynb", + "sha256": "5495f0c514594bbf99d5913c760ee23d24f453db003f8c3ccecb311cf5a64054", + "language": "Jupyter", + "lines": 383, + "truncated": false, + "block": 2, + "row": 1085 + }, + { + "path": "examples/polymer_dynamics_HD/Download.ipynb", + "sha256": "af1d29b9db59a9ae49b7031ddf414c3f5a24f9920648d731d8bf4bdf96069aee", + "language": "Jupyter", + "lines": 20, + "truncated": false, + "block": 2, + "row": 1003 + }, + { + "path": "examples/polymer_dynamics_HD/barrier_height.ipynb", + "sha256": "8689e5ceeb3bff769aa1e0bb969d6a5e7a1cbfda3628b0485417d67a652417fb", + "language": "Jupyter", + "lines": 322, + "truncated": false, + "block": 2, + "row": 1079 + }, + { + "path": "examples/polymer_dynamics_HD/main_reduced_polymerF.py", + "sha256": "43f3a813d75c1baf5b5aadf668dda916d9319c608db29cf94d6730ce734f9712", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 2, + "row": 1851 + }, + { + "path": "examples/polymer_dynamics_HD/plot_localEPR.ipynb", + "sha256": "d27730dfdc2d123f3061d299f63f0241a06b8ab775159f5f67646bc5622dd3ed", + "language": "Jupyter", + "lines": 385, + "truncated": false, + "block": 2, + "row": 1094 + }, + { + "path": "examples/polymer_dynamics_HD/plot_potential.ipynb", + "sha256": "5451dc4dd3e7d8b1bb836d7ad1830c106112c5749ff84780fff74081eeb73018", + "language": "Jupyter", + "lines": 150, + "truncated": false, + "block": 2, + "row": 1037 + }, + { + "path": "examples/polymer_dynamics_HD/plot_var.ipynb", + "sha256": "92f47bcff5cfd2072a11ef790e477d705ce7ba44cad62cd66056aa9cee36c122", + "language": "Jupyter", + "lines": 69, + "truncated": false, + "block": 2, + "row": 1010 + }, + { + "path": "examples/polymer_dynamics_HD/polt_traj.ipynb", + "sha256": "cc1af8a2e5db7cf5c85351c972eae683e3e4d8c76dbc9eae81a8e8e929ecba34", + "language": "Jupyter", + "lines": 215, + "truncated": false, + "block": 2, + "row": 1059 + }, + { + "path": "examples/polymer_dynamics_HD/polymer_exp_val/EPR_30V.ipynb", + "sha256": "e7d526e7a509e45e667ef0b677421d3a9b374b0dde43df6a84a004c46c2149e7", + "language": "Jupyter", + "lines": 330, + "truncated": false, + "block": 2, + "row": 1080 + }, + { + "path": "examples/polymer_dynamics_HD/polymer_exp_val/EPR_60V.ipynb", + "sha256": "a092a8a2ec8ff31b7e0abc118b0474bbd5d653919e7e2cfa5589d432b89023f9", + "language": "Jupyter", + "lines": 338, + "truncated": false, + "block": 2, + "row": 1083 + }, + { + "path": "examples/polymer_dynamics_HD/polymer_exp_val/plot_polymer.ipynb", + "sha256": "5d42e0a0a274a80df10d6660d7cfb28f4ae9773fa72500eacadba72a8641810a", + "language": "Jupyter", + "lines": 67, + "truncated": false, + "block": 2, + "row": 1009 + }, + { + "path": "examples/polymer_dynamics_HD/results.ipynb", + "sha256": "6cef582967115a2785d2bc6dd1f6be86d83abbe87b8123bfc4f98e32dfb5c43b", + "language": "Jupyter", + "lines": 149, + "truncated": false, + "block": 2, + "row": 1038 + }, + { + "path": "examples/polymer_dynamics_HD/train.sh", + "sha256": "e2045a36ccd06bddfc10a8c6123211e30e3302db89e75d39cd61713f1984e128", + "language": "Shell", + "lines": 9, + "truncated": false, + "block": 2, + "row": 2504 + }, + { + "path": "examples/polymer_dynamics_HD/utils_reduced_polymer.py", + "sha256": "a187ea16ee8aaeb61a3fc44310bcf0b58c6e41af4556c17a88dbce1ce5d8730e", + "language": "Python", + "lines": 338, + "truncated": false, + "block": 2, + "row": 2076 + }, + { + "path": "examples/utils/data.py", + "sha256": "9fa0ecd85108e927327f895f9f98443927b715c51101629f0476935f581cc6c1", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 2, + "row": 1788 + }, + { + "path": "examples/utils/sde.py", + "sha256": "f3c5b3237097eab9bb3f7b9d7a1906c9228e56b286e8f9efbf80cddb209be969", + "language": "Python", + "lines": 127, + "truncated": false, + "block": 2, + "row": 1875 + } + ] +} \ No newline at end of file diff --git a/manifests/20/github.com__wheelocklab__networklevelanalysis.json b/manifests/20/github.com__wheelocklab__networklevelanalysis.json new file mode 100644 index 0000000000000000000000000000000000000000..97ee907524a0b76efd1507a1b0a8e1a9b5dc5fbe --- /dev/null +++ b/manifests/20/github.com__wheelocklab__networklevelanalysis.json @@ -0,0 +1,1785 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/wheelocklab/networklevelanalysis", + "url": "https://github.com/WheelockLab/NetworkLevelAnalysis/releases/tag/v1.0.0", + "host": "github.com", + "commit": "37fe497199d9af89c5b2a32dedd560f4b520af13", + "license": "MIT", + "license_confirmed_by": "license file LICENSE.txt", + "redistribution": "yes", + "files": [ + { + "path": "+nla/+edge/+inputHelpers/SandwichEstimatorInput.m", + "sha256": "60e89b7cc6ef0c66bcd4fff0bea110bc56e2521cee394c67aca93deeb4b98b19", + "language": "MATLAB", + "lines": 75, + "truncated": false, + "block": 1, + "row": 3228 + }, + { + "path": "+nla/+edge/+permutationMethods/+tree/PermutationNode.m", + "sha256": "3f83f26ab425962d3c4bc1c603c645a6654fe11fe387bb26945bec6bae3a6a5a", + "language": "MATLAB", + "lines": 68, + "truncated": false, + "block": 1, + "row": 3510 + }, + { + "path": "+nla/+edge/+permutationMethods/+tree/PermutationTree.m", + "sha256": "8e18cde18824a31b7aa705c11678707b8670c8f240a1e0fdf10d74cfe59b0bff", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 1, + "row": 2951 + }, + { + "path": "+nla/+edge/+permutationMethods/Base.m", + "sha256": "8d74c16c232c273803a84fed80461bcdcfbc7578332d9391912ecc4f99258abc", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 1, + "row": 2281 + }, + { + "path": "+nla/+edge/+permutationMethods/BehaviorVec.m", + "sha256": "40bc119e798f02b3a1cd8441f73f19f68d27ccc66db2dd0e80a3ca4a324f370d", + "language": "MATLAB", + "lines": 9, + "truncated": false, + "block": 1, + "row": 2433 + }, + { + "path": "+nla/+edge/+permutationMethods/FCWildBootstrap.m", + "sha256": "ce9bcb18f0d8781757520b676c6913c744d140ab22377c97f4c611f673ec31d5", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 1, + "row": 2685 + }, + { + "path": "+nla/+edge/+permutationMethods/MultiLevel.m", + "sha256": "558276fc32fbe4e65567ae80c075fd1a51547990fd15999e2a44f81238ef8ccc", + "language": "MATLAB", + "lines": 81, + "truncated": false, + "block": 1, + "row": 3465 + }, + { + "path": "+nla/+edge/+permutationMethods/None.m", + "sha256": "2cc3e08819a161c8d0b1df2f975de9e4fff60d15e328b1042bfa782d0df43a8c", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 1, + "row": 2334 + }, + { + "path": "+nla/+edge/+result/Base.m", + "sha256": "76abef0641297cb9fbac378a110c0db6334ad301b33464e9fedd8f6557f82ac6", + "language": "MATLAB", + "lines": 85, + "truncated": false, + "block": 1, + "row": 3479 + }, + { + "path": "+nla/+edge/+result/MultiContrast.m", + "sha256": "945b6f061d18c52b99f6ee56de5b155511fa2a4f5e3faa1c72859462a9252a20", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 1, + "row": 3023 + }, + { + "path": "+nla/+edge/+result/PermBase.m", + "sha256": "809432cfb5dd16b8310a111ab1e1bb2ff67db0c0f6453b2547f32671d2538c17", + "language": "MATLAB", + "lines": 105, + "truncated": false, + "block": 1, + "row": 3543 + }, + { + "path": "+nla/+edge/+result/Precalculated.m", + "sha256": "2f863c638f141324b01eccb96bbd756ea32cb712376434b6b9bd193c3741972f", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 1, + "row": 2456 + }, + { + "path": "+nla/+edge/+result/SandwichEstimator.m", + "sha256": "299e8848a365689ea2fd6290ae5675bedb37629f0a3fe1ffbef549e6438a66e9", + "language": "MATLAB", + "lines": 103, + "truncated": false, + "block": 1, + "row": 3555 + }, + { + "path": "+nla/+edge/+result/WelchT.m", + "sha256": "96ea651139b5969464ac3ac6ec0f7a859c65686e61e52c4bb7c71632321d9784", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 1, + "row": 2588 + }, + { + "path": "+nla/+edge/+test/KendallB.m", + "sha256": "537524f971239139f1e89a8aeb97fc3b81d591865cd3cd86e69f7eb616eaa2e7", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 1, + "row": 2549 + }, + { + "path": "+nla/+edge/+test/OrdinaryLeastSquares.m", + "sha256": "e00d7815f7ac7db5bbab14fffb75e5326b4b33d7840853e0aba36fb9620c927b", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 1, + "row": 2630 + }, + { + "path": "+nla/+edge/+test/PairedT.m", + "sha256": "9c263b3cfa3f37773269f5f2ef206a65d3c85294ac41e796885659b9b9c582d5", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 1, + "row": 3240 + }, + { + "path": "+nla/+edge/+test/Pearson.m", + "sha256": "ea778963c6e3e224c4d2ac0cfbacf5de984ff2dda28550431207b012bbc725a2", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 1, + "row": 2562 + }, + { + "path": "+nla/+edge/+test/Precalculated.m", + "sha256": "3c1bb4114c982b7075aa227ede057f171b7d0d3c898f85714f71b114debc273c", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 1, + "row": 3199 + }, + { + "path": "+nla/+edge/+test/SandwichEstimator.m", + "sha256": "0d2ff850aa68530ce66376df9c7b01d53468aa893afd95d4529e40279350ce17", + "language": "MATLAB", + "lines": 255, + "truncated": false, + "block": 1, + "row": 4029 + }, + { + "path": "+nla/+edge/+test/Spearman.m", + "sha256": "409f3b4ad5fc0ea51e76b2c49809dc0b623b935c5e26f602b6633e97a7e9063b", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 1, + "row": 2567 + }, + { + "path": "+nla/+edge/+test/SpearmanEstimator.m", + "sha256": "e89b83198b103ff222304833a784312dbe053c360ea2645d4cb8a814ae594338", + "language": "MATLAB", + "lines": 83, + "truncated": false, + "block": 1, + "row": 3516 + }, + { + "path": "+nla/+edge/+test/WelchT.m", + "sha256": "1936bba79365c03dee80897faa3f1735b8842956379b807319611f711cbc29fa", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 1, + "row": 3342 + }, + { + "path": "+nla/+edge/BaseTest.m", + "sha256": "b12ba64a36b88475e846a0aa2b3175cbd144d1cdde93a460db308a0223fbae15", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 1, + "row": 2957 + }, + { + "path": "+nla/+edge/ContrastInput.m", + "sha256": "c468ca62e19929cf31eb2eef5ab6cdc90ab5bf61baee52c02b127268cb68eccb", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 1, + "row": 2629 + }, + { + "path": "+nla/+edge/unittests/EdgeResultsTest.m", + "sha256": "17317645539ff970f9a9de5636663a0150c35936b24bb10da1ec83de3995554e", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 1, + "row": 2790 + }, + { + "path": "+nla/+edge/unittests/EdgeTestsTest.m", + "sha256": "75cee194011bc24e3b47afcd0fd4829179099af9c314feec6e863765ed6173c1", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 1, + "row": 3136 + }, + { + "path": "+nla/+edge/unittests/MultiLevelPermutationTest.m", + "sha256": "0e9b5de927c9be138acd23fb5188115619b4435cfe57bd42c46e29fbd31a6ab7", + "language": "MATLAB", + "lines": 98, + "truncated": false, + "block": 1, + "row": 3650 + }, + { + "path": "+nla/+edge/unittests/PermutationMethodsTest.m", + "sha256": "37c17696292490ab9d2423fe23b33571daeb7e57f91db63d8efa334257ea646d", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 1, + "row": 2801 + }, + { + "path": "+nla/+gfx/+brain/BrainPlot.m", + "sha256": "12b464eeeb402ab488342c17252268cc7176998fe44ee110085ed750145405bc", + "language": "MATLAB", + "lines": 533, + "truncated": false, + "block": 1, + "row": 4295 + }, + { + "path": "+nla/+gfx/+chord/ChordPlot.m", + "sha256": "0e341b7004be9e42ed396020afd77f47e7a8d795a301558079e530783bc2adb6", + "language": "MATLAB", + "lines": 503, + "truncated": false, + "block": 1, + "row": 4282 + }, + { + "path": "+nla/+gfx/+plotfunctions/getDefaultPlotSettings.m", + "sha256": "ae3c76e10203dc505aa8eda4525ca217a704d3e366aa1b03a739d9b7c326b67a", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 1, + "row": 2534 + }, + { + "path": "+nla/+gfx/+plotfunctions/plotNetTriMatrix.m", + "sha256": "f4f43652d980807fca77014f3d745ad1dd0fa1aadb1a9ab9e125c5c19a0385cb", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 1, + "row": 2926 + }, + { + "path": "+nla/+gfx/+plotfunctions/plotScriptExample.m", + "sha256": "78449b534ace56f0bf288ce4c1d9f6136a5b0802a4cdceff99df3a2548741fd3", + "language": "MATLAB", + "lines": 68, + "truncated": false, + "block": 1, + "row": 3186 + }, + { + "path": "+nla/+gfx/+plots/DiagnosticPlot.m", + "sha256": "d4a6e1653ee164d29cbd1c640ad64a57681df9ba54bef21b6fb600c392e20640", + "language": "MATLAB", + "lines": 72, + "truncated": false, + "block": 1, + "row": 3452 + }, + { + "path": "+nla/+gfx/+plots/MatrixPlot.m", + "sha256": "7ee34c76289c59a06a2ff710c495941c5cb0fe1c0bb8bf7e3f6dc66e878e2ac8", + "language": "MATLAB", + "lines": 723, + "truncated": false, + "block": 1, + "row": 4313 + }, + { + "path": "+nla/+gfx/BrainColorMode.m", + "sha256": "97d98f567012b67fcd26dc9acbdfa5d61c0229b249db2e5d30fa69ae28ae3600", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 1, + "row": 2275 + }, + { + "path": "+nla/+gfx/EdgeChordPlotMethod.m", + "sha256": "527251e09203f4904025c2cf4719c34017b99d56065bac28221835dbfdf98961", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 1, + "row": 2286 + }, + { + "path": "+nla/+gfx/FigMargins.m", + "sha256": "f204696240b7493d557f3f1d9b7d6ae6f7bc91896a69b0a06158004bf39c3f52", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 1, + "row": 2255 + }, + { + "path": "+nla/+gfx/FigSize.m", + "sha256": "d75adc4a35b24fd120e407237616612d1c863c1bd5ea5ad0485d760bd7dadfd1", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 1, + "row": 2251 + }, + { + "path": "+nla/+gfx/MatrixType.m", + "sha256": "257ade8eb6876be9138ac6ef5b9e19cd7769190b06d217edbdc1710abe6a67d4", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 1, + "row": 2256 + }, + { + "path": "+nla/+gfx/MeshType.m", + "sha256": "fac7bab679c2b3a2266c75fd19e0215ab4803b3130220541bbc1061efa923664", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 1, + "row": 2253 + }, + { + "path": "+nla/+gfx/PlotValue.m", + "sha256": "2eab3847dbb6a32f5646e34e31bbee30a148731668042f1fa888544887021ff7", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 1, + "row": 2254 + }, + { + "path": "+nla/+gfx/ProbPlotMethod.m", + "sha256": "b7414a449015a213a2fb79bfd58ec903d6447b3ec06fd9e504307a1aad7d985c", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 1, + "row": 2269 + }, + { + "path": "+nla/+gfx/SigType.m", + "sha256": "5121448334479df63d4d140c8b6e4b60d2584b3b2fbfccb1bd081a7c6ee9809e", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 1, + "row": 2270 + }, + { + "path": "+nla/+gfx/ViewPos.m", + "sha256": "dc3c1be662187ca4a7cd7d213da171cb9adbb186e713b8b72c75b18047c82ebd", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 1, + "row": 2274 + }, + { + "path": "+nla/+gfx/anatToMesh.m", + "sha256": "46eaf2a95454babb57d3cbffc412f1406b5e3b2e9395b19589d4229591a85246", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 1, + "row": 3068 + }, + { + "path": "+nla/+gfx/angleFrom.m", + "sha256": "c881e9a315e98c95f9f8eb84897b442838e117be7d7684853cf09f47ea53cdd1", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 1, + "row": 2431 + }, + { + "path": "+nla/+gfx/colorChunk.m", + "sha256": "bdd744eb75a122c19500e448aff3229c088f8524fb3fb75d4e00c6e78930e597", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 1, + "row": 2308 + }, + { + "path": "+nla/+gfx/colorSelector.m", + "sha256": "27d9d9c1e882147ead64741221e9def00c31c4f6a21af3810ecea3d866d58c16", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 1, + "row": 3219 + }, + { + "path": "+nla/+gfx/createFigure.m", + "sha256": "5e0ccde4048f1f6195d36c9d001eb446290bb2c9e199f1f1506033e212808fe4", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 1, + "row": 2912 + }, + { + "path": "+nla/+gfx/drawBrainVis.m", + "sha256": "15fa731a38447bcdccce5d051056786990de4c71e5596f38bc177e1c262740b6", + "language": "MATLAB", + "lines": 291, + "truncated": false, + "block": 1, + "row": 4137 + }, + { + "path": "+nla/+gfx/drawChord.m", + "sha256": "7c8ebdb85eabbbf01ff7c05e9cc459ae59e2bbff2141afe4dd61b6012b300b44", + "language": "MATLAB", + "lines": 261, + "truncated": false, + "block": 1, + "row": 4096 + }, + { + "path": "+nla/+gfx/drawConvergenceMap.m", + "sha256": "0c7c9e95147064cc155193b295f168b00e99a3183a7682faf6e3a315136f97df", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 1, + "row": 3258 + }, + { + "path": "+nla/+gfx/drawCortex.m", + "sha256": "5659f5bf8e81402ddc5c7f4bf6d458404a181a28fd3114fc11b8491f2c9ed680", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 1, + "row": 3289 + }, + { + "path": "+nla/+gfx/drawCortexHemi.m", + "sha256": "0be306523c1c6a33edf17421f9237c8db23dc692e5315de3fd28a32943829afe", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 1, + "row": 2612 + }, + { + "path": "+nla/+gfx/drawDesignMtx.m", + "sha256": "7e4d5eb5588b593c968ae11492af7340259df7bec76ef61c728685e94bb1e10b", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 1, + "row": 3004 + }, + { + "path": "+nla/+gfx/drawLine.m", + "sha256": "e8628b64850edae0c8a8a8c5317a307a2de815100588c630f82b5d00f79ad999", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 1, + "row": 2409 + }, + { + "path": "+nla/+gfx/drawMatrixOrg.m", + "sha256": "18cde275afadda9ce06bf326534752c1f1a524b01458964227616e0e31eb15cf", + "language": "MATLAB", + "lines": 364, + "truncated": false, + "block": 1, + "row": 4134 + }, + { + "path": "+nla/+gfx/drawNetworkROIs.m", + "sha256": "821a11bc570ff84e030e59f81b6c3d279dca993076b36ccb58a8d624ce93abf0", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 1, + "row": 2996 + }, + { + "path": "+nla/+gfx/drawROIsOnCortex.m", + "sha256": "b7e54804e4292454dc31c39b1d4baf94ec6263ba881f8e00161bdd96406d3906", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 1, + "row": 3461 + }, + { + "path": "+nla/+gfx/drawSphere.m", + "sha256": "b743332f9bc56e926675bcfbf85684a9bd8953e87493417062d00abe84d4e72b", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 1, + "row": 2538 + }, + { + "path": "+nla/+gfx/findCircleFromTwoTangents.m", + "sha256": "8078ed1595da20d9f79840fa550eb72bfc7730e1d4838240fa6dce5372c47e1e", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 1, + "row": 2765 + }, + { + "path": "+nla/+gfx/findOriginXFromTwoTangents.m", + "sha256": "0c30d9c82235b93a86d917a8ff9cfa499734b9ce342565fd3496d297ac11691c", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 1, + "row": 2522 + }, + { + "path": "+nla/+gfx/genArcSegment.m", + "sha256": "8772754539b0797853b4c6869bfc4f8c2d2cdfd323fa783649c7477af5b5d235", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 1, + "row": 2901 + }, + { + "path": "+nla/+gfx/genArcSegmentHandlePoorlyDefined.m", + "sha256": "b537289e7bb9bd6741c516f41b9d68e0f68778ee4af192f11e152d92cdf9e860", + "language": "MATLAB", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2807 + }, + { + "path": "+nla/+gfx/hideAxes.m", + "sha256": "cc8f314b7a36af9ffadb0516a7743a2c0ddb1406e0e5478389b4238765d426ae", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 1, + "row": 2379 + }, + { + "path": "+nla/+gfx/moveFigToParentUILocation.m", + "sha256": "d8e1bebfef44fd0ea03513ec55f12dabc1697b8f790f56e77af39806354940cd", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 1, + "row": 2712 + }, + { + "path": "+nla/+gfx/pointDist.m", + "sha256": "47a06be203340fe761ce59663832a60f5fda96969bd07c0e8e326e0475cd9c26", + "language": "MATLAB", + "lines": 9, + "truncated": false, + "block": 1, + "row": 2390 + }, + { + "path": "+nla/+gfx/rgb2hex.m", + "sha256": "ef96df666214743ea58c5b554ff5f2cb39a33568a47f0daa0edd8fbff8f10397", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 1, + "row": 2622 + }, + { + "path": "+nla/+gfx/scaleSelector.m", + "sha256": "ab5a168f1516ab14f70cff20d0fed4ce19e85ac3870b244dddf0eb62f3717560", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 1, + "row": 3046 + }, + { + "path": "+nla/+gfx/setTitle.m", + "sha256": "53a585390fcc61d330ffcc9e2ca5b7e290b3df616b58ef0ff2944cbe298d1ddd", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 1, + "row": 2467 + }, + { + "path": "+nla/+gfx/unittest/ChordPlotTest.m", + "sha256": "c73a832109851213eabf25cbb8bbcc47dbdf9bce7de58a91046a176d0b964e88", + "language": "MATLAB", + "lines": 139, + "truncated": false, + "block": 1, + "row": 3804 + }, + { + "path": "+nla/+gfx/valToColor.m", + "sha256": "31a933976263d0b643449642cb47770298906441e412d26b8f5901cbeb57b8d0", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 1, + "row": 2352 + }, + { + "path": "+nla/+helpers/+file/findMatching.m", + "sha256": "c4b948cc01cf29614a9b14540daa870b294ae5312b4d8a4736067fc3866b8720", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 1, + "row": 2381 + }, + { + "path": "+nla/+helpers/+file/hash.m", + "sha256": "eabdd12abdb5838c70e2c0823460520a1482d1d78d82ef96770386043f39c651", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 1, + "row": 2299 + }, + { + "path": "+nla/+helpers/+git/commitString.m", + "sha256": "ed583865faf2bef950e57b81eef133bd155503f1bc1bb9c4c461f91ae3688310", + "language": "MATLAB", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2550 + }, + { + "path": "+nla/+helpers/+stdError/AbstractSwEStdErrStrategy.m", + "sha256": "fc386ef9c5e6d9323ea669f880efdbfc67f0bf5b5fb9ffee2c39bd6247d41a8d", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 1, + "row": 2355 + }, + { + "path": "+nla/+helpers/+stdError/GroupHeteroskedastic_FAST.m", + "sha256": "935d9f22a369d39b12255c90542f5753903c951ca336fc544764bb8f8b7656af", + "language": "MATLAB", + "lines": 70, + "truncated": false, + "block": 1, + "row": 3373 + }, + { + "path": "+nla/+helpers/+stdError/Guillaume.m", + "sha256": "e9f7dc247dc2e9a88733c1c6dab7bfe6a192298d8078855a6b5e0af8cfff17c7", + "language": "MATLAB", + "lines": 300, + "truncated": false, + "block": 1, + "row": 4128 + }, + { + "path": "+nla/+helpers/+stdError/Heteroskedastic.m", + "sha256": "8e87028e9d2ff924a864bcc152503396bd7c1ee316438e141b4c97ce9525ded1", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 1, + "row": 3029 + }, + { + "path": "+nla/+helpers/+stdError/Heteroskedastic_FAST.m", + "sha256": "b72a415f106e506e3f690a25f86fbbb8992f95c96b9b7ec1b63ae9ea4158603e", + "language": "MATLAB", + "lines": 62, + "truncated": false, + "block": 1, + "row": 3274 + }, + { + "path": "+nla/+helpers/+stdError/Homoskedastic.m", + "sha256": "cdfcbd55fa9975f865339f30e5b23138d5bd5c7aab1d612e02109d1618ca1aaa", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 1, + "row": 2798 + }, + { + "path": "+nla/+helpers/+stdError/SwEStdErrorInput.m", + "sha256": "09dc8e836266629ad88e15608612ad41f6599e1f8f05ea1f376718f860f3b6f2", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 1, + "row": 2375 + }, + { + "path": "+nla/+helpers/+stdError/UnconstrainedBlocks.m", + "sha256": "100a13bc53903e4185451a912612c2a57fd48f0e39e4741c9019b2289d58a7d7", + "language": "MATLAB", + "lines": 103, + "truncated": false, + "block": 1, + "row": 3495 + }, + { + "path": "+nla/+helpers/abs_ge.m", + "sha256": "9fd6e626f24d8009c89f32657cf2a1b51803cf725bd4c16cbef7ba97f8b5166a", + "language": "MATLAB", + "lines": 4, + "truncated": false, + "block": 1, + "row": 2248 + }, + { + "path": "+nla/+helpers/classToStructRecursive.m", + "sha256": "764e46e249fd985a26054b4abfd21fd6c77a794c7194256718978b3b7666407b", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 1, + "row": 2708 + }, + { + "path": "+nla/+helpers/euclidianDistanceROIs.m", + "sha256": "f1711a3e29acae0855fbb3677de04abcef536328c820b7485094a26635d984d5", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 1, + "row": 2515 + }, + { + "path": "+nla/+helpers/firstInstanceOfClass.m", + "sha256": "ab7862ae27ff3189d2fd71573160a3f2dac9c9ba5be64f73d10aa837f8303266", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 1, + "row": 2384 + }, + { + "path": "+nla/+helpers/humanReadableList.m", + "sha256": "98273d7bcced68f9457c00277dbbce8a2bfe3297a6afe95989484a309db37af9", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 1, + "row": 2427 + }, + { + "path": "+nla/+helpers/mergeStruct.m", + "sha256": "11f9194a3377b9ab9015f03077000a996aad280b286552f995a214c996e92eef", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 1, + "row": 2354 + }, + { + "path": "+nla/+helpers/mixColors.m", + "sha256": "bdc5b50f11ea4cb664ae8ea950e6ff477f6d75b0d85d23aec71840e6d40245af", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 1, + "row": 2298 + }, + { + "path": "+nla/+helpers/normClipped.m", + "sha256": "3bf786342821fa14b6c4b9665074c0942aeb277e4cb2ddf5a9bca974f7bafe83", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 1, + "row": 2342 + }, + { + "path": "+nla/+helpers/permuteVector.m", + "sha256": "715f7f3e7c173b05121cf633b9f2f763a5a2fb5b70c96437bc649277d268cca4", + "language": "MATLAB", + "lines": 4, + "truncated": false, + "block": 1, + "row": 2265 + }, + { + "path": "+nla/+helpers/reshapeFlatFcIntoSquares.m", + "sha256": "de634af82fc89f5c62dacac52e2116ecf808767aa408ef796768ab1cdab29d06", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 1, + "row": 2804 + }, + { + "path": "+nla/+helpers/rotationMatrix.m", + "sha256": "b816d3d25996d3f18ae9f7bef83e4b8cafdf13f9021f070d01bccea24eccb362", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 1, + "row": 2585 + }, + { + "path": "+nla/+helpers/triNum.m", + "sha256": "03aa85f5655176e7717f1dbf836f71a4624f0026fd87e302656ab16702cc5918", + "language": "MATLAB", + "lines": 4, + "truncated": false, + "block": 1, + "row": 2285 + }, + { + "path": "+nla/+helpers/triNumInv.m", + "sha256": "85b2296d3d1133102261b58b1c0fab36fc62835fc6231ed98ed75c1fe009fba8", + "language": "MATLAB", + "lines": 4, + "truncated": false, + "block": 1, + "row": 2293 + }, + { + "path": "+nla/+helpers/wildBootstrap.m", + "sha256": "73ccc6be62ca76323d71117552fcdf6e9d4ee38bb761c1424c1b880da046103e", + "language": "MATLAB", + "lines": 66, + "truncated": false, + "block": 1, + "row": 3176 + }, + { + "path": "+nla/+inputField/Behavior.m", + "sha256": "e388b2ffa2d93bb80efef7a4e7ef01116c7a3a942bd5ef7f193a565bcd279d27", + "language": "MATLAB", + "lines": 505, + "truncated": false, + "block": 1, + "row": 4261 + }, + { + "path": "+nla/+inputField/Button.m", + "sha256": "d6b985dfa0513e5ae82d4cda44f8619d3169ec1e8d83380db0606b1cb1d1dec5", + "language": "MATLAB", + "lines": 56, + "truncated": false, + "block": 1, + "row": 2960 + }, + { + "path": "+nla/+inputField/CheckBox.m", + "sha256": "4106690107823384bc677a17b265d33c283285b1a92aed6d9b9d14b7df2ef99b", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 1, + "row": 2977 + }, + { + "path": "+nla/+inputField/CovariatesEnabled.m", + "sha256": "8d9778104408d6159cd25d910c0d39e4a6392ed86feba6ca46c2be7078405506", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 1, + "row": 2261 + }, + { + "path": "+nla/+inputField/DimensionType.m", + "sha256": "965764aaf605169b4942fec4162c9a631045d88e3274b372c7e86701cfe7aa30", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 1, + "row": 2291 + }, + { + "path": "+nla/+inputField/EdgeLevelMatrix.m", + "sha256": "df9ae9533f614e6ba1c513a71a0d6a0c8bb3562fc498cc5f1219f650a80c0517", + "language": "MATLAB", + "lines": 202, + "truncated": false, + "block": 1, + "row": 3922 + }, + { + "path": "+nla/+inputField/InputField.m", + "sha256": "5303b63e9fee848cd0cc115fd76f2894c0043b5d76b10c42fa1876b197bff068", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 1, + "row": 2596 + }, + { + "path": "+nla/+inputField/Integer.m", + "sha256": "ec6f708cb913d8743cf878aca65993e14f07e7a390420c51293107f91077e783", + "language": "MATLAB", + "lines": 9, + "truncated": false, + "block": 1, + "row": 2363 + }, + { + "path": "+nla/+inputField/LABEL_GAP.m", + "sha256": "163d7794039bc14dc999ce412f09cc3d29214a347c8b1cdcbaaaabdebe72db18", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 1, + "row": 2320 + }, + { + "path": "+nla/+inputField/LABEL_H.m", + "sha256": "b6be30bafbe4490045d5f0d9daf9bdb81a321f277018ed08c31e5beaaf560382", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 1, + "row": 2321 + }, + { + "path": "+nla/+inputField/Label.m", + "sha256": "0726d7bf1b8f8b7e87b70de3dec06fbb71d46debe7dfafe98c1bccbe89cb9e54", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 1, + "row": 2848 + }, + { + "path": "+nla/+inputField/NetworkAtlas.m", + "sha256": "d31df15174d778ed7445e8a5ebfcab21f37e8c0cd3f671d316c910fae03e8d5f", + "language": "MATLAB", + "lines": 222, + "truncated": false, + "block": 1, + "row": 4000 + }, + { + "path": "+nla/+inputField/NetworkAtlasFuncConn.m", + "sha256": "2d700899e38811ccc340f77c77c1d7b9385790969dd1be2f2d686f220bf5cfa8", + "language": "MATLAB", + "lines": 406, + "truncated": false, + "block": 1, + "row": 4212 + }, + { + "path": "+nla/+inputField/Number.m", + "sha256": "6a78c13ff151f5fe3d9790d21e3396f1980a195fddf2f3e31df8883214c309e7", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 1, + "row": 3164 + }, + { + "path": "+nla/+inputField/NumberWithoutDefault.m", + "sha256": "113c0c5061240cd514faea0b81774e9407f5416ca6cd3d73030cc9388cb98a31", + "language": "MATLAB", + "lines": 82, + "truncated": false, + "block": 1, + "row": 3206 + }, + { + "path": "+nla/+inputField/OrdinaryLeastSquares.m", + "sha256": "d809b8e8795bd9d31c3200f05e295cab1a3a62ff0f9efe11afcd3d981bf115d5", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 1, + "row": 3105 + }, + { + "path": "+nla/+inputField/PullDown.m", + "sha256": "c7f21bbb3aecea1bc5c3672ee80d2816db2e11cc1fc30a604e30a5d5b389ff3b", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 1, + "row": 3295 + }, + { + "path": "+nla/+inputField/SandwichEstimator.m", + "sha256": "726540add66ca9d72420b8435cdad80dbce4c2415da6bcc3cec964f2a4ba6d9f", + "language": "MATLAB", + "lines": 99, + "truncated": false, + "block": 1, + "row": 3367 + }, + { + "path": "+nla/+inputField/String.m", + "sha256": "6ead9aa841e991efc1a0376efd2b29e7d4910ea348ecc3749d5df7813adfaf6b", + "language": "MATLAB", + "lines": 70, + "truncated": false, + "block": 1, + "row": 3113 + }, + { + "path": "+nla/+inputField/reduce.m", + "sha256": "7dfaf8e4079ddb8f70fde4fadd256370685d8dea111b7e845605f48ce23cfe4f", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 1, + "row": 2560 + }, + { + "path": "+nla/+inputField/widthOfString.m", + "sha256": "8f1a910171b40c44b6e90ba4b726ddd15d1d134f10eb9436853177dee4526cf8", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 1, + "row": 2802 + }, + { + "path": "+nla/+interfaces/IndexGroup.m", + "sha256": "951676f96e08311299e5930c5181e02253debe3587e11f1ef9820d94b39a8e69", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 1, + "row": 2324 + }, + { + "path": "+nla/+lib/bonferroni_holm.m", + "sha256": "439e961cc424fbe63a84c34a64dfc235da5defca3ead8bebb850b6ec5acd2807", + "language": "MATLAB", + "lines": 81, + "truncated": false, + "block": 1, + "row": 3551 + }, + { + "path": "+nla/+lib/calc_correlationdist.m", + "sha256": "580efcbf6fdf56fef1ae457864beebb3c2f51c4a9757c3703887030f5ca6c216", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 1, + "row": 2458 + }, + { + "path": "+nla/+lib/fdr_bh.m", + "sha256": "cabe89ef1fff45320c4d7e773eed80020c56f571f952064f3cc357dd15aec667", + "language": "MATLAB", + "lines": 211, + "truncated": false, + "block": 1, + "row": 3969 + }, + { + "path": "+nla/+lib/silhouette_mod.m", + "sha256": "ac105905a72e5454990abf96bc5f40a09d8d6e2bc002df56de1ccbb2b450d111", + "language": "MATLAB", + "lines": 119, + "truncated": false, + "block": 1, + "row": 3517 + }, + { + "path": "+nla/+logging/saveErrorObjInTimestampedMatfile.m", + "sha256": "c3dee86947452a0ec3b31bfb387840891f15f7d0f92195c2a62752cd1890975b", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 1, + "row": 2391 + }, + { + "path": "+nla/+mex/+src/kendallTauB.c", + "sha256": "101e2f16b455601ba158d72a649ac6cb8239ef8021ad581f79fa0707f15a47ce", + "language": "C", + "lines": 381, + "truncated": false, + "block": 1, + "row": 147 + }, + { + "path": "+nla/+mex/run.m", + "sha256": "366919f1ac08e03587b9133a283e023fd60b5f71dea8ba2822acfeb6dc7f37f6", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 1, + "row": 3208 + }, + { + "path": "+nla/+mex/usageError.m", + "sha256": "effb62efd879344fdbf1468c967a93b7e6fb2e4dace29b699cd3c2e6f9c91666", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 1, + "row": 2344 + }, + { + "path": "+nla/+net/+mcc/Base.m", + "sha256": "119db43755f6b84ca6fc4f00c06e0d81043e2dd0a714e6e4a11945d6ef36008f", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 1, + "row": 2327 + }, + { + "path": "+nla/+net/+mcc/BenjaminiHochberg.m", + "sha256": "c79699dcb1ba0d7ff2975d87f02a40ad45d031e12d92647ca3f3c0d23dd655f0", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 1, + "row": 2521 + }, + { + "path": "+nla/+net/+mcc/BenjaminiYekutieli.m", + "sha256": "384e02ef84e563e2a2233e43136ffb21bad768baf2357b1ed3bbaa38ea3113fc", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 1, + "row": 2523 + }, + { + "path": "+nla/+net/+mcc/Bonferroni.m", + "sha256": "da81bc43cee3ca881885611bdadea84c45b1a43f5cfc32d5d69861c2b37f8403", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 1, + "row": 2595 + }, + { + "path": "+nla/+net/+mcc/FreedmanLane.m", + "sha256": "2455742f1fd60a9a7e7cf5f87e083070fc4ea8c7e696725898ddd57c8b8288d4", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 1, + "row": 2500 + }, + { + "path": "+nla/+net/+mcc/HolmBonferroni.m", + "sha256": "bd5d71445d756bfe87d4ec17fdc9f738fbda1ed5b46a3052d96393affea21406", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 1, + "row": 2640 + }, + { + "path": "+nla/+net/+mcc/None.m", + "sha256": "28bbbb3a90bbfc14f06e864f82ac63272bcbbd345072c00cfac40f2b3002a7ac", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 1, + "row": 2497 + }, + { + "path": "+nla/+net/+mcc/WestfallYoung.m", + "sha256": "e9031c981d9f247ea72da1119d9bc3bd0b0cfb4ea7b26b57fe434e330ce07af7", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 1, + "row": 2503 + }, + { + "path": "+nla/+net/+result/+chord/ChordPlotter.m", + "sha256": "e41a271459f181c84fbc568f6d2706491835379dd258e0deb79b3174a8a98879", + "language": "MATLAB", + "lines": 283, + "truncated": false, + "block": 1, + "row": 4154 + }, + { + "path": "+nla/+net/+result/+plot/NetworkTestPlotApp_exported.m", + "sha256": "66bb92aa7b76cace7cae919cd70f11d2fd58dc680c156d5ffb05d2748fc12665", + "language": "MATLAB", + "lines": 726, + "truncated": false, + "block": 1, + "row": 4317 + }, + { + "path": "+nla/+net/+result/+plot/PermutationTestPlotter.m", + "sha256": "450f75b2d338146a9d28ac2cc93000ba4ed8f7ae8cd50e7930e572d3a6757c94", + "language": "MATLAB", + "lines": 89, + "truncated": false, + "block": 1, + "row": 3524 + }, + { + "path": "+nla/+net/+result/NetworkResultPlotParameter.m", + "sha256": "3306ca0438efaa07258157abd8ef70f6c8d3f38133c9441e23689a49c8e968ab", + "language": "MATLAB", + "lines": 269, + "truncated": false, + "block": 1, + "row": 4129 + }, + { + "path": "+nla/+net/+result/NetworkTestResult.m", + "sha256": "463e2125979bf203a635ec582f994dcff9637ff30790d0f9c67a5efefb5fdd48", + "language": "MATLAB", + "lines": 529, + "truncated": false, + "block": 1, + "row": 4294 + }, + { + "path": "+nla/+net/+test/ChiSquaredTest.m", + "sha256": "258543c0c190159d5c65e63aa4df7bfa4fbf6d97dbec17703636e15d074dcb7b", + "language": "MATLAB", + "lines": 81, + "truncated": false, + "block": 1, + "row": 3620 + }, + { + "path": "+nla/+net/+test/HyperGeometricTest.m", + "sha256": "dc1c855e7d45e69b0fc13ae96a36dc45a6051c29d76dc9e22739d97853231c64", + "language": "MATLAB", + "lines": 80, + "truncated": false, + "block": 1, + "row": 3615 + }, + { + "path": "+nla/+net/+test/StudentTTest.m", + "sha256": "65347be0def1bbb2bc032d719f75f3aa08245044c7f05554103cd2b4ea80cc2f", + "language": "MATLAB", + "lines": 70, + "truncated": false, + "block": 1, + "row": 3476 + }, + { + "path": "+nla/+net/+test/WelchTTest.m", + "sha256": "9f2b933e0e84647b6e7acd0219310d9e0703c80182dd52ce710ee0a961da7cfb", + "language": "MATLAB", + "lines": 76, + "truncated": false, + "block": 1, + "row": 3492 + }, + { + "path": "+nla/+net/+test/WilcoxonTest.m", + "sha256": "5010ad711aafd0f5446d1472673d5236aa7a147942b526a0536a61eb6bd04f91", + "language": "MATLAB", + "lines": 76, + "truncated": false, + "block": 1, + "row": 3525 + }, + { + "path": "+nla/+net/CohenDTest.m", + "sha256": "0df005844ed6998e5bd7031d991401add5f687e800163f161006c2ccdcec18b7", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 1, + "row": 3200 + }, + { + "path": "+nla/+net/ResultRank.m", + "sha256": "51a25ec04086d7f74df839c19df5f0d6b1ee0a883cc3340781586c28581e3863", + "language": "MATLAB", + "lines": 216, + "truncated": false, + "block": 1, + "row": 4125 + }, + { + "path": "+nla/+net/genBaseInputs.m", + "sha256": "15cefa73c3776ce6b12e085cd799beb42cbf9f2aae0de6c27ced73604b579562", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 1, + "row": 2509 + }, + { + "path": "+nla/+net/unittests/NetworkResultPlotParameterTestCase.m", + "sha256": "9c07ac0784ddbe236e18b061f2e8151c158f1966d9733c28e5798fb82b7b7bf0", + "language": "MATLAB", + "lines": 175, + "truncated": false, + "block": 1, + "row": 4053 + }, + { + "path": "+nla/+net/unittests/NetworkTestResultTestCase.m", + "sha256": "52cfc3d27632aabd3628b601c59267beb5fd92fee4c8e37655ee66230a67343b", + "language": "MATLAB", + "lines": 126, + "truncated": false, + "block": 1, + "row": 3875 + }, + { + "path": "+nla/+net/unittests/NetworkTestsTestCase.m", + "sha256": "b439d485201d7643c6ced39aa8c3983337b22b1876e08e9291af70d6129088b0", + "language": "MATLAB", + "lines": 120, + "truncated": false, + "block": 1, + "row": 3789 + }, + { + "path": "+nla/+net/unittests/ResultRankTestCase.m", + "sha256": "b1bfc1eb5bd9a7aaf0c865510aad425b109dd13882f8953fdf206fe041284354", + "language": "MATLAB", + "lines": 157, + "truncated": false, + "block": 1, + "row": 3948 + }, + { + "path": "+nla/+qualityControl/checkHeadMotion.m", + "sha256": "5e0e44ad9fa316e165f0d668330f5d627264959c00b4fbcda811d7226e63bcaa", + "language": "MATLAB", + "lines": 121, + "truncated": false, + "block": 1, + "row": 3642 + }, + { + "path": "+nla/+qualityControl/checkNormalityWithKS.m", + "sha256": "51c10e87b616299e1aee79e3edde208866b6de71bf4d2f525f337a99cde3398f", + "language": "MATLAB", + "lines": 75, + "truncated": false, + "block": 1, + "row": 3389 + }, + { + "path": "+nla/+qualityControl/viewSilhouetteCoeff.m", + "sha256": "02c6bd5ba4fe9ba1cfac49cefc50fbd0dae21fa32c9de46369eea4cdac375e65", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 1, + "row": 2929 + }, + { + "path": "+nla/ACCURACY_MARGIN.m", + "sha256": "9b9c48f1af1647a52e88761c5b648bd84a9e9c6fab70ed29c89ff6e15bf3c3b8", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 1, + "row": 2338 + }, + { + "path": "+nla/CortexAnatomy.m", + "sha256": "73817aee705945d3ad46093477358adec9de60e61a975e49aa37ceee4fe7a1c0", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 1, + "row": 2450 + }, + { + "path": "+nla/DeepCopyable.m", + "sha256": "355849b0003d62c5f2e9172d63988b131530af3dc3340b17f5ea604f6c2d4077", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 1, + "row": 2360 + }, + { + "path": "+nla/DialogOption.m", + "sha256": "feca0be8822f57d99f5638b9c8ad2106e3eca4fc6bf191285039c5867c45cf20", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 1, + "row": 2277 + }, + { + "path": "+nla/Direction.m", + "sha256": "75bdd4338114381af047529d2a9e67e0fbdc03ec695b4b96d70c8cb8f2d6c811", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 1, + "row": 2249 + }, + { + "path": "+nla/HistBin.m", + "sha256": "a7801f1ddcb9864ad096a60212ae8a442edc67769990d1cd545a6735eff82fc9", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 1, + "row": 2399 + }, + { + "path": "+nla/MultiContrastResult.m", + "sha256": "d74bc340472c7544512a212464ae91145ccc7406553a3d2a89356394b81ed133", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 1, + "row": 3190 + }, + { + "path": "+nla/Network.m", + "sha256": "6a9549fb16da3100bb3f52221b62e5729c685dbfd7bd566555d9245765a34fe1", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 1, + "row": 2661 + }, + { + "path": "+nla/NetworkAtlas.m", + "sha256": "8757269b4e842dfbca5de14d607270f146ff40d200d2d1fe226301a6021df0f2", + "language": "MATLAB", + "lines": 148, + "truncated": false, + "block": 1, + "row": 3786 + }, + { + "path": "+nla/NetworkLevelMethod.m", + "sha256": "97575b724cf6c33e88443b38bc85f75327424acea2bd67d31984242ff58d00dd", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 1, + "row": 2284 + }, + { + "path": "+nla/PartialVarianceType.m", + "sha256": "81689a4f80f85ee4d2ea277b1da3350285a0d55e331a43e9bc1f75b69a7b615e", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 1, + "row": 2314 + }, + { + "path": "+nla/PlotType.m", + "sha256": "36397ecdf3f6b3ed7fd1ee9f87ca21d14da492c35d2ecf5e223a59b5e5ce5fa8", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 1, + "row": 2260 + }, + { + "path": "+nla/ROI.m", + "sha256": "71d6e22a7103d1e85a6defce76dc046b62287fd01ea281ebfea540074b815338", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 1, + "row": 2428 + }, + { + "path": "+nla/ResultPool.m", + "sha256": "9c63ed840e917637655631e941327c5fdc3901f2da7e3fe7e20a0de524d9e855", + "language": "MATLAB", + "lines": 102, + "truncated": false, + "block": 1, + "row": 3582 + }, + { + "path": "+nla/Test.m", + "sha256": "7ae8d12b692453c2d411749e5ea4326a281762d991f3d01ee12c2fcd5b90c8b8", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 1, + "row": 2247 + }, + { + "path": "+nla/TestPool.m", + "sha256": "fadef0bbddc98a6708c71c3873ca47082e0e9fbb775a723273928d8a3ea2821f", + "language": "MATLAB", + "lines": 444, + "truncated": false, + "block": 1, + "row": 4254 + }, + { + "path": "+nla/TestResult.m", + "sha256": "9ac18207835a965684a77303adfe2c1a16842ab66de8813c1bf83f7fee3bafec", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 1, + "row": 2266 + }, + { + "path": "+nla/TriMatrix.m", + "sha256": "2f17356a33609c06a327acf1e4abd6268bcd1a02b639a708f7ceefb10397e437", + "language": "MATLAB", + "lines": 198, + "truncated": false, + "block": 1, + "row": 3938 + }, + { + "path": "+nla/TriMatrixDiag.m", + "sha256": "d63fa924bee6c008c0ed757c71dc0aed332351a34e530ce8fa0a0bbbe6d39bc8", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 1, + "row": 2322 + }, + { + "path": "+nla/VERSION.m", + "sha256": "834aaea882e9b8a0be79d49e8a7dc542592db03aa94fdfbfa5986f3671ffb55b", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 1, + "row": 2323 + }, + { + "path": "+nla/findRootPath.m", + "sha256": "2bf786345e092d99cad9a4106df940e37c7972dcf2c20bfd5caffe9333c5cb74", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 1, + "row": 2625 + }, + { + "path": "+nla/fisherR2Z.m", + "sha256": "a801868316104b7b5d7b5dfa987ecc39061e44036963cee6be8e02547fd6be79", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 1, + "row": 2346 + }, + { + "path": "+nla/genTests.m", + "sha256": "8f6a73dc8c55eb40c0fa3a3f5ece719e8a1a42dd55f4658b198c628413da6585", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 1, + "row": 2815 + }, + { + "path": "+nla/partialVariance.m", + "sha256": "0623bdad5096d052b8a5e0a453afe4aab2018311bff7407644b94edc2e9b5ed9", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 1, + "row": 3191 + }, + { + "path": "+nla/removeNetworks.m", + "sha256": "fed5ec690096712bc7daf851e1aab68f86455810551a826b0a6d4034ec5ed7a5", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 1, + "row": 3409 + }, + { + "path": "+nla/silhouetteCoeff.m", + "sha256": "a3000717032cc5b354e0c6a5097cc6724b983f3e929c351c27a2bad9a94f8f48", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 1, + "row": 2942 + }, + { + "path": "+nla/unittests/TestPoolTest.m", + "sha256": "d8836da13cae14b008d4db4c865cafff572690671bba06fe5fb6faa74be5bb21", + "language": "MATLAB", + "lines": 172, + "truncated": false, + "block": 1, + "row": 3974 + }, + { + "path": "+nla/validateInputStruct.m", + "sha256": "2e3b60c2364d2424805b9f563f20982a7b5eae1827912485fad0d66688ebb596", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 1, + "row": 2341 + }, + { + "path": "+nla/welchT.m", + "sha256": "c5a1d3500065b6791a153c817c23020f71efcb56f78e183b35df3c012075c255", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 1, + "row": 2774 + }, + { + "path": "LICENSE.txt", + "sha256": "24c4c67a8f636265cf35133f99e5779cdb54c8e1c3fd9bb1feb65ca804302e14", + "language": "License", + "lines": 25, + "truncated": false, + "block": 1, + "row": 2188 + }, + { + "path": "NLAResult_exported.m", + "sha256": "b29bafa6bdc9810a27a49b73cc59d558ee3a2822a28633698d4ba315a7736a30", + "language": "MATLAB", + "lines": 912, + "truncated": false, + "block": 1, + "row": 4322 + }, + { + "path": "NLA_GUI_exported.m", + "sha256": "d6ea6a36b11fc2b547d57061bdf1e8b088e245348ea40607e426bf1105936117", + "language": "MATLAB", + "lines": 538, + "truncated": false, + "block": 1, + "row": 4277 + }, + { + "path": "README.md", + "sha256": "8ae96129df843c47f01a990ae248a90971a18fa47f58aa00159144c67dd58f95", + "language": "Text", + "lines": 5, + "truncated": false, + "block": 1, + "row": 11772 + }, + { + "path": "docs/source/conf.py", + "sha256": "6b2385a56e2e6ce1177c57bc7ab0d22de16be98afc638add73f764d117a4ee52", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 1, + "row": 6149 + }, + { + "path": "export_mlapp.py", + "sha256": "3bacd9212a24335988c921bcdcb2ebcec6906855c03c32847eb178c60e3b1aca", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 1, + "row": 5537 + }, + { + "path": "main_pipeline.m", + "sha256": "de49b58059a4c56b26c3de41d3b07b38f65b37f49e7c6284a30d969e7a1cd08d", + "language": "MATLAB", + "lines": 113, + "truncated": false, + "block": 1, + "row": 3606 + }, + { + "path": "precalculated_pipeline.m", + "sha256": "a2576ad23f331e4a1b22ba5fc93df1a64261d3fd9d98dbafc046bcc72de19568", + "language": "MATLAB", + "lines": 78, + "truncated": false, + "block": 1, + "row": 3340 + }, + { + "path": "result_report_scripts/FunctionBasedPlotExample.m", + "sha256": "fc53cc22c6f7909cab013c9a6d6bc5b6b210b109fee71ad5434ba86f85bbd1d5", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 1, + "row": 3111 + }, + { + "path": "result_report_scripts/PlotSelectedNonPerm.m", + "sha256": "04000065ae09fb62afbee9cc622976a1dc719f8f81de156504d9831bb3588479", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 1, + "row": 3087 + }, + { + "path": "runTests.m", + "sha256": "967e6d65aafbea3f2ead8b63b8449b1d81501f20348e5b6e505f04d5a52f1cbf", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 1, + "row": 2761 + } + ] +} \ No newline at end of file diff --git a/manifests/21/zenodo__20688765.json b/manifests/21/zenodo__20688765.json new file mode 100644 index 0000000000000000000000000000000000000000..f6f581d7a82d0d9bbc9d791364f04a218e1a457a --- /dev/null +++ b/manifests/21/zenodo__20688765.json @@ -0,0 +1,633 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:20688765", + "url": "10.5281/zenodo.20688765", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "d6cc15ab2ff6a2080b92c4fa41c7a5a87f7f392fcfc5d00c5529108bef2f3f11", + "language": "Text", + "lines": 2, + "truncated": false, + "block": 2, + "row": 2583 + }, + { + "path": "main_eeg.py", + "sha256": "23999bac6775b301b169eb4e02e0be6ecf426b519e806fc6f8fa44612872a39b", + "language": "Python", + "lines": 180, + "truncated": false, + "block": 2, + "row": 1969 + }, + { + "path": "main_neural_trajectories.py", + "sha256": "8bed8d926d2f64165afa1f10395b8c8099ccce6c84eb7326c6c52d1b6b4e62ad", + "language": "Python", + "lines": 180, + "truncated": false, + "block": 2, + "row": 1962 + }, + { + "path": "stm32/Embedded code/Core/Inc/event.h", + "sha256": "1c3cc625cf92a2f09a95cd2cddce97323bfe3371072315057c4f64544c8771a9", + "language": "C/C++", + "lines": 49, + "truncated": false, + "block": 2, + "row": 699 + }, + { + "path": "stm32/Embedded code/Core/Inc/gpio.h", + "sha256": "92b391aae985f5b7b6fcbfc37daf922842a683a44045b4d55712007e860ec0ef", + "language": "C/C++", + "lines": 49, + "truncated": false, + "block": 2, + "row": 696 + }, + { + "path": "stm32/Embedded code/Core/Inc/main.h", + "sha256": "c166006f65ac19d8fe4324d2e04c12912a6ce00d582503cb04d7b45482d27cd3", + "language": "C/C++", + "lines": 70, + "truncated": false, + "block": 2, + "row": 743 + }, + { + "path": "stm32/Embedded code/Core/Inc/neural_manifold.h", + "sha256": "e861bee994eca3456fe50a99f83a5c6bd158de96cf1385e4b643c49b9befb030", + "language": "C/C++", + "lines": 38, + "truncated": false, + "block": 2, + "row": 632 + }, + { + "path": "stm32/Embedded code/Core/Inc/stm32f4xx_hal_conf.h", + "sha256": "ff02ba59ab22bfac952e0e5f90cd7bd601f7fe9d6dbcb3da94a2fa73ba3cc68a", + "language": "C/C++", + "lines": 490, + "truncated": false, + "block": 2, + "row": 902 + }, + { + "path": "stm32/Embedded code/Core/Inc/stm32f4xx_it.h", + "sha256": "c827ef0cd17f32e05ff4d17c2c90ea502bc8951b283c1a2932fbf7f86db655a5", + "language": "C/C++", + "lines": 67, + "truncated": false, + "block": 2, + "row": 736 + }, + { + "path": "stm32/Embedded code/Core/Src/event.c", + "sha256": "602a4a0ccaf477b7c44008e60ac9d451d823af18c56ddbfdcdd7f7b8c12cfebc", + "language": "C", + "lines": 171, + "truncated": false, + "block": 2, + "row": 13 + }, + { + "path": "stm32/Embedded code/Core/Src/gpio.c", + "sha256": "b06aa14846c30612c7d7b3783f15cf877c57ec4bba4794c7deb6d137ff490fe7", + "language": "C", + "lines": 75, + "truncated": false, + "block": 2, + "row": 6 + }, + { + "path": "stm32/Embedded code/Core/Src/main.c", + "sha256": "7d06a4071bb3882329676fccba3eb0095aad31615bab24a91c8cd5a5974417f4", + "language": "C", + "lines": 248, + "truncated": false, + "block": 2, + "row": 25 + }, + { + "path": "stm32/Embedded code/Core/Src/stm32f4xx_hal_msp.c", + "sha256": "1a12bcab36698bfd908f47edf7206359e612abd09b2ef14662ccb2f9eae3d3fb", + "language": "C", + "lines": 81, + "truncated": false, + "block": 2, + "row": 5 + }, + { + "path": "stm32/Embedded code/Core/Src/stm32f4xx_it.c", + "sha256": "fa6a943e3e1e2b544f5a0c1cef3c4197d213abfcb7b2bc09c4eb3f56f9a687ff", + "language": "C", + "lines": 217, + "truncated": false, + "block": 2, + "row": 16 + }, + { + "path": "stm32/Embedded code/Core/Src/system_stm32f4xx.c", + "sha256": "cdec0a2a4f0cfde6eae5bc16fce9466367fb3e2986bdfaa673822b64548958fe", + "language": "C", + "lines": 747, + "truncated": false, + "block": 2, + "row": 56 + }, + { + "path": "stm32/Embedded code/Middlewares/ST/STM32_USB_Device_Library/Class/CDC/Inc/usbd_cdc.h", + "sha256": "ac1ca7364a57a9927864de173b83e8e9415cf7ae8be97d550973a25e13eea596", + "language": "C/C++", + "lines": 179, + "truncated": false, + "block": 2, + "row": 858 + }, + { + "path": "stm32/Embedded code/Middlewares/ST/STM32_USB_Device_Library/Class/CDC/Inc/usbd_cdc_if_template.h", + "sha256": "3faa680872cf6eeb90bd98f1c4fc42c75c213f657ed18e0b506ac7db7becb7bf", + "language": "C/C++", + "lines": 43, + "truncated": false, + "block": 2, + "row": 708 + }, + { + "path": "stm32/Embedded code/Middlewares/ST/STM32_USB_Device_Library/Class/CDC/Src/usbd_cdc.c", + "sha256": "eabd8493f0f71436d9885a7e928f6ec03855a117576134e35d65342611bbf2b8", + "language": "C", + "lines": 875, + "truncated": false, + "block": 2, + "row": 57 + }, + { + "path": "stm32/Embedded code/Middlewares/ST/STM32_USB_Device_Library/Class/CDC/Src/usbd_cdc_if_template.c", + "sha256": "edbac14312186e3b128567e6c7f47880d5c1cc5d371e3bfc89ccd2ddc5f891b6", + "language": "C", + "lines": 247, + "truncated": false, + "block": 2, + "row": 20 + }, + { + "path": "stm32/Embedded code/Middlewares/ST/STM32_USB_Device_Library/Core/Inc/usbd_conf_template.h", + "sha256": "9407bedb3862fdbb0b1501170534f1cc2f030eca5ece9246728a538eefc2a988", + "language": "C/C++", + "lines": 222, + "truncated": false, + "block": 2, + "row": 870 + }, + { + "path": "stm32/Embedded code/Middlewares/ST/STM32_USB_Device_Library/Core/Inc/usbd_core.h", + "sha256": "f593c1b9628eb67229edd59164c970e699d91d40691efc9956bb82efe4d3964e", + "language": "C/C++", + "lines": 172, + "truncated": false, + "block": 2, + "row": 865 + }, + { + "path": "stm32/Embedded code/Middlewares/ST/STM32_USB_Device_Library/Core/Inc/usbd_ctlreq.h", + "sha256": "0d766fe68a0f746b29caa7c6ea1e96c45c5fca50360e1d224c19935a76eb666f", + "language": "C/C++", + "lines": 101, + "truncated": false, + "block": 2, + "row": 747 + }, + { + "path": "stm32/Embedded code/Middlewares/ST/STM32_USB_Device_Library/Core/Inc/usbd_def.h", + "sha256": "870e6ef67d27359c3ba5158d83425d54228ee021838d71c0291b4b511696e560", + "language": "C/C++", + "lines": 514, + "truncated": false, + "block": 2, + "row": 900 + }, + { + "path": "stm32/Embedded code/Middlewares/ST/STM32_USB_Device_Library/Core/Inc/usbd_desc_template.h", + "sha256": "9d85caed061945147c877efab2e3685064815849dd317d7918d66732b833053c", + "language": "C/C++", + "lines": 61, + "truncated": false, + "block": 2, + "row": 772 + }, + { + "path": "stm32/Embedded code/Middlewares/ST/STM32_USB_Device_Library/Core/Inc/usbd_ioreq.h", + "sha256": "fc7ffbed8ff7752453bb510493b43165ef29f4c5091e50fb6d0c4c8652d4f560", + "language": "C/C++", + "lines": 113, + "truncated": false, + "block": 2, + "row": 767 + }, + { + "path": "stm32/Embedded code/Middlewares/ST/STM32_USB_Device_Library/Core/Src/usbd_conf_template.c", + "sha256": "fe74e77c09d965bd692db6434eb3b1bc00fac01a4967245aa6bb874c44d52627", + "language": "C", + "lines": 282, + "truncated": false, + "block": 2, + "row": 27 + }, + { + "path": "stm32/Embedded code/Middlewares/ST/STM32_USB_Device_Library/Core/Src/usbd_core.c", + "sha256": "61b0edbeb0e9c921dd8580eeeb18c85f0ddd1fa0a6228b592076667148acae78", + "language": "C", + "lines": 1220, + "truncated": false, + "block": 2, + "row": 61 + }, + { + "path": "stm32/Embedded code/Middlewares/ST/STM32_USB_Device_Library/Core/Src/usbd_ctlreq.c", + "sha256": "08302a5e0379cd85428ae2a17d3d43420c9c47d8233f91a8813a0bddfc087b1d", + "language": "C", + "lines": 1051, + "truncated": false, + "block": 2, + "row": 54 + }, + { + "path": "stm32/Embedded code/Middlewares/ST/STM32_USB_Device_Library/Core/Src/usbd_desc_template.c", + "sha256": "0089963a5a1958b702279bd030ce44d50482be9d81b118ce9d6488133c45beb0", + "language": "C", + "lines": 452, + "truncated": false, + "block": 2, + "row": 43 + }, + { + "path": "stm32/Embedded code/Middlewares/ST/STM32_USB_Device_Library/Core/Src/usbd_ioreq.c", + "sha256": "047c63014d1242a8d4254495d019f710bead71de566897c6daaf97f496a019b4", + "language": "C", + "lines": 224, + "truncated": false, + "block": 2, + "row": 15 + }, + { + "path": "stm32/Embedded code/USB_DEVICE/App/usb_device.c", + "sha256": "9979269dc2ab997dcd756154cb90db886b8148ccae29c7bae5d45aff3eea93d6", + "language": "C", + "lines": 100, + "truncated": false, + "block": 2, + "row": 7 + }, + { + "path": "stm32/Embedded code/USB_DEVICE/App/usb_device.h", + "sha256": "4a5fab82ee97cfddf64056208a861e53a6fb1f59f8199e4dfc0829fd7e1c7055", + "language": "C/C++", + "lines": 102, + "truncated": false, + "block": 2, + "row": 761 + }, + { + "path": "stm32/Embedded code/USB_DEVICE/App/usbd_cdc_if.c", + "sha256": "02f567a178484e277646fbdbafb0a2ca6e7d0066d5f062e5fcdc420822cd1829", + "language": "C", + "lines": 338, + "truncated": false, + "block": 2, + "row": 31 + }, + { + "path": "stm32/Embedded code/USB_DEVICE/App/usbd_cdc_if.h", + "sha256": "5f0de5db377ad373d4c844a3cbd45224844635e383e2ca9b5bc96f32ee2985d7", + "language": "C/C++", + "lines": 131, + "truncated": false, + "block": 2, + "row": 782 + }, + { + "path": "stm32/Embedded code/USB_DEVICE/App/usbd_desc.c", + "sha256": "0d62ac7c438646f1c75b54beb6ceac2ef7a768fd4de19218630cfa1fd1296a46", + "language": "C", + "lines": 445, + "truncated": false, + "block": 2, + "row": 38 + }, + { + "path": "stm32/Embedded code/USB_DEVICE/App/usbd_desc.h", + "sha256": "d8fa7735942ce49c45be89e732f07bd36c70b75dbeff6ee1877b07741544491c", + "language": "C/C++", + "lines": 143, + "truncated": false, + "block": 2, + "row": 793 + }, + { + "path": "stm32/Embedded code/USB_DEVICE/Target/usbd_conf.c", + "sha256": "e30358af4eb97f5925035417de461cd5e47c2cc2761ee24e77101a9c50e297f3", + "language": "C", + "lines": 671, + "truncated": false, + "block": 2, + "row": 47 + }, + { + "path": "stm32/Embedded code/USB_DEVICE/Target/usbd_conf.h", + "sha256": "02e0459c784b5ad6c4064fe4ebdf654898668afdb81936a2c944a6301b0473e0", + "language": "C/C++", + "lines": 173, + "truncated": false, + "block": 2, + "row": 837 + }, + { + "path": "stm32/Neural_manifold/adjustwidget.cpp", + "sha256": "54e469ffa4b1c2ee7d003dad1c5e0d31d1cac80f499d47697be0cb215b860cf7", + "language": "C++", + "lines": 150, + "truncated": false, + "block": 2, + "row": 224 + }, + { + "path": "stm32/Neural_manifold/adjustwidget.h", + "sha256": "6ee72eb08ce53f83cfff8f8f9203730e7f38716a4de53deadf1193d21d4a2358", + "language": "C/C++", + "lines": 64, + "truncated": false, + "block": 2, + "row": 723 + }, + { + "path": "stm32/Neural_manifold/buttonstyle.cpp", + "sha256": "f1bd7f7a3307b57e6abe685c91889fc531f9f5af87231f5b32f0010512ac0a60", + "language": "C++", + "lines": 203, + "truncated": false, + "block": 2, + "row": 279 + }, + { + "path": "stm32/Neural_manifold/buttonstyle.h", + "sha256": "d0bded1c795363ab3d67ae5cbc8b45fceae8eaec6036d6d00fd416d7627dbbb2", + "language": "C/C++", + "lines": 23, + "truncated": false, + "block": 2, + "row": 571 + }, + { + "path": "stm32/Neural_manifold/channelselectlayout.cpp", + "sha256": "ba6e68fb9decd0380da5140b68de6fcd0b59f1ab75eab982716da27673420680", + "language": "C++", + "lines": 60, + "truncated": false, + "block": 2, + "row": 138 + }, + { + "path": "stm32/Neural_manifold/channelselectlayout.h", + "sha256": "b021d9f6adf5eb5e4334e32edc90775cf5b1ee3a550e76676029c3aeb048a08f", + "language": "C/C++", + "lines": 28, + "truncated": false, + "block": 2, + "row": 591 + }, + { + "path": "stm32/Neural_manifold/channelstatelayout.cpp", + "sha256": "4c438bceb4ea1ee3c493fbdcd0610813d0157fe8be82ee43bab0d6e2d1f47bef", + "language": "C++", + "lines": 72, + "truncated": false, + "block": 2, + "row": 151 + }, + { + "path": "stm32/Neural_manifold/channelstatelayout.h", + "sha256": "d192c1cbaa5ce1c8587e5c63c440e41a6a375ccb445435b3b2f309b5780a653c", + "language": "C/C++", + "lines": 26, + "truncated": false, + "block": 2, + "row": 561 + }, + { + "path": "stm32/Neural_manifold/configparam.cpp", + "sha256": "194b3879bc6733ef43b13625fe522778afd2df2e5e72c68bb2a85e575bff52db", + "language": "C++", + "lines": 6, + "truncated": false, + "block": 2, + "row": 75 + }, + { + "path": "stm32/Neural_manifold/configparam.h", + "sha256": "08b887ebcb11229839b0686da1d32fa13908f69ee32142f928af894d595c1351", + "language": "C/C++", + "lines": 14, + "truncated": false, + "block": 2, + "row": 494 + }, + { + "path": "stm32/Neural_manifold/configparammanager.cpp", + "sha256": "2b8f63fb9a3d5cc39e41a3e032ae777bd2560d881ac0cc684b155c90d12aa98f", + "language": "C++", + "lines": 99, + "truncated": false, + "block": 2, + "row": 157 + }, + { + "path": "stm32/Neural_manifold/configparammanager.h", + "sha256": "c7d7c38b1e362da20abc0e3284ac1226406923b9953ea5371f2c009ebdd164e2", + "language": "C/C++", + "lines": 26, + "truncated": false, + "block": 2, + "row": 612 + }, + { + "path": "stm32/Neural_manifold/controldialog.cpp", + "sha256": "af1447331129b00220f33ba46928be78c82fd72007ef25130cec29dc1e8cdee2", + "language": "C++", + "lines": 75, + "truncated": false, + "block": 2, + "row": 137 + }, + { + "path": "stm32/Neural_manifold/controldialog.h", + "sha256": "91de1ef5543583c3914af79ce49a87f93c40614a691b7061f4d3113974e17c11", + "language": "C/C++", + "lines": 33, + "truncated": false, + "block": 2, + "row": 585 + }, + { + "path": "stm32/Neural_manifold/event.cpp", + "sha256": "1ee2dbb3c9029a0585f0aa5ef73dac2bc601a1674c148e0b5fde6c9e527fa29e", + "language": "C++", + "lines": 126, + "truncated": false, + "block": 2, + "row": 184 + }, + { + "path": "stm32/Neural_manifold/event.h", + "sha256": "5078f8e7e14f2c9113f969aa55bd14007b28f7b2e49ec7ccc7d5792b3163abbe", + "language": "C/C++", + "lines": 61, + "truncated": false, + "block": 2, + "row": 705 + }, + { + "path": "stm32/Neural_manifold/hardwarethread.cpp", + "sha256": "111862c03d44c29e8401dc3c4e8eda379952ae23d853a01646df6376cddffd64", + "language": "C++", + "lines": 300, + "truncated": false, + "block": 2, + "row": 330 + }, + { + "path": "stm32/Neural_manifold/hardwarethread.h", + "sha256": "617df594b3f6d1c684c9fbde87f49c7410dead099c7ccd5f5e29cd5dff2632bb", + "language": "C/C++", + "lines": 49, + "truncated": false, + "block": 2, + "row": 636 + }, + { + "path": "stm32/Neural_manifold/loaddata.cpp", + "sha256": "9238fdd7fa8bf1bb7bc76f44d9ef2ce89345b8f91772970f3537210a03b8d2ad", + "language": "C++", + "lines": 245, + "truncated": false, + "block": 2, + "row": 321 + }, + { + "path": "stm32/Neural_manifold/loaddata.h", + "sha256": "aed8bf50c396120a5ca98c200bd6d3a30024423eb0eeac7d9b89cf2f01cdafb4", + "language": "C/C++", + "lines": 18, + "truncated": false, + "block": 2, + "row": 506 + }, + { + "path": "stm32/Neural_manifold/main.cpp", + "sha256": "c3a37fbadb2fd050b5135b3f84be2dcc0d9f522a9e585dc1b9f8ea3dba4422eb", + "language": "C++", + "lines": 25, + "truncated": false, + "block": 2, + "row": 83 + }, + { + "path": "stm32/Neural_manifold/main_widget.cpp", + "sha256": "e4186e673ebfa39acca73698879bea6e5a5cb38faa7a31297e5cce0b65a2ba58", + "language": "C++", + "lines": 253, + "truncated": false, + "block": 2, + "row": 307 + }, + { + "path": "stm32/Neural_manifold/main_widget.h", + "sha256": "b37ee4147b43ea6ba89d646a847be24988a667b2bf9313699ec7c6adeea92be8", + "language": "C/C++", + "lines": 69, + "truncated": false, + "block": 2, + "row": 724 + }, + { + "path": "stm32/Neural_manifold/plotdialog.cpp", + "sha256": "18d47da29ac2f1daa07650454d0c6351de9f1cb89d20f01037d4724d1a93db75", + "language": "C++", + "lines": 221, + "truncated": false, + "block": 2, + "row": 314 + }, + { + "path": "stm32/Neural_manifold/plotdialog.h", + "sha256": "011556e1428544862d17fa4e2bfa21ffd8187f8762f4520159737fea03d25932", + "language": "C/C++", + "lines": 43, + "truncated": false, + "block": 2, + "row": 662 + }, + { + "path": "stm32/Neural_manifold/scrollareastyle.cpp", + "sha256": "ffc770f5e89865f605152029d7213b3a9c833eaba3b743a5d57e6bd48c9da9f7", + "language": "C++", + "lines": 48, + "truncated": false, + "block": 2, + "row": 129 + }, + { + "path": "stm32/Neural_manifold/scrollareastyle.h", + "sha256": "5d7269d76ea7f53c6026accbe37287f7e2001b70aab594084054c417ff2ac52a", + "language": "C/C++", + "lines": 12, + "truncated": false, + "block": 2, + "row": 505 + }, + { + "path": "stm32/Neural_manifold/serial.cpp", + "sha256": "3ad583b6bb16c6a5a1f0b07bf17a8d8683f14fd09a1fff7eeae577bd5ec3bf38", + "language": "C++", + "lines": 93, + "truncated": false, + "block": 2, + "row": 160 + }, + { + "path": "stm32/Neural_manifold/serial.h", + "sha256": "518cb53e6db76816ca48b5eb44af5b8e394c3a682a20141b1295e35ed3067353", + "language": "C/C++", + "lines": 20, + "truncated": false, + "block": 2, + "row": 513 + }, + { + "path": "stm32/Neural_manifold/statuslightstyle.cpp", + "sha256": "c03985a3ed94900f19b5ba2f5f475d8982c36f3bef3246072320a801482759da", + "language": "C++", + "lines": 54, + "truncated": false, + "block": 2, + "row": 123 + }, + { + "path": "stm32/Neural_manifold/statuslightstyle.h", + "sha256": "11a168ea1d502b5c1a53a686612b9a549c330d9ac97a5c04962e9976272a7541", + "language": "C/C++", + "lines": 21, + "truncated": false, + "block": 2, + "row": 545 + } + ] +} \ No newline at end of file diff --git a/manifests/22/github.com__schmidtfa__cardiac_1_f.json b/manifests/22/github.com__schmidtfa__cardiac_1_f.json new file mode 100644 index 0000000000000000000000000000000000000000..0ca510f32eab97e8a5cee2ad5e76f03171a719ec --- /dev/null +++ b/manifests/22/github.com__schmidtfa__cardiac_1_f.json @@ -0,0 +1,480 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/schmidtfa/cardiac_1_f", + "url": "https://github.com/schmidtfa/cardiac_1_f", + "host": "github.com", + "commit": "4562c0dc318930c46b77732b73d85504b2b471c4", + "license": "BSD-3-Clause", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": ".ipynb_checkpoints/ei_age-checkpoint.ipynb", + "sha256": "c95e77a1ba8f8753231a20f6f42e588ae5ff02bfdea368abc749560e60817792", + "language": "Jupyter", + "lines": 187, + "truncated": false, + "block": 1, + "row": 1840 + }, + { + "path": ".ipynb_checkpoints/run_ei_slope-checkpoint.py", + "sha256": "7c13de4821a2e4efe3fb20d414a72162e8f09e9572dd5aa88d6212327af57240", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 1, + "row": 5868 + }, + { + "path": ".ipynb_checkpoints/scrape_resting-checkpoint.ipynb", + "sha256": "a2e3225c40d0a058834255e42ec43817d971b4bd7a1c3311f85253d4ac27811e", + "language": "Jupyter", + "lines": 157, + "truncated": false, + "block": 1, + "row": 1752 + }, + { + "path": "LICENSE", + "sha256": "90eac0713b048378b3b4175b1d70ff2f9007381b1a25dcc186f3cda030e702d6", + "language": "License", + "lines": 28, + "truncated": false, + "block": 1, + "row": 2193 + }, + { + "path": "README.md", + "sha256": "cb2d6923f1078bc45c308a14b97b883d3652079bee058aad977bd49d2b05fd8f", + "language": "Text", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11779 + }, + { + "path": "cluster_jobs/abstract_jobs/meta_job.py", + "sha256": "8603894624a88d6435d2f379d55efd529fa2e3981540189e4f878e2a09ab5367", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 1, + "row": 5116 + }, + { + "path": "cluster_jobs/abstract_jobs/preprocess_abstract.py", + "sha256": "9064b4da592a9a18c42efe1cbb1b23ce83f9d9feeee92c3e49cac5efa543545f", + "language": "Python", + "lines": 222, + "truncated": false, + "block": 1, + "row": 8471 + }, + { + "path": "cluster_jobs/bay_pred_cam_can.py", + "sha256": "8e75af33b56e5d3a835a51cbb3cc631d4333526cc3cc806b138205c7fdeaea29", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 1, + "row": 5865 + }, + { + "path": "cluster_jobs/bay_pred_cam_can_irasa.py", + "sha256": "ff4d6dd2a450848177112f4205c82591161d50952e8382cbae294581011320fc", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 1, + "row": 5889 + }, + { + "path": "cluster_jobs/cam_can_single_channel_slopes.py", + "sha256": "ea5162908f4dbc4a0160ce3cf2ed58be9c6442317579287e424a30e8d6bb9015", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 1, + "row": 7258 + }, + { + "path": "cluster_jobs/head_movement_camcan.py", + "sha256": "54cbf64b70cb30f4039ee2f9da2433a0139d107fb2abba77eb44db36354c9080", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 1, + "row": 5996 + }, + { + "path": "cluster_jobs/preprocess_meg_camcan.py", + "sha256": "6bf5948c40b13c2a1e7a274fef637634929a9577a78fdf567e9365a38b5a7c2d", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 1, + "row": 5930 + }, + { + "path": "cluster_jobs/preprocess_meg_sbg.py", + "sha256": "ba16af77be42f38031a6f22aeb1284723e877e0a5776026c08d19df2fb87ed2e", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 1, + "row": 6504 + }, + { + "path": "cluster_jobs/stats_across_eog.py", + "sha256": "660f8bbf4f61abbb47407faf307f240fd5e42d6359df618c65c0d0e20d8a0469", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 5900 + }, + { + "path": "cluster_jobs/stats_across_irasa.py", + "sha256": "7ddc71b346ed9f17ba029e5ccc01194c903213a8e53dd5c1088f7af1079bf69e", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 1, + "row": 6913 + }, + { + "path": "cluster_jobs/stats_across_irasa_s_chan.py", + "sha256": "67733215fa138ead79cbfde7301eabf57adf7a926615b18b0ae8d045a04101ba", + "language": "Python", + "lines": 158, + "truncated": false, + "block": 1, + "row": 8152 + }, + { + "path": "cluster_jobs/stats_across_irasa_s_chan_control.py", + "sha256": "72041c5668e93ba59117ad1c7e4189be651ad5fee2a5d73978f56ebc54ddf38e", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 1, + "row": 7212 + }, + { + "path": "notebooks/ c_1_f_age_sbg.ipynb", + "sha256": "bc013007d7ea2cf2f756ee48f52b34a7fa88a6ca41bfa40d68c906b38b04fd6b", + "language": "Jupyter", + "lines": 507, + "truncated": false, + "block": 1, + "row": 1978 + }, + { + "path": "notebooks/c_1_f_age_cam_can.py", + "sha256": "57f4261309839b96e93adecb5b078fb556283aee4cc33e5361f3a0af622b67d0", + "language": "Python", + "lines": 510, + "truncated": false, + "block": 1, + "row": 9283 + }, + { + "path": "notebooks/c_1_f_ecg_only.ipynb", + "sha256": "4b28f1b2ab0e56c39d0a050b83d75fc89464068f5aa584b422c4b0fdbcff9f58", + "language": "Jupyter", + "lines": 627, + "truncated": false, + "block": 1, + "row": 2017 + }, + { + "path": "notebooks/cam_can_beta_topo.py", + "sha256": "708bf9d9eb04bf88642bb2a31345cc6d1a6f438b2c1b3c0dd92835eee2beb2a5", + "language": "Python", + "lines": 103, + "truncated": false, + "block": 1, + "row": 7018 + }, + { + "path": "notebooks/cam_can_fooof.py", + "sha256": "51a600c61eec24921462a5cc24ebc0548600e9aa174921f1290d2018d4dbee31", + "language": "Python", + "lines": 360, + "truncated": false, + "block": 1, + "row": 8691 + }, + { + "path": "notebooks/cam_can_knee_comp.py", + "sha256": "af41f75f783b828f7895309c5fd37402c96adb33e50b5ac0529ab69fcbc9ea35", + "language": "Python", + "lines": 134, + "truncated": false, + "block": 1, + "row": 7236 + }, + { + "path": "notebooks/camcan_irasa_fooof_comp.py", + "sha256": "923b9d02b9595145a0bded74a194642e8e5fa735ca090bcc81141ec9fb56f4d3", + "language": "Python", + "lines": 321, + "truncated": false, + "block": 1, + "row": 8685 + }, + { + "path": "notebooks/ecg_only_1_f.ipynb", + "sha256": "7d49c8d5e4a0d91a5a266484fdadb7b721f7bd73f5752a4a8f27c45783562535", + "language": "Jupyter", + "lines": 554, + "truncated": false, + "block": 1, + "row": 1984 + }, + { + "path": "notebooks/eeg_meg_1f_preprocessing.py", + "sha256": "0029709e915a8f5ea39ea0bf5cbd52fe6ebb05eb5c25ddeb246299312361efc0", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 1, + "row": 7555 + }, + { + "path": "notebooks/eeg_meg_1f_trf.py", + "sha256": "b645bf7832b19981e77f8f63fdfd833e3586c292f0ec67641ebed7a8d0f8a611", + "language": "Python", + "lines": 329, + "truncated": false, + "block": 1, + "row": 8765 + }, + { + "path": "notebooks/figure_3b.py", + "sha256": "335d8fb37d93d320ca397cfd51b765f54070209bff5c974ad5d51cd328840ed6", + "language": "Python", + "lines": 283, + "truncated": false, + "block": 1, + "row": 8439 + }, + { + "path": "notebooks/figure_4.py", + "sha256": "686cf5f58521b2deb1de2be083d94eb9d917d40bdf3e843ad2a39e3910bb9d4f", + "language": "Python", + "lines": 512, + "truncated": false, + "block": 1, + "row": 9219 + }, + { + "path": "notebooks/figure_5.py", + "sha256": "5fcb9596dbb1f8ea2fde760f32f62b8ad0198f9c8f97d9b6edfaf662df02f24e", + "language": "Python", + "lines": 223, + "truncated": false, + "block": 1, + "row": 8007 + }, + { + "path": "notebooks/ica_thresholds_fig.py", + "sha256": "415c6240f50dc038fa48894b3dd70cd8e3c06f6cb1103c6c5c93cf77b835d3bf", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 1, + "row": 6047 + }, + { + "path": "notebooks/lit_scan_ecg_meeg.py", + "sha256": "5953911194d47a23aef6f42695284e63e987496be0ac5c7bfbd8a6cc34a2dc34", + "language": "Python", + "lines": 228, + "truncated": false, + "block": 1, + "row": 8023 + }, + { + "path": "notebooks/lit_text_analysis.py", + "sha256": "02226845bd606db2b39db572f3bc646d5debeec1084b12c914c63302e4b75ddb", + "language": "Python", + "lines": 308, + "truncated": false, + "block": 1, + "row": 8443 + }, + { + "path": "notebooks/movement_eog_eff.py", + "sha256": "c60e34cf7dc6593752a674261cec0f2d8f0e47bd2a07ce19f5ba0bba579fd8ee", + "language": "Python", + "lines": 156, + "truncated": false, + "block": 1, + "row": 7394 + }, + { + "path": "notebooks/sbg_irasa.py", + "sha256": "3cf38b57215a85828662ac453b98c82806fbc336a8a645755869d65c5c706457", + "language": "Python", + "lines": 265, + "truncated": false, + "block": 1, + "row": 8332 + }, + { + "path": "notebooks/scrape_resting_sbg.ipynb", + "sha256": "aa462b1179ae1fa25727a51bd1be83ccdcfc80099d5c6e7f3c0a86e1daa6327d", + "language": "Jupyter", + "lines": 109, + "truncated": false, + "block": 1, + "row": 1734 + }, + { + "path": "run_bay_pred_cam_can.py", + "sha256": "280972ab707cdbb2be2e9f4a23919dc075ab5eafa79619775e69a29310afcd50", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 1, + "row": 5993 + }, + { + "path": "run_movement.py", + "sha256": "abdf0e6216b7c6efaf8feb5de443e3d1904d21247ad55a545340e4b8eb7c1993", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 1, + "row": 5644 + }, + { + "path": "run_preproc_c_1_f_camcan.py", + "sha256": "7885cf691f077cfb75ed3e363a8e81994b8e394ec40d8ea873983f2e2d447e42", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 1, + "row": 5908 + }, + { + "path": "run_preproc_c_1_f_sbg.py", + "sha256": "20a99c6b5af449cb92adcba5424d4ee1f0a1318f5cd975096ddff761fae433bf", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 1, + "row": 5786 + }, + { + "path": "run_slopes_across_chs.py", + "sha256": "da02095c45c225de0445f3eb4b570c2ae9814a1a0848425535a570c4443780cf", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 1, + "row": 5560 + }, + { + "path": "run_stats_across.py", + "sha256": "b3764294a5b232ef01ebf935666bd0937aa5acf1d13a32ae9aa949ebd58190bb", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 1, + "row": 6079 + }, + { + "path": "run_stats_across_eog.py", + "sha256": "743af165c77e20e869191039718724e63b609933bf464941555f0afcdf47b2d8", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 1, + "row": 5760 + }, + { + "path": "run_stats_across_s_chans.py", + "sha256": "3b6167e1403057503c5eadd30b3d7b77f4c8f23378bcc4b6f3f836838631f833", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 1, + "row": 6337 + }, + { + "path": "utils/cleaning_utils.py", + "sha256": "997e789c333cdc1dc3ba0d965b19b3d4251f46703bf345953a46b1d15ca1a446", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 1, + "row": 5481 + }, + { + "path": "utils/data_loading.py", + "sha256": "0eea9badbe2a38e046137684db885cc66108d7eac59023f5325a71a295d01d86", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 1, + "row": 7554 + }, + { + "path": "utils/eelbrain_utils.py", + "sha256": "a6ce3d3863e9a9231b609fa053a4bf8c5d6642b38706b845f011d488531eb04d", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 1, + "row": 6243 + }, + { + "path": "utils/fooof_utils.py", + "sha256": "7b6dfb527cd01fe41ad25d56fc99db725df39d2eb3ac0d6aab74039cdb9d390f", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 1, + "row": 7609 + }, + { + "path": "utils/plot_utils.py", + "sha256": "91612138128c74773ad31adf651f5db6249eaa8a32b07edd84f78a07ca6113e9", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 1, + "row": 7437 + }, + { + "path": "utils/psd_utils.py", + "sha256": "a7a62278735286fab8e3fd4390bb1bcb62afdbf77b8527fd71470ed257944672", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 1, + "row": 7487 + }, + { + "path": "utils/pymc_utils.py", + "sha256": "6c80e2e939cd5b3625f56b0b76b267ef236585d84892661bbdf79f5e7ab6807e", + "language": "Python", + "lines": 108, + "truncated": false, + "block": 1, + "row": 7077 + }, + { + "path": "utils/trf_utils.py", + "sha256": "ab831ee0e06fa5b87b193aa9b1f7c28744a996b7583a7f989973b19a0a552fb3", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 1, + "row": 6554 + } + ] +} \ No newline at end of file diff --git a/manifests/22/github.com__umarklundlab__inutero_clonaltracing_e16gut.json b/manifests/22/github.com__umarklundlab__inutero_clonaltracing_e16gut.json new file mode 100644 index 0000000000000000000000000000000000000000..1d40f9d07721231fd89f33392346287e746be7ba --- /dev/null +++ b/manifests/22/github.com__umarklundlab__inutero_clonaltracing_e16gut.json @@ -0,0 +1,201 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/umarklundlab/inutero_clonaltracing_e16gut", + "url": "https://github.com/UMarklundLab/Inutero_clonaltracing_E16Gut", + "host": "github.com", + "commit": "616e26bff0494c376446fa645603249409f96ec2", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Automatic_annotation/SCSA.py", + "sha256": "cab1c7bb427eae03fc8f580ad5df6d57918b534f8ffe527ec758446dfb8d137f", + "language": "Python", + "lines": 1603, + "truncated": false, + "block": 1, + "row": 9835 + }, + { + "path": "Automatic_annotation/scanpy_findallmarkers.py", + "sha256": "17d571feac506b1fed0685484b6cc755ed8faf7b35f862d42134fc1e70ae06fb", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 1, + "row": 6692 + }, + { + "path": "Automatic_annotation/seurat_findallmarkers.R", + "sha256": "b021e1610be0e40679076705f72b87aac2b69612cb2e04cc5b7109b6f827bc42", + "language": "R", + "lines": 52, + "truncated": false, + "block": 1, + "row": 10057 + }, + { + "path": "Clonal_analysis/Barcode_E1_Clones.Rmd", + "sha256": "61bdc2195e082b8d7655ad8520ebd82c5045f01b8d699feee3aff620fbcdd90a", + "language": "R", + "lines": 1244, + "truncated": false, + "block": 1, + "row": 10599 + }, + { + "path": "Clonal_analysis/Barcode_E2_Clones.Rmd", + "sha256": "73f3f23bf875bf54b25585648e6d915a717028a634658fab0657b357dc650ae5", + "language": "R", + "lines": 1137, + "truncated": false, + "block": 1, + "row": 10594 + }, + { + "path": "Clonal_analysis/Barcode_E3_Clones.Rmd", + "sha256": "c43602f98e500b2cc889ba8814c4785ee89a08eba36506f557dc2d163ac35cd9", + "language": "R", + "lines": 1903, + "truncated": false, + "block": 1, + "row": 10609 + }, + { + "path": "Clonal_analysis/Clonal_Regional.Rmd", + "sha256": "46e007e14b271291b340ac4a044d3f76ef656076b336d2582247863fab3d71bc", + "language": "R", + "lines": 645, + "truncated": false, + "block": 1, + "row": 10547 + }, + { + "path": "Clonal_analysis/E1E2_Comparison.Rmd", + "sha256": "ee9c6ddc0ce62bd86e40d0ca4ad65c51c184f19679806b909f3c1d56ed63912c", + "language": "R", + "lines": 557, + "truncated": false, + "block": 1, + "row": 10520 + }, + { + "path": "Clonal_analysis/Transcriptome_Regional.Rmd", + "sha256": "47b73affd604c9b5780ca86da4c497ea19348fb0ee8a9515a9c60d9f16a27dba", + "language": "R", + "lines": 392, + "truncated": false, + "block": 1, + "row": 10503 + }, + { + "path": "Helpers/SoupXDoubletfinder.R", + "sha256": "17532aa3646eaa04b9b1931456426782a039190740d414ec658f9da06bef6804", + "language": "R", + "lines": 302, + "truncated": false, + "block": 1, + "row": 10424 + }, + { + "path": "Helpers/helpers.R", + "sha256": "4c4e00c6ab015c230516085866f0d29389d60cd225b6249c300b004188b5f050", + "language": "R", + "lines": 380, + "truncated": false, + "block": 1, + "row": 10487 + }, + { + "path": "LICENSE", + "sha256": "4a74d39aebe6f5b99d54bb3a48f1716a4f91dae2de123e1868b005910b260c45", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2096 + }, + { + "path": "Preprocessing/Assessing_ambinetRNA.R", + "sha256": "6781d0d5ab194454c02d9e9d406dbc9cc1d7e45561ce7a60983a9ee1cc89e6a4", + "language": "R", + "lines": 56, + "truncated": false, + "block": 1, + "row": 10095 + }, + { + "path": "Preprocessing/Expt1_Preprocessing.R", + "sha256": "89128710b7a4ea0261f3b8d829061e0478c2ed44d987402a610cc489a675525b", + "language": "R", + "lines": 234, + "truncated": false, + "block": 1, + "row": 10415 + }, + { + "path": "Preprocessing/Expt1_Processing.Rmd", + "sha256": "5c256874af3c3807f05a649be3527dd7b3735e205f7e78611a6ad0b85eef69cc", + "language": "R", + "lines": 747, + "truncated": false, + "block": 1, + "row": 10576 + }, + { + "path": "Preprocessing/Expt2_Preprocessing.R", + "sha256": "9d33978034eb748e5511b34bc6f20f2caf67b1166b898411aab464be8b5904f0", + "language": "R", + "lines": 193, + "truncated": false, + "block": 1, + "row": 10402 + }, + { + "path": "Preprocessing/Expt2_Processing.Rmd", + "sha256": "0f4f19e8d6f4764f7e67302eb95320fe13e41bf59fe59d044393976e7453a401", + "language": "R", + "lines": 450, + "truncated": false, + "block": 1, + "row": 10517 + }, + { + "path": "Preprocessing/Expt3_Preprocessing.R", + "sha256": "ff689eefd77fbc5cd8182486b0db1f2ea1853815cbb1ebcacf913f7697b636e9", + "language": "R", + "lines": 375, + "truncated": false, + "block": 1, + "row": 10536 + }, + { + "path": "Preprocessing/IntegratingE1E2E3.R", + "sha256": "d679819c94fba8886c40393d4f3765d6616c07ca0ea8734b0e4672e61bd70191", + "language": "R", + "lines": 124, + "truncated": false, + "block": 1, + "row": 10265 + }, + { + "path": "README.md", + "sha256": "7b786a823cad8cb91b6cf8d71cb1de6ac4edbb1dc91f6537d8971e59bef2db5c", + "language": "Text", + "lines": 387, + "truncated": false, + "block": 1, + "row": 12000 + }, + { + "path": "renv/activate.R", + "sha256": "ad17689dc13ef6dce75b1f5bed883e931f239bacd71e84ef57ede143ff6476cf", + "language": "R", + "lines": 1403, + "truncated": false, + "block": 1, + "row": 10598 + } + ] +} \ No newline at end of file diff --git a/manifests/23/github.com__eoinkenny__cw-net-autonomous-driving.json b/manifests/23/github.com__eoinkenny__cw-net-autonomous-driving.json new file mode 100644 index 0000000000000000000000000000000000000000..a10f7140bbd5d828ab0b1398661cd03393580e91 --- /dev/null +++ b/manifests/23/github.com__eoinkenny__cw-net-autonomous-driving.json @@ -0,0 +1,156 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/eoinkenny/cw-net-autonomous-driving", + "url": "https://github.com/EoinKenny/CW-Net-Autonomous-Driving", + "host": "github.com", + "commit": "1df38ff17a7530a732ec7a5f13b756923c4ab777", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE.txt", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.txt", + "sha256": "cb29146c4c1638ca446db0a43910d6ff850aeda01bbb0dc8cfa1f42f9d1a449e", + "language": "License", + "lines": 14, + "truncated": false, + "block": 1, + "row": 2071 + }, + { + "path": "README.md", + "sha256": "f21589f5a30cb0d2670f55a727ee53326d6b049b60b102060e1945a9f129dc6e", + "language": "Text", + "lines": 189, + "truncated": false, + "block": 1, + "row": 11963 + }, + { + "path": "code_ocean_capsule/code/games/carracing.py", + "sha256": "b48ef2eaa82e4b76d350d29814aa7d94cebb01452ef0cffbc524a6e241bfe1c7", + "language": "Python", + "lines": 155, + "truncated": false, + "block": 1, + "row": 7240 + }, + { + "path": "code_ocean_capsule/code/main.py", + "sha256": "13f780ae7a525e2d552d81195545ee78f7825111926cbc18e82f55dfd9ecd8ca", + "language": "Python", + "lines": 412, + "truncated": false, + "block": 1, + "row": 8942 + }, + { + "path": "code_ocean_capsule/code/memory.py", + "sha256": "c9b1833460fb4fbb78f2f18f19d1ce75b461c7c9446aae0fb571a8c6e745a403", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 1, + "row": 5510 + }, + { + "path": "code_ocean_capsule/code/ppo.py", + "sha256": "ac4202bdd98486e8eca88f9d25b294697eecd3bc4d9d0032ba7a4322e5b2b069", + "language": "Python", + "lines": 224, + "truncated": false, + "block": 1, + "row": 7944 + }, + { + "path": "code_ocean_capsule/code/setup.sh", + "sha256": "5bab9c424e2c20b1b92a91eb64d56a98fd01061e0c110b56a7f995f97e805dff", + "language": "Shell", + "lines": 40, + "truncated": false, + "block": 1, + "row": 11641 + }, + { + "path": "original_cwnet_model_files/models.py", + "sha256": "6c9dc7fb361e0644f1addab8d954b4485b311356047a65932ed6ef12095bb28c", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 1, + "row": 7316 + }, + { + "path": "reproduce_paper_results.py", + "sha256": "f295f2584a55b1155a1b7d944c0f4e97f17421108e1296d6785c89c8ac5fd9a9", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 1, + "row": 7449 + }, + { + "path": "scripts/reproduce_SI_LLM_Judge.py", + "sha256": "a52cd2f92b5b6824c90f9cfaa33983e008aab47d872efcb416aaa370a7307349", + "language": "Python", + "lines": 196, + "truncated": false, + "block": 1, + "row": 8638 + }, + { + "path": "scripts/reproduce_SI_cronbach_alpha.py", + "sha256": "c050a7d1cc2547d95cd6a7812a6aea687661478d246df5f9416da9aff4585c65", + "language": "Python", + "lines": 307, + "truncated": false, + "block": 1, + "row": 8912 + }, + { + "path": "scripts/reproduce_figure3.py", + "sha256": "9f2d9a628183dfe06349c41717d41371da5d49c758a808cfca21c79638ccd627", + "language": "Python", + "lines": 377, + "truncated": false, + "block": 1, + "row": 9382 + }, + { + "path": "scripts/reproduce_figureED3.py", + "sha256": "5eca874f7fd9aecc1a3b6205d588f98f3ff5b01f80a2b69ca48c47c99cef91d3", + "language": "Python", + "lines": 197, + "truncated": false, + "block": 1, + "row": 8405 + }, + { + "path": "scripts/reproduce_figureED4.py", + "sha256": "52bfbd9fbb85a9a13538af1c82ab6ec629806c6423ffad6a5a58df8cef8506df", + "language": "Python", + "lines": 294, + "truncated": false, + "block": 1, + "row": 9135 + }, + { + "path": "scripts/reproduce_figureED5_analysis.py", + "sha256": "9814d21d0c0914831a2328fd38a6ac555c698b98b9ece8ad80c73d1b953b4784", + "language": "Python", + "lines": 316, + "truncated": false, + "block": 1, + "row": 9115 + }, + { + "path": "scripts/reproduce_figureED7_analysis.py", + "sha256": "6959b117092581a2ae22f6805a4a58826b0eacc37884f525c5a0f00bcf3db048", + "language": "Python", + "lines": 343, + "truncated": false, + "block": 1, + "row": 9324 + } + ] +} \ No newline at end of file diff --git a/manifests/23/github.com__goliczgenomelab__nemo.json b/manifests/23/github.com__goliczgenomelab__nemo.json new file mode 100644 index 0000000000000000000000000000000000000000..b1a4d4897d5b7d3bdf5512945837c45d85e1a6f2 --- /dev/null +++ b/manifests/23/github.com__goliczgenomelab__nemo.json @@ -0,0 +1,633 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/goliczgenomelab/nemo", + "url": "https://github.com/GoliczGenomeLab/nemo", + "host": "github.com", + "commit": "a2d4894f166c2a7e1fd6c9553de1393d7d37cd41", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "39c2d8ee53769046415e3658a2ee5e768a7575781f25b85673eeb6edfe952737", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2173 + }, + { + "path": "README.md", + "sha256": "cfcc4ddbc5d56d5d46092abf48d6e9845a7bddecf0ca548641c781c50ff6ff88", + "language": "Text", + "lines": 13, + "truncated": false, + "block": 1, + "row": 11782 + }, + { + "path": "model_configs/nemo/get_full_param_set.sh", + "sha256": "1e96e878a9f25653670c58016a312fd3a4189a9f622561d768aced654b6e8eec", + "language": "Shell", + "lines": 3, + "truncated": false, + "block": 1, + "row": 11122 + }, + { + "path": "plots/fig_1.R", + "sha256": "c844fc282635049445aac9cee77a52b0d083bf715a46c14e82a853fc4b5af79e", + "language": "R", + "lines": 322, + "truncated": false, + "block": 1, + "row": 10502 + }, + { + "path": "plots/fig_2.R", + "sha256": "7d9369a49574854b45e84af336f72502596e30ca6290868264b2e5b40bd38b34", + "language": "R", + "lines": 297, + "truncated": false, + "block": 1, + "row": 10445 + }, + { + "path": "plots/fig_3.R", + "sha256": "d0d5e98f82c20bd3a8c04584f8474ad55894837bb2e99a58c285ce46e9b06db7", + "language": "R", + "lines": 187, + "truncated": false, + "block": 1, + "row": 10349 + }, + { + "path": "plots/fig_4.R", + "sha256": "3e27b04f57fb4ea34618f0b7ed9085905627f52770c17c5afbc726ff5111631e", + "language": "R", + "lines": 302, + "truncated": false, + "block": 1, + "row": 10441 + }, + { + "path": "plots/fig_5.R", + "sha256": "7eeab6227a4ec262da4ac336c93858827597438a7463954f97149537e3a60b16", + "language": "R", + "lines": 451, + "truncated": false, + "block": 1, + "row": 10514 + }, + { + "path": "plots/fig_S10.R", + "sha256": "5c121b72d0353a9274dde6f11f61088877243f58db841436010b55fdd28a424a", + "language": "R", + "lines": 137, + "truncated": false, + "block": 1, + "row": 10269 + }, + { + "path": "plots/fig_S11-S40.R", + "sha256": "85bd8433d22f681d4b8cdd2def7def33b0e1f2e20d9694a4e3900afad79c6fe1", + "language": "R", + "lines": 195, + "truncated": false, + "block": 1, + "row": 10337 + }, + { + "path": "plots/fig_S1_S2.R", + "sha256": "a0e9ca84557b8a686477d3a815da475d40d13b3344ab2879299691b154bdd61c", + "language": "R", + "lines": 143, + "truncated": false, + "block": 1, + "row": 10284 + }, + { + "path": "plots/fig_S4.R", + "sha256": "6bfb6c4830ae459ee0a1bb84830e0c24657966196751a8e9f8a676f4524cf5af", + "language": "R", + "lines": 127, + "truncated": false, + "block": 1, + "row": 10263 + }, + { + "path": "plots/fig_S41_S42.R", + "sha256": "d08bcec2a6e00fe42df87441334206923a83dc6a5accc2e9624363d2a975e74e", + "language": "R", + "lines": 420, + "truncated": false, + "block": 1, + "row": 10513 + }, + { + "path": "plots/fig_S43.R", + "sha256": "eb840947e4472439618a4d1588a44bdc40926aee5a75dddc63d128ff306a9092", + "language": "R", + "lines": 59, + "truncated": false, + "block": 1, + "row": 10120 + }, + { + "path": "plots/fig_S6_S7_S8.R", + "sha256": "9511c50d6faf982bd760492772856e84ab085d3905bdaac10db5ae37a3c689c2", + "language": "R", + "lines": 168, + "truncated": false, + "block": 1, + "row": 10330 + }, + { + "path": "plots/fig_S9.R", + "sha256": "ac5d8f18a8b0ce9dfc3fd261bbb8f472901383fb166465c53c19436157abe334", + "language": "R", + "lines": 304, + "truncated": false, + "block": 1, + "row": 10409 + }, + { + "path": "plots/plot_utils.R", + "sha256": "0d16eceb9476f4ecc61eeb4a204dda2926a3e8c7c96324970c80f4a09421afe9", + "language": "R", + "lines": 191, + "truncated": false, + "block": 1, + "row": 10310 + }, + { + "path": "plots/prep_fig4.R", + "sha256": "ba92fc35defa0f85b9a007f77bdfb1ea2eb619f605265d6c2941ada2ca4b3fc5", + "language": "R", + "lines": 105, + "truncated": false, + "block": 1, + "row": 10212 + }, + { + "path": "plots/prep_fig4.sh", + "sha256": "c7de6592740ca86e45aa3f18871bd4bc3c16cf6d7925d596c6f6cb62279d3086", + "language": "Shell", + "lines": 13, + "truncated": false, + "block": 1, + "row": 11398 + }, + { + "path": "scripts/attribution.sh", + "sha256": "0da78c5a13183e3fab52f2c02b04cf12a3ba97253999617160ae407f3e48e14b", + "language": "Shell", + "lines": 77, + "truncated": false, + "block": 1, + "row": 11704 + }, + { + "path": "scripts/downsample_data.sh", + "sha256": "b000e886cca4d583e8b93f863a2e5db66c120f1b63e7d8b79dfc396f73e335f7", + "language": "Shell", + "lines": 50, + "truncated": false, + "block": 1, + "row": 11677 + }, + { + "path": "scripts/eval.sh", + "sha256": "6c449976ff822abd459f555435079bb34215fee0e40b5eb36f513dde3ac6edad", + "language": "Shell", + "lines": 135, + "truncated": false, + "block": 1, + "row": 11734 + }, + { + "path": "scripts/importance.sh", + "sha256": "ef260732c03f7da21dc455527aa589dcd7494d97645b81b17ce0c182ab7e224f", + "language": "Shell", + "lines": 63, + "truncated": false, + "block": 1, + "row": 11698 + }, + { + "path": "scripts/motif_insertion_pipeline.sh", + "sha256": "3d0bbf5bfe334b303a37c47a11bbb299cd10d04452ecabd6288268bc2dcc32a2", + "language": "Shell", + "lines": 117, + "truncated": false, + "block": 1, + "row": 11740 + }, + { + "path": "scripts/nemo/attribution/attribution.py", + "sha256": "18e04b6b19be1e8fb5cef2edb999f52996b7f66cecf4a97c2376790690fe7fa4", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 1, + "row": 7507 + }, + { + "path": "scripts/nemo/attribution/concat_attribs.py", + "sha256": "23775c63ba6eb7cbb140e763d5ff9c92eb730a542109974e77f795316b19a3cb", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 1, + "row": 7038 + }, + { + "path": "scripts/nemo/attribution/get_full_importance.py", + "sha256": "825870bc0c70ef917f1597cf995692b10aab711128b6f0ac2fd6f8b230b753e6", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 1, + "row": 7397 + }, + { + "path": "scripts/nemo/attribution/get_trimmed_importance.py", + "sha256": "814a5aaa0caaefcb49c51f9e2729c5e5ad6c1faf48e639cb79ebd19cd8a00841", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 1, + "row": 7360 + }, + { + "path": "scripts/nemo/eval/cat_preds.sh", + "sha256": "c0f52efe029e93bb81cc8b18df42a7a49d14bf178e4a6841f92bcdbc2b19c5f3", + "language": "Shell", + "lines": 56, + "truncated": false, + "block": 1, + "row": 11689 + }, + { + "path": "scripts/nemo/eval/eval.py", + "sha256": "e79f5e560cda401a94006df85fa18626d7e2ca375782682ef02589b80327531c", + "language": "Python", + "lines": 312, + "truncated": false, + "block": 1, + "row": 8719 + }, + { + "path": "scripts/nemo/eval/get_expression_class_lists.R", + "sha256": "16f55977be327bbae07dceb8b0e1ca9930538426b5415a25263963f6d066ed31", + "language": "R", + "lines": 73, + "truncated": false, + "block": 1, + "row": 10160 + }, + { + "path": "scripts/nemo/eval/get_rsq_matrix.R", + "sha256": "e3056a6a50871fbaf16d210e887cb230fe866621e12d91ea26ad79912a8985df", + "language": "R", + "lines": 163, + "truncated": false, + "block": 1, + "row": 10338 + }, + { + "path": "scripts/nemo/eval/over_under_pred.R", + "sha256": "3e162ce2929f018fdecfc3b2bcb3fd03428452203b4e56331e0131dcbef70520", + "language": "R", + "lines": 72, + "truncated": false, + "block": 1, + "row": 10150 + }, + { + "path": "scripts/nemo/hyperparam_tuning/final_touches.py", + "sha256": "c613a368326b21db210d5c32c7f2f2ca22bd116faa641ccd3e539e89c8771d70", + "language": "Python", + "lines": 355, + "truncated": false, + "block": 1, + "row": 8928 + }, + { + "path": "scripts/nemo/hyperparam_tuning/finetune_architecture.py", + "sha256": "eedae5180c0ce2d58f1fd4269179694f9e36edaaffc59b90ec6353d960928c6a", + "language": "Python", + "lines": 421, + "truncated": false, + "block": 1, + "row": 9118 + }, + { + "path": "scripts/nemo/hyperparam_tuning/finetune_learning.py", + "sha256": "aec4710efcc167d358209aa13992a204701015659c9574746b9c7ebe4ea3b799", + "language": "Python", + "lines": 340, + "truncated": false, + "block": 1, + "row": 8897 + }, + { + "path": "scripts/nemo/hyperparam_tuning/get_completed_trials.py", + "sha256": "56249b6cb27736c77e7943839de24e29f023f01fe75b1793e47c0d3a10df004c", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 1, + "row": 6194 + }, + { + "path": "scripts/nemo/hyperparam_tuning/optimize_architecture.py", + "sha256": "38b7a118a8a48deba686a9d3790373828ad054ec0877a275a997c096c4534a9d", + "language": "Python", + "lines": 503, + "truncated": false, + "block": 1, + "row": 9362 + }, + { + "path": "scripts/nemo/hyperparam_tuning/optimize_learning.py", + "sha256": "643cc9d96cf12e8a1316e7bd4277143098715c849f488377ab34abcf8d5ca9fd", + "language": "Python", + "lines": 331, + "truncated": false, + "block": 1, + "row": 8878 + }, + { + "path": "scripts/nemo/hyperparam_tuning/validate_architecture.py", + "sha256": "2bbd05a40d085a7d81653029afa0c96cef19c4275c3f8426e226a1c09a23cebc", + "language": "Python", + "lines": 426, + "truncated": false, + "block": 1, + "row": 9038 + }, + { + "path": "scripts/nemo/model_stats.py", + "sha256": "752a641d75a6b368fd3e5f18271dd69ce48a5c76b7050889a02bfd8f2a18307d", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 1, + "row": 6261 + }, + { + "path": "scripts/nemo/mutation/mutate_sequences.py", + "sha256": "97a407ac864da7bf5c9989c42e90beb4ee22ea8f68e88fc0789e28d9c27e8630", + "language": "Python", + "lines": 247, + "truncated": false, + "block": 1, + "row": 8714 + }, + { + "path": "scripts/nemo/preprocessing/clean_up_expression_matrix.R", + "sha256": "73dcad901557c0f08d2c04ff0f68f3aae1c019b12e570e9e59e61eb50b0bfaf5", + "language": "R", + "lines": 75, + "truncated": false, + "block": 1, + "row": 10149 + }, + { + "path": "scripts/nemo/preprocessing/csv_to_fasta.py", + "sha256": "e7cfb0ebb36c752b279f00ba0a36158dccb88dc24a826f7a3a604a145ec57b2f", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 1, + "row": 7187 + }, + { + "path": "scripts/nemo/preprocessing/downsample_data.py", + "sha256": "8122ef5ba8078bdac803a6983416c5666a92e63fa3aa90b3610e5cd9112e4c71", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 1, + "row": 6512 + }, + { + "path": "scripts/nemo/preprocessing/get_len_gc.py", + "sha256": "bbecd534f24d3c15ab004b325248605897ea1aa37bd8f873140fc11e3be1fbd3", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 1, + "row": 6936 + }, + { + "path": "scripts/nemo/preprocessing/get_median.R", + "sha256": "7cc21def3555785be0008e538ff3108b7b41acc566ee213404d854f6b645e882", + "language": "R", + "lines": 71, + "truncated": false, + "block": 1, + "row": 10141 + }, + { + "path": "scripts/nemo/preprocessing/get_promoter_terminator.py", + "sha256": "71f729f35d4e3a3802ae0c3a5cd53ba60aef1b71d5acb641df6f35a41597370b", + "language": "Python", + "lines": 210, + "truncated": false, + "block": 1, + "row": 8532 + }, + { + "path": "scripts/nemo/preprocessing/get_rep_avrg.R", + "sha256": "9aa59bf1f36c4176caf100cdc15cf9b0d8967e459912d03b9897075a4f40bd61", + "language": "R", + "lines": 67, + "truncated": false, + "block": 1, + "row": 10142 + }, + { + "path": "scripts/nemo/preprocessing/gff2bed.py", + "sha256": "551cbc938e8c1e64089a73c52145e438e531724bb5ad241b43a056cece72b43e", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 1, + "row": 6287 + }, + { + "path": "scripts/nemo/preprocessing/graphpart_prep_only_expressed.R", + "sha256": "3e946e35789431685e3441724f51a16d4ca4a0e23f7cf527ea0bc697c91bfbe9", + "language": "R", + "lines": 106, + "truncated": false, + "block": 1, + "row": 10261 + }, + { + "path": "scripts/nemo/preprocessing/merge_data.py", + "sha256": "3c4ef15046cb91abad90d435b9c8fee5abd9489e4ce5ec2320e81d6cacb8aa7a", + "language": "Python", + "lines": 304, + "truncated": false, + "block": 1, + "row": 8590 + }, + { + "path": "scripts/nemo/preprocessing/multiline_to_singleline_fasta.sh", + "sha256": "cc7d60c24de302ab19da435ac84e6e79b1e6c87a6280230217a20d6f7cd23f6a", + "language": "Shell", + "lines": 44, + "truncated": false, + "block": 1, + "row": 11671 + }, + { + "path": "scripts/nemo/preprocessing/remove_low_corr_samples.R", + "sha256": "41ca403ac28e85827c3c9fd70c5765e33e9d82bd175f59224f7f94371866d4e7", + "language": "R", + "lines": 92, + "truncated": false, + "block": 1, + "row": 10163 + }, + { + "path": "scripts/nemo/preprocessing/setup_folds.py", + "sha256": "6dc7c67ada511bdd7c39a0b663b91801be04df17834041f3f020ded697c00fd8", + "language": "Python", + "lines": 234, + "truncated": false, + "block": 1, + "row": 8517 + }, + { + "path": "scripts/nemo/preprocessing/setup_full.py", + "sha256": "37179634a572588a46a7fec5aa440d4a78e56cc7202cbe595895b1b6ffd3bb09", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 1, + "row": 7203 + }, + { + "path": "scripts/nemo/preprocessing/shuffle_graphpart_clusters.py", + "sha256": "afbd8d0c1b5684733838cf312b39700ef23b90a757d735e3ae9f8be18536e55d", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 1, + "row": 6342 + }, + { + "path": "scripts/nemo/run_training.py", + "sha256": "314aad2778335f42c7c2df029f89682556492a335ec64f24b36670f98f788360", + "language": "Python", + "lines": 430, + "truncated": false, + "block": 1, + "row": 9106 + }, + { + "path": "scripts/nemo/utils/attrib_utils.py", + "sha256": "a25a733da12e30bb48ab4693cd69e46598fbbb03b657ad1238564b206fa695a4", + "language": "Python", + "lines": 279, + "truncated": false, + "block": 1, + "row": 8841 + }, + { + "path": "scripts/nemo/utils/eval_utils.R", + "sha256": "fb98b30955067257f417da3a3c03456272c4561155d68bcd235978902fb50d5c", + "language": "R", + "lines": 90, + "truncated": false, + "block": 1, + "row": 10168 + }, + { + "path": "scripts/nemo/utils/model_utils.py", + "sha256": "fe893961c963532939f030f58a92a7bd719dfeeced91831095468026cfc14f7c", + "language": "Python", + "lines": 678, + "truncated": false, + "block": 1, + "row": 9538 + }, + { + "path": "scripts/prep_Athaliana.sh", + "sha256": "be867226f8840d46e9ce40011ef3441ae86ae06972e55a4de96adb6400a3d327", + "language": "Shell", + "lines": 163, + "truncated": false, + "block": 1, + "row": 11741 + }, + { + "path": "scripts/prep_Bnapus.sh", + "sha256": "eb64bc4fd3f243e0337f706b51e49f9066fb2b153eb3ee2383d140c0f378094e", + "language": "Shell", + "lines": 174, + "truncated": false, + "block": 1, + "row": 11743 + }, + { + "path": "scripts/run_setup.sh", + "sha256": "c8ab43614e647ab973b2bf1db1855dacbfec9695de1ce2f1f928b4f0ff4636ca", + "language": "Shell", + "lines": 101, + "truncated": false, + "block": 1, + "row": 11718 + }, + { + "path": "scripts/setup_files.sh", + "sha256": "50ca22e7b9a325d15ea385c9271278199c61c4b8d9e09eb9b959799c2e372bd2", + "language": "Shell", + "lines": 221, + "truncated": false, + "block": 1, + "row": 11746 + }, + { + "path": "scripts/train.sh", + "sha256": "16b87f2f2e7390a52784bd66307dbc7963bda775ef00f86a9e9172297def4820", + "language": "Shell", + "lines": 77, + "truncated": false, + "block": 1, + "row": 11700 + }, + { + "path": "scripts/train_Athaliana.sh", + "sha256": "194fce5c201ff7f6418bb49600b4c4f92a458271462e85370776115c131fd14b", + "language": "Shell", + "lines": 56, + "truncated": false, + "block": 1, + "row": 11673 + }, + { + "path": "scripts/train_Bnapus.sh", + "sha256": "258b2892b0c0626be66612e597ebb9b4ca7cf29fbdb68c8c1025468755648047", + "language": "Shell", + "lines": 80, + "truncated": false, + "block": 1, + "row": 11701 + }, + { + "path": "scripts/tune_hyperparams.sh", + "sha256": "98173bee60b4e18729af9282ed7f82faa40e07878471294bc54554819bc4a071", + "language": "Shell", + "lines": 96, + "truncated": false, + "block": 1, + "row": 11722 + } + ] +} \ No newline at end of file diff --git a/manifests/23/github.com__tommyclausner__laminarfmriv2.json b/manifests/23/github.com__tommyclausner__laminarfmriv2.json new file mode 100644 index 0000000000000000000000000000000000000000..2cb4ed86a37a1e1180ee18df8f99aeb210f4fc11 --- /dev/null +++ b/manifests/23/github.com__tommyclausner__laminarfmriv2.json @@ -0,0 +1,1839 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/tommyclausner/laminarfmriv2", + "url": "https://github.com/TommyClausner/laminarfMRIv2", + "host": "github.com", + "commit": "f076311ff3dd4fa924067657247603e111f615fe", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": ".cleanScriptsFolder.sh", + "sha256": "3213b6ae331aa539fa1ac3268fbc6176fbcce0892d001400a23845c4704a0dfd", + "language": "Shell", + "lines": 7, + "truncated": false, + "block": 1, + "row": 11124 + }, + { + "path": ".collectModelData.sh", + "sha256": "b33c5ccc602cda420cc0f7f99f546eab15450c3846859794b02f2b0f0ff0e9b3", + "language": "Shell", + "lines": 25, + "truncated": false, + "block": 1, + "row": 11589 + }, + { + "path": ".distributeElectrodesData.sh", + "sha256": "8df7c5214e46235971337afa864231a644280e2fc828329221db7d1cf2212f32", + "language": "Shell", + "lines": 18, + "truncated": false, + "block": 1, + "row": 11404 + }, + { + "path": ".transferOldStructure.sh", + "sha256": "874d1a72c9c8aed22a31288d117c7cdb728448e9f15035fd10d7f5e88653f654", + "language": "Shell", + "lines": 31, + "truncated": false, + "block": 1, + "row": 11575 + }, + { + "path": "LICENSE", + "sha256": "39d3b83ac1b96739f102b2d371c0dcfab1e3cbd7695d74f553e9fdfa261d5afd", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2130 + }, + { + "path": "README.md", + "sha256": "d9d71c7cee948426622925e2eaa3105600a9f190b1a7e626fa7b80d8f5e288ef", + "language": "Text", + "lines": 36, + "truncated": false, + "block": 1, + "row": 11872 + }, + { + "path": "constructScript.sh", + "sha256": "a18986aa40a82fdb9018aec5841ef9f3c5c02c341c7fb26ebae996a9e3855cd0", + "language": "Shell", + "lines": 119, + "truncated": false, + "block": 1, + "row": 11717 + }, + { + "path": "external/artRej.m", + "sha256": "132bfdcbf1202d7fd9e99f778793d9776ee2e61451611b9edde8396c73cd297d", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 1, + "row": 2706 + }, + { + "path": "external/blinks_combined.m", + "sha256": "8b8f021e5e63a2a4e031bf828d1299ebfb92605fab4ce5369526c6b50c017777", + "language": "MATLAB", + "lines": 62, + "truncated": false, + "block": 1, + "row": 3039 + }, + { + "path": "external/detect_blinks_ICA.m", + "sha256": "e1d774f9925af4cfb952340eb1611260d342768ae5cff25bdb6ed80d666dbb11", + "language": "MATLAB", + "lines": 99, + "truncated": false, + "block": 1, + "row": 3388 + }, + { + "path": "external/do_art_chnl_rej.m", + "sha256": "7b0956154cfe5e9353fa3963b194dd15b446be76766f39c5877a7fe6df3448b0", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 1, + "row": 2751 + }, + { + "path": "external/extract_eye_trials.m", + "sha256": "030f90ecaf53d9e9e52d7351bbdd30feafe2ca9755d0b9d31215dab7964ea630", + "language": "MATLAB", + "lines": 112, + "truncated": false, + "block": 1, + "row": 3415 + }, + { + "path": "external/selected_eeg_blinks_detection.m", + "sha256": "a0efc2fabda1ab63982daeaf1ce54f2f7388a6ce75e1ef70dc2c1bc3429c3f49", + "language": "MATLAB", + "lines": 62, + "truncated": false, + "block": 1, + "row": 2988 + }, + { + "path": "fmriRegAnalysis/A_control_posT_Aspec.m", + "sha256": "f5721041f3b767fd8d57927e5eaabf56bb4fa4423ebb41284a932437798cf655", + "language": "MATLAB", + "lines": 531, + "truncated": false, + "block": 1, + "row": 4312 + }, + { + "path": "fmriRegAnalysis/a2_confound_and_hrf_regressors.m", + "sha256": "dd1fc7a62eb5df5cfbf12644434cc44e1012a48e72537960fc482697def85cca", + "language": "MATLAB", + "lines": 296, + "truncated": false, + "block": 1, + "row": 4121 + }, + { + "path": "fmriRegAnalysis/a_confound_and_task_regressors.m", + "sha256": "bc2cee7667d9d086b16264d5cd06b3be3c00e9f13dfb6edc76f84a0c42832614", + "language": "MATLAB", + "lines": 276, + "truncated": false, + "block": 1, + "row": 4090 + }, + { + "path": "fmriRegAnalysis/b_first_level_contrasts.m", + "sha256": "4025cd66adb3e0cc6cb99f2c2ef991bd88ee73f2f3e39ec0f6832829707c4cae", + "language": "MATLAB", + "lines": 116, + "truncated": false, + "block": 1, + "row": 3593 + }, + { + "path": "fmriRegAnalysis/c_eeg_plot_power.m", + "sha256": "2cec3dbf7d41cded2acf7ebb731a71e8040bf09f971654e06d26652d9bd0742d", + "language": "MATLAB", + "lines": 145, + "truncated": false, + "block": 1, + "row": 3662 + }, + { + "path": "fmriRegAnalysis/c_eeg_power_regressors.m", + "sha256": "0cf99419b9b5c8bde956ec172a0279eb33bc19e257e13a708ae4229308b00e78", + "language": "MATLAB", + "lines": 397, + "truncated": false, + "block": 1, + "row": 4235 + }, + { + "path": "fmriRegAnalysis/d2_separate_analysis.m", + "sha256": "630fbe88a20576de50381db6a2b94d6dc2ff72dd66806797e5ffbda1612d90df", + "language": "MATLAB", + "lines": 501, + "truncated": false, + "block": 1, + "row": 4248 + }, + { + "path": "fmriRegAnalysis/dAllSubjectData.m", + "sha256": "92d0caeca3a733985688528c7f6bac13d12a44ff0c5320c3dda2d5a336c4d82d", + "language": "MATLAB", + "lines": 151, + "truncated": false, + "block": 1, + "row": 3675 + }, + { + "path": "fmriRegAnalysis/dClusterStats.m", + "sha256": "15bfcab733075ebc5f0a7887c84407d8567790198b012c37f543fb73c4633e95", + "language": "MATLAB", + "lines": 365, + "truncated": false, + "block": 1, + "row": 4145 + }, + { + "path": "fmriRegAnalysis/dSeparateAnalysis.m", + "sha256": "18c403abbf500373059c96822ed684f911d9639147d7195670620225dcea8b38", + "language": "MATLAB", + "lines": 125, + "truncated": false, + "block": 1, + "row": 3779 + }, + { + "path": "fmriRegAnalysis/dSeparateAnalysisAct.m", + "sha256": "7be83bf73ebd1c2c28e3ed7110251410e41de2f7f1dc0ca5d89eb86133679eac", + "language": "MATLAB", + "lines": 109, + "truncated": false, + "block": 1, + "row": 3671 + }, + { + "path": "fmriRegAnalysis/d_fmri_feature_signals_per_layer.m", + "sha256": "7dd5b52096117af71430c1c5d375a867e3beabcdf9a260365942fc1f2ab77a46", + "language": "MATLAB", + "lines": 123, + "truncated": false, + "block": 1, + "row": 3760 + }, + { + "path": "fmriRegAnalysis/eHRFbetas.m", + "sha256": "56e70a88b7070f80a97e11de9ff00391a8b69f7db13b29fb54cef0aa3599131a", + "language": "MATLAB", + "lines": 165, + "truncated": false, + "block": 1, + "row": 3981 + }, + { + "path": "fmriRegAnalysis/e_fmri_betas_feature_signal.m", + "sha256": "ee1a85b70bf248b3b2c888acdb0697c1ec285d309cb4005fc78c6ec33230a8f7", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 1, + "row": 3075 + }, + { + "path": "fmriRegAnalysis/f_eeg_betas_feature_signal.m", + "sha256": "716d1615256dcd4ff7b421405b63f0194508aa74e3a51badc6f7c126733318be", + "language": "MATLAB", + "lines": 101, + "truncated": false, + "block": 1, + "row": 3693 + }, + { + "path": "fmriRegAnalysis/final_plots.m", + "sha256": "f6bc9d2edb03667dce752073a01a0789c0f81024510fa0a8a72335ee1d604003", + "language": "MATLAB", + "lines": 1234, + "truncated": false, + "block": 1, + "row": 4331 + }, + { + "path": "fmriRegAnalysis/fmri_correlations.m", + "sha256": "970602aded8f062faaeae846d265f3e4323f4d202104905f5ceeaab74cc08408", + "language": "MATLAB", + "lines": 171, + "truncated": false, + "block": 1, + "row": 3782 + }, + { + "path": "fmriRegAnalysis/fmri_estimate_hrf.m", + "sha256": "fd06f92d3bed9e6da9ac6fbaf673c92e1c4d3516044f04f1951b9492ca8e319c", + "language": "MATLAB", + "lines": 173, + "truncated": false, + "block": 1, + "row": 3837 + }, + { + "path": "fmriRegAnalysis/g_average_betas.m", + "sha256": "1df47a70708df80339e8d6142fa7253845296e0c9fc8c7fbbe1598f477eb542b", + "language": "MATLAB", + "lines": 111, + "truncated": false, + "block": 1, + "row": 3664 + }, + { + "path": "fmriRegAnalysis/get_eegfmri_all_subject_data.m", + "sha256": "bafa7cb2b1ff3cedd8f30dc3a3a7e6f7bdf53b41648201661109023abf89a578", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 1, + "row": 2818 + }, + { + "path": "fmriRegAnalysis/h_make_t_stat_eeg_over_subjects.m", + "sha256": "dca45c31187582bcafbd5536a75553b6ae6c436342135b735fb315592649174a", + "language": "MATLAB", + "lines": 287, + "truncated": false, + "block": 1, + "row": 4123 + }, + { + "path": "fmriRegAnalysis/i_make_t_stat_fmri_over_subjects.m", + "sha256": "26b117866c070147fcacf5e438871b3be5b2aac532ceb6b59ad8e7edb844d1f9", + "language": "MATLAB", + "lines": 102, + "truncated": false, + "block": 1, + "row": 3448 + }, + { + "path": "fmriRegAnalysis/j_check_voxel_neighborhood.m", + "sha256": "e1cf20d5221c714272a4aab66d3c40595f51c48e5f5175d50d04e77e0fccaf0e", + "language": "MATLAB", + "lines": 75, + "truncated": false, + "block": 1, + "row": 3469 + }, + { + "path": "fmriRegAnalysis/makeBOLDresults4surf.m", + "sha256": "1896d246e0b6efee8a106f2bf52948c0730d6604d3c52d29a6058f5fcab14af2", + "language": "MATLAB", + "lines": 173, + "truncated": false, + "block": 1, + "row": 3971 + }, + { + "path": "fmriRegAnalysis/overview_signal_fmri.m", + "sha256": "24d57d22a9ffde08653cccbf0853445351d04691ca4ab7a046197883cb9183f7", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 1, + "row": 3243 + }, + { + "path": "fmriRegAnalysis/plot_surfaces.sh", + "sha256": "7bdbdee7518792c7f9b08eb1d16423efa44d5033862db6c8407b0688444c46a8", + "language": "Shell", + "lines": 44, + "truncated": false, + "block": 1, + "row": 11623 + }, + { + "path": "fmriRegAnalysis/scatterbar3.m", + "sha256": "b575eca956a81c346155864152cacf56933ce21f660db37f04be790129a48ca8", + "language": "MATLAB", + "lines": 86, + "truncated": false, + "block": 1, + "row": 3313 + }, + { + "path": "fmriRegAnalysis/sim_procedure.m", + "sha256": "e897c48597b814e5a0523ece0c98fafaf22c72dc1f606f2927b8ef8936c2ce39", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 1, + "row": 3040 + }, + { + "path": "fmriRegAnalysis/tc_check_voxel_neighborhood.m", + "sha256": "64ab171baa7d098edf06f24b309f839909a67fc984b202100937735978103f07", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 1, + "row": 2845 + }, + { + "path": "fmriRegAnalysis/tc_compress_files.m", + "sha256": "2fd1ecd77fdd4e0230c3b71d5caf1267eb57b21e91925d28b5e7cbbd6cc4e950", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 1, + "row": 2633 + }, + { + "path": "fmriRegAnalysis/tc_conv_parmod_hrf.m", + "sha256": "86c833bf3a7a513a4b2f1e6e4afc19cd0fd256d63668825bb083cbd2da3306cb", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 1, + "row": 3293 + }, + { + "path": "fmriRegAnalysis/tc_conv_regs.m", + "sha256": "e67145a53cef38c565168f2c8fa71d516ef64984d047086f44b578779d6d04cc", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 1, + "row": 2981 + }, + { + "path": "fmriRegAnalysis/tc_data2nii.m", + "sha256": "c1ce770775e66b7963204672cfb376f6f65ac5a877349ccb2f7429daeae460dd", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 1, + "row": 2552 + }, + { + "path": "fmriRegAnalysis/tc_decomposeMatrix.m", + "sha256": "3a4f535306d80499112a821f5f06850be80cc0198b8fc1a0b0aa3cf744d936f4", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 1, + "row": 2601 + }, + { + "path": "fmriRegAnalysis/tc_ez_diffusion.m", + "sha256": "843e14f9d8f306c2ea799c8e116ab6b3ec5cba6a32d8b43f97a9789be9383a69", + "language": "MATLAB", + "lines": 70, + "truncated": false, + "block": 1, + "row": 3086 + }, + { + "path": "fmriRegAnalysis/tc_fit_feature_template.m", + "sha256": "df0fcfb6b27de5a7d69f4c8f677ed9ad2fa22c1f6eced38bc3cd79882d0b0571", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 1, + "row": 2330 + }, + { + "path": "fmriRegAnalysis/tc_get_event_times_from_eeg.m", + "sha256": "662d8ddfc966fb050c1b0f1af650d585416479573475cf36bfcf122340b1d958", + "language": "MATLAB", + "lines": 75, + "truncated": false, + "block": 1, + "row": 3397 + }, + { + "path": "fmriRegAnalysis/tc_get_events_from_trigger_values.m", + "sha256": "10cd02c351c7f5e45d1431ccff8e39cc21a9a7b9e13451dcc440b2f6b28329e6", + "language": "MATLAB", + "lines": 77, + "truncated": false, + "block": 1, + "row": 3405 + }, + { + "path": "fmriRegAnalysis/tc_get_layer_signal.m", + "sha256": "deab49268088632182fe1065de5c1fe55cfd3e3c64fbaca843badcff96c52a12", + "language": "MATLAB", + "lines": 186, + "truncated": false, + "block": 1, + "row": 3879 + }, + { + "path": "fmriRegAnalysis/tc_get_reaction_times.m", + "sha256": "db26769df4a983883f30b447311cc0ad366e496a072adc747dc9ae11aa8a9b83", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 1, + "row": 2900 + }, + { + "path": "fmriRegAnalysis/tc_get_res_inds.m", + "sha256": "44bdeb54b3b5e4058956be8142120b04644756907287c478a32fceb828414a05", + "language": "MATLAB", + "lines": 287, + "truncated": false, + "block": 1, + "row": 4116 + }, + { + "path": "fmriRegAnalysis/tc_interpolate_compartments.m", + "sha256": "5b975483c95a2e0afbee617a9fe39e817a72fb0df65bdc64158724e4bc9dae76", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 1, + "row": 2637 + }, + { + "path": "fmriRegAnalysis/tc_make_contrast_mask.m", + "sha256": "7419644a7f41c546723e1838f68fc7ed8a373d1886efb376fccc23804c39a958", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 1, + "row": 3108 + }, + { + "path": "fmriRegAnalysis/tc_make_feature_template.m", + "sha256": "8c2792fca31342a96c10e1476ea335871edc20d1c747a9b8a64fff49ccbf083a", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 1, + "row": 2483 + }, + { + "path": "fmriRegAnalysis/tc_make_reg_analysis_defaults.m", + "sha256": "143b558a12e7c06ebda4c046e5cf09274a1fcd5166501bd8f1bd8dc859938ec3", + "language": "MATLAB", + "lines": 255, + "truncated": false, + "block": 1, + "row": 4043 + }, + { + "path": "fmriRegAnalysis/tc_make_reg_setups.m", + "sha256": "8bd7ad0a9b15c74a47a436d9a835e15c15364acd11c72e0884aae0085d182ddb", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 1, + "row": 2694 + }, + { + "path": "fmriRegAnalysis/tc_make_sliding_windows.m", + "sha256": "321e85096eb1473a9ace9247d3d3d21e77a1d67f21ddaf01e54f54f883045846", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 1, + "row": 2730 + }, + { + "path": "fmriRegAnalysis/tc_make_spm_contrast_batch.m", + "sha256": "fe2c06a956711b0e8e3f685d953047882a964d5e1698b43d0f9bd902ea36e2a3", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 1, + "row": 2504 + }, + { + "path": "fmriRegAnalysis/tc_make_spm_fmri_batch.m", + "sha256": "a4c8f6bcfbe821ab1aca2f82205b4f1003faaef30fcf8923b1425952293cf9d1", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 1, + "row": 2955 + }, + { + "path": "fmriRegAnalysis/tc_move_spm_results.m", + "sha256": "612466f0bb4ed120b18cb64fdb3883c5bf8555d4c7f66f7018a86b9c8a628a49", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 1, + "row": 2414 + }, + { + "path": "fmriRegAnalysis/tc_num_volumes.m", + "sha256": "1747f63c027c32b4406ab5bbf99c55c86f45fbbe6560d1856a63307b0dc4920d", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 1, + "row": 2668 + }, + { + "path": "fmriRegAnalysis/tc_perform_eegfmri_regression.m", + "sha256": "144c0630a4e90f9d8cadf520d06af49eff345917d9bed5d04df9932238ef2cfe", + "language": "MATLAB", + "lines": 134, + "truncated": false, + "block": 1, + "row": 3702 + }, + { + "path": "fmriRegAnalysis/tc_reg_middle_volume_index.m", + "sha256": "f798722628055d214e1bf465cbe6ac4e1a2d1a1a87d56c99cc7ffe5c91bf49d2", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 1, + "row": 2894 + }, + { + "path": "fmriRegAnalysis/tc_regress_out_confounds.m", + "sha256": "574d0c2640b4aa6c128cc4df07088eca6bc3b99620b1501f7919b71557879d0a", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 1, + "row": 2453 + }, + { + "path": "fmriRegAnalysis/tc_show_contour_on_slice.m", + "sha256": "13628769c17714497644a8b5f7bb838a77c0afba0d133809bf53330b4889c933", + "language": "MATLAB", + "lines": 135, + "truncated": false, + "block": 1, + "row": 3657 + }, + { + "path": "fmriRegAnalysis/tc_show_single_boundary_frame.m", + "sha256": "ed21a5be65513153c65f44528da04bb149d34820ae4387124416a868dbc836c1", + "language": "MATLAB", + "lines": 130, + "truncated": false, + "block": 1, + "row": 3575 + }, + { + "path": "fmriRegAnalysis/tc_source_cluster_fieldtrip.m", + "sha256": "c0f25d5b62da20c7a7b3318a9029f39027ea2345d62e738ad0dd7f2beba41c15", + "language": "MATLAB", + "lines": 243, + "truncated": false, + "block": 1, + "row": 3801 + }, + { + "path": "fmriRegAnalysis/tc_tkr2scanner.m", + "sha256": "876058581a635d9d39003d6814e98481e61270eace14f9eea5cf048d148327b9", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 1, + "row": 2454 + }, + { + "path": "fmriRegAnalysis/tc_turbo_map.m", + "sha256": "6bccd02ef8e00e9bce2038a9a71dbf609062e5a3b9f0deb937df6eb5daad1b86", + "language": "MATLAB", + "lines": 261, + "truncated": false, + "block": 1, + "row": 3927 + }, + { + "path": "fmriRegAnalysis/tc_wrapper_fssurf2fsnifti.m", + "sha256": "7757509eb3d049257159a33ef2afb9cb0a622a1695629db94a57e40be668dd41", + "language": "MATLAB", + "lines": 9, + "truncated": false, + "block": 1, + "row": 2471 + }, + { + "path": "fmriRegAnalysis/tc_wrapper_nifti2surf.m", + "sha256": "10ceedb34d6b6c1f0510ee43a40a289e71e2bbb5d111aa2be7a2b629ac4cca8b", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 1, + "row": 2867 + }, + { + "path": "fmriRegAnalysis/tc_zscore.m", + "sha256": "652dceb89a88720375504d77a12eb2b217d216dbeea0f261d760195a4cd71510", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 1, + "row": 2336 + }, + { + "path": "getToolboxes.sh", + "sha256": "134826fe4466fa4fc4a6d915caf6ad6432ab0eb124ca8fb903497eb655530674", + "language": "Shell", + "lines": 125, + "truncated": false, + "block": 1, + "row": 11659 + }, + { + "path": "laminarEEGfMRI.sh", + "sha256": "ff902d2251617da84569aefff04717ad2e3a56781f045c9a2d4ce5dddcc631d2", + "language": "Shell", + "lines": 38, + "truncated": false, + "block": 1, + "row": 11588 + }, + { + "path": "legacy/thesis_figures.m", + "sha256": "4a2f6baac407ca7b6fd99150b1e97576d124f44d0e5102f5ff3dfd96a6998773", + "language": "MATLAB", + "lines": 267, + "truncated": false, + "block": 1, + "row": 4162 + }, + { + "path": "legacy/thesis_figures_compute.sh", + "sha256": "12a665c1d4f35b355c6bf0ef94d61306aef43ff400fd5d1ed4c9cd26f3e2289a", + "language": "Shell", + "lines": 13, + "truncated": false, + "block": 1, + "row": 11176 + }, + { + "path": "makeNewSubject.sh", + "sha256": "6d33de73f32ea54471ca3ea82989015689886874224daf548bafca70e7bb4569", + "language": "Shell", + "lines": 71, + "truncated": false, + "block": 1, + "row": 11674 + }, + { + "path": "python/EEG-fMRI_alternative_figures.py", + "sha256": "a0551c03a03cc8e5e8093a8f6394f91ede9a051a36b8e974bcc5a8081d47a355", + "language": "Python", + "lines": 740, + "truncated": false, + "block": 1, + "row": 9493 + }, + { + "path": "python/alpha_analysis.py", + "sha256": "e53eba33067aa72300a78e547d1db013925485e189d07b18f657f5eed70f4550", + "language": "Python", + "lines": 248, + "truncated": false, + "block": 1, + "row": 8467 + }, + { + "path": "python/alpha_beh_analysis.py", + "sha256": "baae10690b907809b224db31862ffe23e93e731736b474a5962335f38f6b4b13", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 1, + "row": 6545 + }, + { + "path": "python/motion.py", + "sha256": "f9d02e72386a34901b5e8397fefc3387f132c68cadceaf439083f65fc8cccaa7", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 1, + "row": 7009 + }, + { + "path": "python/tsnr.py", + "sha256": "4d01494abe1a73c8dc2255aa354bfd7f3e1bfdb34f780ad6e4b0569371af94bd", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 1, + "row": 5960 + }, + { + "path": "python_scripts/fmriMotionCorrection.py", + "sha256": "69336ee3c0595d92132b43c66275b2e24e62e93d8b2dba00482b3927ee810eac", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 1, + "row": 5500 + }, + { + "path": "python_scripts/laminarfMRI.py", + "sha256": "830137ba2297749cc1bb31748db1ea356378d315a50bb0b511ed8ea709b9bd27", + "language": "Python", + "lines": 193, + "truncated": false, + "block": 1, + "row": 7819 + }, + { + "path": "python_scripts/optimize_masks.py", + "sha256": "07179ff10830cb26c9ea76d10f2390b6715f84713642239713f4e4b281108f4d", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 1, + "row": 6191 + }, + { + "path": "python_scripts/plot_eeg_power.py", + "sha256": "982b2f216fffd488994a3858d9cc8d3dadfcd710617d7700f9719d30870f044a", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 1, + "row": 5824 + }, + { + "path": "python_scripts/plot_from_mat.py", + "sha256": "5cc64cc95e9a7e8709f26bea99e4fc1de9eec67be67a53b8c1302054a6cee81e", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 1, + "row": 7306 + }, + { + "path": "qsub2slurm.sh", + "sha256": "ef0b6e9d682b5b1ab79f3d6f52d2e3a4c00c676a1353b3f35df645749f980fdb", + "language": "Shell", + "lines": 75, + "truncated": false, + "block": 1, + "row": 11679 + }, + { + "path": "scriptTemplates/.addLogEntry.sh", + "sha256": "bcdddf15a93cc313cb09ea286418774b660e8a96976a9e77560d8b96ba87ec88", + "language": "Shell", + "lines": 13, + "truncated": false, + "block": 1, + "row": 11159 + }, + { + "path": "scriptTemplates/.checkAndCleanData.sh", + "sha256": "97a42063f034360ac9ea466758bb243cf38c705cda7da5e6fbc195b47c215551", + "language": "Shell", + "lines": 12, + "truncated": false, + "block": 1, + "row": 11408 + }, + { + "path": "scriptTemplates/.collectBeamformerFigures.sh", + "sha256": "8db18a33162e8f510dfe5669c3f96d361123b8ec0615126a71c97b0087c87ce4", + "language": "Shell", + "lines": 63, + "truncated": false, + "block": 1, + "row": 11680 + }, + { + "path": "scriptTemplates/.collectBeamformerFiguresOpt.sh", + "sha256": "5d311ad9ff7e3dad249cb929e924e31d497b05ed539b2a060189b902fb6e2bfe", + "language": "Shell", + "lines": 63, + "truncated": false, + "block": 1, + "row": 11687 + }, + { + "path": "scriptTemplates/.collectConnectivityFigures.sh", + "sha256": "2e42c42c885abb73f4cf91ce3350b8c0ba2e749c824eaa709ee24530446a3c73", + "language": "Shell", + "lines": 62, + "truncated": false, + "block": 1, + "row": 11688 + }, + { + "path": "scriptTemplates/.collectEyeTrackingFigures.sh", + "sha256": "72a3b95371cfaaf29bcf3db3145bb2dc4d0581184a904c7f229737ed1bfbdc46", + "language": "Shell", + "lines": 53, + "truncated": false, + "block": 1, + "row": 11681 + }, + { + "path": "scriptTemplates/.collectRetModelFit.sh", + "sha256": "f444737519eab23969ccb78683d732bd258bfa9bc84b4f0d0784f4f3596dd1c3", + "language": "Shell", + "lines": 42, + "truncated": false, + "block": 1, + "row": 11616 + }, + { + "path": "scriptTemplates/.liveUpdateQsub.sh", + "sha256": "e4e44ec47ff3a3bb54aeaeaf298c84a0ce1e91e7dd4d5d7711c5a8f373914d87", + "language": "Shell", + "lines": 22, + "truncated": false, + "block": 1, + "row": 11399 + }, + { + "path": "scriptTemplates/.makeMatlabJob.sh", + "sha256": "e650c3065cfb9a11f308460607399be70af010ccf0f3661e0b41c6d29eaca91d", + "language": "Shell", + "lines": 178, + "truncated": false, + "block": 1, + "row": 11726 + }, + { + "path": "scriptTemplates/.makeTrialSet.sh", + "sha256": "3c47b23fe4723c4e55d98ec34b98960cd8c2b467ec4d76bae30939e1db94fd56", + "language": "Shell", + "lines": 40, + "truncated": false, + "block": 1, + "row": 11705 + }, + { + "path": "scriptTemplates/.matrixMultiply.sh", + "sha256": "c5565ea11a3b8abc53c6fefbed6c726fe868b7896110834ee629f3ea470bac71", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11127 + }, + { + "path": "scriptTemplates/.moveDataToSubfolder.sh", + "sha256": "6c83b5c6c6998497df85f16f29f59d219554064b71218553eaf6997b66a998eb", + "language": "Shell", + "lines": 37, + "truncated": false, + "block": 1, + "row": 11600 + }, + { + "path": "scriptTemplates/.movesinglevolume.sh", + "sha256": "8b21a0b63c7c027ac4ffd407702ec5da623ffdca0cbfb895d6e9724b09b19d70", + "language": "Shell", + "lines": 3, + "truncated": false, + "block": 1, + "row": 11107 + }, + { + "path": "scriptTemplates/.removeLogEntry.sh", + "sha256": "6a0cb0e5a15e2ae15669835298f4ade54862e81c44664b46c1710ef93da0e960", + "language": "Shell", + "lines": 21, + "truncated": false, + "block": 1, + "row": 11255 + }, + { + "path": "scriptTemplates/.runMatlabJob.sh", + "sha256": "b9e35526efc0ff6ed784032ed04e89f391328a99536b7e9c4f78de23b13be363", + "language": "Shell", + "lines": 6, + "truncated": false, + "block": 1, + "row": 11139 + }, + { + "path": "scriptTemplates/.take_analysis_note.sh", + "sha256": "f6c0d7c39f4cf813383fd31dc0f74eb39521ef137df10b559333115683b825a9", + "language": "Shell", + "lines": 6, + "truncated": false, + "block": 1, + "row": 11134 + }, + { + "path": "scriptTemplates/.waitForLogEntry.sh", + "sha256": "f335aa1b2dabc46e7ef4d7bbf2c398139acab9d5ed65fb61f91afbc50f22acfd", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11173 + }, + { + "path": "scriptTemplates/.waitForQsubPID.sh", + "sha256": "a532e0465b4475ad3c947c1ff96f80b493a752a3de8d1c56d23c02059a954a8a", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11135 + }, + { + "path": "scriptTemplates/cluster_perm_fieldtrip.m", + "sha256": "038253173dbd83e1dc7bac6c698e6c21b78c24d206a9932ae7cd2ce467bfd0f6", + "language": "MATLAB", + "lines": 78, + "truncated": false, + "block": 1, + "row": 3147 + }, + { + "path": "scriptTemplates/eegAlphaGrandAvg.m", + "sha256": "cd91a87f1b10871627d431128d2bb158aebfe3bbf31d1d2d9e1f0ea09aa908ef", + "language": "MATLAB", + "lines": 200, + "truncated": false, + "block": 1, + "row": 3967 + }, + { + "path": "scriptTemplates/eegAnalysis.m", + "sha256": "7da42b648b93c93ffb64d0f838f426618cca4a2b3aef15b86f574e2904928a25", + "language": "MATLAB", + "lines": 107, + "truncated": false, + "block": 1, + "row": 3537 + }, + { + "path": "scriptTemplates/eegConnectivityAnalysis.m", + "sha256": "c2734d2a275971181dae23f74a7035dffc5f278525ad37a65206a0888ab686a4", + "language": "MATLAB", + "lines": 114, + "truncated": false, + "block": 1, + "row": 3523 + }, + { + "path": "scriptTemplates/eegCrossFrequencyAnalysis.m", + "sha256": "919b9128c470a62d4c21faa8dd224926cf9062ccd893f0cfad61c0341b6cc5e1", + "language": "MATLAB", + "lines": 75, + "truncated": false, + "block": 1, + "row": 3213 + }, + { + "path": "scriptTemplates/eegDICSfullbrain.m", + "sha256": "608073653000fc03b7046cb624c49b738ccd1916043a0036fd96426a128a2049", + "language": "MATLAB", + "lines": 184, + "truncated": false, + "block": 1, + "row": 3788 + }, + { + "path": "scriptTemplates/eegDemonstrateGammaBandSelectionByPeaks.m", + "sha256": "1dec4938389b0f03a0e9e992baba9fd92b02c3ae2f41f1099d3dcfdd254514e6", + "language": "MATLAB", + "lines": 53, + "truncated": false, + "block": 1, + "row": 2952 + }, + { + "path": "scriptTemplates/eegERPGrandAvg.m", + "sha256": "31c822f652c1e4729ea0ee07432b46f0cdb331d7fb01b53310766e7003b05db4", + "language": "MATLAB", + "lines": 199, + "truncated": false, + "block": 1, + "row": 3899 + }, + { + "path": "scriptTemplates/eegFmriCombineRegressionResults.m", + "sha256": "ef5c942035a98877d746e75349f4d909c3c11af25cd62052c5518209d307cf9c", + "language": "MATLAB", + "lines": 379, + "truncated": false, + "block": 1, + "row": 4255 + }, + { + "path": "scriptTemplates/eegFmriMakeClusterStats.m", + "sha256": "26c8c51a66be1552c4cb54820256c9ec30a1ef44af86b8f328e8a49753e98901", + "language": "MATLAB", + "lines": 252, + "truncated": false, + "block": 1, + "row": 4112 + }, + { + "path": "scriptTemplates/eegFmriPrepareRegression.m", + "sha256": "be7b876c7361b1ba212da99d337a9b321ef86a9d85c86a95654231d88ecb2e1e", + "language": "MATLAB", + "lines": 115, + "truncated": false, + "block": 1, + "row": 3594 + }, + { + "path": "scriptTemplates/eegFmriRegression.m", + "sha256": "52450265dfb5b6c2fec54e91bdfaf6a15f1289ecd0d82c63693fa71b7211f9ac", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 1, + "row": 2884 + }, + { + "path": "scriptTemplates/eegFmriRegression2.m", + "sha256": "19315081ae4a9ca6a1193b9d604a0e7f68d1266eeee3e7ae944754c61427bd79", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 1, + "row": 3381 + }, + { + "path": "scriptTemplates/eegFmriRegressionResults.m", + "sha256": "1711dd8bbf76ef372a976952e73921863098abe21d08f4262b0e9dff32911c14", + "language": "MATLAB", + "lines": 396, + "truncated": false, + "block": 1, + "row": 4257 + }, + { + "path": "scriptTemplates/eegFmriRegressionResults4Paper.m", + "sha256": "8a27527833d6369cbb8b5f8115147137c2c5c52a1d8846942801d4cc7e9e8d67", + "language": "MATLAB", + "lines": 1208, + "truncated": false, + "block": 1, + "row": 4324 + }, + { + "path": "scriptTemplates/eegFmriRegression_old.m", + "sha256": "0239fe05f3c995a8e2616fee66c8c38d84ffdc7add31212d0759dad705f13e7a", + "language": "MATLAB", + "lines": 186, + "truncated": false, + "block": 1, + "row": 3975 + }, + { + "path": "scriptTemplates/eegFmriRegression_old2.m", + "sha256": "831617545ef88f8fe5c8a63f86ffed36f28f2c1507cc121bb890608d9882272a", + "language": "MATLAB", + "lines": 279, + "truncated": false, + "block": 1, + "row": 4042 + }, + { + "path": "scriptTemplates/eegFmriSplitAllSubjectData.sh", + "sha256": "332c1d376b52e35bd26609e12cf50aca8fbf8345241729d3be80b091e45c4c0e", + "language": "Shell", + "lines": 31, + "truncated": false, + "block": 1, + "row": 11579 + }, + { + "path": "scriptTemplates/eegFmriSplitReg.sh", + "sha256": "7970402fee8249bae54c44ad11c5c360a040a333f2540f1abb90b201c299041c", + "language": "Shell", + "lines": 31, + "truncated": false, + "block": 1, + "row": 11592 + }, + { + "path": "scriptTemplates/eegFmriSplitRegAct.sh", + "sha256": "55d37c9b00f05235997c00e618f751db7404ead9ca8b35f1b01d224792e0b339", + "language": "Shell", + "lines": 31, + "truncated": false, + "block": 1, + "row": 11594 + }, + { + "path": "scriptTemplates/eegFmriSupplementaryAnalyses.m", + "sha256": "6d83face34e78508eaa54c7eb9d1cad541787cfa29be7bc5c7ce68de85e60226", + "language": "MATLAB", + "lines": 436, + "truncated": false, + "block": 1, + "row": 4179 + }, + { + "path": "scriptTemplates/eegFmri_deactivation_correlation.m", + "sha256": "c533936f975f10bc3aa2a7c9d5174ea9a60073e594bc25d2095d0c51e9a3ffd3", + "language": "MATLAB", + "lines": 637, + "truncated": false, + "block": 1, + "row": 4305 + }, + { + "path": "scriptTemplates/eegFreqAnalysis.m", + "sha256": "0dd4cb687a9dda6c69f9a2cfd002062032aab805fe498d2c8f1f78e8d5d10bfe", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 1, + "row": 2785 + }, + { + "path": "scriptTemplates/eegLightWeightAnalysis.m", + "sha256": "92664f79cf91bac15d0056496ed89dbbea1b3320fc8cea27b8a04c8427c177de", + "language": "MATLAB", + "lines": 297, + "truncated": false, + "block": 1, + "row": 4097 + }, + { + "path": "scriptTemplates/eegMakeMultiResultsPlots.m", + "sha256": "481e8137f0951085827aebb9e70f0b83997ef65a44eb042ae42ba8b110dcd58e", + "language": "MATLAB", + "lines": 653, + "truncated": false, + "block": 1, + "row": 4245 + }, + { + "path": "scriptTemplates/eegMakeResultsFiles.m", + "sha256": "955f36883539aa9ab2aaaf0f1f575386e4dd52405cdbf18abdab24c33f57aff4", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 1, + "row": 2917 + }, + { + "path": "scriptTemplates/eegPrepareFreesurferOutput.sh", + "sha256": "3f5c5f181a592bad5a67093d3331b0a37a4421f3d2f8f2471894c50142bd1fd6", + "language": "Shell", + "lines": 276, + "truncated": false, + "block": 1, + "row": 11755 + }, + { + "path": "scriptTemplates/eegPreprocessing.m", + "sha256": "7e98055f01b61e44c749e46e45af5b046c5359061d7c56c432be351460b3efc0", + "language": "MATLAB", + "lines": 175, + "truncated": false, + "block": 1, + "row": 3728 + }, + { + "path": "scriptTemplates/eegProcessData.m", + "sha256": "dacce0129b4ec7357f4880a2352753afbeaafbcdf4975ef7f12c036382a92f20", + "language": "MATLAB", + "lines": 672, + "truncated": false, + "block": 1, + "row": 4278 + }, + { + "path": "scriptTemplates/eegSelectVC.m", + "sha256": "9aa4a92f2e106df4342b4c79782db205406ce263a8884e0faf84b3b591dbc75e", + "language": "MATLAB", + "lines": 70, + "truncated": false, + "block": 1, + "row": 3314 + }, + { + "path": "scriptTemplates/eegSetParameters.m", + "sha256": "0347e8cd29a00c3db7122ae34c0c3716a169285ceca8bfa61710cb9a8ccb2b71", + "language": "MATLAB", + "lines": 123, + "truncated": false, + "block": 1, + "row": 3809 + }, + { + "path": "scriptTemplates/eegSimulationOptimizeV123DistanceAndPower.m", + "sha256": "83ba11e136281181dc02bb58f3c9c604a7b1d07d7138b5d497741a91296177e1", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 1, + "row": 3021 + }, + { + "path": "scriptTemplates/eegTimelockOnVC.m", + "sha256": "bde49df2b9cb27b0f01d7e1e6c5700d29970f4db8e4a93e680bc9548cf2c4fd4", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 1, + "row": 2620 + }, + { + "path": "scriptTemplates/eegVirtualChannelOptSpacePower.m", + "sha256": "345f616e0ab6216f99c5f67cf56bf32dceb4c62b92570b72ad5d892bff2b44a2", + "language": "MATLAB", + "lines": 261, + "truncated": false, + "block": 1, + "row": 4011 + }, + { + "path": "scriptTemplates/eegVirtualChannels.m", + "sha256": "dc0974d52c6a5ab44c50bd5d743a64684bb88e430e3d999f081b4c5ad3757a51", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 1, + "row": 3115 + }, + { + "path": "scriptTemplates/eyeProcessData.m", + "sha256": "e5ca64242ec5d66e7cb8374d54093272b42fd84ac7c1fb2f80bab569f2b234f8", + "language": "MATLAB", + "lines": 466, + "truncated": false, + "block": 1, + "row": 4246 + }, + { + "path": "scriptTemplates/eyeProcessEyeLinkData.sh", + "sha256": "1f38db0cb3f0bfdc52824b7edcdacb74ca91a0f367c47762d915480941397fd7", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11613 + }, + { + "path": "scriptTemplates/fmriCombineMovePar.sh", + "sha256": "7e2928f4078e5208f817a7d0ecdb5efdeef9b435c6fd14692029968273b5b71c", + "language": "Shell", + "lines": 44, + "truncated": false, + "block": 1, + "row": 11650 + }, + { + "path": "scriptTemplates/fmriConcatANTsTransforms.sh", + "sha256": "346b2a7ec7edf6132f72698ce86afbe33841cd42d8d1e1b19e6aef94366289cb", + "language": "Shell", + "lines": 24, + "truncated": false, + "block": 1, + "row": 11409 + }, + { + "path": "scriptTemplates/fmriCoregistration.m", + "sha256": "78000171865e0b2d45d78345ee96af0c1819f8cf2a84de655729092d633704b8", + "language": "MATLAB", + "lines": 83, + "truncated": false, + "block": 1, + "row": 3484 + }, + { + "path": "scriptTemplates/fmriCoregistrationANTs.sh", + "sha256": "619bf29cb998ad7804bd2a963dee1dec5062ceb3a7a39de5028ebb676a10d279", + "language": "Shell", + "lines": 110, + "truncated": false, + "block": 1, + "row": 11725 + }, + { + "path": "scriptTemplates/fmriCorrectFieldDistortion.sh", + "sha256": "c803cac6ad9f651bf1cec1e0d8e0e9a7083aca042f91feb09e9d151e7852c913", + "language": "Shell", + "lines": 34, + "truncated": false, + "block": 1, + "row": 11656 + }, + { + "path": "scriptTemplates/fmriDefaceT1s.sh", + "sha256": "89488e12237146e2346c8e6de5bef3704e9b93bf23f0ecdae6b43a126c03fd0f", + "language": "Shell", + "lines": 28, + "truncated": false, + "block": 1, + "row": 11636 + }, + { + "path": "scriptTemplates/fmriDicoms2niftis.sh", + "sha256": "69ef95cf47396e7d29f983f95216622b1e279b35229c84ec592a9c78c4358e5e", + "language": "Shell", + "lines": 35, + "truncated": false, + "block": 1, + "row": 11500 + }, + { + "path": "scriptTemplates/fmriFctMask2FSbrainmask.sh", + "sha256": "9681af07a4fb90f2833ac611b8c689a6f8e453e1b3ab550ffbae4e147ab8ef07", + "language": "Shell", + "lines": 72, + "truncated": false, + "block": 1, + "row": 11686 + }, + { + "path": "scriptTemplates/fmriFreesurferReconAll.sh", + "sha256": "37742af070df1bfce5af39c7569b3e8d3f3355e730f3e0895a96a4a631d46c4b", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11256 + }, + { + "path": "scriptTemplates/fmriLayerMakeMovie.m", + "sha256": "8febf060fc6a0a8b47cbd435e59cf6d7c67577c0f52405fd460ef69bf1159b6a", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 1, + "row": 2803 + }, + { + "path": "scriptTemplates/fmriLayerSegmentation.m", + "sha256": "60047e95719ed845b40103b6ad47d07528e4d05d85765a76fd3555351ca7d803", + "language": "MATLAB", + "lines": 101, + "truncated": false, + "block": 1, + "row": 3424 + }, + { + "path": "scriptTemplates/fmriLayniiSegmentation.sh", + "sha256": "5f92c0e8438fe42c7c2b844057fa28bccd401da464146bfcfc7b0528249737cf", + "language": "Shell", + "lines": 36, + "truncated": false, + "block": 1, + "row": 11596 + }, + { + "path": "scriptTemplates/fmriMake3Minus1Contrast.sh", + "sha256": "cdbe534c18e83cfaf14e7d6032f468190573904a0ecf3c2293505b023a485af9", + "language": "Shell", + "lines": 22, + "truncated": false, + "block": 1, + "row": 11598 + }, + { + "path": "scriptTemplates/fmriMakeAnatomicalMasks.sh", + "sha256": "a5b00232c18fc33388d3192c596ff73cc3d6b23988316a93b2a66ceaffcdd456", + "language": "Shell", + "lines": 44, + "truncated": false, + "block": 1, + "row": 11695 + }, + { + "path": "scriptTemplates/fmriMakeCSFmask.sh", + "sha256": "a139464b74709a6cda69850d6ea908c40df4cad4d82bae017e41306621edb1e2", + "language": "Shell", + "lines": 9, + "truncated": false, + "block": 1, + "row": 11406 + }, + { + "path": "scriptTemplates/fmriMakeContrastAndRoiMask.sh", + "sha256": "1bb89aa1e4281ed772b5ca9e56459bb7bd643c9c539d32d3897f47de3f8113fb", + "language": "Shell", + "lines": 24, + "truncated": false, + "block": 1, + "row": 11396 + }, + { + "path": "scriptTemplates/fmriMakeResults.m", + "sha256": "75f3f4f4875ccdeda0767f23ff2b4442cba632397efdf6ced977b0df3e279997", + "language": "MATLAB", + "lines": 111, + "truncated": false, + "block": 1, + "row": 3503 + }, + { + "path": "scriptTemplates/fmriMoveBoundariesANTs.m", + "sha256": "f74498d341147b05bf8abf5b83ed8f58c3f739370f37d890bdb17b395898cf91", + "language": "MATLAB", + "lines": 109, + "truncated": false, + "block": 1, + "row": 3535 + }, + { + "path": "scriptTemplates/fmriPrepareFunctionals.sh", + "sha256": "f63dd558a9eeca4ec020cf34724bbbb607e2662d4df317e583c97d206335d809", + "language": "Shell", + "lines": 30, + "truncated": false, + "block": 1, + "row": 11583 + }, + { + "path": "scriptTemplates/fmriRealign.m", + "sha256": "50738ae6bf9c2ab1b4d0554c85dba427ca8d5818e3b200f9e5b0c927322c46a1", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 1, + "row": 3131 + }, + { + "path": "scriptTemplates/fmriRealign.sh", + "sha256": "5c5eab2eaf98b1e75964def20c75dffcdfb003b158d158d1f6625fbc6730bf0e", + "language": "Shell", + "lines": 214, + "truncated": false, + "block": 1, + "row": 11745 + }, + { + "path": "scriptTemplates/fmriRealign2.sh", + "sha256": "864080996108b47ae581cf07a6599236ffa98f98435928589e8af4fca79ae366", + "language": "Shell", + "lines": 102, + "truncated": false, + "block": 1, + "row": 11706 + }, + { + "path": "scriptTemplates/fmriRealign3.sh", + "sha256": "6390390ac52f97aab03b10fbc540a2abf9a1560fb6112bc5e4f4618b3172aafd", + "language": "Shell", + "lines": 185, + "truncated": false, + "block": 1, + "row": 11732 + }, + { + "path": "scriptTemplates/fmriRealign4.sh", + "sha256": "05157f67d90d55e7083c5264c4712683cec118e1e72e2e4613630c14e5e487d9", + "language": "Shell", + "lines": 179, + "truncated": false, + "block": 1, + "row": 11738 + }, + { + "path": "scriptTemplates/fmriRealignANTs.sh", + "sha256": "4f298ac226befc955351392db77b8e2bfd3dde4a49f9e7d3c810e32e21461c90", + "language": "Shell", + "lines": 104, + "truncated": false, + "block": 1, + "row": 11713 + }, + { + "path": "scriptTemplates/fmriRealignANTs2-single.sh", + "sha256": "46a5b9d93b5ef9f9b1c34a872d129d50197f588e15bb2ddf816326bd5903eeef", + "language": "Shell", + "lines": 165, + "truncated": false, + "block": 1, + "row": 11723 + }, + { + "path": "scriptTemplates/fmriRealignANTs2.sh", + "sha256": "aa73d30de49a0a1efd4c5b2d58fa8eaffbb83ec57bb92af800c0c5d3cf89335b", + "language": "Shell", + "lines": 59, + "truncated": false, + "block": 1, + "row": 11646 + }, + { + "path": "scriptTemplates/fmriRealignANTsFSL-single.sh", + "sha256": "f7e0e6dec346fa00634647e388e19154a33d0c17e34f786cd3403c0042e36061", + "language": "Shell", + "lines": 128, + "truncated": false, + "block": 1, + "row": 11729 + }, + { + "path": "scriptTemplates/fmriRealignANTsFSL.sh", + "sha256": "72de7682aa73b90e75d330c90dd2fed2fa7e7b020c331aa874ae8a5af98416f9", + "language": "Shell", + "lines": 45, + "truncated": false, + "block": 1, + "row": 11597 + }, + { + "path": "scriptTemplates/fmriRealignInterTask.sh", + "sha256": "cb69b1ca6f6e9e2df6d0407d5549ef8f6a9e2d13fe95b11f3731604635bcc7ed", + "language": "Shell", + "lines": 23, + "truncated": false, + "block": 1, + "row": 11413 + }, + { + "path": "scriptTemplates/fmriRealignIntraBlock.sh", + "sha256": "c3887c4aceb5a1cfec07eb40e60a72ab1b653e3667c65bf302e0150dab37fe48", + "language": "Shell", + "lines": 25, + "truncated": false, + "block": 1, + "row": 11391 + }, + { + "path": "scriptTemplates/fmriRealignIntraTask.sh", + "sha256": "b22aa13aaa578c8665f918559009d634161bfc539a4ba193c6ce2a9f72c8d07d", + "language": "Shell", + "lines": 26, + "truncated": false, + "block": 1, + "row": 11578 + }, + { + "path": "scriptTemplates/fmriRealignTest.sh", + "sha256": "58b87b0933cafbe1e3e75edb551020f1fdf9187661fe897ffef7ec12a68f0d14", + "language": "Shell", + "lines": 22, + "truncated": false, + "block": 1, + "row": 11495 + }, + { + "path": "scriptTemplates/fmriRegAnalysis.m", + "sha256": "df59d0bc9b1ee5e424c0baf7360bcce040cfc1f597fe1afa9df8b237461f9a7b", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 1, + "row": 3074 + }, + { + "path": "scriptTemplates/fmriRegAnalysisStats.m", + "sha256": "6852f86450599fab7528894030d0414a566dadb92778d0c3e03879c93469b2e8", + "language": "MATLAB", + "lines": 193, + "truncated": false, + "block": 1, + "row": 3836 + }, + { + "path": "scriptTemplates/fmriRetAnalyzePRF.m", + "sha256": "9a07f8749de9a3750e99894ad3c7cb7de3913de50fb92cd70943e99ac52cffa5", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 1, + "row": 2822 + }, + { + "path": "scriptTemplates/fmriRetAtlasFit.sh", + "sha256": "c702cbae7f49c2e8e58b15d2a1d36d927ca1978b052f4bbe69f7b4fc39355c7c", + "language": "Shell", + "lines": 35, + "truncated": false, + "block": 1, + "row": 11621 + }, + { + "path": "scriptTemplates/fmriRetCombinePRFresults.m", + "sha256": "a9acefd61db7a4c9130682a5acb93f4c6f082f38e6bc013336b80db060b19cd6", + "language": "MATLAB", + "lines": 106, + "truncated": false, + "block": 1, + "row": 3509 + }, + { + "path": "scriptTemplates/fmriRetGUI2Patch.sh", + "sha256": "6cc694cc7a7145713a4dfb4e96458598c93ae1dba7dd7a54c1cb20dd11e686a2", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11219 + }, + { + "path": "scriptTemplates/fmriRetGUI2ROIs.sh", + "sha256": "445a1ccbbf712b68e8a7e58f0726d6776b86ba89edb53564b2e699ed7e57dca8", + "language": "Shell", + "lines": 54, + "truncated": false, + "block": 1, + "row": 11685 + }, + { + "path": "scriptTemplates/fmriRetLabels2Masks.sh", + "sha256": "3d3fc6bc0a93cb2982511ff93f9a56a696996b837c791af17dd38cc698adbfdc", + "language": "Shell", + "lines": 36, + "truncated": false, + "block": 1, + "row": 11664 + }, + { + "path": "scriptTemplates/fmriRetMakeModelFitPlot.m", + "sha256": "37a21ca97f0f601451d973e99f7e4990a1be33d7ff4dec32dde61ccd7d890a0b", + "language": "MATLAB", + "lines": 80, + "truncated": false, + "block": 1, + "row": 3532 + }, + { + "path": "scriptTemplates/fmriRetMakeOverlays.sh", + "sha256": "433c4b53ed021a846c74904cac4781a75cfbf86abad6f689881c81c36e8b08c9", + "language": "Shell", + "lines": 31, + "truncated": false, + "block": 1, + "row": 11640 + }, + { + "path": "scriptTemplates/fmriRetMorphResultMaps.sh", + "sha256": "b419246a998b15fde89acb8b7041bf9269d9f90f5d533616fb68e7ed9c8b55b9", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11397 + }, + { + "path": "scriptTemplates/fmriRetPatch2Flat.sh", + "sha256": "e5895ba4788fafbc0eb187686e54542af7ca0fbc0f323246780402b20a66d033", + "language": "Shell", + "lines": 13, + "truncated": false, + "block": 1, + "row": 11338 + }, + { + "path": "scriptTemplates/fmriRetSmoothData.sh", + "sha256": "bff0e26c8fdda53b1a44792d84422a6560096af9c515994e0fc5947e3489fceb", + "language": "Shell", + "lines": 5, + "truncated": false, + "block": 1, + "row": 11149 + }, + { + "path": "scriptTemplates/fmriRetSplitAnalyzePRF.sh", + "sha256": "fbfa5468096dcd6423a4eda4bacb381b1698726b577c1257164eba01f8caed70", + "language": "Shell", + "lines": 50, + "truncated": false, + "block": 1, + "row": 11703 + }, + { + "path": "scriptTemplates/fmriRetTseriesInterpolation.m", + "sha256": "e9efbb310157f362cb0ba33d945f45045e279fc6bccf1c91382671d8c4af6dc1", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 1, + "row": 3292 + }, + { + "path": "scriptTemplates/fmriSpmTmap2Overlay.sh", + "sha256": "7e88aaf69e8f9b0101fa57eb57316a27c91c2896bccf0f6ae4836c788845a0bd", + "language": "Shell", + "lines": 56, + "truncated": false, + "block": 1, + "row": 11692 + }, + { + "path": "scriptTemplates/fmriTestRealignment.sh", + "sha256": "e6318f19d689691c58d8b56944a893a1f4234eea842a1b2b49e599cd8a8ee33c", + "language": "Shell", + "lines": 103, + "truncated": false, + "block": 1, + "row": 11715 + }, + { + "path": "scriptTemplates/optimizePowerAndSpace.m", + "sha256": "341f2b98f003aa01503a775c7a586c046453697d09529d284935c413a17b6631", + "language": "MATLAB", + "lines": 101, + "truncated": false, + "block": 1, + "row": 3319 + }, + { + "path": "scriptTemplates/paper_figures_compute.m", + "sha256": "0ba1da74cf83d53e93234ad516599927778c26910bbfe0dfa57efca7103657b4", + "language": "MATLAB", + "lines": 3569, + "truncated": true, + "block": 1, + "row": 4361 + }, + { + "path": "scriptTemplates/plotVirtualChannel.m", + "sha256": "d625fb1e5cbc6e3b20a650c0a64a410b2c8a934e6d4df5ea0772710e43a70de7", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 1, + "row": 2597 + }, + { + "path": "scriptTemplates/selectVirtChannels.m", + "sha256": "0b68de1e658a2e33ea15578d289b49ef21e5ef17062a966bf2201a9df92a638e", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 1, + "row": 2307 + }, + { + "path": "scriptTemplates/sortVirtualChannel.m", + "sha256": "ede9f63f18963c5f307bf1c8b5857901c9966a07ab0cd88a0155ad6ce687cd31", + "language": "MATLAB", + "lines": 139, + "truncated": false, + "block": 1, + "row": 3601 + }, + { + "path": "scriptTemplates/thesis_figures_compute.m", + "sha256": "5dad2dc42d96e4ab4e261d68f5b3d3ba07da04155220cdbb0f155000357ce4bd", + "language": "MATLAB", + "lines": 1845, + "truncated": false, + "block": 1, + "row": 4352 + }, + { + "path": "scriptTemplates/timelock2virtualChannels.m", + "sha256": "6b7106ea0308ec427949c6b3dc0e2005a053660586cada748ebdd6754378ebe5", + "language": "MATLAB", + "lines": 70, + "truncated": false, + "block": 1, + "row": 3226 + } + ] +} \ No newline at end of file diff --git a/manifests/23/zenodo__20250508.json b/manifests/23/zenodo__20250508.json new file mode 100644 index 0000000000000000000000000000000000000000..bf373cfd281a1b06abd3ad88871df0e0b55ab103 --- /dev/null +++ b/manifests/23/zenodo__20250508.json @@ -0,0 +1,147 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:20250508", + "url": "https://doi.org/10.5281/zenodo.20250508", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "7b7a830bdbe39a7bbb14c30a6d46dd3fa2eebd7a5e0aad9249b3e913199f9d98", + "language": "Text", + "lines": 62, + "truncated": false, + "block": 1, + "row": 11826 + }, + { + "path": "SpaAlign/__init__.py", + "sha256": "abba682a5d8fa8e120bd5fe306d6494bb4a59921a42c98baf01ea728f896ccbe", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 1, + "row": 5018 + }, + { + "path": "SpaAlign/contrastive_loss.py", + "sha256": "3580b228d918b60fdc5d4164ea33d93b99ef52f5be759b07209524967164440b", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 1, + "row": 6568 + }, + { + "path": "SpaAlign/hipt_4k.py", + "sha256": "92fe584e3766676020cb9ffc45006334fe3c510ed3a8c3a957c259d8c3302de7", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 1, + "row": 7588 + }, + { + "path": "SpaAlign/hipt_model_utils.py", + "sha256": "4ba1dd182658b3cb8a4bef3efa022052938fcb6a7723e441978f6dad4fc04a51", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 1, + "row": 6862 + }, + { + "path": "SpaAlign/hist_features.py", + "sha256": "9a00016426e6d246cc9019a256cf5ad4a287e85bdbac1d3db85594155af2024c", + "language": "Python", + "lines": 503, + "truncated": false, + "block": 1, + "row": 9148 + }, + { + "path": "SpaAlign/model.py", + "sha256": "2a8497e8f52347e201a3b143289b7a9c671ddcaa0790fd7e81b2edf8d5a137c6", + "language": "Python", + "lines": 259, + "truncated": false, + "block": 1, + "row": 8762 + }, + { + "path": "SpaAlign/nets.py", + "sha256": "25600c7b21780e225600d6b1ffa4417197a441db074e683d30c8836c1dc16553", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 1, + "row": 6997 + }, + { + "path": "SpaAlign/utils.py", + "sha256": "5600a397e60f7d9fba9d710bb9d6c00e8240fa39c319061b085f575d5c9021d2", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 1, + "row": 7475 + }, + { + "path": "SpaAlign/vision_transformer.py", + "sha256": "b8025e70ace2f318dcd1ea0cd699aa60e15ba42ff7554b44a02546bcf6343acb", + "language": "Python", + "lines": 330, + "truncated": false, + "block": 1, + "row": 8835 + }, + { + "path": "SpaAlign/vision_transformer4k.py", + "sha256": "397db8ebac6c25a9f08c5dcc4a4dfd0734c8d79c5946afc2f2289debef9a011b", + "language": "Python", + "lines": 268, + "truncated": false, + "block": 1, + "row": 8501 + }, + { + "path": "tutorial/Tutorial1_simulation.ipynb", + "sha256": "225312e607ef8fec23aee7a54ae83e06ac81b46217b80f517d8901f63fa7e925", + "language": "Jupyter", + "lines": 94, + "truncated": false, + "block": 1, + "row": 1736 + }, + { + "path": "tutorial/Tutorial2_HLN.ipynb", + "sha256": "a10db61acb9fab7018a8e3521c164721b1226512003ff2e39cc06fc1eb0ccd61", + "language": "Jupyter", + "lines": 86, + "truncated": false, + "block": 1, + "row": 1720 + }, + { + "path": "tutorial/Tutorial3_Mouse_brain.ipynb", + "sha256": "f0a6f033c565c05118cbdba6c5248cb9e8527dd4eaf0b1a36ea0f9af3a7e41bd", + "language": "Jupyter", + "lines": 102, + "truncated": false, + "block": 1, + "row": 1743 + }, + { + "path": "tutorial/Tutorial4_Tonsil.ipynb", + "sha256": "ab821d3e0ba1fd134613e7050cf44410ea465da6e901177a6f03c4f00ca9513a", + "language": "Jupyter", + "lines": 130, + "truncated": false, + "block": 1, + "row": 1770 + } + ] +} \ No newline at end of file diff --git a/manifests/24/github.com__paulbrodersen__somnotate.json b/manifests/24/github.com__paulbrodersen__somnotate.json new file mode 100644 index 0000000000000000000000000000000000000000..0551d80653b4e9c4f9a5f42933f02ba76293eabf --- /dev/null +++ b/manifests/24/github.com__paulbrodersen__somnotate.json @@ -0,0 +1,192 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/paulbrodersen/somnotate", + "url": "https://github.com/paulbrodersen/somnotate", + "host": "github.com", + "commit": "a20f33de62511d8c172e333896608b7fc166d0f0", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "589ed823e9a84c56feb95ac58e7cf384626b9cbf4fda2a907bc36e103de1bad2", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2232 + }, + { + "path": "README.md", + "sha256": "d714fe11976a467552299e532f44d74c929fea7d0a90776a5b677623e6b3cb05", + "language": "Text", + "lines": 565, + "truncated": false, + "block": 2, + "row": 2659 + }, + { + "path": "example_pipeline/01_preprocess_signals.py", + "sha256": "6069eec2d54c8380e139360d8afc755a4855b89c515bbb39970f58990bc9ca3a", + "language": "Python", + "lines": 193, + "truncated": false, + "block": 2, + "row": 2032 + }, + { + "path": "example_pipeline/02_test_state_annotation.py", + "sha256": "143b95caddf09b446c7ea1b776e58ffe7dd035c7900939d21fff2b4e45771b3d", + "language": "Python", + "lines": 176, + "truncated": false, + "block": 2, + "row": 2011 + }, + { + "path": "example_pipeline/03_train_state_annotation.py", + "sha256": "609c5effcaf70731d70a505587f8ce340def7d4417a92a390f39f82b710b8c33", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 2, + "row": 1793 + }, + { + "path": "example_pipeline/04_run_state_annotation.py", + "sha256": "50b3fc73550326471f495126a957fc9dec042d35f5874fba47e8d2ac1f6a7236", + "language": "Python", + "lines": 150, + "truncated": false, + "block": 2, + "row": 1951 + }, + { + "path": "example_pipeline/05_manual_refinement.py", + "sha256": "04242e8c6a9f3a9d9bb7845a7d33742aca7843910c3bdcd131c659a521ad0475", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 2, + "row": 2023 + }, + { + "path": "example_pipeline/06_compare_state_annotations.py", + "sha256": "b32f433ac2bec1b961616934956921058a704f8fd80f986242b502448657f34a", + "language": "Python", + "lines": 185, + "truncated": false, + "block": 2, + "row": 2041 + }, + { + "path": "example_pipeline/07_compute_state_probabilities.py", + "sha256": "0e876dbd4d041ae805e48470b9fecb200c593a12a6e63fe0bcb161765cfac296", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 2, + "row": 1868 + }, + { + "path": "example_pipeline/07_run_missing_value_annotation.py", + "sha256": "df93b0551f210bdc0d0eaf0a67fb3cc8b1f6da87cdc133ee047b26700151f428", + "language": "Python", + "lines": 181, + "truncated": false, + "block": 2, + "row": 2010 + }, + { + "path": "example_pipeline/configuration.py", + "sha256": "23514de09d0ad9f92affa10f0fe22eeea2cfd435b555afd68eefbbfaf87e320a", + "language": "Python", + "lines": 232, + "truncated": false, + "block": 2, + "row": 2020 + }, + { + "path": "example_pipeline/data_io.py", + "sha256": "9bc41b8875ef580200f6d7ea4f2125720343177ed87c9a5fb45a3a5ad0672d3c", + "language": "Python", + "lines": 362, + "truncated": false, + "block": 2, + "row": 2104 + }, + { + "path": "extensions/convert_hypnogram_to_matlab_struct.py", + "sha256": "d6987ee82b5fcd1ff1234fd3ed37c312d2df909a263a524a68e041d90ca62b7c", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 2, + "row": 1814 + }, + { + "path": "extensions/convert_sleepsign_files.py", + "sha256": "01edfd086006e489b0a3ae3c8a210cd0f2b7a9066c83bfa360a7a4d60dc005ae", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 2, + "row": 1916 + }, + { + "path": "extensions/truncate_datasets.py", + "sha256": "55b647cae90855a481c5bb6662764b42907a28b8ae6e694fa4b0e333992cc660", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 2, + "row": 1889 + }, + { + "path": "somnotate/__init__.py", + "sha256": "5baa51de788666d23b559d11178d4b0153f6e8ac3bc00965b7739737cdb74034", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 2, + "row": 1700 + }, + { + "path": "somnotate/_automated_state_annotation.py", + "sha256": "f01e341091742426828d555ca2c715589985cbad73538fc11ea6308b0aa96a47", + "language": "Python", + "lines": 375, + "truncated": false, + "block": 2, + "row": 2134 + }, + { + "path": "somnotate/_manual_state_annotation.py", + "sha256": "0e654cf83d6c10d856bb03036277e03193a0d749c8917751993a2d24d14fd1f7", + "language": "Python", + "lines": 1046, + "truncated": false, + "block": 2, + "row": 2230 + }, + { + "path": "somnotate/_plotting.py", + "sha256": "7cef84d961990be24136cbcf794efe509269ec8cf467da618621a41c19302baa", + "language": "Python", + "lines": 168, + "truncated": false, + "block": 2, + "row": 1938 + }, + { + "path": "somnotate/_utils.py", + "sha256": "ef4aea03e77ad72a4370b7d32b1c9a01defcd9bff5e4ae0b6341fd6aed8e6afb", + "language": "Python", + "lines": 299, + "truncated": false, + "block": 2, + "row": 2063 + } + ] +} \ No newline at end of file diff --git a/manifests/25/zenodo__17397581.json b/manifests/25/zenodo__17397581.json new file mode 100644 index 0000000000000000000000000000000000000000..28f572ed9fd7f0135bb0b160e0d572a9640f49bb --- /dev/null +++ b/manifests/25/zenodo__17397581.json @@ -0,0 +1,399 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:17397581", + "url": "10.5281/zenodo.17397581", + "host": "zenodo.org", + "commit": "", + "license": "BSD-3-Clause", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "1d1b25e75ad88246a1022b4b70f72df6e792b03a5e99553954284b8d73fcf4a6", + "language": "License", + "lines": 28, + "truncated": false, + "block": 1, + "row": 2194 + }, + { + "path": "README.md", + "sha256": "add66690bd6e6bc8085d6b26639a1c048cd231b7706a3d2223bf54188d9c1087", + "language": "Text", + "lines": 175, + "truncated": false, + "block": 1, + "row": 11987 + }, + { + "path": "behavioral/plot_audiograms.m", + "sha256": "e266007e9e56eb91b2c61daca6501038561a311e53ea5c4146103c3a385e62db", + "language": "MATLAB", + "lines": 98, + "truncated": false, + "block": 1, + "row": 3309 + }, + { + "path": "chirps/sensorlevel/compute_aefs.m", + "sha256": "6e669ba75e57ad78c264363cad5fb9863fbb9664c8c5084eea3d331fbdbddb0a", + "language": "MATLAB", + "lines": 317, + "truncated": false, + "block": 1, + "row": 4093 + }, + { + "path": "chirps/sensorlevel/plot_aefs_grouplevel.m", + "sha256": "65a9cf489def57fcae08511517f270f8ff2d3a20371ad29f712b960b416b24d5", + "language": "MATLAB", + "lines": 401, + "truncated": false, + "block": 1, + "row": 4133 + }, + { + "path": "chirps/sensorlevel/plot_aefs_subjectlevel.m", + "sha256": "a75399d895cb83388ea21dc6b3f715642bbcde034a139302dc199e7c61b71d7d", + "language": "MATLAB", + "lines": 115, + "truncated": false, + "block": 1, + "row": 3462 + }, + { + "path": "chirps/settings_chirps.m", + "sha256": "9d6efcd1884df4bcf55dd75f3cab9ba0889a67401b38958c105c1d303d93392f", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 1, + "row": 3018 + }, + { + "path": "chirps/sourcelevel/check_coregistration.m", + "sha256": "6dc5c6fddf9011016d2368e2dba1d76cf7948bd923b667794c27c0d9b1101e6b", + "language": "MATLAB", + "lines": 129, + "truncated": false, + "block": 1, + "row": 3588 + }, + { + "path": "chirps/sourcelevel/compute_dipolfit.m", + "sha256": "b9909cc82bb49c7f453097d34858b3f4e8bd3d949c0e5e66dd665406d4376c1a", + "language": "MATLAB", + "lines": 192, + "truncated": false, + "block": 1, + "row": 3921 + }, + { + "path": "chirps/sourcelevel/compute_headmodel_sourcemodel.m", + "sha256": "ab92db27fe6c34e2d318545220ea768660f07b881d84cdbc0add7d08a7a159d8", + "language": "MATLAB", + "lines": 299, + "truncated": false, + "block": 1, + "row": 4092 + }, + { + "path": "chirps/sourcelevel/plot_dipolfit_grouplevel.m", + "sha256": "c4e23f741b45f791bb04124408a44074e7c3765aac41f7457103ec6528726a3e", + "language": "MATLAB", + "lines": 420, + "truncated": false, + "block": 1, + "row": 4238 + }, + { + "path": "chirps/sourcelevel/plot_dipolfit_subjectlevel.m", + "sha256": "b7bc201dfd131cdceb75d57fab747b4ede7d6746e9ee67adb21ca0f918461f39", + "language": "MATLAB", + "lines": 227, + "truncated": false, + "block": 1, + "row": 3917 + }, + { + "path": "helper_functions/bluewhitered.m", + "sha256": "95e3ee8768e3bea283aa0fb3101688c82036c839185b2425827e349778fb4328", + "language": "MATLAB", + "lines": 122, + "truncated": false, + "block": 1, + "row": 3362 + }, + { + "path": "helper_functions/cal_envelope.m", + "sha256": "ee12f82ad4f503e3c1a1fc086fe1d7ad3909105724c74bcff2af8f8fffbfccef", + "language": "MATLAB", + "lines": 146, + "truncated": false, + "block": 1, + "row": 3781 + }, + { + "path": "helper_functions/check_diploc.m", + "sha256": "2c45bb41d2cc5db0a0c4c4315cd4dea049618ed423ef0cfc6977bf765cf433a8", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 1, + "row": 2806 + }, + { + "path": "helper_functions/constrained_dipolfitting.m", + "sha256": "e29bbfe239af8cf1ff042df0eb7e1994a459a359423763db8f996c1711f831f0", + "language": "MATLAB", + "lines": 155, + "truncated": false, + "block": 1, + "row": 3787 + }, + { + "path": "helper_functions/distinguishable_colors.m", + "sha256": "3599ada36f599395f667adabab9416539ef356ba87ef3574e77cfc75098b1a9c", + "language": "MATLAB", + "lines": 152, + "truncated": false, + "block": 1, + "row": 3744 + }, + { + "path": "helper_functions/getpos.m", + "sha256": "c712afd0acd0d82b9ac00e645ca67320db240a771103b76d24944e224b62e32d", + "language": "MATLAB", + "lines": 182, + "truncated": false, + "block": 1, + "row": 3710 + }, + { + "path": "helper_functions/hatchfill2.m", + "sha256": "76ec667cabd53f0ee77053503b0d527de74676cd14b06e3d43374514d341a48c", + "language": "MATLAB", + "lines": 1095, + "truncated": false, + "block": 1, + "row": 4311 + }, + { + "path": "helper_functions/legendflex.m", + "sha256": "25a34f6a0a7f7aa8cb8e65d83bc58652c4fafe5bfbd03f1ae1d57ce6f70aaebd", + "language": "MATLAB", + "lines": 924, + "truncated": false, + "block": 1, + "row": 4310 + }, + { + "path": "helper_functions/my_trialfun_audiobook.m", + "sha256": "fb2b27f31526628539f0c799a0e3071058e62521fed107e588045c007c3f8856", + "language": "MATLAB", + "lines": 74, + "truncated": false, + "block": 1, + "row": 3323 + }, + { + "path": "helper_functions/my_trialfun_olsa.m", + "sha256": "b8a4c29cd0d64919539f6c7a0a111e2aed99476030965255aa1a56ba9a8f7642", + "language": "MATLAB", + "lines": 68, + "truncated": false, + "block": 1, + "row": 3268 + }, + { + "path": "helper_functions/read_events_modified.m", + "sha256": "c5ef0b572e8bfaf01d2709fe32cbfa1ab0291348e6175131f3c506d887e0efc7", + "language": "MATLAB", + "lines": 109, + "truncated": false, + "block": 1, + "row": 3614 + }, + { + "path": "helper_functions/setpos.m", + "sha256": "bcd88b64ee47da59de532d34abf1b28860c743c80b760064df02587fce289b56", + "language": "MATLAB", + "lines": 189, + "truncated": false, + "block": 1, + "row": 3796 + }, + { + "path": "maxfilter/apply_maxfilter_parallel.py", + "sha256": "47a4ffbf4a3fa2fcb1a64db8bba227517753d39e648953d7542049b720f2c3b4", + "language": "Python", + "lines": 404, + "truncated": false, + "block": 1, + "row": 9147 + }, + { + "path": "maxfilter/check_maxfilter_stats.py", + "sha256": "9195b1b28c1a255a73d75808c9a1bee83aa1e975b4a670655a4d77582110cb94", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 1, + "row": 7243 + }, + { + "path": "maxfilter/plot_trafo.py", + "sha256": "04991057cf5893120f425a6891c36d95ce2de8daf1790e731bda08523e8d3734", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 1, + "row": 7576 + }, + { + "path": "speech/audio_envelopes_audiobook.m", + "sha256": "cec18a4bf302903d20988ad4efc3eae072ec6b154bd9c29cd1b596a74d973dbb", + "language": "MATLAB", + "lines": 201, + "truncated": false, + "block": 1, + "row": 3855 + }, + { + "path": "speech/audio_envelopes_olsa.m", + "sha256": "5c4efb670f9ec980f3f3b9b0b8723a0ba5bddac073bab093587c0e07f25b6f55", + "language": "MATLAB", + "lines": 276, + "truncated": false, + "block": 1, + "row": 4012 + }, + { + "path": "speech/crosscorrelation/analysis_pipeline_crosscorr.m", + "sha256": "e9e22448095579ce740cdc438ecac637b2bc24e468414dc38cfd0704f7e4ef2a", + "language": "MATLAB", + "lines": 105, + "truncated": false, + "block": 1, + "row": 3423 + }, + { + "path": "speech/crosscorrelation/computation_crosscorr.m", + "sha256": "1d32773c4b1c1fa2f702d03db67fec4540bfea12fc4360134eae4a93ae62f5d6", + "language": "MATLAB", + "lines": 135, + "truncated": false, + "block": 1, + "row": 3687 + }, + { + "path": "speech/crosscorrelation/computation_gavg_crosscorr.m", + "sha256": "f5507979fe5b2167a840b492c0111a3d18c738894fd84f4ae41f6f4ed94718b7", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 1, + "row": 3248 + }, + { + "path": "speech/crosscorrelation/plot_crosscorr.m", + "sha256": "55d86bb04cc174e583f8c9dac2a1ff24b976c4f8c5c37cea5de88475eddb76d7", + "language": "MATLAB", + "lines": 607, + "truncated": false, + "block": 1, + "row": 4270 + }, + { + "path": "speech/crosscorrelation/preprocessing_audio.m", + "sha256": "f3fc4e5ef68fbfe36e2ccddad12ad7bbc76930c66cc32cf62c8f52b499125ac6", + "language": "MATLAB", + "lines": 210, + "truncated": false, + "block": 1, + "row": 3903 + }, + { + "path": "speech/crosscorrelation/preprocessing_crosscorr.m", + "sha256": "3ace22db7a70786daf433a9ee9741e49f3fb01ff60333c2ec542ad3e4d5c7f0d", + "language": "MATLAB", + "lines": 308, + "truncated": false, + "block": 1, + "row": 4075 + }, + { + "path": "speech/decoding/analysis_pipeline_decoding.m", + "sha256": "0608d48391400cb69f7f10d5f7abadf636c542ac4b6ce8dfd6bf9709e64ff2de", + "language": "MATLAB", + "lines": 112, + "truncated": false, + "block": 1, + "row": 3454 + }, + { + "path": "speech/decoding/plot_decoding.m", + "sha256": "0e179e69a63768e1a37a419d2a7ccb0a638794a558ba701d4b51cb8751ecbe5f", + "language": "MATLAB", + "lines": 770, + "truncated": false, + "block": 1, + "row": 4304 + }, + { + "path": "speech/decoding/preprocessing_audiobooks.m", + "sha256": "14716ea7a477ddd65fd8caf1c9bca88f3f00540e2cbac53d0e1104fdbf17d907", + "language": "MATLAB", + "lines": 256, + "truncated": false, + "block": 1, + "row": 4036 + }, + { + "path": "speech/decoding/preprocessing_audiobooks_decoding.m", + "sha256": "9da3ccda85a03f72250d2bd4bbac8f38938a62112319c7ba1fd8020629e96a34", + "language": "MATLAB", + "lines": 314, + "truncated": false, + "block": 1, + "row": 4091 + }, + { + "path": "speech/decoding/preprocessing_olsa.m", + "sha256": "f4d28b1f633bad972f93939c52fd4270ee92ddcfe077ea58f9ec41d57518e392", + "language": "MATLAB", + "lines": 135, + "truncated": false, + "block": 1, + "row": 3670 + }, + { + "path": "speech/decoding/preprocessing_olsa_decoding.m", + "sha256": "8c842f3016819bbd19e0554164fda025c209a83728f7842dde7713b2ae1edd76", + "language": "MATLAB", + "lines": 221, + "truncated": false, + "block": 1, + "row": 3901 + }, + { + "path": "speech/decoding/training_decoding.m", + "sha256": "1ad2928d191f9269a5bc2da0776cbec70b5e44dfa9de324df54cd91bbe5abff2", + "language": "MATLAB", + "lines": 386, + "truncated": false, + "block": 1, + "row": 4225 + }, + { + "path": "speech/settings_speech.m", + "sha256": "6db952e5bda4839e6a2d1e7273b6be5ba43814a8bb3752556d0e99a75a34400a", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 1, + "row": 3387 + } + ] +} \ No newline at end of file diff --git a/manifests/25/zenodo__21334890.json b/manifests/25/zenodo__21334890.json new file mode 100644 index 0000000000000000000000000000000000000000..f9c06afe3cda1ee35d7b715d0cfdb0c536379465 --- /dev/null +++ b/manifests/25/zenodo__21334890.json @@ -0,0 +1,138 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:21334890", + "url": "https://doi.org/10.5281/zenodo.21334890", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "9d523bd56bb0171989bafc1f24cfdec3e878edbfb22786a1f52c0f34f5840615", + "language": "Text", + "lines": 7, + "truncated": false, + "block": 1, + "row": 11771 + }, + { + "path": "calcium_event_classifier/__init__.py", + "sha256": "0eb7ba95e322dae74b12090a6b624eed0e4f35309d1605130890ac8fdc6365a4", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 1, + "row": 5751 + }, + { + "path": "calcium_event_classifier/build_dataset/GUI.py", + "sha256": "c34b79dc500fe93abaa0ce51e758d409504d6bd5e6d54ac1e711d86ac3456ffd", + "language": "Python", + "lines": 507, + "truncated": false, + "block": 1, + "row": 9289 + }, + { + "path": "calcium_event_classifier/build_dataset/manage_h5_files.py", + "sha256": "21f6ae276cd0dbc8c200c182ede8e41cbfc9dcc05f2932d02dc5326123270254", + "language": "Python", + "lines": 495, + "truncated": false, + "block": 1, + "row": 8870 + }, + { + "path": "calcium_event_classifier/build_dataset/manual_annotation_gui.py", + "sha256": "2172786cb167ea91d1b53d787b2c037052783c2b78b76cde65fbde34f37d1d30", + "language": "Python", + "lines": 418, + "truncated": false, + "block": 1, + "row": 8987 + }, + { + "path": "calcium_event_classifier/core/classifier_dff.py", + "sha256": "4a6bd9e71ca81ddd1161afe0c40a64e24711f3720851c2888c9141594eda5b11", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 1, + "row": 7189 + }, + { + "path": "calcium_event_classifier/core/dffdataset.py", + "sha256": "f02df5805b1ba87950258293dce398b4214905674be6521d4f79f5b29346f3f6", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 1, + "row": 7277 + }, + { + "path": "calcium_event_classifier/core/inference.py", + "sha256": "56b071fa920f86be10c287768944a973e961e20a92e88aa611f31624ca0e7820", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 1, + "row": 6760 + }, + { + "path": "calcium_event_classifier/core/plot.py", + "sha256": "568fdcaaa87910d9fd859cc30359c41a8e515816568bb9f58ad704a089b81da0", + "language": "Python", + "lines": 479, + "truncated": false, + "block": 1, + "row": 8932 + }, + { + "path": "calcium_event_classifier/core/train_loop.py", + "sha256": "2b1e9f4f94242458bbebc9b03df828d4044f8523c55bc60e68aafde7d21c71d4", + "language": "Python", + "lines": 315, + "truncated": false, + "block": 1, + "row": 8534 + }, + { + "path": "calcium_event_classifier/core/utils.py", + "sha256": "e89cf5242941aebdafe26fcfa2b587c8d89fce95f04b88d379d69a06d663bbc2", + "language": "Python", + "lines": 292, + "truncated": false, + "block": 1, + "row": 8186 + }, + { + "path": "examples/manual_annotations.ipynb", + "sha256": "908bd4db1fed41510b9eca1438aa61cacf1c34d90d91f299c43c0625f3b274cc", + "language": "Jupyter", + "lines": 242, + "truncated": false, + "block": 1, + "row": 1854 + }, + { + "path": "examples/test_classifier_dff.ipynb", + "sha256": "c026e859020a785b9b6b60d6d52706bdcf38651e0e92572f11ecb7ebad183e01", + "language": "Jupyter", + "lines": 319, + "truncated": false, + "block": 1, + "row": 1924 + }, + { + "path": "examples/train_model_dff.ipynb", + "sha256": "ae9db749b7d6ab96002935b865f7a43ae99fd5a2446eb7316abc444028c3ed89", + "language": "Jupyter", + "lines": 306, + "truncated": false, + "block": 1, + "row": 1897 + } + ] +} \ No newline at end of file diff --git a/manifests/26/github.com__thuretlabkcl__neurofit-rct-statistical-code.json b/manifests/26/github.com__thuretlabkcl__neurofit-rct-statistical-code.json new file mode 100644 index 0000000000000000000000000000000000000000..8c5e234a41743b5d3829a742c5f03ae64e76aeb6 --- /dev/null +++ b/manifests/26/github.com__thuretlabkcl__neurofit-rct-statistical-code.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/thuretlabkcl/neurofit-rct-statistical-code", + "url": "https://github.com/thuretlabkcl/NeuroFit-RCT-Statistical-Code.git", + "host": "github.com", + "commit": "151f24a71135bc98a54a7a7409ac6213c9caed6d", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "4e77f52519101586ee87ff5edc215bb6fc080886c05dfd59189623b923b5a9e6", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2115 + }, + { + "path": "NeuroFit_RCT_Blood-Based_Biomarker_Analysis_Examples.Rmd", + "sha256": "cedb5a918da469cdfb0a320f5b0cb3d3b10aa9512176cee839fcaac57b7d0123", + "language": "R", + "lines": 149, + "truncated": false, + "block": 1, + "row": 10180 + }, + { + "path": "NeuroFit_RCT_Clinical_and_Cognitive_Outcomes_Analysis_Examples.Rmd", + "sha256": "8ff9bbb50288266cb31af82f17298e825a353484eb6d9d9a8f7eca454ce20c62", + "language": "R", + "lines": 279, + "truncated": false, + "block": 1, + "row": 10327 + }, + { + "path": "NeuroFit_RCT_Neurogenesis_Proliferation_Analysis_Examples.Rmd", + "sha256": "7a0ea39f676c2b8957ca1762760a7001260230abae293be9972f2a6b741772ff", + "language": "R", + "lines": 246, + "truncated": false, + "block": 1, + "row": 10288 + }, + { + "path": "README.md", + "sha256": "563ec24cc3eea2a266ccc2ac84be9bdef7bf1b85decb79b1857f3c6a9a72c2cc", + "language": "Text", + "lines": 62, + "truncated": false, + "block": 1, + "row": 11819 + } + ] +} \ No newline at end of file diff --git a/manifests/26/zenodo__19411437.json b/manifests/26/zenodo__19411437.json new file mode 100644 index 0000000000000000000000000000000000000000..0a2b29f8853cb57c78a0edf9c97b3989afc0d517 --- /dev/null +++ b/manifests/26/zenodo__19411437.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:19411437", + "url": "https://doi.org/10.5281/zenodo.19411437", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "Code1.m", + "sha256": "55c170bad58f3e0bcdde63da164fe07c74ad77e2c133cf60b0cd62bff1c86469", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 1, + "row": 2799 + }, + { + "path": "Code2.m", + "sha256": "e76572bf072f8857f7c201732ce2a03368a418ec579c5050c7249681ebf8aef6", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 1, + "row": 3091 + }, + { + "path": "Code3.m", + "sha256": "3221b16411b39d06216878c41f469d065ef4aadd1aa2fb9c4a33e1d08abe80d7", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 1, + "row": 3100 + } + ] +} \ No newline at end of file diff --git a/manifests/27/github.com__allenneuraldynamics__aind-ephys-hybrid-generation.json b/manifests/27/github.com__allenneuraldynamics__aind-ephys-hybrid-generation.json new file mode 100644 index 0000000000000000000000000000000000000000..d7d4c068f234bc0fa678de82d5da3453bcdf7c5f --- /dev/null +++ b/manifests/27/github.com__allenneuraldynamics__aind-ephys-hybrid-generation.json @@ -0,0 +1,48 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/allenneuraldynamics/aind-ephys-hybrid-generation", + "url": "https://github.com/AllenNeuralDynamics/aind-ephys-hybrid-generation", + "host": "github.com", + "commit": "0f70b2e2c9a6c0a0699a8c145f06c5050a7ca569", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "d7609c858f47823b9d7cee46253bffc40e93fd55effa744aa249e97a603c65cb", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1139 + }, + { + "path": "README.md", + "sha256": "4fb0af30b73d9e09c9b2c1f1983403585fc4032afa2a29d77ea2fca5fbee9a21", + "language": "Text", + "lines": 52, + "truncated": false, + "block": 2, + "row": 2622 + }, + { + "path": "code/explore-templates.ipynb", + "sha256": "a4ceea25c65484fa90a2b75974b164364c047dd8cf217b6ac4836d72647d515a", + "language": "Jupyter", + "lines": 300, + "truncated": false, + "block": 2, + "row": 1069 + }, + { + "path": "code/run_capsule.py", + "sha256": "5d7ed77cc589e1391c112a6d1a65c30c083dd086b363d63baa9917bee41f4cd8", + "language": "Python", + "lines": 430, + "truncated": false, + "block": 2, + "row": 2169 + } + ] +} \ No newline at end of file diff --git a/manifests/27/github.com__cancergenomicslab__dmg_onc201.json b/manifests/27/github.com__cancergenomicslab__dmg_onc201.json new file mode 100644 index 0000000000000000000000000000000000000000..1e6ff7ac9e6ec60cab6da637177356ed9e71b333 --- /dev/null +++ b/manifests/27/github.com__cancergenomicslab__dmg_onc201.json @@ -0,0 +1,93 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/cancergenomicslab/dmg_onc201", + "url": "https://github.com/CancerGenomicsLab/DMG_ONC201", + "host": "github.com", + "commit": "6d5efbb554bb8428b07628dd5bd5cdd870ef23d6", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "01_snRNA_preprocessing_cellAnno.R", + "sha256": "9c98e1fe441696ce7883edf20dbe825e42845eb1fad46866c658906018b5cec6", + "language": "R", + "lines": 920, + "truncated": false, + "block": 1, + "row": 10604 + }, + { + "path": "02_snRNA_preprocessing_inferCNV.R", + "sha256": "b5c1185bec8baa892d2676c06f64c8e180f4bca2169ff56ed1bd9bd4cef280a5", + "language": "R", + "lines": 456, + "truncated": false, + "block": 1, + "row": 10573 + }, + { + "path": "03_snRNA_integration.py", + "sha256": "62c4fa0aee56a97229ee26faa7c91fdb8e11bb8a7932ede70fdce54a5fdf8a13", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 1, + "row": 6396 + }, + { + "path": "04_snRNA_hcluster_PE&MES.R", + "sha256": "11ca1c751c3ffa7c4c1d025024c4e7cc1e9f6c0cfd1381f4608863bbc2b83f88", + "language": "R", + "lines": 152, + "truncated": false, + "block": 1, + "row": 10350 + }, + { + "path": "05_snRNA_cellchat.R", + "sha256": "501323b529450af9f4094a6b24c9b40805361a162afd96204facb2c815b109d4", + "language": "R", + "lines": 258, + "truncated": false, + "block": 1, + "row": 10488 + }, + { + "path": "06_snATAC_integration.R", + "sha256": "ec973ff3d62ee9b7816ba798862a973bf30a440421e83672c4bbed676546241c", + "language": "R", + "lines": 249, + "truncated": false, + "block": 1, + "row": 10426 + }, + { + "path": "07_snATAC_hclust_TF.R", + "sha256": "f64bb59fbc8ccf09658328d051a47f43933fba8eb7d2de84b2bdce9940a6e0be", + "language": "R", + "lines": 86, + "truncated": false, + "block": 1, + "row": 10218 + }, + { + "path": "LICENSE", + "sha256": "ac230a4347fe36fa1b29acc9936d02ee7350055affca346817c49835cb5b79c7", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2151 + }, + { + "path": "README.md", + "sha256": "97919b402def3ee11ea2bb642057f8b3b8d825a3c75eaf695910b5c38307a8cb", + "language": "Text", + "lines": 37, + "truncated": false, + "block": 1, + "row": 11878 + } + ] +} \ No newline at end of file diff --git a/manifests/28/github.com__vnckppl__fingertappingtask.json b/manifests/28/github.com__vnckppl__fingertappingtask.json new file mode 100644 index 0000000000000000000000000000000000000000..2e561c32dd50c4c775463cc7fd2a640c50797c0e --- /dev/null +++ b/manifests/28/github.com__vnckppl__fingertappingtask.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/vnckppl/fingertappingtask", + "url": "https://github.com/vnckppl/FingerTappingTask", + "host": "github.com", + "commit": "a1c8093b0bba7c4f4ed5a5c9a783b4062b0a0112", + "license": "AGPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "FingerTapping_20190906b_lastrun.py", + "sha256": "6b35a5b3bd0cd72de649e9c873a208712aec424df2b34bfb504204688cec1c72", + "language": "Python", + "lines": 1868, + "truncated": false, + "block": 1, + "row": 9838 + }, + { + "path": "LICENSE", + "sha256": "8486a10c4393cee1c25392769ddd3b2d6c242d6ec7928e1414efff7dfb2f07ef", + "language": "License", + "lines": 661, + "truncated": false, + "block": 1, + "row": 2230 + } + ] +} \ No newline at end of file diff --git a/manifests/2c/github.com__facebookresearch__detectron2.json b/manifests/2c/github.com__facebookresearch__detectron2.json new file mode 100644 index 0000000000000000000000000000000000000000..f594c154e50632fb1dfb8ef3cd36af08a052d64e --- /dev/null +++ b/manifests/2c/github.com__facebookresearch__detectron2.json @@ -0,0 +1,4737 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/facebookresearch/detectron2", + "url": "https://github.com/facebookresearch/detectron2/blob/main/projects/DensePose/configs/evolution/densepose_R_50_FPN_DL_WC1M_3x_Atop10P_CA_B_finesegm.yaml", + "host": "github.com", + "commit": "a2f4a8771ab77e8411c26b27f24f9489a28a2453", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": ".github/import-tests.sh", + "sha256": "c1b62935b4b56083501eed75abcd571442b29fa0238461d5aeab8a5a00ba1c01", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11257 + }, + { + "path": ".github/workflows/levenshtein.js", + "sha256": "1a0fe9a75ad6f571e50e28353a5b0250e43aa5f15e4201c325b356d815f2ed7b", + "language": "JavaScript", + "lines": 44, + "truncated": false, + "block": 1, + "row": 1053 + }, + { + "path": "LICENSE", + "sha256": "ceb78ee847e76f67a6a521a5732dc3373aed07eee003d738a572dc96705f08ff", + "language": "License", + "lines": 202, + "truncated": false, + "block": 1, + "row": 2212 + }, + { + "path": "README.md", + "sha256": "54df9b531f3507801a27973f8f2f904375716036d9869424ccacd033e8889cc3", + "language": "Text", + "lines": 60, + "truncated": false, + "block": 1, + "row": 11850 + }, + { + "path": "configs/COCO-Detection/fcos_R_50_FPN_1x.py", + "sha256": "16af508897dd43b142791a7a7004f5d6c20c0ab3535a27f9cd9630f49ee07344", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 1, + "row": 5316 + }, + { + "path": "configs/COCO-Detection/retinanet_R_50_FPN_1x.py", + "sha256": "9b4c5fc1dbfb9ad9e2e30d381a3f2f81575b8abee06d7ce88af6b57a1f50ace4", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 1, + "row": 5324 + }, + { + "path": "configs/COCO-InstanceSegmentation/mask_rcnn_R_50_C4_1x.py", + "sha256": "ab9fc30426675b580ccacf45ea231bf7b4521d4c6059eb00100f090e1abbcd90", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 1, + "row": 5251 + }, + { + "path": "configs/COCO-InstanceSegmentation/mask_rcnn_R_50_FPN_1x.py", + "sha256": "b65b5419ce06e00facea7db1b62158146912c7ad60e75b58817702e1ff6ea49a", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 1, + "row": 5264 + }, + { + "path": "configs/COCO-InstanceSegmentation/mask_rcnn_regnetx_4gf_dds_fpn_1x.py", + "sha256": "9457b37050d4e0752460368a1a356e2418391e5167d7d92470a0dc4381b24fb6", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 1, + "row": 5839 + }, + { + "path": "configs/COCO-InstanceSegmentation/mask_rcnn_regnety_4gf_dds_fpn_1x.py", + "sha256": "d1c666a7d7d9eb7d637b6698567cd66925c26129cf1178e06a8bcf2bcffc8a28", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 1, + "row": 5849 + }, + { + "path": "configs/COCO-Keypoints/keypoint_rcnn_R_50_FPN_1x.py", + "sha256": "3a8563118a133943e73a5b9a7dde920c22b93c5ac44ac74bcb95f8825dd7e1c1", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 1, + "row": 5271 + }, + { + "path": "configs/COCO-PanopticSegmentation/panoptic_fpn_R_50_1x.py", + "sha256": "b4d4c671ff1703ae68c358513d7d5da51883df655145d6c1efce49cdf02bd165", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 1, + "row": 5279 + }, + { + "path": "configs/Misc/mmdet_mask_rcnn_R_50_FPN_1x.py", + "sha256": "bccd893c73cb40791ee5a09529577e8862d1c7bcc3ac4108d2d8714d06779528", + "language": "Python", + "lines": 152, + "truncated": false, + "block": 1, + "row": 7544 + }, + { + "path": "configs/Misc/torchvision_imagenet_R_50.py", + "sha256": "0d6368deae5e6fd761e1e7c7c19efbb369c152672c157a8b14d5451025f22439", + "language": "Python", + "lines": 149, + "truncated": false, + "block": 1, + "row": 7294 + }, + { + "path": "configs/common/coco_schedule.py", + "sha256": "c80536a9b1f1ae7dde115e58587dca644564c289495c6d84c04aad9d51e96fe6", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 1, + "row": 6101 + }, + { + "path": "configs/common/data/coco.py", + "sha256": "5bd859bb9070ad44e019212fefee0f418f99152b34113ce569236c689c6d63b2", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 1, + "row": 5941 + }, + { + "path": "configs/common/data/coco_keypoint.py", + "sha256": "dc7a953274026d17c23107600a8fe6fe4f324846fea9793936031c99ce06b601", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 1, + "row": 5355 + }, + { + "path": "configs/common/data/coco_panoptic_separated.py", + "sha256": "90e096e9bc2818aebda269e7314747511e566438a767587673a187d5522e6964", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 1, + "row": 5491 + }, + { + "path": "configs/common/data/constants.py", + "sha256": "18567397203e522b34cd3a1adeee2ac5678ac094c6567276b7b4cc79f11385c0", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 1, + "row": 5345 + }, + { + "path": "configs/common/models/cascade_rcnn.py", + "sha256": "168d6416d9cbc39b086543b1a9c9fe55228862479af8e816d74453d4e9747732", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 1, + "row": 5866 + }, + { + "path": "configs/common/models/fcos.py", + "sha256": "40f3e4c3adc12a2cce9f86b8ef8fde791b4e85c0d518768bcd5abda46aa895a3", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 1, + "row": 5455 + }, + { + "path": "configs/common/models/keypoint_rcnn_fpn.py", + "sha256": "ea733dd367625b8afb930f263ff1a72c26801937288abc134bf33814982ee012", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 1, + "row": 5823 + }, + { + "path": "configs/common/models/mask_rcnn_c4.py", + "sha256": "1ee7ffbb12a430d791a8f836d0c432b364b512c80bf303f674e63d267bc633cb", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 1, + "row": 6853 + }, + { + "path": "configs/common/models/mask_rcnn_fpn.py", + "sha256": "f285dbe34e15a6d40a4aa013b83e7395bd6765aba3b2eef5daf18dd6d02d9046", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 1, + "row": 6989 + }, + { + "path": "configs/common/models/mask_rcnn_vitdet.py", + "sha256": "3bccb8767e02517258dc474f4c8e8e9a1a01dd6f484df5b09a775a66d3e6ed1e", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 1, + "row": 6091 + }, + { + "path": "configs/common/models/panoptic_fpn.py", + "sha256": "c556d52f5ed09340bc7a4c11a390067847f2ab7f733feb98721d58809c9fb376", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 1, + "row": 5451 + }, + { + "path": "configs/common/models/retinanet.py", + "sha256": "8ab6b30a9cd541fcc227fba43462a4141ba72f17870de726e6398437a7cf3b64", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 1, + "row": 6303 + }, + { + "path": "configs/common/optim.py", + "sha256": "71722020ccce895b7f36a85ab72aef3fa32ad3e159b006354a5976cd38cbabb7", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 1, + "row": 5525 + }, + { + "path": "configs/common/train.py", + "sha256": "88c453be623d5eac110a9a72be31e9c1da896890296d1195eaa6e05a130b4fc9", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 1, + "row": 5475 + }, + { + "path": "configs/new_baselines/mask_rcnn_R_101_FPN_100ep_LSJ.py", + "sha256": "a97ba7c71e947e3f34b0f813ab89419ff5f9b64d3e159b5f091ad4ac46888bf4", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 1, + "row": 5133 + }, + { + "path": "configs/new_baselines/mask_rcnn_R_101_FPN_200ep_LSJ.py", + "sha256": "43d197ed9307b6e59a2b8420b4f4b3983b3987598d254906665cab370401d288", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 1, + "row": 5234 + }, + { + "path": "configs/new_baselines/mask_rcnn_R_101_FPN_400ep_LSJ.py", + "sha256": "cb0e6532af97912b2139d8a8a65fd2a8710f433ae53a8355199150ea2729b4d7", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 1, + "row": 5237 + }, + { + "path": "configs/new_baselines/mask_rcnn_R_50_FPN_100ep_LSJ.py", + "sha256": "5e388f636c84ad4353cf17f216c7eb66ab70aa6026dc5a2c10aafbc0ce1b9a4c", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 1, + "row": 6536 + }, + { + "path": "configs/new_baselines/mask_rcnn_R_50_FPN_200ep_LSJ.py", + "sha256": "7db763c56fe2fb3f0baf332ff92d986232cb730012755b12ce753931eaca8606", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 1, + "row": 5230 + }, + { + "path": "configs/new_baselines/mask_rcnn_R_50_FPN_400ep_LSJ.py", + "sha256": "48c67e46672cb7ca2a4602e1eb10678a0d0a431eda665b41bf0bf460a63444fe", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 1, + "row": 5229 + }, + { + "path": "configs/new_baselines/mask_rcnn_R_50_FPN_50ep_LSJ.py", + "sha256": "c4c8b1044b343e6a73b26043b36da583d4dae9c2460cbe9b8c514920ac47226d", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 1, + "row": 5236 + }, + { + "path": "configs/new_baselines/mask_rcnn_regnetx_4gf_dds_FPN_100ep_LSJ.py", + "sha256": "9423bc94ca06ff3e9a0058e8f6f40e8fd4b40630502c14a95916be13b1015204", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 1, + "row": 5604 + }, + { + "path": "configs/new_baselines/mask_rcnn_regnetx_4gf_dds_FPN_200ep_LSJ.py", + "sha256": "6647f4209bc69ea2caa1c37db00f005245a0873d11c2cbaf7401c822b4ba9ffb", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 1, + "row": 5246 + }, + { + "path": "configs/new_baselines/mask_rcnn_regnetx_4gf_dds_FPN_400ep_LSJ.py", + "sha256": "b8596d544e9827c3e305712e79007078e49154698f5c2812f09828cb83c20675", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 1, + "row": 5248 + }, + { + "path": "configs/new_baselines/mask_rcnn_regnety_4gf_dds_FPN_100ep_LSJ.py", + "sha256": "db295046b9c52dc2cbe078c3f904a1c62f41076389398dc00eef406ad154d576", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 1, + "row": 5624 + }, + { + "path": "configs/new_baselines/mask_rcnn_regnety_4gf_dds_FPN_200ep_LSJ.py", + "sha256": "15781846eb3551c4f9ba34ca3ad98d205623503eaf15c723b7d250341f07a9c3", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 1, + "row": 5245 + }, + { + "path": "configs/new_baselines/mask_rcnn_regnety_4gf_dds_FPN_400ep_LSJ.py", + "sha256": "804ca0910179116badb027f842c42b9302093cabadf95db2c499d25b052183af", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 1, + "row": 5247 + }, + { + "path": "datasets/prepare_ade20k_sem_seg.py", + "sha256": "f1854f287caa384a5fc2fd8cfcc206d368163665ea56913f0eed9663d4b517fb", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 1, + "row": 5651 + }, + { + "path": "datasets/prepare_cocofied_lvis.py", + "sha256": "1a176f13991fbdc6291829ddfb72527453f3f315a25804c3dcb1ba9970b972cb", + "language": "Python", + "lines": 176, + "truncated": false, + "block": 1, + "row": 8089 + }, + { + "path": "datasets/prepare_for_tests.sh", + "sha256": "af7f8ed5266a7e8e544976f5809851c764eec1eb5a2f121ca251d37caf23df68", + "language": "Shell", + "lines": 31, + "truncated": false, + "block": 1, + "row": 11489 + }, + { + "path": "datasets/prepare_panoptic_fpn.py", + "sha256": "494d884be9be02caf59cee0cb0568c08198be14058a0ad18d6973092daf47af8", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 1, + "row": 7256 + }, + { + "path": "demo/demo.py", + "sha256": "f88dfecd9e0cfca59797ec43ee244d2bbe24d07cb1185bdefd38823759fb30e8", + "language": "Python", + "lines": 194, + "truncated": false, + "block": 1, + "row": 8005 + }, + { + "path": "demo/predictor.py", + "sha256": "6aa223eb5e7edbf13efad5838f9fea392d69cf019292fc4602ec731b007883e6", + "language": "Python", + "lines": 220, + "truncated": false, + "block": 1, + "row": 8129 + }, + { + "path": "detectron2/__init__.py", + "sha256": "13ad28f1c53e186f8c26bab8e3afeb26834659316e2260c4f64e8a539b35091a", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 1, + "row": 5191 + }, + { + "path": "detectron2/checkpoint/__init__.py", + "sha256": "4818fed258cf788aa4148e7fc7c5d43ca6865fe2ff9b9f5346ea1926f0017dca", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 1, + "row": 5263 + }, + { + "path": "detectron2/checkpoint/c2_model_loading.py", + "sha256": "d8f468250d6bc5b6a618efaa5143b1a28f4f4155999ff6217c150584c11849f6", + "language": "Python", + "lines": 406, + "truncated": false, + "block": 1, + "row": 9206 + }, + { + "path": "detectron2/checkpoint/catalog.py", + "sha256": "c4edd1b0bfd05292c4075cccad5cf115ada358ad58432833bd9e3a30bf644e36", + "language": "Python", + "lines": 115, + "truncated": false, + "block": 1, + "row": 7622 + }, + { + "path": "detectron2/checkpoint/detection_checkpoint.py", + "sha256": "7b08eed32be62a72b750956933bbdaed2a79d826b9a89b18357bb4e264da7df8", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 1, + "row": 7780 + }, + { + "path": "detectron2/config/__init__.py", + "sha256": "4448babfba2044cad5388981fa513664be317514800155d43407034c5f6c335f", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 1, + "row": 5448 + }, + { + "path": "detectron2/config/compat.py", + "sha256": "d7bce845c7cd3827f22687d4b035fd830490f960dce4423484570192d573e9f2", + "language": "Python", + "lines": 229, + "truncated": false, + "block": 1, + "row": 8139 + }, + { + "path": "detectron2/config/config.py", + "sha256": "d6aecd2b13f7b6119a163aeb279b668127fb1ac6b789af7dd36fc0cd8a4e5d39", + "language": "Python", + "lines": 265, + "truncated": false, + "block": 1, + "row": 8382 + }, + { + "path": "detectron2/config/defaults.py", + "sha256": "3f0dc374811b83ab81c4d5bf0b8d7d6afb86c683a8a67aa9d46ea5a39cacd7f5", + "language": "Python", + "lines": 656, + "truncated": false, + "block": 1, + "row": 9604 + }, + { + "path": "detectron2/config/instantiate.py", + "sha256": "433dc1e25fa79f3a60dc274fda5e06151fe6d049e7681d3b425dbdf4ef050e72", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 1, + "row": 6764 + }, + { + "path": "detectron2/config/lazy.py", + "sha256": "ab5982cf290f2129a0a09eada117880e10aabd071271ddd2064acbd312d96b7f", + "language": "Python", + "lines": 439, + "truncated": false, + "block": 1, + "row": 9134 + }, + { + "path": "detectron2/data/__init__.py", + "sha256": "428bfb4c1ab804fd8643f580025144d3da5b0c3d68509b7e32178ac629c8a942", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 1, + "row": 5478 + }, + { + "path": "detectron2/data/benchmark.py", + "sha256": "32fa3db42a3d56c1103b7c21fcb1d1ac54f88e1eae53d09254dd35a3aab75ed2", + "language": "Python", + "lines": 225, + "truncated": false, + "block": 1, + "row": 8039 + }, + { + "path": "detectron2/data/build.py", + "sha256": "2f5f8e498d7ccbf92e24076c04eeafa38507f0b476f952f0a51fe0b03968d6c8", + "language": "Python", + "lines": 694, + "truncated": false, + "block": 1, + "row": 9540 + }, + { + "path": "detectron2/data/catalog.py", + "sha256": "c3585ced4e6732fbe0334d7f99f9df377f2940d84e2b1a569c9cbd1192a41754", + "language": "Python", + "lines": 236, + "truncated": false, + "block": 1, + "row": 8008 + }, + { + "path": "detectron2/data/common.py", + "sha256": "d3d85b0e6f3384c4a87b22ebf225adcaf089009cc6e0a813ccea6c55f4693b71", + "language": "Python", + "lines": 339, + "truncated": false, + "block": 1, + "row": 8804 + }, + { + "path": "detectron2/data/dataset_mapper.py", + "sha256": "d7db732f0c52c18044f61a45af8b90f450ee055f09d4010bcb1f62a8aa35ed20", + "language": "Python", + "lines": 191, + "truncated": false, + "block": 1, + "row": 8190 + }, + { + "path": "detectron2/data/datasets/__init__.py", + "sha256": "d937d5f32355fe6664afc046a760a2bff4d94de1a718b4c29bcc0d35e6d005f6", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 1, + "row": 5406 + }, + { + "path": "detectron2/data/datasets/builtin.py", + "sha256": "c7a61fd9cd6df91524e6ccf1db8e67045d0a983e7014312ca6482474b66b8978", + "language": "Python", + "lines": 259, + "truncated": false, + "block": 1, + "row": 8527 + }, + { + "path": "detectron2/data/datasets/builtin_meta.py", + "sha256": "855baa3c4acdc58934bb969792d8e40c210b646049f6d1b5e305463b52df6eaa", + "language": "Python", + "lines": 350, + "truncated": false, + "block": 1, + "row": 9388 + }, + { + "path": "detectron2/data/datasets/cityscapes.py", + "sha256": "0a44bb2c44f3889ff473a452df3fe863519e566babe1bec82886962d27c6e9c9", + "language": "Python", + "lines": 337, + "truncated": false, + "block": 1, + "row": 8898 + }, + { + "path": "detectron2/data/datasets/cityscapes_panoptic.py", + "sha256": "507982156403829ceaf13e285e1a1c87088ed14c17b3a55d4ae17a6171729ddc", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 1, + "row": 8124 + }, + { + "path": "detectron2/data/datasets/coco.py", + "sha256": "d0b42e0da1964aeb4a3d6c05a2ecdf2c96ca5c2472110601b51fcc8ff38e26b9", + "language": "Python", + "lines": 556, + "truncated": false, + "block": 1, + "row": 9448 + }, + { + "path": "detectron2/data/datasets/coco_panoptic.py", + "sha256": "50f1e8c1763fef86c5df624d0af330898555cf6d18b7dc8e925aedb6a76ec8ee", + "language": "Python", + "lines": 228, + "truncated": false, + "block": 1, + "row": 8353 + }, + { + "path": "detectron2/data/datasets/lvis.py", + "sha256": "a1960ec8b4870665de7ce8fb61bef9ad673ab962ee7851fa6d9bce33e84dd35c", + "language": "Python", + "lines": 250, + "truncated": false, + "block": 1, + "row": 8448 + }, + { + "path": "detectron2/data/datasets/lvis_v0_5_categories.py", + "sha256": "08659077b4716649e0a585c798b70c560a42ad59d5d22d8e125990773d9c96af", + "language": "Python", + "lines": 12, + "truncated": true, + "block": 1, + "row": 9881 + }, + { + "path": "detectron2/data/datasets/lvis_v1_categories.py", + "sha256": "d8955489c37a6232c5cd3ba5a9c0f871c5008f1a7634c2b0ed4c4b049efa32d0", + "language": "Python", + "lines": 15, + "truncated": true, + "block": 1, + "row": 9883 + }, + { + "path": "detectron2/data/datasets/lvis_v1_category_image_count.py", + "sha256": "3937eddda44ecf22fe76e7cbede79d76f5c5acb9a408c955f4e9202c109341c0", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 1, + "row": 9716 + }, + { + "path": "detectron2/data/datasets/pascal_voc.py", + "sha256": "978f51a5f0aa5d9d65f4a5739bebe695fc0a9d88480dd7d50dfa4f15313cbb9a", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 1, + "row": 6816 + }, + { + "path": "detectron2/data/datasets/register_coco.py", + "sha256": "c2d864ddbc0032bd78ebf2ddfd06c563d9900c5d0ce8cf175b8ff52a49ad017c", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5140 + }, + { + "path": "detectron2/data/detection_utils.py", + "sha256": "79576cdad97b04c1f712eb8342b53d76880aea1c5e17eddb500307d2f42ec4b9", + "language": "Python", + "lines": 662, + "truncated": false, + "block": 1, + "row": 9436 + }, + { + "path": "detectron2/data/samplers/__init__.py", + "sha256": "01c03275aa6acf6ef180bd168bc44c1c81293c6c067749740e45bc2877e259b2", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5321 + }, + { + "path": "detectron2/data/samplers/distributed_sampler.py", + "sha256": "c5ce73743ba8be141e2cbe0b065f0852275365f0265380ce46531c0fb454e33a", + "language": "Python", + "lines": 287, + "truncated": false, + "block": 1, + "row": 8784 + }, + { + "path": "detectron2/data/samplers/grouped_batch_sampler.py", + "sha256": "e102484f5bd27ab828de8db66a726fa7bac27c3e78b966f5fbbd8d1f6ec9919c", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 1, + "row": 6247 + }, + { + "path": "detectron2/data/transforms/__init__.py", + "sha256": "c65590d54d5345fe48317ee40d0158d031bf73caa5b6b4631e35bbedbeabf592", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 1, + "row": 5373 + }, + { + "path": "detectron2/data/transforms/augmentation.py", + "sha256": "0db2a372a094393fafbfd11557a1a4d345ff491f515f0e156afb7b95b96b5731", + "language": "Python", + "lines": 380, + "truncated": false, + "block": 1, + "row": 8944 + }, + { + "path": "detectron2/data/transforms/augmentation_impl.py", + "sha256": "5f44999a3c613104b55be0b790f8846b782cd956d7ad73d899bf323966af83b1", + "language": "Python", + "lines": 736, + "truncated": false, + "block": 1, + "row": 9543 + }, + { + "path": "detectron2/data/transforms/transform.py", + "sha256": "2e6466909d40388241a946eb26abe6ec5119f5f9e3f67ff1c0630648ecbfe5cc", + "language": "Python", + "lines": 351, + "truncated": false, + "block": 1, + "row": 8825 + }, + { + "path": "detectron2/engine/__init__.py", + "sha256": "a7d0e085e85a242459c6bac0bacf0647a703b42300dd98db57ab0d90ab7a59e8", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 1, + "row": 5377 + }, + { + "path": "detectron2/engine/defaults.py", + "sha256": "4a6124fa20f376caf497db3b17cc3c7a266289e213b6302c52ded3f7a6cfe0d4", + "language": "Python", + "lines": 751, + "truncated": false, + "block": 1, + "row": 9571 + }, + { + "path": "detectron2/engine/hooks.py", + "sha256": "414bd95026b486a482f8426a2f385b56c2f1bed7390329bb7780cddf0ff0d52a", + "language": "Python", + "lines": 690, + "truncated": false, + "block": 1, + "row": 9498 + }, + { + "path": "detectron2/engine/launch.py", + "sha256": "8e3d12bd5ac7da5d8b18d90e53c9026e483bcd573761dad47c5da7e4fcc31ada", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 1, + "row": 7105 + }, + { + "path": "detectron2/engine/train_loop.py", + "sha256": "fb22b94b44f845be9d9f0d2428c31517a45eccecc87b1eb49230b975c884e882", + "language": "Python", + "lines": 527, + "truncated": false, + "block": 1, + "row": 9232 + }, + { + "path": "detectron2/evaluation/__init__.py", + "sha256": "7e916fa03704066c2ea478e2f2e32d508ec04ef8e98023d07e5d61abe5accb00", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 1, + "row": 5496 + }, + { + "path": "detectron2/evaluation/cityscapes_evaluation.py", + "sha256": "f733e44e31b264a590f52a42fbb49299e9412cb1a534790c3779ed659c72a275", + "language": "Python", + "lines": 199, + "truncated": false, + "block": 1, + "row": 8275 + }, + { + "path": "detectron2/evaluation/coco_evaluation.py", + "sha256": "b8fbf8cf82986b7b45e31aafbdae7dcabb3cafa934844a132d9fc3f21fdb2b3d", + "language": "Python", + "lines": 722, + "truncated": false, + "block": 1, + "row": 9614 + }, + { + "path": "detectron2/evaluation/evaluator.py", + "sha256": "0e5aa633e85905a2e1e338c2fe6aa7cabec07567ed22739e2024f85262816dce", + "language": "Python", + "lines": 235, + "truncated": false, + "block": 1, + "row": 8286 + }, + { + "path": "detectron2/evaluation/fast_eval_api.py", + "sha256": "86acd8cffd96e882571ddec96042a72170f353a405a676277a295363635a210e", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 1, + "row": 7476 + }, + { + "path": "detectron2/evaluation/lvis_evaluation.py", + "sha256": "31043552a01918ad2d1dc2e8b0696c03b522f2cf48f9a1d65f7f0a0a627b9257", + "language": "Python", + "lines": 380, + "truncated": false, + "block": 1, + "row": 9014 + }, + { + "path": "detectron2/evaluation/panoptic_evaluation.py", + "sha256": "c5bcff01a3f64f6d3b8d29a8ec292db397f3498fb59878e3374899c15398f764", + "language": "Python", + "lines": 199, + "truncated": false, + "block": 1, + "row": 8062 + }, + { + "path": "detectron2/evaluation/pascal_voc_evaluation.py", + "sha256": "4bc623890593d764a48c4e68df20516fa425f194eaad69fc6a879f6603bf5341", + "language": "Python", + "lines": 300, + "truncated": false, + "block": 1, + "row": 8609 + }, + { + "path": "detectron2/evaluation/rotated_coco_evaluation.py", + "sha256": "55816d89c6958b45bea5ecbf6d6e5e007ca5db84e07a7dc1e4a50762e3b1e691", + "language": "Python", + "lines": 209, + "truncated": false, + "block": 1, + "row": 8090 + }, + { + "path": "detectron2/evaluation/sem_seg_evaluation.py", + "sha256": "60a7e6f5341807984c4f2f9f0ab08c91ac06c8b3714ae320ff43bed331550407", + "language": "Python", + "lines": 265, + "truncated": false, + "block": 1, + "row": 8678 + }, + { + "path": "detectron2/evaluation/testing.py", + "sha256": "685394405c496dba97e08617b5fedeb13be134c70c2509563ea56dad8c77d5f4", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 1, + "row": 6585 + }, + { + "path": "detectron2/export/__init__.py", + "sha256": "40bd6d2b9093cd01c462f475df8b4338194b139058836e616858bbca0563e4b8", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 1, + "row": 5498 + }, + { + "path": "detectron2/export/api.py", + "sha256": "f0016e9124b030d8e76b2a6731dbfeef499b5c17ee732cc2acc1665dfb54b219", + "language": "Python", + "lines": 230, + "truncated": false, + "block": 1, + "row": 8381 + }, + { + "path": "detectron2/export/c10.py", + "sha256": "95c056a92d672516850ae2e4cd3fc9add8a3f979843a4c1c5b89cf40e934fd30", + "language": "Python", + "lines": 576, + "truncated": false, + "block": 1, + "row": 9413 + }, + { + "path": "detectron2/export/caffe2_export.py", + "sha256": "e2629991e7b56b78d2d51261bf9888da4b6881bcf507ed5230301f4bf9d2b0ac", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 1, + "row": 8080 + }, + { + "path": "detectron2/export/caffe2_inference.py", + "sha256": "77999b559bb557993900c9b0927230cb4a06e94d19fe4a153a32d333ab77d8a0", + "language": "Python", + "lines": 161, + "truncated": false, + "block": 1, + "row": 7880 + }, + { + "path": "detectron2/export/caffe2_modeling.py", + "sha256": "e6fec23076eacc50ae94d82f43edf0be142a675e82ee4d55c84599dca56d9b2d", + "language": "Python", + "lines": 420, + "truncated": false, + "block": 1, + "row": 9171 + }, + { + "path": "detectron2/export/caffe2_patch.py", + "sha256": "0f8bf26bda5b348d296a296af4060b2f063b5b545bf0fac4d184cfcc1086b440", + "language": "Python", + "lines": 189, + "truncated": false, + "block": 1, + "row": 7889 + }, + { + "path": "detectron2/export/flatten.py", + "sha256": "f398a7ec3b1ab92257a7472548b2ab3f66e2566f26981dc160129a20eab0d5fa", + "language": "Python", + "lines": 330, + "truncated": false, + "block": 1, + "row": 8737 + }, + { + "path": "detectron2/export/shared.py", + "sha256": "c9f023f64da67a4cf42492022c80090b03bf937673278cb0563f3114dc2162e4", + "language": "Python", + "lines": 1040, + "truncated": false, + "block": 1, + "row": 9703 + }, + { + "path": "detectron2/export/torchscript.py", + "sha256": "ef192ec75f0d8bc5722a8e3ad3c2910f2d5607ba02b5a076e20efb5edb6a09d4", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 1, + "row": 7447 + }, + { + "path": "detectron2/export/torchscript_patch.py", + "sha256": "74539f8bf5eafd6edb75a6cd7b45890d1896508e3c6162a620251517d39343d6", + "language": "Python", + "lines": 406, + "truncated": false, + "block": 1, + "row": 8695 + }, + { + "path": "detectron2/layers/__init__.py", + "sha256": "27e14d18bd2e133e4a79d80515ac299cd2461dc7841b5e7c755cec44e4465172", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 1, + "row": 5640 + }, + { + "path": "detectron2/layers/aspp.py", + "sha256": "3a9b3af8560d6f585a1fede14713786da4b57f409f947271d5eff18b98a00a27", + "language": "Python", + "lines": 144, + "truncated": false, + "block": 1, + "row": 7644 + }, + { + "path": "detectron2/layers/batch_norm.py", + "sha256": "2673a4199c27f17ce7386659abeaec10208b271066aa79edfaccf64a91d32c3a", + "language": "Python", + "lines": 353, + "truncated": false, + "block": 1, + "row": 8927 + }, + { + "path": "detectron2/layers/blocks.py", + "sha256": "10a893dc3874c6083f9ac242bb661aa93fb38115b8208e2c306f50557adc9a41", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 1, + "row": 6768 + }, + { + "path": "detectron2/layers/csrc/ROIAlignRotated/ROIAlignRotated.h", + "sha256": "c43fc58a1007c5a7a4b348645e6078f0cb0867200f7d42cbc6d1d7dbe079698a", + "language": "C/C++", + "lines": 115, + "truncated": false, + "block": 1, + "row": 372 + }, + { + "path": "detectron2/layers/csrc/ROIAlignRotated/ROIAlignRotated_cpu.cpp", + "sha256": "04958a5c528abd2c7a2836abc1cab601d5637299540c76522b6a834acd9e6883", + "language": "C++", + "lines": 522, + "truncated": false, + "block": 1, + "row": 278 + }, + { + "path": "detectron2/layers/csrc/ROIAlignRotated/ROIAlignRotated_cuda.cu", + "sha256": "477940208dce6e0aebc14a4035e8c9beb8c821217a9d75d8649c51201e9cccbd", + "language": "CUDA", + "lines": 445, + "truncated": false, + "block": 1, + "row": 450 + }, + { + "path": "detectron2/layers/csrc/box_iou_rotated/box_iou_rotated.h", + "sha256": "0f3166b53f5ae7df2f8e398f1b413853b4234f0fdf7b3df768e37fc81bc5a70e", + "language": "C/C++", + "lines": 35, + "truncated": false, + "block": 1, + "row": 316 + }, + { + "path": "detectron2/layers/csrc/box_iou_rotated/box_iou_rotated_cpu.cpp", + "sha256": "36fb1328a2e415bc9e56607f9d275ce12122890d5a38edd247ac73175b93ae21", + "language": "C++", + "lines": 39, + "truncated": false, + "block": 1, + "row": 212 + }, + { + "path": "detectron2/layers/csrc/box_iou_rotated/box_iou_rotated_cuda.cu", + "sha256": "896ea23f033cd45af459c45e8c6727be2edae3b9099a2f169bd6a2952f138d03", + "language": "CUDA", + "lines": 130, + "truncated": false, + "block": 1, + "row": 443 + }, + { + "path": "detectron2/layers/csrc/box_iou_rotated/box_iou_rotated_utils.h", + "sha256": "8540cf5a4652ce8c1b3e9f98aa277c0920c7778f4356545b73df70547b684a0b", + "language": "C/C++", + "lines": 392, + "truncated": false, + "block": 1, + "row": 425 + }, + { + "path": "detectron2/layers/csrc/cocoeval/cocoeval.cpp", + "sha256": "b0927765ab8418842a0dda996355a4ca55362714abcdac95463ca7e4ee2a34c5", + "language": "C++", + "lines": 507, + "truncated": false, + "block": 1, + "row": 281 + }, + { + "path": "detectron2/layers/csrc/cocoeval/cocoeval.h", + "sha256": "ee882afd529e9b13e659e67de10a3e35cb7cf627a56920f1df87bcf05aade258", + "language": "C/C++", + "lines": 88, + "truncated": false, + "block": 1, + "row": 392 + }, + { + "path": "detectron2/layers/csrc/cuda_version.cu", + "sha256": "987c697291f07794cddf441a0d7b5fed718654912917d5d26052be65bc8de813", + "language": "CUDA", + "lines": 26, + "truncated": false, + "block": 1, + "row": 441 + }, + { + "path": "detectron2/layers/csrc/deformable/deform_conv.h", + "sha256": "ee50ee4833335788c1c2ceff53be9eceb4b593e1244fe7a35a545d11e8be4dfc", + "language": "C/C++", + "lines": 377, + "truncated": false, + "block": 1, + "row": 422 + }, + { + "path": "detectron2/layers/csrc/deformable/deform_conv_cuda.cu", + "sha256": "a10f559b9664f83de2da3096a07994f104c4cea4e36b18cd8b00fed039b32ed1", + "language": "CUDA", + "lines": 1223, + "truncated": false, + "block": 1, + "row": 453 + }, + { + "path": "detectron2/layers/csrc/deformable/deform_conv_cuda_kernel.cu", + "sha256": "22bffd1646514554fe7eb375e1687e40c1e8d652f544be57701cc7ee7364f147", + "language": "CUDA", + "lines": 1288, + "truncated": false, + "block": 1, + "row": 454 + }, + { + "path": "detectron2/layers/csrc/nms_rotated/nms_rotated.h", + "sha256": "253559fbfe03330a5153eec44db866cb2b92ebe1eee764169ef6de9fc59287f6", + "language": "C/C++", + "lines": 39, + "truncated": false, + "block": 1, + "row": 321 + }, + { + "path": "detectron2/layers/csrc/nms_rotated/nms_rotated_cpu.cpp", + "sha256": "04c47952b30d58f0f1f8e8a17b13817ff8f730ce8cb062510eb8b74bc6791cb0", + "language": "C++", + "lines": 75, + "truncated": false, + "block": 1, + "row": 225 + }, + { + "path": "detectron2/layers/csrc/nms_rotated/nms_rotated_cuda.cu", + "sha256": "1176f9223426e87efd32eab0a5517932be1b05ea5add318460bdeac15fdf79b2", + "language": "CUDA", + "lines": 145, + "truncated": false, + "block": 1, + "row": 445 + }, + { + "path": "detectron2/layers/csrc/vision.cpp", + "sha256": "b595d3ab87335520bed1f17b0a8fe777f49771b618ac87de799f334e0fdb8beb", + "language": "C++", + "lines": 121, + "truncated": false, + "block": 1, + "row": 229 + }, + { + "path": "detectron2/layers/deform_conv.py", + "sha256": "faf888d259b0e73f5742a0e067d37d0eff8dee28a086cb3f640e0c49704c93dd", + "language": "Python", + "lines": 514, + "truncated": false, + "block": 1, + "row": 9163 + }, + { + "path": "detectron2/layers/losses.py", + "sha256": "6426d06f915f12f0eb5bf4f31f94092b23422d663337a22fc27a8b4ea8630ccb", + "language": "Python", + "lines": 133, + "truncated": false, + "block": 1, + "row": 7210 + }, + { + "path": "detectron2/layers/mask_ops.py", + "sha256": "e654dccf464f61af751f2159a9b49f0084b883def7bb9b7f6b7d347d72160f1f", + "language": "Python", + "lines": 275, + "truncated": false, + "block": 1, + "row": 8612 + }, + { + "path": "detectron2/layers/nms.py", + "sha256": "27c0a8cc9f955572f56dca84065bd760febdbbaf0c2b27514e9cd9f85f829691", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 1, + "row": 7886 + }, + { + "path": "detectron2/layers/roi_align.py", + "sha256": "f6e8ba49495f892c702c3616b2760c16821dca9288e094eedc1cc36da05ffc36", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 1, + "row": 6802 + }, + { + "path": "detectron2/layers/roi_align_rotated.py", + "sha256": "db0b0801cde13049d3053b0d347295104da2d56891956899300c86cdf168e4ed", + "language": "Python", + "lines": 103, + "truncated": false, + "block": 1, + "row": 7078 + }, + { + "path": "detectron2/layers/rotated_boxes.py", + "sha256": "fb2df2674c19b0f0a649035ba98087fc30123970987740e21319f3ffdb709574", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 1, + "row": 5483 + }, + { + "path": "detectron2/layers/shape_spec.py", + "sha256": "5c87061247eefcd691058e2c58f7617ad50018caae4b3e1fbc4242957507ac97", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 1, + "row": 5413 + }, + { + "path": "detectron2/layers/wrappers.py", + "sha256": "b121b24cadd4fbf2e2bf0cebe00a8811bff351141eb2f2d0e456896827cfcd2d", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 1, + "row": 7690 + }, + { + "path": "detectron2/model_zoo/__init__.py", + "sha256": "da9083b1ca832422ad67f361350b1269b9fb531fa0c02d4bb122bcb23c9e9171", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 1, + "row": 5362 + }, + { + "path": "detectron2/model_zoo/model_zoo.py", + "sha256": "1710c8167c12fe960e3ba6ba7eda89ece5a7206c18ee91d7db52000b7ca205eb", + "language": "Python", + "lines": 213, + "truncated": false, + "block": 1, + "row": 8664 + }, + { + "path": "detectron2/modeling/__init__.py", + "sha256": "02765768813269e3a63e1453b4cf604526198373b3b6be00f7065a2116290f3f", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 1, + "row": 6043 + }, + { + "path": "detectron2/modeling/anchor_generator.py", + "sha256": "dd3009cdc5f55e0f7413058a852bcd1643888ae4ce495fd011a1c210f39fca7b", + "language": "Python", + "lines": 390, + "truncated": false, + "block": 1, + "row": 9060 + }, + { + "path": "detectron2/modeling/backbone/__init__.py", + "sha256": "fb4c0155cea4709fe74e80130cb8d8a8f48c5de05bc0228e03c3b28827fd9c08", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 1, + "row": 5447 + }, + { + "path": "detectron2/modeling/backbone/backbone.py", + "sha256": "57ce0711b689394b3050a01b464043673d6587481471e875f3f7a3a436601382", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 1, + "row": 6533 + }, + { + "path": "detectron2/modeling/backbone/build.py", + "sha256": "766f95b8321ce37ad9b8ee660d73f380c6e2b09873d7fdaa41170404bd3bb85f", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 1, + "row": 5723 + }, + { + "path": "detectron2/modeling/backbone/fpn.py", + "sha256": "bbc82882c6c1e4500a193c803f931e77c99ce8e3abba9df5dfb8cf391c7b952b", + "language": "Python", + "lines": 268, + "truncated": false, + "block": 1, + "row": 8546 + }, + { + "path": "detectron2/modeling/backbone/mvit.py", + "sha256": "d9bcaf8330887ab644b89265e8de4f86474c22d5a935c3ff3d1abf4815300be7", + "language": "Python", + "lines": 448, + "truncated": false, + "block": 1, + "row": 9103 + }, + { + "path": "detectron2/modeling/backbone/regnet.py", + "sha256": "57dd93cda671aa60be03e324f750649d947a55e6360ab6d830838a397ce2d33e", + "language": "Python", + "lines": 452, + "truncated": false, + "block": 1, + "row": 9137 + }, + { + "path": "detectron2/modeling/backbone/resnet.py", + "sha256": "999f3471e04f9edce81c586cf58f5bebe3a99447a8f9ddb4d3a5236ead71af7b", + "language": "Python", + "lines": 694, + "truncated": false, + "block": 1, + "row": 9450 + }, + { + "path": "detectron2/modeling/backbone/swin.py", + "sha256": "c87122fc2990c9b87a50cfbbd3bad327542044eb3d379fafc3084a9233257a50", + "language": "Python", + "lines": 695, + "truncated": false, + "block": 1, + "row": 9490 + }, + { + "path": "detectron2/modeling/backbone/utils.py", + "sha256": "3be2ae09fdaced380206beab220dacabe65e729c6ab20e86a6b1177a57e58c3d", + "language": "Python", + "lines": 186, + "truncated": false, + "block": 1, + "row": 7822 + }, + { + "path": "detectron2/modeling/backbone/vit.py", + "sha256": "a5b870af30fb74b66c9e4020429083ab9bbf1d15c1e74f9d701ae6a95ac1bd8d", + "language": "Python", + "lines": 524, + "truncated": false, + "block": 1, + "row": 9297 + }, + { + "path": "detectron2/modeling/box_regression.py", + "sha256": "c3959da96f4ee1bc1ef87e9e3eaf6f181a9ed5ce797b87b8f76322cd21ba5e6b", + "language": "Python", + "lines": 369, + "truncated": false, + "block": 1, + "row": 9026 + }, + { + "path": "detectron2/modeling/matcher.py", + "sha256": "fa49cf75f5df88bb22a4b1559b51bca82fcea2dc4bdc196502edd2a54901d060", + "language": "Python", + "lines": 127, + "truncated": false, + "block": 1, + "row": 7776 + }, + { + "path": "detectron2/modeling/meta_arch/__init__.py", + "sha256": "8d8ecab0e021490eb6696c797e49a6b52c48ee90434a79b5b054ab8428cbddc1", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5397 + }, + { + "path": "detectron2/modeling/meta_arch/build.py", + "sha256": "e87192547a57df07c847164193032cae2b3e9321243f09b5080f7508296d8553", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 1, + "row": 5590 + }, + { + "path": "detectron2/modeling/meta_arch/dense_detector.py", + "sha256": "5b18ed9775c63905e64b398449badcd6dbf50e544a55b0a6663e3f4fef75a828", + "language": "Python", + "lines": 294, + "truncated": false, + "block": 1, + "row": 8744 + }, + { + "path": "detectron2/modeling/meta_arch/fcos.py", + "sha256": "90dd36d0d905175ebbd72bcff9ad3e59a3594500499cac4ccf16d5e37509a786", + "language": "Python", + "lines": 328, + "truncated": false, + "block": 1, + "row": 8875 + }, + { + "path": "detectron2/modeling/meta_arch/panoptic_fpn.py", + "sha256": "361524e7beaa650892dbfacd37fc2f3e28655d922f6aa56be4a9d7915bfb3bb9", + "language": "Python", + "lines": 269, + "truncated": false, + "block": 1, + "row": 8555 + }, + { + "path": "detectron2/modeling/meta_arch/rcnn.py", + "sha256": "9b9b8b178292bb5e5953901ae0a6101a3e52e7b96c9ced9584beb113d2a5460c", + "language": "Python", + "lines": 341, + "truncated": false, + "block": 1, + "row": 8931 + }, + { + "path": "detectron2/modeling/meta_arch/retinanet.py", + "sha256": "fdb2a17e4c08e6a894881d7404ef7679793b5f47edca4ea64ab9448ba0572998", + "language": "Python", + "lines": 439, + "truncated": false, + "block": 1, + "row": 9238 + }, + { + "path": "detectron2/modeling/meta_arch/semantic_seg.py", + "sha256": "85d9d052a5c7ac72353f6628ef467bb37d5a5194235058aa63c9447f91815e7b", + "language": "Python", + "lines": 267, + "truncated": false, + "block": 1, + "row": 8480 + }, + { + "path": "detectron2/modeling/mmdet_wrapper.py", + "sha256": "f5daecf52550e140460fc93ab682283dc0e46b14ad28b9411070fd1a76137bff", + "language": "Python", + "lines": 273, + "truncated": false, + "block": 1, + "row": 8613 + }, + { + "path": "detectron2/modeling/poolers.py", + "sha256": "35767a0d9465c16181ce36e96a53b3f15f23be5ba7d73e50e97d6d8be4204870", + "language": "Python", + "lines": 263, + "truncated": false, + "block": 1, + "row": 8690 + }, + { + "path": "detectron2/modeling/postprocessing.py", + "sha256": "364549a6a53c84366f9047a0e1b8dc77758d04cf543806264b0231c8813ce09a", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 1, + "row": 7153 + }, + { + "path": "detectron2/modeling/proposal_generator/__init__.py", + "sha256": "38a19a7c68900805d5049aeeb63b2bdb070c5a6166eb6ccd4d6e89d2883234df", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 1, + "row": 5169 + }, + { + "path": "detectron2/modeling/proposal_generator/build.py", + "sha256": "b37d7dacf7491fbcab6feaed66cdab5c5b69d1e523c9b98acfb231127acf4563", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 1, + "row": 5610 + }, + { + "path": "detectron2/modeling/proposal_generator/proposal_utils.py", + "sha256": "bce2d079a32630bed889c5763e5d9d0d7d389f24095af97324f4324d550e0535", + "language": "Python", + "lines": 205, + "truncated": false, + "block": 1, + "row": 8182 + }, + { + "path": "detectron2/modeling/proposal_generator/rpn.py", + "sha256": "21437d93fad02ba0eef236c1a297c62af37adcc96183d3bd1c968ae55567ba7c", + "language": "Python", + "lines": 533, + "truncated": false, + "block": 1, + "row": 9457 + }, + { + "path": "detectron2/modeling/proposal_generator/rrpn.py", + "sha256": "93716277a57f4108c9c163777db4c2178ddb50a1ac59da00385a0ad29ef84119", + "language": "Python", + "lines": 209, + "truncated": false, + "block": 1, + "row": 8319 + }, + { + "path": "detectron2/modeling/roi_heads/__init__.py", + "sha256": "7555e44904acd84d0dc2a51f09e718ee655f7e72c639972d4b6cfdeed7848a46", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 1, + "row": 5559 + }, + { + "path": "detectron2/modeling/roi_heads/box_head.py", + "sha256": "596c9fea9b83a09b4029c858577bfb891ca40b4ce20818f7ef036b6f717ccc0b", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 1, + "row": 7161 + }, + { + "path": "detectron2/modeling/roi_heads/cascade_rcnn.py", + "sha256": "525cee67663382d84e85a18d26f924fe6f9cbd2b251a7c538a613ad7de010ebc", + "language": "Python", + "lines": 299, + "truncated": false, + "block": 1, + "row": 8861 + }, + { + "path": "detectron2/modeling/roi_heads/fast_rcnn.py", + "sha256": "ebad560f8adcacea671433ed558dfd80200d3179143fd6c75d1512821fe4d9ff", + "language": "Python", + "lines": 569, + "truncated": false, + "block": 1, + "row": 9494 + }, + { + "path": "detectron2/modeling/roi_heads/keypoint_head.py", + "sha256": "aee75a820576e31c5c5d5039514d0e0c33518c1b4354939dbcba247af386ff1d", + "language": "Python", + "lines": 272, + "truncated": false, + "block": 1, + "row": 8647 + }, + { + "path": "detectron2/modeling/roi_heads/mask_head.py", + "sha256": "4370a06a7fef79ba00780f7e5d0f9854cccf70b26bf8168e36a21be09ac1cf2d", + "language": "Python", + "lines": 298, + "truncated": false, + "block": 1, + "row": 8781 + }, + { + "path": "detectron2/modeling/roi_heads/roi_heads.py", + "sha256": "e72abea05f5039e103b75c092ff82ccad6e826d59e7e2044522a82537dd75c7e", + "language": "Python", + "lines": 877, + "truncated": false, + "block": 1, + "row": 9698 + }, + { + "path": "detectron2/modeling/roi_heads/rotated_fast_rcnn.py", + "sha256": "e0b7ac99e26971c59da5ba099a46a56a3f264e26b8febe6dd95d02e11fef2797", + "language": "Python", + "lines": 271, + "truncated": false, + "block": 1, + "row": 8650 + }, + { + "path": "detectron2/modeling/sampling.py", + "sha256": "e9bfd856748e1fa1f2aaae39bc5b5ed02061ff3e7db5b1be2aa159debd3a24ef", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 1, + "row": 6443 + }, + { + "path": "detectron2/modeling/test_time_augmentation.py", + "sha256": "f9ecb187e821c098f0107a16f4d8eae5cb9c90e5b3033337b4ba2f06791be1a7", + "language": "Python", + "lines": 307, + "truncated": false, + "block": 1, + "row": 8801 + }, + { + "path": "detectron2/projects/__init__.py", + "sha256": "a495b88cde124dcd2da637906e134a982d20946712a2252ee44645151f015da9", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 1, + "row": 5822 + }, + { + "path": "detectron2/solver/__init__.py", + "sha256": "161555d06a580d8be0a6ee1e058f1aae27a9bb8c9f5abab8ac12fbd58c149eac", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 1, + "row": 5249 + }, + { + "path": "detectron2/solver/build.py", + "sha256": "4f4b46dfc19082d14cdfb1a8feab7892eac7c57badf84083c5e6cf23b015f950", + "language": "Python", + "lines": 323, + "truncated": false, + "block": 1, + "row": 8850 + }, + { + "path": "detectron2/solver/lr_scheduler.py", + "sha256": "caedae4269b3d5d2220cf63ce6b7bca9d22e3d06b2d483801f71d84d5e7716c3", + "language": "Python", + "lines": 247, + "truncated": false, + "block": 1, + "row": 8345 + }, + { + "path": "detectron2/structures/__init__.py", + "sha256": "367a3f79828c1796554b9c4a6f061d121dcf26ec78f4a730026179cee650e2fd", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5480 + }, + { + "path": "detectron2/structures/boxes.py", + "sha256": "d597561ee888c4066a22c2a87bd1bab412bce4259acb7771e9a427a3ff1d1e86", + "language": "Python", + "lines": 425, + "truncated": false, + "block": 1, + "row": 8973 + }, + { + "path": "detectron2/structures/image_list.py", + "sha256": "3170c0b284471b6491ec98e2f0a9838de9b1831963fe2d3f2f3fa36e4c420ad0", + "language": "Python", + "lines": 136, + "truncated": false, + "block": 1, + "row": 7663 + }, + { + "path": "detectron2/structures/instances.py", + "sha256": "c25b08e473cbf31d94c6090652147d9955b704ebd4a61c6fa83979a0cef81ca2", + "language": "Python", + "lines": 194, + "truncated": false, + "block": 1, + "row": 7864 + }, + { + "path": "detectron2/structures/keypoints.py", + "sha256": "6d169f4bf4b4b4d12417fb12acadeb4b51164d906113b0142be55884c81016ef", + "language": "Python", + "lines": 235, + "truncated": false, + "block": 1, + "row": 8359 + }, + { + "path": "detectron2/structures/masks.py", + "sha256": "d931361e61ec710ec74abd435214c305d1f652050a012a21db0ec1fbaeb531f4", + "language": "Python", + "lines": 539, + "truncated": false, + "block": 1, + "row": 9316 + }, + { + "path": "detectron2/structures/rotated_boxes.py", + "sha256": "fcd376e7017dbab79f292717512ca2d1a7cf37427700ccfa1916a10aab5e6301", + "language": "Python", + "lines": 505, + "truncated": false, + "block": 1, + "row": 9286 + }, + { + "path": "detectron2/tracking/__init__.py", + "sha256": "05aba6054471e2832d36df5a39c8b990a5eeae6ec630eb8e757e15603d223670", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 1, + "row": 5434 + }, + { + "path": "detectron2/tracking/base_tracker.py", + "sha256": "b56da9baa15ad3b5b1dfd684f1d6674bf3e6c17dcb6c7ee6940860bfacd72c90", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 1, + "row": 6384 + }, + { + "path": "detectron2/tracking/bbox_iou_tracker.py", + "sha256": "ef685c12ae587848895f18a54dac0340a250a8851820520b68a731ea8c022a63", + "language": "Python", + "lines": 276, + "truncated": false, + "block": 1, + "row": 8746 + }, + { + "path": "detectron2/tracking/hungarian_tracker.py", + "sha256": "984289513aac8ab4ade88146039222a4aad75046a4a896c74527ef0891933778", + "language": "Python", + "lines": 171, + "truncated": false, + "block": 1, + "row": 8060 + }, + { + "path": "detectron2/tracking/iou_weighted_hungarian_bbox_iou_tracker.py", + "sha256": "774e96c97f030e9b8c9d7d760e615e70c783781fcaafff2ed7bf61a8e6c72757", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 1, + "row": 7192 + }, + { + "path": "detectron2/tracking/utils.py", + "sha256": "5c746ec931cebb509810a961235dc5e312791a07b2d8c06b05e03cbc7dac6bd2", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 1, + "row": 5770 + }, + { + "path": "detectron2/tracking/vanilla_hungarian_bbox_iou_tracker.py", + "sha256": "d0f9d3ace10312d749aa8781a55485cae52e5fab474634f924a68f32d6e3acf2", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 1, + "row": 7531 + }, + { + "path": "detectron2/utils/__init__.py", + "sha256": "1f45f6a979b53c81ac85894aae6f474f070379b5619abd6ce74204188f97bbf3", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 5017 + }, + { + "path": "detectron2/utils/analysis.py", + "sha256": "edb0696dfd13dbfb181b4044de8a3a2a01f8ee3d0d1b95f4014a4c260ef8ac6d", + "language": "Python", + "lines": 188, + "truncated": false, + "block": 1, + "row": 7709 + }, + { + "path": "detectron2/utils/collect_env.py", + "sha256": "4eb017b27f1b27e0a2cbb76f95a3ccacce94280a42e0eb70bf8683e071f0c771", + "language": "Python", + "lines": 263, + "truncated": false, + "block": 1, + "row": 8323 + }, + { + "path": "detectron2/utils/colormap.py", + "sha256": "7ca0c559a3702d86da035a6e33a4ffca5998f2cc989bf8cc5509c60dc5e10d6b", + "language": "Python", + "lines": 158, + "truncated": false, + "block": 1, + "row": 7165 + }, + { + "path": "detectron2/utils/comm.py", + "sha256": "110ec90e339aecc9ef26c369e0f9b1ab1ab0a0856d6e2c444e369937452d7748", + "language": "Python", + "lines": 238, + "truncated": false, + "block": 1, + "row": 8011 + }, + { + "path": "detectron2/utils/develop.py", + "sha256": "09b69cc8f436e93771c2206a0ecbae5b60f8dab71a2e4f0e97d3aec515ea1be2", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 1, + "row": 6203 + }, + { + "path": "detectron2/utils/env.py", + "sha256": "7f7adfdef3ef2495cc9e1d1e8f44aa6b9c59a6f13f0357ea7cb601ec2f3e2ac3", + "language": "Python", + "lines": 171, + "truncated": false, + "block": 1, + "row": 7624 + }, + { + "path": "detectron2/utils/events.py", + "sha256": "35dac81700080bfbbbd8d578d2581c8c1bdc98cd029981a42ff237c72f31f052", + "language": "Python", + "lines": 557, + "truncated": false, + "block": 1, + "row": 9306 + }, + { + "path": "detectron2/utils/file_io.py", + "sha256": "96f1ed78353c7f5d1da1bbb1bd037e41b9d98d0f4584f866aaf02f803e21d104", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 5854 + }, + { + "path": "detectron2/utils/logger.py", + "sha256": "c8a803ecb7de22acbe96ebfe245435b10e75de669a0583ff3756bb39c37d6d6b", + "language": "Python", + "lines": 261, + "truncated": false, + "block": 1, + "row": 8273 + }, + { + "path": "detectron2/utils/memory.py", + "sha256": "f6d5ecbe9ebc54e976d5bd868b82f645b6af9c8145b2269e26cbc084b83b5d4d", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 1, + "row": 6571 + }, + { + "path": "detectron2/utils/registry.py", + "sha256": "bf850549c0f98340fe8b77eda48edf4901bce79efcb7f1d52394dabb3e84d82a", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 1, + "row": 6218 + }, + { + "path": "detectron2/utils/serialize.py", + "sha256": "c12d49f874a1c9b1af61350cd1a9e27fa19a16593be70a133716178423d178fb", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 1, + "row": 5741 + }, + { + "path": "detectron2/utils/testing.py", + "sha256": "8dcf6cd4b608f3bea00f104e37ff8bb6cbc07459b32fe28a0d34436666a544be", + "language": "Python", + "lines": 464, + "truncated": false, + "block": 1, + "row": 9233 + }, + { + "path": "detectron2/utils/torch_version_utils.py", + "sha256": "45ec323021374c52420ce45d47ab575d27ba8b926b453166876e7a6815bdc51e", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 1, + "row": 5303 + }, + { + "path": "detectron2/utils/tracing.py", + "sha256": "ca481324b511ef62fd066e966f3b871d01f43be71b2793e5206430825360fcbf", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 1, + "row": 6578 + }, + { + "path": "detectron2/utils/video_visualizer.py", + "sha256": "5a12f6b2a1ee7e63bfced3e629980492dc3e330fb1c901518b195bf4c70865aa", + "language": "Python", + "lines": 287, + "truncated": false, + "block": 1, + "row": 8673 + }, + { + "path": "detectron2/utils/visualizer.py", + "sha256": "1dd628efb58102c4d5c08cfdef674c192f9da3b09862ec21fc8dd0d7319006f6", + "language": "Python", + "lines": 1289, + "truncated": false, + "block": 1, + "row": 9785 + }, + { + "path": "dev/linter.sh", + "sha256": "92e712fe4b641448f5b15511ff2a7b29b2daffa4070b2cc4460cba09626e0c0e", + "language": "Shell", + "lines": 42, + "truncated": false, + "block": 1, + "row": 11499 + }, + { + "path": "dev/packaging/build_all_wheels.sh", + "sha256": "9da9f253b3d3915fa388dd58c59aa7eb6d7785b0fb0b229b0fff0f82e355f210", + "language": "Shell", + "lines": 65, + "truncated": false, + "block": 1, + "row": 11627 + }, + { + "path": "dev/packaging/build_wheel.sh", + "sha256": "20ff4336d2795f7bf7e809fbe9cb91cb2f65075c28c00f096bf3a94822b335d9", + "language": "Shell", + "lines": 31, + "truncated": false, + "block": 1, + "row": 11587 + }, + { + "path": "dev/packaging/gen_install_table.py", + "sha256": "b8951b750d243b37cd67a597a459dafc92747e2f6823d8a4ecb80bc210d9fd8d", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 1, + "row": 6288 + }, + { + "path": "dev/packaging/gen_wheel_index.sh", + "sha256": "2648912e6c5f6b9b06dba7aaee97a6cdc963f321d7e91a9420f5f452b94796f9", + "language": "Shell", + "lines": 46, + "truncated": false, + "block": 1, + "row": 11625 + }, + { + "path": "dev/packaging/pkg_helpers.bash", + "sha256": "58d56932a2b1a8c75a24ece7084d0fb7353a7f66dca6bb032de7d2da28f7f1d4", + "language": "Shell", + "lines": 75, + "truncated": false, + "block": 1, + "row": 11682 + }, + { + "path": "dev/parse_results.sh", + "sha256": "a54a21dbed6c56ad0070e609a61c0e96b91bd0e09062d2852cdc028d98050fae", + "language": "Shell", + "lines": 45, + "truncated": false, + "block": 1, + "row": 11672 + }, + { + "path": "dev/run_inference_tests.sh", + "sha256": "52929cebfe8b6cc129bae40f44a71694a817c101f9a7bea4a5ccca5250fe3e37", + "language": "Shell", + "lines": 44, + "truncated": false, + "block": 1, + "row": 11622 + }, + { + "path": "dev/run_instant_tests.sh", + "sha256": "292afbf6c43f8a06eb195785090cd42dcb059275cf8dff50d21af7095267e1fd", + "language": "Shell", + "lines": 27, + "truncated": false, + "block": 1, + "row": 11490 + }, + { + "path": "docs/conf.py", + "sha256": "2adbb4c85d2422e53649d740076653877e14b0882637a168609b1994c04370ed", + "language": "Python", + "lines": 395, + "truncated": false, + "block": 1, + "row": 8884 + }, + { + "path": "projects/DeepLab/deeplab/__init__.py", + "sha256": "b047b89f7cf7fcfa1f4277ee55391741130363d0fe6fc30032977267a6db8bfb", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 1, + "row": 5175 + }, + { + "path": "projects/DeepLab/deeplab/build_solver.py", + "sha256": "4d8e913c6db651bcf83fad63fbb25e4ae62b9abca76aa17b502c766ddfeffc9a", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 1, + "row": 5648 + }, + { + "path": "projects/DeepLab/deeplab/config.py", + "sha256": "3b1124a413c41db3bcc37b9414c1f84719693cb1b4cb2739716b0d433e3f4e5e", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 1, + "row": 5806 + }, + { + "path": "projects/DeepLab/deeplab/loss.py", + "sha256": "df86dbb1b1a42c76542af6a2227e8094846ba403f7b408f0ef36ecd8ed2fa127", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 1, + "row": 6166 + }, + { + "path": "projects/DeepLab/deeplab/lr_scheduler.py", + "sha256": "5d2fa44cd6c848c88d00f548db0cffce89dd21fcd7111f78dba83456243e628b", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 1, + "row": 6461 + }, + { + "path": "projects/DeepLab/deeplab/resnet.py", + "sha256": "245ce36a3a59e77f3a379750f8d5722f7837aae89585dcaea5b7955f6309338e", + "language": "Python", + "lines": 158, + "truncated": false, + "block": 1, + "row": 7653 + }, + { + "path": "projects/DeepLab/deeplab/semantic_seg.py", + "sha256": "7be5ae7eb9b7206c2f7dc6d1201cfc21f75d95f2daa18956cab30a1acb6ca4f1", + "language": "Python", + "lines": 348, + "truncated": false, + "block": 1, + "row": 9006 + }, + { + "path": "projects/DeepLab/train_net.py", + "sha256": "dfef3d94417f9034321c3d1111100e55aacd26a0fb69a9850dd2ce9ec67569df", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 1, + "row": 7302 + }, + { + "path": "projects/DensePose/apply_net.py", + "sha256": "8a41cd6aa1ff6eb7cf61161527a7834ba4a3bb388bc6c28e1e22a55ed6bccd3a", + "language": "Python", + "lines": 353, + "truncated": false, + "block": 1, + "row": 8812 + }, + { + "path": "projects/DensePose/densepose/__init__.py", + "sha256": "814f24fddbc908708873380465e4d6f3ed854f36cd2aacaf30064526c2be04a9", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 1, + "row": 5573 + }, + { + "path": "projects/DensePose/densepose/config.py", + "sha256": "c4d96b911f91c1e97d7149e680bdbb9a7cbc13518ba95227fea03b95ddb70715", + "language": "Python", + "lines": 277, + "truncated": false, + "block": 1, + "row": 8805 + }, + { + "path": "projects/DensePose/densepose/converters/__init__.py", + "sha256": "20c3c3107442d9665c17b0e5c906284992b92af5cc3555799d44d608f73a7a23", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5474 + }, + { + "path": "projects/DensePose/densepose/converters/base.py", + "sha256": "1eb8b16c6c3afea0066cb507b6f785b4b96c9616908ca203bb6f37c410a4bbb5", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 1, + "row": 6984 + }, + { + "path": "projects/DensePose/densepose/converters/builtin.py", + "sha256": "ead2994cad205df94a6fa254a0077039f0b815296069964aded68b6bd653983e", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 1, + "row": 5791 + }, + { + "path": "projects/DensePose/densepose/converters/chart_output_hflip.py", + "sha256": "6b0442876a62115cd2054854169ae0f508fe8f836486474b0dc5bafc77e4fb3d", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 1, + "row": 6685 + }, + { + "path": "projects/DensePose/densepose/converters/chart_output_to_chart_result.py", + "sha256": "4c47bdf0a71ad7ca44b0929f9474e623f7fc18e9f5c96399f7167132ac4d9286", + "language": "Python", + "lines": 193, + "truncated": false, + "block": 1, + "row": 8034 + }, + { + "path": "projects/DensePose/densepose/converters/hflip.py", + "sha256": "37e34a0771ef72d6fcc1a6d84f2a05e7dadc2e0b220cd899ecce691f9a683d8d", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 1, + "row": 5799 + }, + { + "path": "projects/DensePose/densepose/converters/segm_to_mask.py", + "sha256": "ca7a80a813f3a845f89b60fd40382466f8ef6a491aeb77b218fb38eddad8870f", + "language": "Python", + "lines": 154, + "truncated": false, + "block": 1, + "row": 7751 + }, + { + "path": "projects/DensePose/densepose/converters/to_chart_result.py", + "sha256": "7d1c3d1226eb7105b21bc04944a947606556d878315023b82b137e6623a9f5d6", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 1, + "row": 6638 + }, + { + "path": "projects/DensePose/densepose/converters/to_mask.py", + "sha256": "af8d74216e191440cfdea6f9d176b0e269aa8d3ea7955c5cbaf6ddfce870776b", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 1, + "row": 6052 + }, + { + "path": "projects/DensePose/densepose/data/__init__.py", + "sha256": "7e1dc2c31bba70ec281d9aa593110202c281fb29dc6eb783cb8964afdbc3afd3", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 1, + "row": 5609 + }, + { + "path": "projects/DensePose/densepose/data/build.py", + "sha256": "84d7d8ca1a91692de44361dff74c34805dd92b6f0272a16be5913aa2d986507f", + "language": "Python", + "lines": 744, + "truncated": false, + "block": 1, + "row": 9603 + }, + { + "path": "projects/DensePose/densepose/data/combined_loader.py", + "sha256": "36b18a578843fa1c51cd849f670fb4622024aa7f36be75881a6285ba6acb3957", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 1, + "row": 5975 + }, + { + "path": "projects/DensePose/densepose/data/dataset_mapper.py", + "sha256": "1df56a000861640ea2e95c77215380a372b3bd3700a6f99c4409f61f4c2fa2c5", + "language": "Python", + "lines": 171, + "truncated": false, + "block": 1, + "row": 7973 + }, + { + "path": "projects/DensePose/densepose/data/datasets/__init__.py", + "sha256": "32073bdac0723abd1e24579661f0398fa0e403d0301f4c15095450a3822eb721", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 1, + "row": 5166 + }, + { + "path": "projects/DensePose/densepose/data/datasets/builtin.py", + "sha256": "f94f66bde4687bba8ef7e26f64ab80e85f371497f561c65b3f69d4f6276d9b0a", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 1, + "row": 5519 + }, + { + "path": "projects/DensePose/densepose/data/datasets/chimpnsee.py", + "sha256": "f466d1a58bc1a4404c1d8485a733857a3c2730ee46b8ada9e38864ef112c0916", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 1, + "row": 5655 + }, + { + "path": "projects/DensePose/densepose/data/datasets/coco.py", + "sha256": "040553e1c9d496aa43b7ffc612fa617b4d0da964b097bb346057f8c4202906ad", + "language": "Python", + "lines": 436, + "truncated": false, + "block": 1, + "row": 9050 + }, + { + "path": "projects/DensePose/densepose/data/datasets/dataset_type.py", + "sha256": "020f577071fe2bb2f3491b012c0c232f2548fb4cc1c54f5a1d7638fffea97012", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 1, + "row": 5176 + }, + { + "path": "projects/DensePose/densepose/data/datasets/lvis.py", + "sha256": "a91834e6a93964e36334d94c812a7d11eca4dda0c672bf9eb39096018750721d", + "language": "Python", + "lines": 259, + "truncated": false, + "block": 1, + "row": 8391 + }, + { + "path": "projects/DensePose/densepose/data/image_list_dataset.py", + "sha256": "4bc53386026b8fe77b0af511e89277d9699e1729d92a14adb9f294e492d3ba1a", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 1, + "row": 6550 + }, + { + "path": "projects/DensePose/densepose/data/inference_based_loader.py", + "sha256": "96f04a332ba8b7996482de54f340b98e9a5c91654e80be65e719f29aa36d5bdf", + "language": "Python", + "lines": 174, + "truncated": false, + "block": 1, + "row": 7915 + }, + { + "path": "projects/DensePose/densepose/data/meshes/__init__.py", + "sha256": "c612e7ae9b8e7b2d175cb61a76e965883d02b3de1748e35033b624ab8f8a22c1", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 1, + "row": 5151 + }, + { + "path": "projects/DensePose/densepose/data/meshes/builtin.py", + "sha256": "6d400f633d5b2033597eb36434cd8f7397145b468500b6c88b0f38d09b372a95", + "language": "Python", + "lines": 103, + "truncated": false, + "block": 1, + "row": 6922 + }, + { + "path": "projects/DensePose/densepose/data/meshes/catalog.py", + "sha256": "2a91b94ffbc5a11e926e33e21b3765b57b78cc546849dfc47e4cf018ddc55b1e", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 1, + "row": 6386 + }, + { + "path": "projects/DensePose/densepose/data/samplers/__init__.py", + "sha256": "13b44dc433ea051485adb5bd32ec863dba51067a4f35aeb7b7d59eae6fe9ed37", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 1, + "row": 5365 + }, + { + "path": "projects/DensePose/densepose/data/samplers/densepose_base.py", + "sha256": "2c8578c9a9db9b60c8182a462c8933fb698a2f08817b11b88e801a4efc5b6f6d", + "language": "Python", + "lines": 206, + "truncated": false, + "block": 1, + "row": 8208 + }, + { + "path": "projects/DensePose/densepose/data/samplers/densepose_confidence_based.py", + "sha256": "c42b763519463a94f9ef2585b97b4618821804e53b45a389cd655adbb6740e49", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 1, + "row": 7384 + }, + { + "path": "projects/DensePose/densepose/data/samplers/densepose_cse_base.py", + "sha256": "69047ff3d7f673eb8dc45cf3b8493c5624b30db0bb972710f9019eca742f73fa", + "language": "Python", + "lines": 146, + "truncated": false, + "block": 1, + "row": 7610 + }, + { + "path": "projects/DensePose/densepose/data/samplers/densepose_cse_confidence_based.py", + "sha256": "ed9811c9dffc4e79b7e3549124dcb837ef4ee2843195dd1186c21ac9b83a89af", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 1, + "row": 7498 + }, + { + "path": "projects/DensePose/densepose/data/samplers/densepose_cse_uniform.py", + "sha256": "2ecf3cdc74608c017cf3d7fc73496e4df1a91bb3e5a69c73e717f8ab2bc50c0c", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 1, + "row": 5222 + }, + { + "path": "projects/DensePose/densepose/data/samplers/densepose_uniform.py", + "sha256": "2effe12c4bce099c85721e47cdc7703a2ce08b7cca42422376aca6390f6a7f1d", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 1, + "row": 5902 + }, + { + "path": "projects/DensePose/densepose/data/samplers/mask_from_densepose.py", + "sha256": "56d6c34afd305c2ade04e890939a08d0094547f2432dd2969ef88f2b8fd836bb", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 1, + "row": 5685 + }, + { + "path": "projects/DensePose/densepose/data/samplers/prediction_to_gt.py", + "sha256": "fb1975ce17a6e1de9de94a7a0d545f5c280b4c3d5fb95715b2481422e2fd7045", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 1, + "row": 6928 + }, + { + "path": "projects/DensePose/densepose/data/transform/__init__.py", + "sha256": "166d0a9cf48c9f14d5ba691fcf0c8a47eb0a2ecb6260a31ab808e696b1b00b82", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 1, + "row": 5079 + }, + { + "path": "projects/DensePose/densepose/data/transform/image.py", + "sha256": "b48cac5f1f133c272ecf3347ee01186794cfc81c295a9f1f245a6a7bcbd4174f", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 1, + "row": 5968 + }, + { + "path": "projects/DensePose/densepose/data/utils.py", + "sha256": "775b99639c717b1df8daf9d9f728e73bb202b8fd6510d3d0f8188372e468d7d2", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 1, + "row": 5738 + }, + { + "path": "projects/DensePose/densepose/data/video/__init__.py", + "sha256": "5600c3e8478b1021223ec7b0adb8b96dc21db5cf46a6845e94ec1f0ed89c697a", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 1, + "row": 5285 + }, + { + "path": "projects/DensePose/densepose/data/video/frame_selector.py", + "sha256": "2ba224184fc51c30ce0703c7c79417fda2f7a1a662a80ef5501815fbe59c79d0", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 1, + "row": 6351 + }, + { + "path": "projects/DensePose/densepose/data/video/video_keyframe_dataset.py", + "sha256": "7d3cb320bc862d9bd18d43c90d14b75f7b5f6e09c233dd735bba26d45a9341aa", + "language": "Python", + "lines": 305, + "truncated": false, + "block": 1, + "row": 8768 + }, + { + "path": "projects/DensePose/densepose/engine/__init__.py", + "sha256": "5dad0a54e79175254a6bd02f9feb93e203ae14040f1560c0a9f9edcef854cb94", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 1, + "row": 5072 + }, + { + "path": "projects/DensePose/densepose/engine/trainer.py", + "sha256": "331d804fa7056223d72a16d6dc46f87dfddb92c2a62b632b9f58a99238c76999", + "language": "Python", + "lines": 262, + "truncated": false, + "block": 1, + "row": 8591 + }, + { + "path": "projects/DensePose/densepose/evaluation/__init__.py", + "sha256": "db7ed9a45959f5d7912fe795c82ad285607c5fde0cab9e92ea6262554818d10a", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 1, + "row": 5087 + }, + { + "path": "projects/DensePose/densepose/evaluation/d2_evaluator_adapter.py", + "sha256": "2c9b722ee90c4ee0c2a0adc31b8ebaa499931b11710e9d614f44769439d4d026", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 1, + "row": 6245 + }, + { + "path": "projects/DensePose/densepose/evaluation/densepose_coco_evaluation.py", + "sha256": "0350a1cdf081a71380a9cde7518088106239c912880f32ee2966413bb790c534", + "language": "Python", + "lines": 1309, + "truncated": false, + "block": 1, + "row": 9798 + }, + { + "path": "projects/DensePose/densepose/evaluation/evaluator.py", + "sha256": "179158825eb840fefe13b2785ccc6251a222eca30ee4dd60f362706f865234a5", + "language": "Python", + "lines": 430, + "truncated": false, + "block": 1, + "row": 9154 + }, + { + "path": "projects/DensePose/densepose/evaluation/mesh_alignment_evaluator.py", + "sha256": "01ec298737f277547e308e8fc9fb9e38072b3a7630f787e4451bef3af5192d74", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 1, + "row": 6680 + }, + { + "path": "projects/DensePose/densepose/evaluation/tensor_storage.py", + "sha256": "eb313746bda9edbe5de5548045b8b316af5a5425487f39a37ce9cb743ab3c123", + "language": "Python", + "lines": 241, + "truncated": false, + "block": 1, + "row": 8429 + }, + { + "path": "projects/DensePose/densepose/modeling/__init__.py", + "sha256": "1a6c31a09b77b21f84fe165145939bf883be6136fe859f8c18e43e26b5e4e2b8", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 1, + "row": 5356 + }, + { + "path": "projects/DensePose/densepose/modeling/build.py", + "sha256": "7426982a3f2e933fa3b90b47e35f195b382e97ca6daefcfcd6e6f44e18ff11ed", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 1, + "row": 6561 + }, + { + "path": "projects/DensePose/densepose/modeling/confidence.py", + "sha256": "df03e29f621ecb35273479abba3b4abe0129b71538155494c3eb7778cb38bfc1", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 1, + "row": 6394 + }, + { + "path": "projects/DensePose/densepose/modeling/cse/__init__.py", + "sha256": "3a60b898475d77034459379360a1dd1f46511f5d5c83b5894b6181843dc17f03", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 1, + "row": 5171 + }, + { + "path": "projects/DensePose/densepose/modeling/cse/embedder.py", + "sha256": "f48c5e4290ea8aada0ff6ac15d31c97ccd9d714b7e22b85b4aa22a6503ec67e3", + "language": "Python", + "lines": 130, + "truncated": false, + "block": 1, + "row": 7391 + }, + { + "path": "projects/DensePose/densepose/modeling/cse/utils.py", + "sha256": "bc59bbb687f29ee89b8f1878604827ce85f0f734279ee000b75f0dd8c9eae5fc", + "language": "Python", + "lines": 83, + "truncated": false, + "block": 1, + "row": 6911 + }, + { + "path": "projects/DensePose/densepose/modeling/cse/vertex_direct_embedder.py", + "sha256": "a697afc39da5fb1083b7a255282896d7d09c17240eb8b9cfc99a208cb618f338", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 1, + "row": 6246 + }, + { + "path": "projects/DensePose/densepose/modeling/cse/vertex_feature_embedder.py", + "sha256": "4f4ecf8128b3accafbb320e4e81a88293fb7bb43a090429d42f3e8bf752de41e", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 1, + "row": 6616 + }, + { + "path": "projects/DensePose/densepose/modeling/densepose_checkpoint.py", + "sha256": "3c2f1a16433c0022312af92b535decf6f7dbc6420b17685bdbf38c1652e72d52", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 1, + "row": 5890 + }, + { + "path": "projects/DensePose/densepose/modeling/filter.py", + "sha256": "90c5191baeefe36a733d18a5b9a6dc5f9ca968e603042cd2073a0fd3170b3c99", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 1, + "row": 7271 + }, + { + "path": "projects/DensePose/densepose/modeling/hrfpn.py", + "sha256": "f3dd7be07f14215cf42d60c629123205c30bf7fbdecf4f58a9eb2545edc6a6d3", + "language": "Python", + "lines": 185, + "truncated": false, + "block": 1, + "row": 7978 + }, + { + "path": "projects/DensePose/densepose/modeling/hrnet.py", + "sha256": "2054682d236beba443563d77c07edafb1c07d2a552087f78f5d0f75c4cd86a6b", + "language": "Python", + "lines": 477, + "truncated": false, + "block": 1, + "row": 9220 + }, + { + "path": "projects/DensePose/densepose/modeling/inference.py", + "sha256": "3887fdfaac02fce0d73fdb1b3c8a4b0fa4854c80092ac9162160efc184545372", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 1, + "row": 6256 + }, + { + "path": "projects/DensePose/densepose/modeling/losses/__init__.py", + "sha256": "c3bbe2c48a69e6510d42cd444b6b6f431c7139363887a7665fdd60421cda6dba", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5297 + }, + { + "path": "projects/DensePose/densepose/modeling/losses/chart.py", + "sha256": "9919372ccb4d1e6e9985e7cc5628dba58bf253ace93e0ab47715739946a5f1ed", + "language": "Python", + "lines": 293, + "truncated": false, + "block": 1, + "row": 8951 + }, + { + "path": "projects/DensePose/densepose/modeling/losses/chart_with_confidences.py", + "sha256": "6e3e51b796e4319aa5c459a6553e2d98b759c3338bd082ac3376fb7350cae522", + "language": "Python", + "lines": 207, + "truncated": false, + "block": 1, + "row": 8311 + }, + { + "path": "projects/DensePose/densepose/modeling/losses/cse.py", + "sha256": "004072151c911febd1fe925d10c148302fe92c1dea853ceb5ea9274b6bc9cc14", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 1, + "row": 7373 + }, + { + "path": "projects/DensePose/densepose/modeling/losses/cycle_pix2shape.py", + "sha256": "98e57d2c7e57f98aa3c292a00b2e762462e10b072c87c96124a5343fd23769dc", + "language": "Python", + "lines": 156, + "truncated": false, + "block": 1, + "row": 8009 + }, + { + "path": "projects/DensePose/densepose/modeling/losses/cycle_shape2shape.py", + "sha256": "d8b6ba4cd5d45b0f43eae3d9a951207c7ae48f17d36dc78f816a988699ad9e41", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 1, + "row": 7370 + }, + { + "path": "projects/DensePose/densepose/modeling/losses/embed.py", + "sha256": "fc76bf963e7b7ffdd0b7987f4136f2cae0a9035ab73582ae773118fc336f52e4", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 1, + "row": 7672 + }, + { + "path": "projects/DensePose/densepose/modeling/losses/embed_utils.py", + "sha256": "95eb823520ab1dc11721d7691735ac740c691fd20650acdfe7a0af3652aea1af", + "language": "Python", + "lines": 139, + "truncated": false, + "block": 1, + "row": 7558 + }, + { + "path": "projects/DensePose/densepose/modeling/losses/mask.py", + "sha256": "18b103bed6e2bf39d272a4c547f1a978c2ae8ce4478c9f8cf83723076cf12017", + "language": "Python", + "lines": 127, + "truncated": false, + "block": 1, + "row": 7540 + }, + { + "path": "projects/DensePose/densepose/modeling/losses/mask_or_segm.py", + "sha256": "aae7c0a3a055913cf46556b73a978f4249cabf5b984f622f141b4ae352370d44", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 1, + "row": 6747 + }, + { + "path": "projects/DensePose/densepose/modeling/losses/registry.py", + "sha256": "af7e00e1562d7ddd6b646cf62731fd2f65417e9ca67371b2e35e779df03b7c7f", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 1, + "row": 5139 + }, + { + "path": "projects/DensePose/densepose/modeling/losses/segm.py", + "sha256": "e18ecf522d58e9b24eeaec5b19f60923a10c79e899eb5c8303e045a3b9c5dfea", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 1, + "row": 6921 + }, + { + "path": "projects/DensePose/densepose/modeling/losses/soft_embed.py", + "sha256": "5ab5cc657a0bee367fedef583e4f26666eba5eb271d87343615ba3f53c2468bb", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 1, + "row": 7857 + }, + { + "path": "projects/DensePose/densepose/modeling/losses/utils.py", + "sha256": "a98914e2200d689ca6349eccd1ac7e02503303532d81fe08dc2d53cb5bcba390", + "language": "Python", + "lines": 446, + "truncated": false, + "block": 1, + "row": 9236 + }, + { + "path": "projects/DensePose/densepose/modeling/predictors/__init__.py", + "sha256": "3f8eab9dd55e219c9af84247ce8934295fc014737585f5eaac6fbcbe33e226dd", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 1, + "row": 5388 + }, + { + "path": "projects/DensePose/densepose/modeling/predictors/chart.py", + "sha256": "0bad28c8830db1857b1783fdde6adddb027be2159bdfa525df7943565e6810a9", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 1, + "row": 7033 + }, + { + "path": "projects/DensePose/densepose/modeling/predictors/chart_confidence.py", + "sha256": "337cf7d205ef1926fa377fa125083455006798d15777e728977f76d44ba76f0c", + "language": "Python", + "lines": 179, + "truncated": false, + "block": 1, + "row": 8272 + }, + { + "path": "projects/DensePose/densepose/modeling/predictors/chart_with_confidence.py", + "sha256": "815c0d3e894ef91e97e3cc55f7583efdd2d94bf91bb632bba9bb1f204953f0b0", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5357 + }, + { + "path": "projects/DensePose/densepose/modeling/predictors/cse.py", + "sha256": "4cecba73e8d327d1e66bca33e0aee70fdd29fc49e8eecec043e205ae0ce479e9", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 1, + "row": 6619 + }, + { + "path": "projects/DensePose/densepose/modeling/predictors/cse_confidence.py", + "sha256": "ca058eef22cbc1a122356199a8c2aef77a5fc60c1cc6643ff4c3575d6083c4db", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 1, + "row": 7483 + }, + { + "path": "projects/DensePose/densepose/modeling/predictors/cse_with_confidence.py", + "sha256": "eed4d5722f986d6bf29803cbd47c863d2887c567c0186a5d3420954a2fbd0238", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5372 + }, + { + "path": "projects/DensePose/densepose/modeling/predictors/registry.py", + "sha256": "13cdb3df29ece13998e53fae3d7f2feb4f97f7581637260083e251b0f226a447", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 1, + "row": 5143 + }, + { + "path": "projects/DensePose/densepose/modeling/roi_heads/__init__.py", + "sha256": "4eec142a9b379f1c04a1d9c1ac7b754e3f52d47b393647528322f197d95b40ea", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 1, + "row": 5182 + }, + { + "path": "projects/DensePose/densepose/modeling/roi_heads/deeplab.py", + "sha256": "f6581a4c8fadb011169b1fa7953e7e66928c50f5e32fe7e7ca665c644ecd90b8", + "language": "Python", + "lines": 266, + "truncated": false, + "block": 1, + "row": 8298 + }, + { + "path": "projects/DensePose/densepose/modeling/roi_heads/registry.py", + "sha256": "e215b9fb096e14d4c7dbc6e0ff0dfb2bd6cbb5fd51b1e66a9cdccf5b1b3ab86e", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 1, + "row": 5142 + }, + { + "path": "projects/DensePose/densepose/modeling/roi_heads/roi_head.py", + "sha256": "e27d42ed78f01621179a7d563986b7fbdc9e640d3ca127220aa7621c6389fd2e", + "language": "Python", + "lines": 226, + "truncated": false, + "block": 1, + "row": 8403 + }, + { + "path": "projects/DensePose/densepose/modeling/roi_heads/v1convx.py", + "sha256": "c08826b8be2727f35eaa53e1d2eea282c652a4c3068dd829b648573b1ada8798", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 1, + "row": 6327 + }, + { + "path": "projects/DensePose/densepose/modeling/test_time_augmentation.py", + "sha256": "0fe1fdd51439a6748319c8991718ac468f5a7ecef767f6c8420bd571398dfadc", + "language": "Python", + "lines": 209, + "truncated": false, + "block": 1, + "row": 8608 + }, + { + "path": "projects/DensePose/densepose/modeling/utils.py", + "sha256": "a964abd71ea0db293703a12cb937b5c1ab7b67abea6dbf488fb99746efa92ce1", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 1, + "row": 5286 + }, + { + "path": "projects/DensePose/densepose/structures/__init__.py", + "sha256": "9e5afecff47727cf62fecfe297c0160ab02a73d55387e72468ee8f1c8d50f286", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 1, + "row": 5551 + }, + { + "path": "projects/DensePose/densepose/structures/chart.py", + "sha256": "74fdf85e7030af8c6cce417f93512f3cd14194790fb719da8dc5769ddb139bd8", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 1, + "row": 6444 + }, + { + "path": "projects/DensePose/densepose/structures/chart_confidence.py", + "sha256": "31f5b4d63639fe3765a8091fb160df2bc1d72556e9204ae31fe65e2d6ba6f9c5", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 1, + "row": 7064 + }, + { + "path": "projects/DensePose/densepose/structures/chart_result.py", + "sha256": "e4c411140f636eec5099ee74487854030452228103db3269056e0a707ba32468", + "language": "Python", + "lines": 186, + "truncated": false, + "block": 1, + "row": 7951 + }, + { + "path": "projects/DensePose/densepose/structures/cse.py", + "sha256": "25b6db8fe5ddb35806a76cf70969f9edc07d0da1410f93808ea231b09537a8fa", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 1, + "row": 6136 + }, + { + "path": "projects/DensePose/densepose/structures/cse_confidence.py", + "sha256": "f6c1ef3b675b74ebc86c7ac8b6fc1885d5cded25e2746846c3e6e62b40762873", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 1, + "row": 6643 + }, + { + "path": "projects/DensePose/densepose/structures/data_relative.py", + "sha256": "69299f5edee3039477fb2ae6f2cdcb97077f49cd5b1f66e4502c01cc4277d8fd", + "language": "Python", + "lines": 245, + "truncated": false, + "block": 1, + "row": 8573 + }, + { + "path": "projects/DensePose/densepose/structures/list.py", + "sha256": "583773b9d380e46d5320e6fea0945e31f20331b5ba0ab529ffd4780caa506007", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 1, + "row": 6719 + }, + { + "path": "projects/DensePose/densepose/structures/mesh.py", + "sha256": "0b7c9d4a142b97b26909f4e1e61a6e4a7d8ccd0197b18d7a3cd9199cfecbb6ff", + "language": "Python", + "lines": 173, + "truncated": false, + "block": 1, + "row": 7830 + }, + { + "path": "projects/DensePose/densepose/structures/transform_data.py", + "sha256": "3339020bf16b4817e110cad4a34e18bbc2ff45c6c25f9ae87e0c52759a8f6d24", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 1, + "row": 6708 + }, + { + "path": "projects/DensePose/densepose/utils/dbhelper.py", + "sha256": "1c77e74e2e902cbc6424e0946b1b9a73ebb14e7ec64984dd049502f3966ef8d6", + "language": "Python", + "lines": 149, + "truncated": false, + "block": 1, + "row": 7539 + }, + { + "path": "projects/DensePose/densepose/utils/logger.py", + "sha256": "4bd8bd677a23cb4a009d6b7ee78e8c513f67a25405cce80a1760dea0c56bfd7d", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 1, + "row": 5280 + }, + { + "path": "projects/DensePose/densepose/utils/transform.py", + "sha256": "ffebe5e3648b1fd53dae42d2bde3aec5143e97dbad410c8cddcc501614e8c476", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5409 + }, + { + "path": "projects/DensePose/densepose/vis/base.py", + "sha256": "60120fddc6a3ebb762124f2deeeb8e7bbee81c5fe9132292922d3928d533d289", + "language": "Python", + "lines": 193, + "truncated": false, + "block": 1, + "row": 7872 + }, + { + "path": "projects/DensePose/densepose/vis/bounding_box.py", + "sha256": "dee35773777731f2f23aa72b6dd206d1e0d352093a9e347d6d13be7bd68c1547", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 6039 + }, + { + "path": "projects/DensePose/densepose/vis/densepose_data_points.py", + "sha256": "d569628ad1c05be56b1d66cf702db1e145ba2d3a5e4fae02dea513019750e433", + "language": "Python", + "lines": 108, + "truncated": false, + "block": 1, + "row": 7079 + }, + { + "path": "projects/DensePose/densepose/vis/densepose_outputs_iuv.py", + "sha256": "dabcc19d8f30794a1570e7a27451bc358a6efc8cd34ef1b288c4e2d5348b859d", + "language": "Python", + "lines": 103, + "truncated": false, + "block": 1, + "row": 7121 + }, + { + "path": "projects/DensePose/densepose/vis/densepose_outputs_vertex.py", + "sha256": "a5b962ad4daaaa6f399c0c85dae3326886c39190512aff477afb60d9479bc326", + "language": "Python", + "lines": 231, + "truncated": false, + "block": 1, + "row": 8252 + }, + { + "path": "projects/DensePose/densepose/vis/densepose_results.py", + "sha256": "286ac47d519d4aeb745e720853e79aa98882e3bef9a92f0289439c95dae5eb63", + "language": "Python", + "lines": 359, + "truncated": false, + "block": 1, + "row": 8845 + }, + { + "path": "projects/DensePose/densepose/vis/densepose_results_textures.py", + "sha256": "4a0d47682f2c0439eaeda66dbe8f8645550e0435437114b285882111eb6787d9", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 1, + "row": 7068 + }, + { + "path": "projects/DensePose/densepose/vis/extractor.py", + "sha256": "4e644a7324b3a6eb793a4086b90c239292bc849c89a48c394efea2c536fa9a88", + "language": "Python", + "lines": 203, + "truncated": false, + "block": 1, + "row": 7932 + }, + { + "path": "projects/DensePose/dev/run_inference_tests.sh", + "sha256": "6a409442180ebf0433fc83031bace4daa34514d0c43f984cacf6f313dff442c8", + "language": "Shell", + "lines": 33, + "truncated": false, + "block": 1, + "row": 11504 + }, + { + "path": "projects/DensePose/dev/run_instant_tests.sh", + "sha256": "a0a7f16143ff4870b95d8e6fdc1d69ae30b278a944a77cc96773052d4dd0b171", + "language": "Shell", + "lines": 28, + "truncated": false, + "block": 1, + "row": 11497 + }, + { + "path": "projects/DensePose/query_db.py", + "sha256": "f333ea43c3ecafc211c3cea961dab67bfadc8094eea4ef745edb7df368d2d0a0", + "language": "Python", + "lines": 250, + "truncated": false, + "block": 1, + "row": 8248 + }, + { + "path": "projects/DensePose/setup.py", + "sha256": "30fff5245f81b4769211c910afe0fc9506595a97557ec484804a9b344f109864", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 1, + "row": 5859 + }, + { + "path": "projects/DensePose/tests/common.py", + "sha256": "ef8575abdfea3aecb01d98219f02d08f299c79ea43a2b054651661f5bfaf1b53", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 1, + "row": 6955 + }, + { + "path": "projects/DensePose/tests/test_chart_based_annotations_accumulator.py", + "sha256": "8a53e1a858b57bdaac6addedcf93d4c2c973aa440e3d7df618303f0d27daacde", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 1, + "row": 6981 + }, + { + "path": "projects/DensePose/tests/test_combine_data_loader.py", + "sha256": "6894b313f13832cd6b7d91a615297b67bf3d748fa0e6b101325c8253a9a6e08e", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 1, + "row": 6010 + }, + { + "path": "projects/DensePose/tests/test_cse_annotations_accumulator.py", + "sha256": "9da1eb5d339d0b293174ea03bd46a9dbe6a1a08014d11c59da56cb6dcf3fb4a8", + "language": "Python", + "lines": 240, + "truncated": false, + "block": 1, + "row": 8295 + }, + { + "path": "projects/DensePose/tests/test_dataset_loaded_annotations.py", + "sha256": "4caa8368fc359fe2c76345d8138e234a1882ecc1b46b6ff2c79d1291db41181e", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 1, + "row": 6948 + }, + { + "path": "projects/DensePose/tests/test_frame_selector.py", + "sha256": "4be94716b0a203d3fe0679e1a345515a7f8ca7ff2a9658353b9b0f77e9d9102f", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 1, + "row": 6253 + }, + { + "path": "projects/DensePose/tests/test_image_list_dataset.py", + "sha256": "64afff3e7b514867f19e3601f4eb1d4e0d1ca8a3ce5ad533dbfe5e360ef4dd1c", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 1, + "row": 6185 + }, + { + "path": "projects/DensePose/tests/test_image_resize_transform.py", + "sha256": "1ac192fa0dac1ae7c3fdffac9d2f1cac2cf9ecc67a55cee15ff07128820a9f68", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5476 + }, + { + "path": "projects/DensePose/tests/test_model_e2e.py", + "sha256": "7ad8f60ffe525719552bcc446719f948bb75ed39249fb85203bc68ea65a5e696", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 1, + "row": 5795 + }, + { + "path": "projects/DensePose/tests/test_setup.py", + "sha256": "2737125886e0605d7e23901e5cfa9a8e7d34814f11385a4e6e30987893463960", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 1, + "row": 5732 + }, + { + "path": "projects/DensePose/tests/test_structures.py", + "sha256": "a78b3e9b8d4a32319ce56b10375cf6db4b4fd6bc7c250a8887206a393a05b42e", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 1, + "row": 5645 + }, + { + "path": "projects/DensePose/tests/test_tensor_storage.py", + "sha256": "6417eeef90e1d653375c5906ed5518ade1e5a732072a983a71aaac015c5fbc0e", + "language": "Python", + "lines": 256, + "truncated": false, + "block": 1, + "row": 8610 + }, + { + "path": "projects/DensePose/tests/test_video_keyframe_dataset.py", + "sha256": "aae50591e8ca91fff0358a5937943a7577e310c192951276bc1966df1428c1d1", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 1, + "row": 7097 + }, + { + "path": "projects/DensePose/train_net.py", + "sha256": "08571608b3c7e3610384ed298233b82f6726ed4e48dca3d956e31ece2abb5da6", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 1, + "row": 6549 + }, + { + "path": "projects/MViTv2/configs/cascade_mask_rcnn_mvitv2_b_3x.py", + "sha256": "7f079b94a28c66b918a71e06c62980900958cef5449482571d0858e1b49d1c1e", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 1, + "row": 5238 + }, + { + "path": "projects/MViTv2/configs/cascade_mask_rcnn_mvitv2_b_in21k_3x.py", + "sha256": "7cae3a8c1b796918f455f5f5a6e41b8ab8d7cb54ddc539ff77bc251097b34893", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5144 + }, + { + "path": "projects/MViTv2/configs/cascade_mask_rcnn_mvitv2_h_in21k_lsj_3x.py", + "sha256": "c6dae3455c162499066166703c5ec6cd2d816b23e97cf66ff7c834067263eb3a", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 1, + "row": 5386 + }, + { + "path": "projects/MViTv2/configs/cascade_mask_rcnn_mvitv2_l_in21k_lsj_50ep.py", + "sha256": "66a9859873ed3b37ff2c668c379d595b3c20e3ba635db5b8ef87b2eecd4264b7", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 1, + "row": 5701 + }, + { + "path": "projects/MViTv2/configs/cascade_mask_rcnn_mvitv2_s_3x.py", + "sha256": "7eb3ea064805e37df1f41943597e06801d10d94bb19505481598b0151b65d848", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 1, + "row": 5201 + }, + { + "path": "projects/MViTv2/configs/cascade_mask_rcnn_mvitv2_t_3x.py", + "sha256": "4880c7d9926a13416fdd9256baf83ef85385170f60bc952e0a89742305f56b36", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 1, + "row": 6267 + }, + { + "path": "projects/MViTv2/configs/common/coco_loader.py", + "sha256": "89f4010495fa30e074f74fd109be55c4dffca0754b2863b849b2382ec20345bb", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 1, + "row": 6200 + }, + { + "path": "projects/MViTv2/configs/common/coco_loader_lsj.py", + "sha256": "5e5c7701e60313d39c266160fa1245e72ef7644f12f6b6c8175632f01de7b051", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 1, + "row": 5470 + }, + { + "path": "projects/MViTv2/configs/mask_rcnn_mvitv2_t_3x.py", + "sha256": "db0b9c0f1681d757fa30b37a3b5ee8ff3c05c11adc78f75f2bc427f6191eddd2", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 1, + "row": 6131 + }, + { + "path": "projects/Panoptic-DeepLab/panoptic_deeplab/__init__.py", + "sha256": "6fc05344849f50245b71ceb6b520da841d901c700100b214b8b05999911c3d2c", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 1, + "row": 5244 + }, + { + "path": "projects/Panoptic-DeepLab/panoptic_deeplab/config.py", + "sha256": "09ca792589ce16596bf91b2c494c2728da47c9ceb03027ec74445280aebf4cba", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 1, + "row": 6651 + }, + { + "path": "projects/Panoptic-DeepLab/panoptic_deeplab/dataset_mapper.py", + "sha256": "26464e0916f7acbe68592a48ccf6bf772aa20b965c12e2ba8e6fd176a87c3b12", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 1, + "row": 7282 + }, + { + "path": "projects/Panoptic-DeepLab/panoptic_deeplab/panoptic_seg.py", + "sha256": "4d45bc4b3928244de76e24acaf937f097ef0e313dc883b557036fc0e9ac3e5ff", + "language": "Python", + "lines": 572, + "truncated": false, + "block": 1, + "row": 9444 + }, + { + "path": "projects/Panoptic-DeepLab/panoptic_deeplab/post_processing.py", + "sha256": "77e64612fea645ab1beace7b2b2d619631480cce3f40725a3cd624358a4156de", + "language": "Python", + "lines": 234, + "truncated": false, + "block": 1, + "row": 8432 + }, + { + "path": "projects/Panoptic-DeepLab/panoptic_deeplab/target_generator.py", + "sha256": "db688869e1bc73809d1faa3c3412225f9eb2a71ee80eb6f95b700d41ac42e0ed", + "language": "Python", + "lines": 155, + "truncated": false, + "block": 1, + "row": 8093 + }, + { + "path": "projects/Panoptic-DeepLab/train_net.py", + "sha256": "2f1d7df3951dbb3c01322c96d8b3b12e4bf4e091c8ceda59cb265f5fdc7b46ae", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 1, + "row": 7764 + }, + { + "path": "projects/PointRend/point_rend/__init__.py", + "sha256": "1bde2ecd91446bbf45e3de9bdbfbb0193d5a4044c2a491d3567779901a0e9cc3", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 1, + "row": 5217 + }, + { + "path": "projects/PointRend/point_rend/color_augmentation.py", + "sha256": "419e07d2a995c5afd6401e94252120615d1fdcf54ccb6b9031676f4275021a51", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 1, + "row": 6769 + }, + { + "path": "projects/PointRend/point_rend/config.py", + "sha256": "0b6c43c08bfb0e2eeeae7ef9f625cdb190714a70deeac6becf513e9eb173657b", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 1, + "row": 6524 + }, + { + "path": "projects/PointRend/point_rend/mask_head.py", + "sha256": "76cb6b1b2c3f1a713d27b897d8f0e33f7a0ecdc7f9a8afc3e1290a6b895df24c", + "language": "Python", + "lines": 435, + "truncated": false, + "block": 1, + "row": 9301 + }, + { + "path": "projects/PointRend/point_rend/point_features.py", + "sha256": "81f16bc695110dd45575bb64d8b1d84efbed4d13ab1acb44d2b0d00e88f2daae", + "language": "Python", + "lines": 259, + "truncated": false, + "block": 1, + "row": 8718 + }, + { + "path": "projects/PointRend/point_rend/point_head.py", + "sha256": "dba5285de7349da62bd89d87761089a9fd1598ddd7f13c5819f6478cdab1f4d0", + "language": "Python", + "lines": 282, + "truncated": false, + "block": 1, + "row": 8755 + }, + { + "path": "projects/PointRend/point_rend/roi_heads.py", + "sha256": "4ac4db1b3d54fc62d25241d5fa1827d81d7311e252bf4b9312e175d4c0dd007a", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 1, + "row": 6289 + }, + { + "path": "projects/PointRend/point_rend/semantic_seg.py", + "sha256": "25e1cb163304f1bd4f91c0a97f9999dc35d7a99900b11d4e2745d1c8e2e1a0a0", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 1, + "row": 7631 + }, + { + "path": "projects/PointRend/train_net.py", + "sha256": "0892312978d73130b853e3e12e163c9868b06ae7259716e8e4452fa3d1e1a4a2", + "language": "Python", + "lines": 151, + "truncated": false, + "block": 1, + "row": 7417 + }, + { + "path": "projects/PointSup/point_sup/__init__.py", + "sha256": "191d8dedf07650b8e0a0e0f4474d1488d14087f6e1987b3a526c602bfa5f2dba", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 1, + "row": 5233 + }, + { + "path": "projects/PointSup/point_sup/config.py", + "sha256": "4657ba4975b6b91eee3e1dabaee014b419e277952269430192c338479a2c221c", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 1, + "row": 5281 + }, + { + "path": "projects/PointSup/point_sup/dataset_mapper.py", + "sha256": "ebc33e89ebea85277b7de82f3c42aae33a01eb1bf535962569208186d4e27fe6", + "language": "Python", + "lines": 125, + "truncated": false, + "block": 1, + "row": 7382 + }, + { + "path": "projects/PointSup/point_sup/detection_utils.py", + "sha256": "a667fcd60fa4e46c15892f6691d03d2604ca623202961f323ce8cab857a21fe5", + "language": "Python", + "lines": 103, + "truncated": false, + "block": 1, + "row": 7181 + }, + { + "path": "projects/PointSup/point_sup/mask_head.py", + "sha256": "d73a429a0562c269761c4ad74e272256ec3f49d9aa074946e6736ec9f91e6115", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 1, + "row": 6757 + }, + { + "path": "projects/PointSup/point_sup/point_utils.py", + "sha256": "e85428684e94512e52066d904d2aef00ce318521daf30b953c1a3dfa440bcabb", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 1, + "row": 6889 + }, + { + "path": "projects/PointSup/point_sup/register_point_annotations.py", + "sha256": "66c68db42df2235730525d1a2fa57da21b9a62e338d8e3a6e706856b799fbafb", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 1, + "row": 6609 + }, + { + "path": "projects/PointSup/tools/prepare_coco_point_annotations_without_masks.py", + "sha256": "3d588d791a001c02618715e24eb8400599799795ae8c604e02a629c25c83ed61", + "language": "Python", + "lines": 108, + "truncated": false, + "block": 1, + "row": 7128 + }, + { + "path": "projects/PointSup/train_net.py", + "sha256": "43d677ddde9fbb2b22ac944459f4d74711645e7d6c825f4f73df812e0cfadeff", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 1, + "row": 7152 + }, + { + "path": "projects/Rethinking-BatchNorm/configs/mask_rcnn_BNhead.py", + "sha256": "dc567590fcaf0e598c86f487f1c5ecfb0f806d14e9e8742cea58c6632303163c", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 1, + "row": 5505 + }, + { + "path": "projects/Rethinking-BatchNorm/configs/mask_rcnn_BNhead_batch_stats.py", + "sha256": "2c94ec0b01f6ae49c7002ef011496d8744ac7a10b7ecdcabce32fdcfdd728610", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 1, + "row": 5521 + }, + { + "path": "projects/Rethinking-BatchNorm/configs/mask_rcnn_BNhead_shuffle.py", + "sha256": "eacbe2ed8804f87d554217b25d6c5f01858abb6d844bb362e212b4b589f04be0", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 1, + "row": 6434 + }, + { + "path": "projects/Rethinking-BatchNorm/configs/mask_rcnn_SyncBNhead.py", + "sha256": "72db8297f83d8a4c2edb59070898c224fc56cb6e57dd7b126b3433048d4a70af", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5136 + }, + { + "path": "projects/Rethinking-BatchNorm/configs/retinanet_SyncBNhead.py", + "sha256": "853946c8eba45a54c335819690d56e53dfe3baa0f40ef93cb79c225354c9c151", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 1, + "row": 5509 + }, + { + "path": "projects/Rethinking-BatchNorm/configs/retinanet_SyncBNhead_SharedTraining.py", + "sha256": "0c3e181c1865977a13fc4a169e71338ac8b12bf4a0b9274efe4d3bf3ac5afc55", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 1, + "row": 5809 + }, + { + "path": "projects/Rethinking-BatchNorm/retinanet-eval-domain-specific.py", + "sha256": "fc09c8ca9054ac66ce461284b0143f8f1064faecca9d9fac220b7790fbb153e0", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 1, + "row": 5844 + }, + { + "path": "projects/TensorMask/setup.py", + "sha256": "6c0209a5d72c2a6636b5f63477ba00cabbd0fd1e8dd737726237d39040988d9f", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 1, + "row": 6299 + }, + { + "path": "projects/TensorMask/tensormask/__init__.py", + "sha256": "c8cb40e1deeb174ecc5ee24bb3893fe0ba633b06d67618187eb8b3e3ad314125", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5096 + }, + { + "path": "projects/TensorMask/tensormask/arch.py", + "sha256": "2f954257e1797f71e6f9d36a74f347601f7cdf8f6897b6c6bc047e202913965a", + "language": "Python", + "lines": 913, + "truncated": false, + "block": 1, + "row": 9736 + }, + { + "path": "projects/TensorMask/tensormask/config.py", + "sha256": "d7cd375a627e410d8bd82c70611edcf9e2ce7cfb06a92248c7e9947d6effedbd", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 1, + "row": 6109 + }, + { + "path": "projects/TensorMask/tensormask/layers/__init__.py", + "sha256": "7bcc6070cf407ca15d8342bd72bc214171e8ccd96aec6955afc67d52ac171eaf", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 1, + "row": 5141 + }, + { + "path": "projects/TensorMask/tensormask/layers/csrc/SwapAlign2Nat/SwapAlign2Nat.h", + "sha256": "793f0c2acc524e22947158fce60dc50c2bf143269b5ecbb666d934695300643b", + "language": "C/C++", + "lines": 54, + "truncated": false, + "block": 1, + "row": 334 + }, + { + "path": "projects/TensorMask/tensormask/layers/csrc/SwapAlign2Nat/SwapAlign2Nat_cuda.cu", + "sha256": "faa034abf9fe31405d01b4ba635e047bc78b327cc4e5f71e5372717fd499ef1a", + "language": "CUDA", + "lines": 526, + "truncated": false, + "block": 1, + "row": 449 + }, + { + "path": "projects/TensorMask/tensormask/layers/csrc/vision.cpp", + "sha256": "3e06c8a193b5004dd57fa1447c8c40f7c88af4eafcc947ae44291198f9aa7e05", + "language": "C++", + "lines": 19, + "truncated": false, + "block": 1, + "row": 209 + }, + { + "path": "projects/TensorMask/tensormask/layers/swap_align2nat.py", + "sha256": "a7de98688798c888c82b1e878c90f38d59e640a3db44b4387fd3e7183efcbfa7", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 1, + "row": 6323 + }, + { + "path": "projects/TensorMask/tests/__init__.py", + "sha256": "1f45f6a979b53c81ac85894aae6f474f070379b5619abd6ce74204188f97bbf3", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 5017 + }, + { + "path": "projects/TensorMask/tests/test_swap_align2nat.py", + "sha256": "7a685d125549ea0f43c1879f01fe6beca01f0ac111c718076d758dc3dd12078a", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 1, + "row": 5737 + }, + { + "path": "projects/TensorMask/train_net.py", + "sha256": "883f41ed22335038c34ee12d49c41bb4b09e2ce22390dd39ffd32e4d7127c77c", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 1, + "row": 6249 + }, + { + "path": "projects/TridentNet/train_net.py", + "sha256": "e29a8e53b6411e381c2adaba84b52dddd99d9cddef59d4afb8a9e50d70773f15", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 1, + "row": 6187 + }, + { + "path": "projects/TridentNet/tridentnet/__init__.py", + "sha256": "02e42b4cd0036779058f170a6c26f648ddaf5ed0a2ce6102ff871230c1984c57", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 1, + "row": 5227 + }, + { + "path": "projects/TridentNet/tridentnet/config.py", + "sha256": "c823443c832341b3b7d99b314f5c9bf8356189fb33633afa729b07d69f74d427", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 1, + "row": 5643 + }, + { + "path": "projects/TridentNet/tridentnet/trident_backbone.py", + "sha256": "253dcd43ffa9a7cc7b8ffa85236db0e8a721a2f4274726c86dc6fe30f802f6ce", + "language": "Python", + "lines": 220, + "truncated": false, + "block": 1, + "row": 8131 + }, + { + "path": "projects/TridentNet/tridentnet/trident_conv.py", + "sha256": "313038101d737d87997c66b25872cd0d2787bc3aac9650fc4fd19e5554f1f589", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 1, + "row": 7087 + }, + { + "path": "projects/TridentNet/tridentnet/trident_rcnn.py", + "sha256": "ea1c22f5018900c929843918c3e6cde7d7fb2c90511fb0703e26b9106926095a", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 1, + "row": 7252 + }, + { + "path": "projects/TridentNet/tridentnet/trident_rpn.py", + "sha256": "5f388f1b19636c0c63c5d5e5093f76e270a1d5e4a346cd84570dff0cd769d9e3", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 1, + "row": 5803 + }, + { + "path": "projects/ViTDet/configs/COCO/cascade_mask_rcnn_mvitv2_b_in21k_100ep.py", + "sha256": "46c534e1eacbcd045eefe68adbca927cf525a90b1c80bf9e7ec523a43d8c3083", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 1, + "row": 6834 + }, + { + "path": "projects/ViTDet/configs/COCO/cascade_mask_rcnn_mvitv2_h_in21k_36ep.py", + "sha256": "467fdec5ac948edf1cac979b4681f45c92a164c88b1c47e52e56e9b81224bd4f", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 5707 + }, + { + "path": "projects/ViTDet/configs/COCO/cascade_mask_rcnn_mvitv2_l_in21k_50ep.py", + "sha256": "6373079c7e5a0691db4c2d390dd831c4dbaec14930a4a2844dda2be3724ab279", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 1, + "row": 5490 + }, + { + "path": "projects/ViTDet/configs/COCO/cascade_mask_rcnn_swin_b_in21k_50ep.py", + "sha256": "807d8b06891db12f2e331b9b7f04b9a9eb152efb2bc562ce0e30fe42e2f4fe5a", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 1, + "row": 6082 + }, + { + "path": "projects/ViTDet/configs/COCO/cascade_mask_rcnn_swin_l_in21k_50ep.py", + "sha256": "405d1478bc33d299da1022fdd2c85117ccd54d6408a7dba62f94dc7c10c26c8c", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 1, + "row": 5327 + }, + { + "path": "projects/ViTDet/configs/COCO/cascade_mask_rcnn_vitdet_b_100ep.py", + "sha256": "dd11409db5ca9b2d704aa9b1ac67a82b96b77165246c733fc87869981def43b7", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 1, + "row": 5971 + }, + { + "path": "projects/ViTDet/configs/COCO/cascade_mask_rcnn_vitdet_h_75ep.py", + "sha256": "4280c4a11192bac6d424e1a765832baa9c7abd1f966141476958e89255507d4b", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 1, + "row": 5727 + }, + { + "path": "projects/ViTDet/configs/COCO/cascade_mask_rcnn_vitdet_l_100ep.py", + "sha256": "f585a22567cc8e2198e6757497cfddd2217cf868408c44ba46edaf8074335885", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 1, + "row": 5532 + }, + { + "path": "projects/ViTDet/configs/COCO/mask_rcnn_vitdet_b_100ep.py", + "sha256": "c20436daa3e54b00386f0fc30207fabaed3220cf91fd6e07dac8f86e15c05788", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 1, + "row": 5888 + }, + { + "path": "projects/ViTDet/configs/COCO/mask_rcnn_vitdet_h_75ep.py", + "sha256": "f8ae4b5c502278fdbb68c61d870ae191402354a87f38a4814e23d2954f6eaf61", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 1, + "row": 5725 + }, + { + "path": "projects/ViTDet/configs/COCO/mask_rcnn_vitdet_l_100ep.py", + "sha256": "549b33c2108935e5739593bd14d19bc2c5c246bc589a6adab3635482275ef930", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 1, + "row": 5523 + }, + { + "path": "projects/ViTDet/configs/LVIS/cascade_mask_rcnn_mvitv2_b_in21k_100ep.py", + "sha256": "a50bc08a811a98202a2ccadc08eb53e50996d3db739f5303c5a40387a18da2c3", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 1, + "row": 6078 + }, + { + "path": "projects/ViTDet/configs/LVIS/cascade_mask_rcnn_mvitv2_h_in21k_50ep.py", + "sha256": "965065e19fee8f2c37044fa77471e529d54159b186424be9f277a51f213020b3", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 1, + "row": 5571 + }, + { + "path": "projects/ViTDet/configs/LVIS/cascade_mask_rcnn_mvitv2_l_in21k_50ep.py", + "sha256": "c85a07b558a30b193f5dd618487a3b22bae272eaa55ed50d3f108a3ecd3fd7c3", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 1, + "row": 5539 + }, + { + "path": "projects/ViTDet/configs/LVIS/cascade_mask_rcnn_swin_b_in21k_50ep.py", + "sha256": "9f26fb7ac6eaaa554a6a15062a972b8b8b5a48fb5ec3a38127493cb2a3adfe7c", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 1, + "row": 6152 + }, + { + "path": "projects/ViTDet/configs/LVIS/cascade_mask_rcnn_swin_l_in21k_50ep.py", + "sha256": "82f1b3e0d6dfcdccace7afc720b26fec9285fc5435a50db498e55701e30cbe4e", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 1, + "row": 5231 + }, + { + "path": "projects/ViTDet/configs/LVIS/cascade_mask_rcnn_vitdet_b_100ep.py", + "sha256": "22801cb765425a495881c29f500931c70e3addb2f4caec40693874d9b0c3b630", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 1, + "row": 6127 + }, + { + "path": "projects/ViTDet/configs/LVIS/cascade_mask_rcnn_vitdet_h_100ep.py", + "sha256": "617fcd2692399bfb2e45e4ac39bb6610c0389d8f36e8ffcf9734061e1c4bef62", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 1, + "row": 6129 + }, + { + "path": "projects/ViTDet/configs/LVIS/cascade_mask_rcnn_vitdet_l_100ep.py", + "sha256": "f4b65c2a90df52d34f62bb4c871b6134ca84e36fea34013fa344bd58e7898b76", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 1, + "row": 6130 + }, + { + "path": "projects/ViTDet/configs/LVIS/mask_rcnn_vitdet_b_100ep.py", + "sha256": "4e4b9b182580db737ec58e927be6b14ae4a14c1083c922304b6bc2e40afcab37", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 1, + "row": 6005 + }, + { + "path": "projects/ViTDet/configs/LVIS/mask_rcnn_vitdet_h_100ep.py", + "sha256": "23506c91b74c9c50e80e8bccaefa52b7ce777af394f98ae9e283c3c8a3938dc1", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 1, + "row": 5625 + }, + { + "path": "projects/ViTDet/configs/LVIS/mask_rcnn_vitdet_l_100ep.py", + "sha256": "2ec7bde8d1211120ce6aa1da31d95c9af5a265e40de6f6bd9037e9e770b0466c", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 1, + "row": 5545 + }, + { + "path": "projects/ViTDet/configs/common/coco_loader_lsj.py", + "sha256": "40f45b662e26e45f5f969f4fac594f5f1a39b8f1f42a55694cd68428add292b6", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 1, + "row": 5579 + }, + { + "path": "setup.py", + "sha256": "ba12d83fabbe9a324e7ccfeff57c299f1f8908f43d38700e81369dbdd9c6e123", + "language": "Python", + "lines": 219, + "truncated": false, + "block": 1, + "row": 8211 + }, + { + "path": "tests/__init__.py", + "sha256": "1f45f6a979b53c81ac85894aae6f474f070379b5619abd6ce74204188f97bbf3", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 5017 + }, + { + "path": "tests/config/dir1/bad_import.py", + "sha256": "957126b893bc7def80f55eab1f5162b817357ae776e832405952bd65280941a5", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 1, + "row": 5025 + }, + { + "path": "tests/config/dir1/bad_import2.py", + "sha256": "715a7ad4a48ddb4d6bd3bd2bae6596d881e60c4cfa6fe2e13edc1099760ac33c", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4986 + }, + { + "path": "tests/config/dir1/dir1_a.py", + "sha256": "5ac3ca721916ba7bf321021085f94de1135cb351e5eed453b24b98211b9d08fb", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5075 + }, + { + "path": "tests/config/dir1/dir1_b.py", + "sha256": "f4f00a939b26011494e73b845108d8443c7583b685cca700c4b96e6f472951c4", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 1, + "row": 5269 + }, + { + "path": "tests/config/dir1/load_rel.py", + "sha256": "943745ec2e3f2bb12f4d98debd550ac6ce5d5bd68c862e22dd7754fba4a287ec", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 1, + "row": 5114 + }, + { + "path": "tests/config/root_cfg.py", + "sha256": "e5511cdfd6775e8b38dd660393f774637827f6e4242864867052a6dc6b59fb53", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 1, + "row": 5258 + }, + { + "path": "tests/config/test_instantiate_config.py", + "sha256": "57905b094e79deb169cfdb298ada250b8afd112a6c33ca65a454e5dab2c64b3c", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 1, + "row": 7070 + }, + { + "path": "tests/config/test_lazy_config.py", + "sha256": "c04562bdb8c181990770578dcd91a2c4b7cdc195f95edce28033cbe24cea412f", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 1, + "row": 6960 + }, + { + "path": "tests/config/test_yacs_config.py", + "sha256": "b3193a832b8be68cf7bcbe35f9e8525f3d48c6fd2328a7ead7f03c1c42c5dc6c", + "language": "Python", + "lines": 270, + "truncated": false, + "block": 1, + "row": 8255 + }, + { + "path": "tests/data/test_coco.py", + "sha256": "15321c045ef5953e76cef4d6a988a546b1edfb72f586d462b045216092d027ae", + "language": "Python", + "lines": 139, + "truncated": false, + "block": 1, + "row": 7222 + }, + { + "path": "tests/data/test_coco_evaluation.py", + "sha256": "e8e538f185c3b79e0b49d88260c5988f73fd29d4dc96b1ca76695fa85c4b8369", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 1, + "row": 8316 + }, + { + "path": "tests/data/test_dataset.py", + "sha256": "09497486df1702f33f5813409ac44ef37a2e45c18167bfe6a1fd762537305824", + "language": "Python", + "lines": 210, + "truncated": false, + "block": 1, + "row": 8067 + }, + { + "path": "tests/data/test_detection_utils.py", + "sha256": "087493d12fbed3315765a550e5416df9b6b35789e0e28e671c08e6e55feaee55", + "language": "Python", + "lines": 176, + "truncated": false, + "block": 1, + "row": 7952 + }, + { + "path": "tests/data/test_rotation_transform.py", + "sha256": "e792072d98c2b97a0cf0f2099d22f4104afa32e34c731e7a9696bed086f78614", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 1, + "row": 6880 + }, + { + "path": "tests/data/test_sampler.py", + "sha256": "16f213864381c3615c92f0b104f9295ab2133cdaa1941a83e0e117051db0623c", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 1, + "row": 7099 + }, + { + "path": "tests/data/test_transforms.py", + "sha256": "5a3a67f30ee7da1d586d0f0141785dc6f1a4ba3ac12524aa693a860cb5675227", + "language": "Python", + "lines": 268, + "truncated": false, + "block": 1, + "row": 8665 + }, + { + "path": "tests/export/test_c10.py", + "sha256": "ba2bf1264a686bd5ecc320f145bba755e225d3464131fe4584fa3ecc5a70deed", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 1, + "row": 5677 + }, + { + "path": "tests/layers/test_blocks.py", + "sha256": "9ecb009f549dcfb941cb62e51f02be30788533b885cb4664bf09cca937b55006", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 1, + "row": 6179 + }, + { + "path": "tests/layers/test_deformable.py", + "sha256": "37e0251bf24b517e6989671127d20ac320017e0a76d205c64660d81e55ff74aa", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 1, + "row": 8092 + }, + { + "path": "tests/layers/test_losses.py", + "sha256": "3d2cde89dc70e3066ced34396a211e495c44ec46d76add2248f288596c5e810b", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 1, + "row": 6780 + }, + { + "path": "tests/layers/test_mask_ops.py", + "sha256": "44820fe41d4e59439d7469bf5e3c1fb7e92a27134cf8cd83e94045db9b55291f", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 1, + "row": 8017 + }, + { + "path": "tests/layers/test_nms.py", + "sha256": "a6b9fec7ad4a9044199177e96ce836f2cc71613a98a1965a5a078d4528b8dbd6", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 1, + "row": 5820 + }, + { + "path": "tests/layers/test_nms_rotated.py", + "sha256": "03c09a48b3f3db5469aa8cf66d2558050078c5f9725f31887263d61510c4153e", + "language": "Python", + "lines": 172, + "truncated": false, + "block": 1, + "row": 8036 + }, + { + "path": "tests/layers/test_roi_align.py", + "sha256": "45d7b7ea3e66fc2100b387c49f239c5b7a289fdd97658ca0f13fa1f74d942255", + "language": "Python", + "lines": 210, + "truncated": false, + "block": 1, + "row": 8118 + }, + { + "path": "tests/layers/test_roi_align_rotated.py", + "sha256": "7743db55307683f65879a8245995c92fc25c338d4089169f6b1c667190a53a5c", + "language": "Python", + "lines": 176, + "truncated": false, + "block": 1, + "row": 7895 + }, + { + "path": "tests/modeling/test_anchor_generator.py", + "sha256": "6775fc80fbc114f535c43dccc291f445e9c602cf93b08f224591f5a096694c09", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 1, + "row": 7365 + }, + { + "path": "tests/modeling/test_backbone.py", + "sha256": "44c2dc08ec2de5cf9cfab587fb80078d0b5a4ab45d89836d1340fea1a0f05bf4", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 1, + "row": 5825 + }, + { + "path": "tests/modeling/test_box2box_transform.py", + "sha256": "7083c9d2f18b669a00f598859af61cf705a80d0ec353d8214874ebb3cf948a6e", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 1, + "row": 7016 + }, + { + "path": "tests/modeling/test_fast_rcnn.py", + "sha256": "4a3e66e6e8f337db613eebdd4e927d2e984181b89d81df2ac3a43c6500dd063a", + "language": "Python", + "lines": 171, + "truncated": false, + "block": 1, + "row": 7966 + }, + { + "path": "tests/modeling/test_matcher.py", + "sha256": "0d7f902103dd1079a85ab3a1a24b301c30974132762afae6a38dee4193f55ac6", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 1, + "row": 6106 + }, + { + "path": "tests/modeling/test_mmdet.py", + "sha256": "714eb1b42635da02262340260925ad2dc421fa9e3c668918b079a9f383cd3d27", + "language": "Python", + "lines": 186, + "truncated": false, + "block": 1, + "row": 8049 + }, + { + "path": "tests/modeling/test_model_e2e.py", + "sha256": "01ee7d99088c32e9f62fe795f48f725377ea01ef1cf9bf5ddc7a607f70a1a43d", + "language": "Python", + "lines": 227, + "truncated": false, + "block": 1, + "row": 8291 + }, + { + "path": "tests/modeling/test_roi_heads.py", + "sha256": "40a211b3b6143b26b26314786c7dc7d59cdb7563613ee886f7a83d703b92fe47", + "language": "Python", + "lines": 323, + "truncated": false, + "block": 1, + "row": 8936 + }, + { + "path": "tests/modeling/test_roi_pooler.py", + "sha256": "ab489cbd0b673f720688b8e9da2e1ef40a905eef66b5c9c4bb43efb5bf26f6a5", + "language": "Python", + "lines": 165, + "truncated": false, + "block": 1, + "row": 7625 + }, + { + "path": "tests/modeling/test_rpn.py", + "sha256": "929def20f87f875c6232e3168c4cc9ecfe0e832b6691a1fa66a04f138d31ebbf", + "language": "Python", + "lines": 262, + "truncated": false, + "block": 1, + "row": 8667 + }, + { + "path": "tests/structures/test_boxes.py", + "sha256": "8af9c75f1296146414797e6519a11cc52670dc6ea86702e90c3ce0e8290709ae", + "language": "Python", + "lines": 223, + "truncated": false, + "block": 1, + "row": 8244 + }, + { + "path": "tests/structures/test_imagelist.py", + "sha256": "399fbf4a88b19a293e7f39f95b5fc3ad5ecfceb72b8ec01596bb09de7f6d65f2", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 1, + "row": 6739 + }, + { + "path": "tests/structures/test_instances.py", + "sha256": "8de51bac9c441f6941eec6201cfe8235920d7e69419803d0263a5228669b55ba", + "language": "Python", + "lines": 219, + "truncated": false, + "block": 1, + "row": 8257 + }, + { + "path": "tests/structures/test_keypoints.py", + "sha256": "40f8546d0ea19ae9b4061d8a3ea41aadf5827347c38d22b4ecd301f0756e2e26", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 1, + "row": 5458 + }, + { + "path": "tests/structures/test_masks.py", + "sha256": "01abb8dc385d60182507c2743b4baaa6e970beec7fe831c53c3521eab53970a0", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 1, + "row": 6283 + }, + { + "path": "tests/structures/test_rotated_boxes.py", + "sha256": "a3945084dc3b24043e4086a628a61fc790b6a99fcb4104009fb57840fb7d26bf", + "language": "Python", + "lines": 441, + "truncated": false, + "block": 1, + "row": 9262 + }, + { + "path": "tests/test_checkpoint.py", + "sha256": "45d6ae21c50a4720282fe4cb58660d30d76f9ab2182e16e6709ac9f72f1bea7b", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 1, + "row": 7225 + }, + { + "path": "tests/test_engine.py", + "sha256": "2e75f69b561cc7d5bf22a593cfc1ef39913edb0ab79354622f134679db261fcd", + "language": "Python", + "lines": 264, + "truncated": false, + "block": 1, + "row": 8586 + }, + { + "path": "tests/test_events.py", + "sha256": "5fae9baf416cffa5522db30af643fe8c92190fb92de59f3f4f5cdcb879d6b972", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 1, + "row": 7348 + }, + { + "path": "tests/test_export_caffe2.py", + "sha256": "cd05bb4fa151dad622d23f617340774320d4705b8d0eea881647d80a8a21369e", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 1, + "row": 6259 + }, + { + "path": "tests/test_export_onnx.py", + "sha256": "50e3a8fa5148623192e0c88ef71ba2b591723351d11f1b40b420e5d1e3ebae98", + "language": "Python", + "lines": 243, + "truncated": false, + "block": 1, + "row": 8331 + }, + { + "path": "tests/test_export_torchscript.py", + "sha256": "e6b1687ad5ceec0eedbe493975aee919c2b7830bc9e62c5bec439257ec4e6c9b", + "language": "Python", + "lines": 338, + "truncated": false, + "block": 1, + "row": 8901 + }, + { + "path": "tests/test_model_analysis.py", + "sha256": "cde38bab987384d9c308d9aefae1d9235bc9e14306e658dfdf78ace14eac24d9", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 1, + "row": 6702 + }, + { + "path": "tests/test_model_zoo.py", + "sha256": "7342124dcb58180d9081d461da8adeaaaf65fffaf580c144efd5cd674452503c", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 1, + "row": 6102 + }, + { + "path": "tests/test_packaging.py", + "sha256": "97550c5aa1b4e32a250390649102f9404dd38eed793665f6f0668ab8ebe1b90a", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 1, + "row": 5463 + }, + { + "path": "tests/test_registry.py", + "sha256": "59b37559113e3d6b4d0a745b12a3e487e3eee6a3d430edd729ae0bc0a98a4fe7", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 1, + "row": 5857 + }, + { + "path": "tests/test_scheduler.py", + "sha256": "8920e142c43ff48430bbcc74dc2f1b582a58640e123401f2d772020698a20a8f", + "language": "Python", + "lines": 158, + "truncated": false, + "block": 1, + "row": 7451 + }, + { + "path": "tests/test_solver.py", + "sha256": "8eb5af7f7496b5772e902a67ef952f75c1d6e5583154cc0e6d9034e841de910c", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 1, + "row": 6348 + }, + { + "path": "tests/test_visualizer.py", + "sha256": "2ee37019e2711714429e8efe2017c51b142e886265bb7c999810aff407bc0925", + "language": "Python", + "lines": 278, + "truncated": false, + "block": 1, + "row": 8563 + }, + { + "path": "tests/tracking/test_bbox_iou_tracker.py", + "sha256": "cff9fcaa1a846f5786e38d3f2cc0db93c73aa2ad6ba6f865d4833130bcbc3fcf", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 1, + "row": 7907 + }, + { + "path": "tests/tracking/test_hungarian_tracker.py", + "sha256": "63edaf108c4229e4924af882b2704e91bc697643a60889d99228f5d9ce1cc327", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 1, + "row": 7117 + }, + { + "path": "tests/tracking/test_iou_weighted_hungarian_bbox_iou_tracker.py", + "sha256": "6d6540646c5b0bccd1bfd7046277854cd4ffc8350af540209a91ab72a141591a", + "language": "Python", + "lines": 225, + "truncated": false, + "block": 1, + "row": 8570 + }, + { + "path": "tests/tracking/test_vanilla_hungarian_bbox_iou_tracker.py", + "sha256": "66fbfd04948863346a40e4e6cf9becd8740ee205bfe5979960b74ead53cfe89c", + "language": "Python", + "lines": 225, + "truncated": false, + "block": 1, + "row": 8551 + }, + { + "path": "tests/utils/test_tensorboardx.py", + "sha256": "3ba6c0b75be814eb390b7e85f6a1ea1eb4d869819da1315ad4ad1f1ed15d19fa", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 1, + "row": 5503 + }, + { + "path": "tools/analyze_model.py", + "sha256": "13c7600fbf6657bc88c869e948b2ff88744da6db04e170bc0cf9869661b1a4c3", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 1, + "row": 7466 + }, + { + "path": "tools/benchmark.py", + "sha256": "99026527c5987543e3878e0e835719deab344364140acbb71e2ea5f95b103d09", + "language": "Python", + "lines": 210, + "truncated": false, + "block": 1, + "row": 7847 + }, + { + "path": "tools/convert-torchvision-to-d2.py", + "sha256": "aee3aa3559533ab7aeab3470dbc26e1cbb1110dee3c5dd1e86404df893634f41", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 1, + "row": 6069 + }, + { + "path": "tools/deploy/export_model.py", + "sha256": "c8e3f06b378e51361cb88891d1cac21626102a40b862caeac3904ab3591e09e3", + "language": "Python", + "lines": 245, + "truncated": false, + "block": 1, + "row": 8413 + }, + { + "path": "tools/deploy/torchscript_mask_rcnn.cpp", + "sha256": "acf3f391c85247c5e3e1e3f833aea6be4eca8d71120d172ed6f34447ab5da526", + "language": "C++", + "lines": 188, + "truncated": false, + "block": 1, + "row": 256 + }, + { + "path": "tools/lazyconfig_train_net.py", + "sha256": "120aea2ee6b55f628d23e42301472f95dcd0dfa461764f66b856f23bc3e4a09e", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 1, + "row": 7331 + }, + { + "path": "tools/lightning_train_net.py", + "sha256": "ab4b55db4040c5a6d942fbde4a0b5e4f78a967bdb33dd09f74a490a3937e9eef", + "language": "Python", + "lines": 245, + "truncated": false, + "block": 1, + "row": 8328 + }, + { + "path": "tools/plain_train_net.py", + "sha256": "3e2b420ef56ec055a9ce2a6e5e713b0d4c715cb48214dfd8cc00543f30043607", + "language": "Python", + "lines": 221, + "truncated": false, + "block": 1, + "row": 8150 + }, + { + "path": "tools/train_net.py", + "sha256": "1d52917d176f58bdf0c7da8f9d5ccdea6779a4af8014f888f86a0792a12d21a9", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 1, + "row": 7670 + }, + { + "path": "tools/visualize_data.py", + "sha256": "0cdf0cf34fed2dbbce15261074f07a9153231cb793e0afde379030760e833e24", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 1, + "row": 7012 + }, + { + "path": "tools/visualize_json_results.py", + "sha256": "d08f1638b96e39b4649f9bab6b5add6b6687dc5c8e99382705eddb1d19bbc16c", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 1, + "row": 6876 + } + ] +} \ No newline at end of file diff --git a/manifests/2c/github.com__jlhos-fmri__braincovarianceconnecttoolkitv2.1.json b/manifests/2c/github.com__jlhos-fmri__braincovarianceconnecttoolkitv2.1.json new file mode 100644 index 0000000000000000000000000000000000000000..4281b96fc02d7a9334af327cce04bd104aa57504 --- /dev/null +++ b/manifests/2c/github.com__jlhos-fmri__braincovarianceconnecttoolkitv2.1.json @@ -0,0 +1,1713 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/jlhos-fmri/braincovarianceconnecttoolkitv2.1", + "url": "https://github.com/JLhos-fmri/BrainCovarianceConnectToolkitV2.1", + "host": "github.com", + "commit": "d0e9b68f721f766bfa6424b80f488964f4a1869b", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "BCCT.m", + "sha256": "ae528a45ef7dad1c0602bff3a1b7851b8b455ab1a0520ecbc6d8ee0ca3392bea", + "language": "MATLAB", + "lines": 266, + "truncated": false, + "block": 1, + "row": 3932 + }, + { + "path": "BCCT_CaSCN/BCCT_CaSCN_GUI.m", + "sha256": "d4574629af5727685afdff9cdf2f269f3a162dfc2c3cd85cd694af87c8424d5a", + "language": "MATLAB", + "lines": 56, + "truncated": false, + "block": 1, + "row": 3042 + }, + { + "path": "BCCT_CaSCN/BCCT_CaSCN_MAP_GUI.m", + "sha256": "11e758feb5343e781d869c77b716dff12b1b3e4db07749c556342e15f2816d22", + "language": "MATLAB", + "lines": 552, + "truncated": false, + "block": 1, + "row": 4205 + }, + { + "path": "BCCT_CaSCN/BCCT_CaSCN_Mat_GUI.m", + "sha256": "08f0da3ab08cf61ec2b12fa151f2adff43e0af1c2dd6e632672348929d00d9fd", + "language": "MATLAB", + "lines": 499, + "truncated": false, + "block": 1, + "row": 4175 + }, + { + "path": "BCCT_CaSCN/BCCT_CaSCN_SurfROI_GUI.m", + "sha256": "402d440be10d4046118971e7bb68b35c6dbdae53b4b516cf0ed0a44f0d64a9dc", + "language": "MATLAB", + "lines": 4, + "truncated": false, + "block": 1, + "row": 2263 + }, + { + "path": "BCCT_CaSCN/BCCT_CaSCN_Surf_GUI.m", + "sha256": "e972fa3e8b6faaa93b1024f41cf8cab8df01015a46bba9a30a3ad8b35c687880", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 1, + "row": 2851 + }, + { + "path": "BCCT_CaSCN/BCCT_CaSCN_Surf_GUI_freesurfer.m", + "sha256": "c3a618162713f773d64dafe55d09c5393b7f876e56584b2f3662a932fa0ba493", + "language": "MATLAB", + "lines": 615, + "truncated": false, + "block": 1, + "row": 4240 + }, + { + "path": "BCCT_CaSCN/BCCT_CaSCN_Surf_compute_freesurfer.m", + "sha256": "d4c8b0f2c9d5aec4b850284895669b48364d07822d34c85ea1ed0c9b2650f478", + "language": "MATLAB", + "lines": 546, + "truncated": false, + "block": 1, + "row": 4289 + }, + { + "path": "BCCT_CaSCN/BCCT_CaSCN_computemain.m", + "sha256": "7b8423bb707f1cb3dc8e1a3516bac800e10e8d9191670677feec0b01804e548e", + "language": "MATLAB", + "lines": 394, + "truncated": false, + "block": 1, + "row": 4218 + }, + { + "path": "BCCT_CaSCN/BCCT_CaSCN_matrixcomputemain.m", + "sha256": "fc9a2828429a857ed3d1359fa639acdf3290376ce9d426e8947edd86e1be0176", + "language": "MATLAB", + "lines": 182, + "truncated": false, + "block": 1, + "row": 3858 + }, + { + "path": "BCCT_CaSCN/BCCT_Perm_CaSCNMap_Cal.m", + "sha256": "79f1e7ba27c392c3e60582acb3176432d8a16d98cb5f28a6c1c1dd079b2bd485", + "language": "MATLAB", + "lines": 110, + "truncated": false, + "block": 1, + "row": 3637 + }, + { + "path": "BCCT_CaSCN/gca_coef_new.m", + "sha256": "15bc169f1a47b98b2e91bdc1a404c3d71aa778af470a85b5ee9af4dea0183835", + "language": "MATLAB", + "lines": 86, + "truncated": false, + "block": 1, + "row": 3317 + }, + { + "path": "BCCT_CaSCN/gca_coef_sub.m", + "sha256": "c2d02a0ce2119920d47f248946ccf3056dc47a455f9e28bb2ba82115ccd1edfd", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 1, + "row": 3062 + }, + { + "path": "BCCT_CaSCN/restgca_coefficient_XQ.m", + "sha256": "80f31e57c858bdc3a4883f72cbe075ff3d726bfd78e699f77abcc0bb3d77d839", + "language": "MATLAB", + "lines": 84, + "truncated": false, + "block": 1, + "row": 3436 + }, + { + "path": "BCCT_CaSCN/restgca_residual.m", + "sha256": "81a30fa7894dbcc151f5bcb2be3e9f923335e055fe6e5c9d298365afd62f4e14", + "language": "MATLAB", + "lines": 70, + "truncated": false, + "block": 1, + "row": 3300 + }, + { + "path": "BCCT_CaSCN/wgr_inv_pwGC_F.m", + "sha256": "54d508857a93a5d379811dafe18e8638e8fc018a0565acbc011fa78dcb3af26a", + "language": "MATLAB", + "lines": 4, + "truncated": false, + "block": 1, + "row": 2300 + }, + { + "path": "BCCT_CaSCN/wgr_pwGC_F.m", + "sha256": "7fa5ef089d66b9c743b92392c603c4f033ab4ee7639ce2cc22582d1782997e19", + "language": "MATLAB", + "lines": 9, + "truncated": false, + "block": 1, + "row": 2368 + }, + { + "path": "BCCT_Modulate/BCCT_MOD_MAP_GUI.m", + "sha256": "64ed68f8a24d5138a6489288b2938ef5f65eade23029e8780a023f30705d3f77", + "language": "MATLAB", + "lines": 499, + "truncated": false, + "block": 1, + "row": 4182 + }, + { + "path": "BCCT_Modulate/BCCT_MOD_Mat_GUI.m", + "sha256": "43322bdd5a65abb0bdd43805a47de684eb5510e8f335e4edb03ad7036b24e2f5", + "language": "MATLAB", + "lines": 465, + "truncated": false, + "block": 1, + "row": 4149 + }, + { + "path": "BCCT_Modulate/BCCT_MOD_SurfROI_GUI.m", + "sha256": "d2eb5ea3740a70c04c8d8d51f70787beb2d3932d068b0852f574e73924003ec0", + "language": "MATLAB", + "lines": 4, + "truncated": false, + "block": 1, + "row": 2268 + }, + { + "path": "BCCT_Modulate/BCCT_MOD_Surf_GUI.m", + "sha256": "5f388e1218a24f48690b3fd953bb19447c4dca5f59e3dfccf91e48c6bde49fb1", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 1, + "row": 2843 + }, + { + "path": "BCCT_Modulate/BCCT_MOD_Surf_GUI_freesurfer.m", + "sha256": "6e694edd52990309702b0644243c682b4742053ddcb990aafb6efdaf28b39fec", + "language": "MATLAB", + "lines": 564, + "truncated": false, + "block": 1, + "row": 4226 + }, + { + "path": "BCCT_Modulate/BCCT_MOD_Surf_compute_freesurfer.m", + "sha256": "abe4595c07f7f7793aec6215663a2d9a358da0237b248e19f1596a06e02aff65", + "language": "MATLAB", + "lines": 243, + "truncated": false, + "block": 1, + "row": 4008 + }, + { + "path": "BCCT_Modulate/BCCT_Mod_mapcomputemain.m", + "sha256": "14b1e19a976328c81fa1fa2f5676ff29c87d358fc9b9316a2168d124ff8a931d", + "language": "MATLAB", + "lines": 226, + "truncated": false, + "block": 1, + "row": 3908 + }, + { + "path": "BCCT_Modulate/BCCT_Mod_matrixcomputemain.m", + "sha256": "4bc05217fb089916e89af0c0a6b7ccd83dceafbb8d4e5349d38e73f3a2059773", + "language": "MATLAB", + "lines": 153, + "truncated": false, + "block": 1, + "row": 3701 + }, + { + "path": "BCCT_Modulate/BCCT_Modulate_GUI.m", + "sha256": "1d2cec5115dc2ee51f563b3e4f7bbb587a07f83cd79d7e04665432c19196d46a", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 1, + "row": 3015 + }, + { + "path": "BCCT_SCN/BCCT_CON_MAP_GUI.m", + "sha256": "776d5d6f67935f657af348dad9a98f667724e0c3cff090cdbe5cd69de546204b", + "language": "MATLAB", + "lines": 466, + "truncated": false, + "block": 1, + "row": 4161 + }, + { + "path": "BCCT_SCN/BCCT_CON_Mat_GUI.m", + "sha256": "c4a971eb35da62917b779fef22a290b7e06e970d89ae2dc94b715243789e343b", + "language": "MATLAB", + "lines": 427, + "truncated": false, + "block": 1, + "row": 4131 + }, + { + "path": "BCCT_SCN/BCCT_CON_SurfROI_GUI.m", + "sha256": "570259f18cd9b1ec615b1a1dfe01ce37804f6c0be1036f17d6c08ee1d2467c64", + "language": "MATLAB", + "lines": 4, + "truncated": false, + "block": 1, + "row": 2262 + }, + { + "path": "BCCT_SCN/BCCT_CON_Surf_GUI.m", + "sha256": "4582179e4263615bb41dac27d100a8fa8c7992f43d3ee896661460e6382b1fa1", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 1, + "row": 2827 + }, + { + "path": "BCCT_SCN/BCCT_CON_Surf_GUI_freesurfer.m", + "sha256": "87e3ea155e2ca54077055d2e8511ae83d9f699491b22e4145e287ce73e99ac26", + "language": "MATLAB", + "lines": 534, + "truncated": false, + "block": 1, + "row": 4209 + }, + { + "path": "BCCT_SCN/BCCT_CON_Surf_compute_freesurfer.m", + "sha256": "925689a1ee0825f629638c2099243ac71803f5209348dfeb2ec4c04220e45f9e", + "language": "MATLAB", + "lines": 228, + "truncated": false, + "block": 1, + "row": 3997 + }, + { + "path": "BCCT_SCN/BCCT_CON_computemain.m", + "sha256": "47ef4ece427e102d26709737af013204ad6907af17d2784b079d9ed3590bdbd2", + "language": "MATLAB", + "lines": 245, + "truncated": false, + "block": 1, + "row": 3995 + }, + { + "path": "BCCT_SCN/BCCT_CON_matrixcomputemain.m", + "sha256": "21a6d61304408e2d375d8b8abe75022a5d4dad83184d8b3bef03d256febcd199", + "language": "MATLAB", + "lines": 198, + "truncated": false, + "block": 1, + "row": 3869 + }, + { + "path": "BCCT_SCN/BCCT_SCN_GUI.m", + "sha256": "1e1d3a5daafeeefc26a096e48a4e24ee20fb87d0b6ab4966d3b32f9bcc97a010", + "language": "MATLAB", + "lines": 56, + "truncated": false, + "block": 1, + "row": 3011 + }, + { + "path": "BCCT_ShowRes/AFNICOLORMAP.m", + "sha256": "7e48af1f6a3d8324ce02b38838fabc2025bda4f9b1ab3e178cdd1805ac7d1a6f", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 1, + "row": 2896 + }, + { + "path": "BCCT_ShowRes/AS_MatrixFCshow.m", + "sha256": "57b053983defea0497cfa6d4ba6fe4206d78e7cfeb5af9697c1b1c2f9a9b6a2a", + "language": "MATLAB", + "lines": 224, + "truncated": false, + "block": 1, + "row": 3988 + }, + { + "path": "BCCT_ShowRes/AS_MatrixFCshow_bat.m", + "sha256": "ae491924b5ca76a2c922f198f2eb43b66f42a3860546a3255bb80ee05e436d57", + "language": "MATLAB", + "lines": 223, + "truncated": false, + "block": 1, + "row": 3986 + }, + { + "path": "BCCT_ShowRes/AS_MatrixFCshow_bat2.m", + "sha256": "1247ece23384a098e93d270ea173db37c7b6331bc7a730604eba81ef61cf01e0", + "language": "MATLAB", + "lines": 223, + "truncated": false, + "block": 1, + "row": 3990 + }, + { + "path": "BCCT_ShowRes/AS_MatrixFCshow_bat_GUI.m", + "sha256": "3f180f1d9c52d9d7c0ea7e9d835e3e75ec64ab4717494a4f41dd9cc7930100f0", + "language": "MATLAB", + "lines": 342, + "truncated": false, + "block": 1, + "row": 4136 + }, + { + "path": "BCCT_ShowRes/AS_MatrixFCshow_other_GUI.m", + "sha256": "fc14dac6e4e48ed3e1ac87fddd0307d320c8b16aa4c1de0fbe9cfa1abad8ef29", + "language": "MATLAB", + "lines": 346, + "truncated": false, + "block": 1, + "row": 4138 + }, + { + "path": "BCCT_ShowRes/AS_MatrixShowFinalResPerm.m", + "sha256": "b3db0b26ee491b9fb9a50abc5a3e740a77b582224a9f7c781f9cc331784134ae", + "language": "MATLAB", + "lines": 504, + "truncated": false, + "block": 1, + "row": 4242 + }, + { + "path": "BCCT_ShowRes/AS_MatrixShowFinalResPermVer.m", + "sha256": "eec7e8fe6bc8b060b8b09ff6d8a54d8abec12626e7b2245add637606b5c355bf", + "language": "MATLAB", + "lines": 440, + "truncated": false, + "block": 1, + "row": 4214 + }, + { + "path": "BCCT_ShowRes/AS_MatrixShowFinalResPermVer_bat.m", + "sha256": "dcf4cf549c0332ea700e4b01b2f49b147be624acd95419ca1aa603380f55a23b", + "language": "MATLAB", + "lines": 440, + "truncated": false, + "block": 1, + "row": 4215 + }, + { + "path": "BCCT_ShowRes/AS_MatrixShowFinalResPermVer_bat_GUI.m", + "sha256": "94a7a8b782aadce35a7b82485f14b4d16dab80ab1c1b2b62c02c96179f7e0f0e", + "language": "MATLAB", + "lines": 577, + "truncated": false, + "block": 1, + "row": 4263 + }, + { + "path": "BCCT_ShowRes/AS_MatrixShowFinalResPermVer_other_GUI.m", + "sha256": "28198911c796b3407115cd3e7a10da796bba9eef6d1000e26ce1f464db5f1df4", + "language": "MATLAB", + "lines": 574, + "truncated": false, + "block": 1, + "row": 4266 + }, + { + "path": "BCCT_ShowRes/AS_ShowFCmatrixGUI.m", + "sha256": "17536c21d689e7b310dfae142f09d8d4a2d7fad6e444d8287f7baf1f5bd54318", + "language": "MATLAB", + "lines": 370, + "truncated": false, + "block": 1, + "row": 4168 + }, + { + "path": "BCCT_ShowRes/AS_ShowGCGUI.m", + "sha256": "5b9ec893bc794c31688f612dfdf9ed23fc378efd898d78eb80f48c1b20648685", + "language": "MATLAB", + "lines": 1771, + "truncated": false, + "block": 1, + "row": 4347 + }, + { + "path": "BCCT_ShowRes/AS_ShowGCGUI_coef.m", + "sha256": "c84366aa15ab26b2f7942e964978cc7631307176e9ef2ad7931fb08d2c3e395c", + "language": "MATLAB", + "lines": 1883, + "truncated": false, + "block": 1, + "row": 4349 + }, + { + "path": "BCCT_ShowRes/AS_ShowGCGUI_res.m", + "sha256": "61880d65135ed08f36185dba5a03cebef1b28afacc28a66e86fe69864f62a393", + "language": "MATLAB", + "lines": 1771, + "truncated": false, + "block": 1, + "row": 4348 + }, + { + "path": "BCCT_ShowRes/AS_ShowGCmatrixGUI.m", + "sha256": "215b07a3f59611646aa240ee614cc76b4596faf0dd31c9fe887f4dd2fc925ca6", + "language": "MATLAB", + "lines": 117, + "truncated": false, + "block": 1, + "row": 3441 + }, + { + "path": "BCCT_ShowRes/AS_ShowGCmatrix_coefficient.m", + "sha256": "0955aee34b4d101de4afec9dadfe280ad9739ae00f2d3eb2de2ca55bcd40cbad", + "language": "MATLAB", + "lines": 380, + "truncated": false, + "block": 1, + "row": 4132 + }, + { + "path": "BCCT_ShowRes/AS_ShowGCmatrix_residual.m", + "sha256": "e1708aa8f0ad39d579c2b9889429bbc13f67bccf24f298f4727e7b5e52d3e5fe", + "language": "MATLAB", + "lines": 373, + "truncated": false, + "block": 1, + "row": 4126 + }, + { + "path": "BCCT_ShowRes/AS_WTA_MapShow.m", + "sha256": "9ed30bcfdae057a2c4c6f3fbf98886ccc78da062bda6a34ce5d36be12f49bc3d", + "language": "MATLAB", + "lines": 263, + "truncated": false, + "block": 1, + "row": 4059 + }, + { + "path": "BCCT_ShowRes/AS_WTA_MapShow_inFun.m", + "sha256": "f5b76dc69abcd339941bf54bb2ec4cad50b016a56d73fe179a9ed0b5d1144efa", + "language": "MATLAB", + "lines": 268, + "truncated": false, + "block": 1, + "row": 4069 + }, + { + "path": "BCCT_ShowRes/AS_WTA_MapShow_inFunX.m", + "sha256": "c870e19a57ef12452ed4200af275c13a53010a18017e00090de5e5e10e8e7eeb", + "language": "MATLAB", + "lines": 268, + "truncated": false, + "block": 1, + "row": 4081 + }, + { + "path": "BCCT_ShowRes/AS_WTA_MapShow_inFunY.m", + "sha256": "a77bde8289e2c1f325f3dd72e5b11759840bcab859d7a685938df5c35ae118d1", + "language": "MATLAB", + "lines": 268, + "truncated": false, + "block": 1, + "row": 4082 + }, + { + "path": "BCCT_ShowRes/AS_WTA_MapShow_inFunZ.m", + "sha256": "10dd978e9e6e4149219cea43ed48ce8134663b320268fcee6b1fbb18f869c297", + "language": "MATLAB", + "lines": 268, + "truncated": false, + "block": 1, + "row": 4084 + }, + { + "path": "BCCT_ShowRes/AS_WTA_MapShow_inFunZspec.m", + "sha256": "1e51886749cd92a763bb33d470d35d50ad6f5be935ff5c3f8db7511771b8ffa4", + "language": "MATLAB", + "lines": 268, + "truncated": false, + "block": 1, + "row": 4079 + }, + { + "path": "BCCT_ShowRes/BCCT_MatrixGCshow_coef_GUI.m", + "sha256": "8ce2c39f5435064921888be31c3ef7fbe8831b1259307a9c0180dde16ce92820", + "language": "MATLAB", + "lines": 156, + "truncated": false, + "block": 1, + "row": 3709 + }, + { + "path": "BCCT_ShowRes/BCCT_MatrixGCshow_res_GUI.m", + "sha256": "cb6a37bd1e6449ee224d94ac1eb64fdfb4dc9d35e1be243e2bb825d3bcd97cd4", + "language": "MATLAB", + "lines": 205, + "truncated": false, + "block": 1, + "row": 3813 + }, + { + "path": "BCCT_ShowRes/BCCT_MatrixShowFinalResPermVer_other_GUI.m", + "sha256": "da2d42991f413b7e3de678f407814ce6763019042378b7025523b51e01a9851d", + "language": "MATLAB", + "lines": 104, + "truncated": false, + "block": 1, + "row": 3394 + }, + { + "path": "BCCT_ShowRes/BCCT_ShowFCmatrixGUI.m", + "sha256": "8ede958c8afb3a35fb7d71219e912c3c49dbbe6b48b99f678fde1ef6c1cd8895", + "language": "MATLAB", + "lines": 373, + "truncated": false, + "block": 1, + "row": 4160 + }, + { + "path": "BCCT_ShowRes/BCCT_ShowFCmatrixGUI_GCA.m", + "sha256": "a10512d91c149b69903bc9ba9efafdfb13ddd8f1b38aeeac578f23089d18e08d", + "language": "MATLAB", + "lines": 225, + "truncated": false, + "block": 1, + "row": 4007 + }, + { + "path": "BCCT_ShowRes/BCCT_ShowGCMap_GUI_coef.m", + "sha256": "b6673b367de074bdb3f24d667890c5bbb7ec58c4781db744e870ee42ed6d3da9", + "language": "MATLAB", + "lines": 327, + "truncated": false, + "block": 1, + "row": 4037 + }, + { + "path": "BCCT_ShowRes/BCCT_ShowGCMap_GUI_res.m", + "sha256": "8b188c9e639610b35f866e7b2f0a74f6b0336f72f21ddaa321ec5480a788a9a4", + "language": "MATLAB", + "lines": 335, + "truncated": false, + "block": 1, + "row": 4039 + }, + { + "path": "BCCT_ShowRes/BCCT_ShowGCmatrix_GUI.m", + "sha256": "6d2c8be8166618c47d9b3886a8d1ede4d9c78b24a58c629afa882c0f84302dc4", + "language": "MATLAB", + "lines": 276, + "truncated": false, + "block": 1, + "row": 4108 + }, + { + "path": "BCCT_ShowRes/BCCT_ShowMap_GUI.m", + "sha256": "18319abbcd3568537a680e414896bb7010fc6726f5ead9b6a6e96801f27167ca", + "language": "MATLAB", + "lines": 573, + "truncated": false, + "block": 1, + "row": 4213 + }, + { + "path": "BCCT_ShowRes/BCCT_ShowWTAGUI.m", + "sha256": "d49246d7c72f7538fc4fc492836ed10542e48a7fc27e333a4147d70c051d7e58", + "language": "MATLAB", + "lines": 1717, + "truncated": false, + "block": 1, + "row": 4346 + }, + { + "path": "BCCT_ShowRes/BCCT_VIEW_surfsimp.m", + "sha256": "7e8ccb5274e0670c3beb7094c36b182de739a88847c358a67376570cf5d15296", + "language": "MATLAB", + "lines": 195, + "truncated": false, + "block": 1, + "row": 3955 + }, + { + "path": "BCCT_ShowRes/BCCT_VIEWmain.m", + "sha256": "0165ffbc1e30266f2fa570422d02b0fec2288271b08cbf58b492132ba773ea3a", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 1, + "row": 3167 + }, + { + "path": "BCCT_ShowRes/BCCT_showgcmap_subfun.m", + "sha256": "055230d1384c254ddb2897462d3b177ebf903159e675c28e10b6a137bc561e51", + "language": "MATLAB", + "lines": 575, + "truncated": false, + "block": 1, + "row": 4216 + }, + { + "path": "BCCT_ShowRes/BCCT_showgcmap_subfun2.m", + "sha256": "cb3e1cb8bcbed996e91e9b47affb8acc097127dd0494b5c01b16c06e38de6a82", + "language": "MATLAB", + "lines": 577, + "truncated": false, + "block": 1, + "row": 4217 + }, + { + "path": "BCCT_ShowRes/BCCT_showmap_subfun1.m", + "sha256": "2ddeba80cfa60f906de1922768dc6dfb4d508cc129e7e8424e4fb709150fbf75", + "language": "MATLAB", + "lines": 556, + "truncated": false, + "block": 1, + "row": 4200 + }, + { + "path": "BCCT_ShowRes/MatColormap/brewermap.m", + "sha256": "fee6a334a7a5a9610ca863d9380459da241fc9365ed6405b977685c303cda32b", + "language": "MATLAB", + "lines": 429, + "truncated": false, + "block": 1, + "row": 4219 + }, + { + "path": "BCCT_ShowRes/MatColormap/changeorder.m", + "sha256": "48edb33df57c33adc63bd5bed0e30a5168334c49c4f1e1f3fa1c7dd56c660904", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 1, + "row": 2407 + }, + { + "path": "BCCT_ShowRes/MatColormap/darkb2r.m", + "sha256": "e73c2fa6db39106de6315e7ee50e3fc93b6e52c791ddf783b841ba06973b26ca", + "language": "MATLAB", + "lines": 133, + "truncated": false, + "block": 1, + "row": 3649 + }, + { + "path": "BCCT_ShowRes/MatColormap/esa.m", + "sha256": "9f6cdfc123b0b739347e2176210be824b3326dcd7f90a0ba6650acc078fbe503", + "language": "MATLAB", + "lines": 100, + "truncated": false, + "block": 1, + "row": 3757 + }, + { + "path": "BCCT_ShowRes/MatColormap/interpolate_cbrewer.m", + "sha256": "71d0b48356cc0c895ea82cc1ff133b46d79c4bab6670dad2adc82fc883cf0771", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 1, + "row": 2880 + }, + { + "path": "BCCT_ShowRes/MatColormap/redblue.m", + "sha256": "c1e4dc4329497f3853cc43378f92612980c22dbb258684e41978a2b80651fe82", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 1, + "row": 2811 + }, + { + "path": "BCCT_ShowRes/Show_GC_coef_subfun.m", + "sha256": "57118f345b4c5ea20c249fc1825322db422851397ad85e17da643da562e9d84e", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 1, + "row": 2907 + }, + { + "path": "BCCT_ShowRes/Show_GC_res_subfun.m", + "sha256": "3491ed5ccf6c5745decd1509ce4343acb8938c4ee9c8a001a55223872c209bd3", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 1, + "row": 2895 + }, + { + "path": "BCCT_ShowRes/Surf_Resshow_subfun.m", + "sha256": "d6cba89a1453430863766ce7564083a3e20c7387a76f6a3653b33024f103d447", + "language": "MATLAB", + "lines": 87, + "truncated": false, + "block": 1, + "row": 3390 + }, + { + "path": "BCCT_ShowRes/dynamicBC_Reslice_forshow.m", + "sha256": "abcfaa000dad97956a967b815145406d1445920e4e700a38e5fb1e2734977bfc", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 1, + "row": 2934 + }, + { + "path": "BCCT_Statistic/BCCT_CaSCN_statGUI.m", + "sha256": "428ccc697ff846d5e9a6f3ffa9f3786706704c8e8b7ebe5133e6a3c6b1350762", + "language": "MATLAB", + "lines": 164, + "truncated": false, + "block": 1, + "row": 3587 + }, + { + "path": "BCCT_Statistic/BCCT_CaSCN_stat_mainfunc.m", + "sha256": "b50ed6f6c0487825e734a0593e501040563972f9c15c010de4016dbea514647d", + "language": "MATLAB", + "lines": 434, + "truncated": false, + "block": 1, + "row": 4258 + }, + { + "path": "BCCT_Statistic/BCCT_Modulate_statGUI.m", + "sha256": "d67631de95ad4390eee49eb001a65040ff63ab1b8b8704559f4a43e16f1705a1", + "language": "MATLAB", + "lines": 165, + "truncated": false, + "block": 1, + "row": 3600 + }, + { + "path": "BCCT_Statistic/BCCT_Modulation_stat_mainfunc.m", + "sha256": "520aee6324081c415c6273d87db68dd876cb7df22cc12c5085a0c080047038c3", + "language": "MATLAB", + "lines": 338, + "truncated": false, + "block": 1, + "row": 4186 + }, + { + "path": "BCCT_Statistic/BCCT_SCN_statGUI.m", + "sha256": "3d681876799ad893b08e4b6ad0cbf37568ec2cf150baaa8a8f7aa5fed57affd0", + "language": "MATLAB", + "lines": 164, + "truncated": false, + "block": 1, + "row": 3586 + }, + { + "path": "BCCT_Statistic/BCCT_SCN_stat_mainfunc.m", + "sha256": "d58be4a5f579d3ee227d07336a2a16c68fcff2149767906ba5ec205e17002d66", + "language": "MATLAB", + "lines": 590, + "truncated": false, + "block": 1, + "row": 4293 + }, + { + "path": "BCCT_Util/BCCT_makefinalMask.m", + "sha256": "0274c972a544ed0566cbd55629a49a18ec85663cdc6addd1b84e1fcb12758ecb", + "language": "MATLAB", + "lines": 146, + "truncated": false, + "block": 1, + "row": 3556 + }, + { + "path": "BCCTcorr_WTA/AS_WTA_SepRes.m", + "sha256": "d0d0b056868ff2404451c8ec15d6792a735df042964a3ee4271878f2ecec586c", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 1, + "row": 2587 + }, + { + "path": "BCCTcorr_WTA/AS_WTA_SepRes_bat.m", + "sha256": "d8c69c35fe0a350398c22ac6c0fc76d51da301fb7d0d8208c146a0f2262b6919", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 1, + "row": 2639 + }, + { + "path": "BCCTcorr_WTA/AS_WTA_Stat_main.m", + "sha256": "d5f5e0b01bda98191665176ebd16a33ed00dbe2a744bbaca9db332498d938ed9", + "language": "MATLAB", + "lines": 223, + "truncated": false, + "block": 1, + "row": 4080 + }, + { + "path": "BCCTcorr_WTA/BCCT_WTA_GUI.m", + "sha256": "8812ab43220ac0cbc30a9a22d182d780e4ebe687d18347ae2d5450ff8ceeaaf8", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 1, + "row": 3150 + }, + { + "path": "BCCTcorr_WTA/BCCT_WTA_SetupCal.m", + "sha256": "0f138e796435b00ee1fd01483fb09001a2934f4b1ef150a5a715adc379b2a7a6", + "language": "MATLAB", + "lines": 278, + "truncated": false, + "block": 1, + "row": 3934 + }, + { + "path": "BCCTcorr_WTA/BCCT_WTA_Stat_main_ver2.m", + "sha256": "b4a80f13e5e87962fe16f9646718357ecce4ae15d74fd7cd9d3ae99910484fc1", + "language": "MATLAB", + "lines": 490, + "truncated": false, + "block": 1, + "row": 4272 + }, + { + "path": "BCCTcorr_WTA/BCCT_WTA_computemain.m", + "sha256": "323c1b31fed5804ba76d68b6b297878b764a6055c7c6f5de4ebbe546e7c81866", + "language": "MATLAB", + "lines": 301, + "truncated": false, + "block": 1, + "row": 4147 + }, + { + "path": "BCCTcorr_WTA/BCCT_WTA_statGUI.m", + "sha256": "3969a3782409dda7f7c7e577e475b0ece5e858698c7fba53a7bd6308ad4f1956", + "language": "MATLAB", + "lines": 184, + "truncated": false, + "block": 1, + "row": 3688 + }, + { + "path": "BCCTcorr_WTA/ShowResRadarSep_in.m", + "sha256": "efafe197e65074d04e0a2caa0fbf6700ab652759dd4e600154ba87d25799f2e1", + "language": "MATLAB", + "lines": 531, + "truncated": false, + "block": 1, + "row": 4237 + }, + { + "path": "BCCTcorr_WTA/ShowResSep_in.m", + "sha256": "016e1870c8d86a937064b8b50f16bbfeaac3a5d24e9ee9352930e9f8cc673628", + "language": "MATLAB", + "lines": 439, + "truncated": false, + "block": 1, + "row": 4198 + }, + { + "path": "BCCTcorr_WTA/cor2mni.m", + "sha256": "42ea85dc7fd380d86ff02ae13e3c3cc515b3d1df4e9b0e46f9246ff961adec70", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 1, + "row": 2736 + }, + { + "path": "BCCTcorr_WTA/mni2cor.m", + "sha256": "223952a31dcd814cd7ee696b7f6cdb31dc2ffe2f660c090ed895431070d7c497", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 1, + "row": 2687 + }, + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "ea46bc01b90e1fe0aa8a7fe877ef925fff5b58b65785d380a0e60e2c02345378", + "language": "Text", + "lines": 2, + "truncated": false, + "block": 1, + "row": 11762 + }, + { + "path": "supportFunc/AS_PtoTRF.m", + "sha256": "9f5f55f6a220f25c2b7ba2558c7e2ecb5698e73dc8f9585fd0de986f234c24ef", + "language": "MATLAB", + "lines": 96, + "truncated": false, + "block": 1, + "row": 3560 + }, + { + "path": "supportFunc/AS_PtoZ.m", + "sha256": "d8e8437465889f4263d09ff53f10b365acb137cfadd3ee64f9f2162352d41c7b", + "language": "MATLAB", + "lines": 4, + "truncated": false, + "block": 1, + "row": 2246 + }, + { + "path": "supportFunc/AS_TFRtoZ.m", + "sha256": "0954005b712d928581fa695fd7e65ddbc649e1bfb723e9ae0364e6509b5200ef", + "language": "MATLAB", + "lines": 84, + "truncated": false, + "block": 1, + "row": 3527 + }, + { + "path": "supportFunc/DynamicBC_write_NIFTI.m", + "sha256": "3c929ebcd9d89fe37d5c5f07d557dd0ca785b38d54e37080f452e5507e0bdfe7", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 1, + "row": 2513 + }, + { + "path": "supportFunc/Dynamic_read_dir_NIFTI.m", + "sha256": "c01c96f81fb8ef481f22a1c513d29fe52d7e6b6d61f1cf2dbe1ddb58627838f3", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 1, + "row": 2909 + }, + { + "path": "supportFunc/PlotRadarGraph.m", + "sha256": "3388ff4fe5b4b5477937b84e5b50af423d5387442d530938a58ef8f77593c02f", + "language": "MATLAB", + "lines": 97, + "truncated": false, + "block": 1, + "row": 3384 + }, + { + "path": "supportFunc/PlotRadarGraph_multi.m", + "sha256": "47f90bef5f0cd499e0945f97ebf6a904dd5107033fb8fff14869a02a6cda84fc", + "language": "MATLAB", + "lines": 105, + "truncated": false, + "block": 1, + "row": 3478 + }, + { + "path": "supportFunc/dynamicBC_Reslice.m", + "sha256": "f0fca76d61f694640b2598c7abcff9fefc3c188baf009e1268c105b792c17f9c", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 1, + "row": 3252 + }, + { + "path": "supportFunc/fdr.m", + "sha256": "6b15a4e4c45f49d41b8eb54dbc25726990d6fc558025f1ba20f77b01e441703b", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 1, + "row": 3127 + }, + { + "path": "supportFunc/surfstat/@random/char.m", + "sha256": "1eaa289f069b6cf18cc440f8e707c459afa67a73970184eacaef0542aa012b4f", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 1, + "row": 2250 + }, + { + "path": "supportFunc/surfstat/@random/display.m", + "sha256": "73785d2f35c823cc28da02a4314927a9233fb3da2b7f7c97965c39d3ca3c9cd5", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 1, + "row": 2484 + }, + { + "path": "supportFunc/surfstat/@random/double.m", + "sha256": "2ac545959a32dd6156bb41cad9020acf77f91d4a70e376fb930adb0fb57157fd", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 1, + "row": 2252 + }, + { + "path": "supportFunc/surfstat/@random/image.m", + "sha256": "ef356cdaf14a3259e2101751d089846fa56b43bc4b226e67cf63b992b8a06d09", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 1, + "row": 2838 + }, + { + "path": "supportFunc/surfstat/@random/isempty.m", + "sha256": "0e2c0586603e56a703e673c225e578924183fc6e984e53a085e66240aeba831e", + "language": "MATLAB", + "lines": 2, + "truncated": false, + "block": 1, + "row": 2257 + }, + { + "path": "supportFunc/surfstat/@random/minus.m", + "sha256": "482fbec021a59dc039660bb863caef38901040bc08e478885b0de527edaaefe9", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 1, + "row": 2594 + }, + { + "path": "supportFunc/surfstat/@random/mpower.m", + "sha256": "555ccf8860a777e08dcb4354bce395ffbdddec24228207787b1b1074947a189e", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 1, + "row": 2264 + }, + { + "path": "supportFunc/surfstat/@random/mtimes.m", + "sha256": "52ce0ece26133cbcde1a39643025a49383530931c817ab018eb5e8d50c7ad62d", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 1, + "row": 3077 + }, + { + "path": "supportFunc/surfstat/@random/plus.m", + "sha256": "28e549bed879db0620061231b4832dc3eef4cef8d751923f5286f04b0b879d26", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 1, + "row": 2592 + }, + { + "path": "supportFunc/surfstat/@random/random.m", + "sha256": "8605c0143b01702eeda5ed470bcfd070b22a691d9eb312580cc105f2c285ab85", + "language": "MATLAB", + "lines": 136, + "truncated": false, + "block": 1, + "row": 3748 + }, + { + "path": "supportFunc/surfstat/@random/size.m", + "sha256": "613805af21c98b6d912823353770a1cff772b9c0df8fb8d093c90ebebbb3c469", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 1, + "row": 2271 + }, + { + "path": "supportFunc/surfstat/@random/subsref.m", + "sha256": "1650f5e5d7d1dd779316bdb9beddf3e832ad761392713e8097022e521d82c1d8", + "language": "MATLAB", + "lines": 2, + "truncated": false, + "block": 1, + "row": 2245 + }, + { + "path": "supportFunc/surfstat/@term/char.m", + "sha256": "b5c869526a82e00af6a200026046110987c74ccb2f909724d3fe28cc97ae5218", + "language": "MATLAB", + "lines": 2, + "truncated": false, + "block": 1, + "row": 2242 + }, + { + "path": "supportFunc/surfstat/@term/display.m", + "sha256": "a63a38134ac9a23481ae49df6cded35bfeb0cc06dd1a91d52aa57014de08b48b", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 1, + "row": 2397 + }, + { + "path": "supportFunc/surfstat/@term/double.m", + "sha256": "b7cef5e215f70eb84efe463cb2086b4c6d23283e675bc4ee6c6da8383c628d1b", + "language": "MATLAB", + "lines": 2, + "truncated": false, + "block": 1, + "row": 2243 + }, + { + "path": "supportFunc/surfstat/@term/image.m", + "sha256": "0b3667e62f20723d9b98865e3312458f4d48471e89ae43fc5c8da175438466d2", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 1, + "row": 2547 + }, + { + "path": "supportFunc/surfstat/@term/isempty.m", + "sha256": "346568e40d481d7c297cea8b6b22d6bcec6df0fd582a8eff466099838bf8e239", + "language": "MATLAB", + "lines": 2, + "truncated": false, + "block": 1, + "row": 2244 + }, + { + "path": "supportFunc/surfstat/@term/minus.m", + "sha256": "8163ab9b072da16bc32e23a7ee4e37208113199aeb3822f08b9bb9eaa32e05c0", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 1, + "row": 2604 + }, + { + "path": "supportFunc/surfstat/@term/mpower.m", + "sha256": "ae455ad3570dd970e564c1e266fb663a2421a923229081d40097230a3fa6a366", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 1, + "row": 2283 + }, + { + "path": "supportFunc/surfstat/@term/mtimes.m", + "sha256": "6d95108a965323c421a39f4eb4475c77c7f81f4b1bc75b7ae9c52928a72bcfe0", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 1, + "row": 2850 + }, + { + "path": "supportFunc/surfstat/@term/plus.m", + "sha256": "bb133143d55676692677d063e24b26ef66fd1f146f0f820c1a650507f5d86ce0", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 1, + "row": 2684 + }, + { + "path": "supportFunc/surfstat/@term/size.m", + "sha256": "34b4b1c55974f6d828f1933e0cc3d787e91f84c88724fc2e0aa8049a37a70e17", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 1, + "row": 2272 + }, + { + "path": "supportFunc/surfstat/@term/subsref.m", + "sha256": "0a5e0455e6fe7d78913f6e5cf313414ebd61921991da9d745838364b35ccd631", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 1, + "row": 2316 + }, + { + "path": "supportFunc/surfstat/@term/term.m", + "sha256": "445f22f713737ff97ccebd262c406fd3791c5b0f704f16dfc8295b07f50131ea", + "language": "MATLAB", + "lines": 109, + "truncated": false, + "block": 1, + "row": 3489 + }, + { + "path": "supportFunc/surfstat/I.m", + "sha256": "d30abc7a48de55c591cd0ea333192768d16e01d72f581252d824b9926dbbea62", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 1, + "row": 2276 + }, + { + "path": "supportFunc/surfstat/SurfStatAvSurf.m", + "sha256": "04fa9beea26ee806aa0b6f1b4939c0cdd1df8103edd9891344ca08d746b43fd3", + "language": "MATLAB", + "lines": 44, + "truncated": false, + "block": 1, + "row": 2910 + }, + { + "path": "supportFunc/surfstat/SurfStatAvVol.m", + "sha256": "64be56389891ecd151f5e6ee91ab641827a2bf49fab1fb49d0a4c112fbd6679f", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 1, + "row": 3013 + }, + { + "path": "supportFunc/surfstat/SurfStatColLim.m", + "sha256": "a257ec8c66017e79ae9b6276b9cdce8c5a7af5a7871226b43e889316bf78056b", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 1, + "row": 2636 + }, + { + "path": "supportFunc/surfstat/SurfStatColormap.m", + "sha256": "3465ede4158f25365f436f89367372eed13005fb3946e6c0d64c1bbb5b846b9b", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 1, + "row": 2540 + }, + { + "path": "supportFunc/surfstat/SurfStatCoord2Ind.m", + "sha256": "b6b1bbcb0945e1980bb53e0259964333d5eca9ace50ac1246f2e30b991a7b714", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 1, + "row": 2962 + }, + { + "path": "supportFunc/surfstat/SurfStatDataCursor.m", + "sha256": "ad2c3284c7f9694b2f274313498e854a119e50180636e57b155eb5fa1bc6762d", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 1, + "row": 2507 + }, + { + "path": "supportFunc/surfstat/SurfStatDataCursorP.m", + "sha256": "2a70163ec9776fc53589ce71333f25a16b934c3475eb45aa1b64e5f313816980", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 1, + "row": 2602 + }, + { + "path": "supportFunc/surfstat/SurfStatDataCursorQ.m", + "sha256": "d7ca798cab67088e770033c1c3e75a1bd9180298d78ee7682eb33de0312bd77c", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 1, + "row": 2577 + }, + { + "path": "supportFunc/surfstat/SurfStatDelete.m", + "sha256": "9f68b2e3376861a7abd3f7f46474da26e7f4179e2d773fc79c2b5c310d500093", + "language": "MATLAB", + "lines": 70, + "truncated": false, + "block": 1, + "row": 3161 + }, + { + "path": "supportFunc/surfstat/SurfStatEdg.m", + "sha256": "c0034c841bf5f103f1c381a442965b4a69791cc18bc538bab4d8267e85d01b24", + "language": "MATLAB", + "lines": 78, + "truncated": false, + "block": 1, + "row": 3207 + }, + { + "path": "supportFunc/surfstat/SurfStatF.m", + "sha256": "bc69b6fbc60e90a9caf369972e6ef0a70f1e165670e1bd5644cf09000ae979ac", + "language": "MATLAB", + "lines": 128, + "truncated": false, + "block": 1, + "row": 3520 + }, + { + "path": "supportFunc/surfstat/SurfStatInd2Coord.m", + "sha256": "02efb77fd8d74e67bf29e16171c83abf5cbd96e594b42199c280822146a327d8", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 1, + "row": 2816 + }, + { + "path": "supportFunc/surfstat/SurfStatInflate.m", + "sha256": "7cbb3a3dc4fd3e71ebb4be07add9a276cac32a9ef8760fad10283b98ffd41dfb", + "language": "MATLAB", + "lines": 74, + "truncated": false, + "block": 1, + "row": 3260 + }, + { + "path": "supportFunc/surfstat/SurfStatLinMod.m", + "sha256": "20bbc89e361d601437e952523624f814773fcf6daca9ad94bff095f3ccc69ec5", + "language": "MATLAB", + "lines": 346, + "truncated": false, + "block": 1, + "row": 4034 + }, + { + "path": "supportFunc/surfstat/SurfStatListDir.m", + "sha256": "56003bba4a477b2a115c0538d6e84fd03ff2a29c5f00ba6a79abe5768f4d2992", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 1, + "row": 2740 + }, + { + "path": "supportFunc/surfstat/SurfStatMaskCut.m", + "sha256": "3ac588a4b0248ad3705d2dc719fabc2e92c9597b7247fb345296d012f453426e", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 1, + "row": 2579 + }, + { + "path": "supportFunc/surfstat/SurfStatNorm.m", + "sha256": "b9858ff48e04c87c2a20ee4fa6f666034444a1ca601fc971ded7be88209788d4", + "language": "MATLAB", + "lines": 82, + "truncated": false, + "block": 1, + "row": 3089 + }, + { + "path": "supportFunc/surfstat/SurfStatP.m", + "sha256": "286dca7770e071d7ae6e09560e451f9cb2c49692fa563fc8b89d1793d60caf7f", + "language": "MATLAB", + "lines": 106, + "truncated": false, + "block": 1, + "row": 3507 + }, + { + "path": "supportFunc/surfstat/SurfStatPCA.m", + "sha256": "5da752cfc1442adc060086172653730b00ca292ad9718a4d33dca22dfda43d54", + "language": "MATLAB", + "lines": 166, + "truncated": false, + "block": 1, + "row": 3533 + }, + { + "path": "supportFunc/surfstat/SurfStatPeakClus.m", + "sha256": "cf77906e3fda39214ef344ecb01efd7d39475c45c1b3bf24b9865bd79fd489d4", + "language": "MATLAB", + "lines": 147, + "truncated": false, + "block": 1, + "row": 3558 + }, + { + "path": "supportFunc/surfstat/SurfStatPlot.m", + "sha256": "9526a7a2787cc469f084cd7cc50bb4d8dfc1b6d2e72bae7eeb613bdef0d6db70", + "language": "MATLAB", + "lines": 141, + "truncated": false, + "block": 1, + "row": 3571 + }, + { + "path": "supportFunc/surfstat/SurfStatQ.m", + "sha256": "d15c65a571ac5053e417a123af5c138f91df893df5c296a2006658cc74c11224", + "language": "MATLAB", + "lines": 66, + "truncated": false, + "block": 1, + "row": 3019 + }, + { + "path": "supportFunc/surfstat/SurfStatROI.m", + "sha256": "11c5a0081e3af32fe4ebcf4536d7108321a931af1225f86ace6476ed02ff6c17", + "language": "MATLAB", + "lines": 44, + "truncated": false, + "block": 1, + "row": 2948 + }, + { + "path": "supportFunc/surfstat/SurfStatReadData.m", + "sha256": "8480a4fcf39bc8f82bee478ab3b4db4454f1bbb86fa2eed5b18d4241dd7b4ce9", + "language": "MATLAB", + "lines": 113, + "truncated": false, + "block": 1, + "row": 3473 + }, + { + "path": "supportFunc/surfstat/SurfStatReadData1.m", + "sha256": "cffc306e020ab12936f4a6c1aec32956c6980c961ba4d9c095f05b33806d38ed", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 1, + "row": 2994 + }, + { + "path": "supportFunc/surfstat/SurfStatReadSurf.m", + "sha256": "290328b184ba4198f0bde8bc6502bb2480aa1c8ebfdde5225e416eedf1235b7a", + "language": "MATLAB", + "lines": 133, + "truncated": false, + "block": 1, + "row": 3569 + }, + { + "path": "supportFunc/surfstat/SurfStatReadSurf1.m", + "sha256": "bd3ba9188ec83194fc7adad0a405a5293e7c70183b03780c0bd38431e6617cca", + "language": "MATLAB", + "lines": 164, + "truncated": false, + "block": 1, + "row": 3769 + }, + { + "path": "supportFunc/surfstat/SurfStatReadVol.m", + "sha256": "34fe8876c76b95dfa13cee175dbd174e6f16c1b18893c9bc18a51550a437ad2c", + "language": "MATLAB", + "lines": 187, + "truncated": false, + "block": 1, + "row": 3754 + }, + { + "path": "supportFunc/surfstat/SurfStatReadVol1.m", + "sha256": "d7d20b92a6f6e8b763ffebfc41c9ca498c4da054e85a9437eaa2670dd6e2b13f", + "language": "MATLAB", + "lines": 663, + "truncated": false, + "block": 1, + "row": 4199 + }, + { + "path": "supportFunc/surfstat/SurfStatResels.m", + "sha256": "5b65a3ea23abd85dbbfd29fee9d8f2e77b367e527e0731f92559e04375751c1e", + "language": "MATLAB", + "lines": 440, + "truncated": false, + "block": 1, + "row": 4211 + }, + { + "path": "supportFunc/surfstat/SurfStatSmooth.m", + "sha256": "ffa43119bf744e897d457576c879b27155f9edb4fba014289b77379ff2ebe528", + "language": "MATLAB", + "lines": 85, + "truncated": false, + "block": 1, + "row": 3171 + }, + { + "path": "supportFunc/surfstat/SurfStatStand.m", + "sha256": "8e4b297520ef3e59ef646f7c169d6847000355cf3d6373d434c245e21932e391", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 1, + "row": 2699 + }, + { + "path": "supportFunc/surfstat/SurfStatSurf2Vol.m", + "sha256": "821c6286bfe1c9ce6bfb00ef86537d195ec56280d187b655c27ab6b7d2d9243e", + "language": "MATLAB", + "lines": 85, + "truncated": false, + "block": 1, + "row": 3376 + }, + { + "path": "supportFunc/surfstat/SurfStatT.m", + "sha256": "a384ba6041ee3867195d80d16d39aff8a22c2248898742aae92fe95a6c252d07", + "language": "MATLAB", + "lines": 160, + "truncated": false, + "block": 1, + "row": 3752 + }, + { + "path": "supportFunc/surfstat/SurfStatView.m", + "sha256": "e6a2a83ad9368ddc1f8c2dadf4652f4dc370963f8cb30bcf4d943a2aa89eaf2a", + "language": "MATLAB", + "lines": 119, + "truncated": false, + "block": 1, + "row": 3584 + }, + { + "path": "supportFunc/surfstat/SurfStatView1.m", + "sha256": "0d5b6cade09eae58c0a0368c1b68a13ff11f4dea204c68a8b8d6a9583045993a", + "language": "MATLAB", + "lines": 309, + "truncated": false, + "block": 1, + "row": 4064 + }, + { + "path": "supportFunc/surfstat/SurfStatViewData.m", + "sha256": "3f3a1162ec096202fa0c71916d962934d4b58721555f2a74509405e1584373a5", + "language": "MATLAB", + "lines": 157, + "truncated": false, + "block": 1, + "row": 3685 + }, + { + "path": "supportFunc/surfstat/SurfStatViews.m", + "sha256": "15d14da1c21f4895b391964ead5ad607d2a05925d44dcc25cd35187cdd79b0e8", + "language": "MATLAB", + "lines": 91, + "truncated": false, + "block": 1, + "row": 3275 + }, + { + "path": "supportFunc/surfstat/SurfStatVol2Surf.m", + "sha256": "fdafc678a8e3c1e9f2ccb820e2159322878709ead18160fb70ac086a701850e2", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 1, + "row": 3151 + }, + { + "path": "supportFunc/surfstat/SurfStatWriteData.m", + "sha256": "097b279efbf6aa302846f7b0c8ee5efcabbf3d37eb0145877240cefb166901eb", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 1, + "row": 2862 + }, + { + "path": "supportFunc/surfstat/SurfStatWriteSurf.m", + "sha256": "63a56b5486a2d6c1bc69bfaa82b52f5abd2d58e1bfe07536d277385406c1d9da", + "language": "MATLAB", + "lines": 81, + "truncated": false, + "block": 1, + "row": 3211 + }, + { + "path": "supportFunc/surfstat/SurfStatWriteSurf1.m", + "sha256": "10f83a2e289b3e8825f966cbcbdc71c4a592d86573aed5a52ef73873a44755ed", + "language": "MATLAB", + "lines": 96, + "truncated": false, + "block": 1, + "row": 3417 + }, + { + "path": "supportFunc/surfstat/SurfStatWriteVol.m", + "sha256": "99d7cae6bdc142cac8374ecae217e89d79181b83468eb03141aa0871fb140905", + "language": "MATLAB", + "lines": 44, + "truncated": false, + "block": 1, + "row": 2881 + }, + { + "path": "supportFunc/surfstat/SurfStatWriteVol1.m", + "sha256": "998b747537d748f8bb0f995ee4616125ccde4ab55544dff130ea6f419b1ec1d5", + "language": "MATLAB", + "lines": 756, + "truncated": false, + "block": 1, + "row": 4239 + }, + { + "path": "supportFunc/surfstat/fac2var.m", + "sha256": "9ec2204a829c9cd50d16f4cf6ac3dd463af912dcc5e811e4bd72a7d5070b0665", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 1, + "row": 2486 + }, + { + "path": "supportFunc/surfstat/gl.m", + "sha256": "f91159abad41b1db3e617efb011c6b5571cf32c4a247a1c5637ab6fd8e332ab5", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 1, + "row": 2990 + }, + { + "path": "supportFunc/surfstat/redmod.m", + "sha256": "88030d13297f5eaa187619b79004169e17047387189a68f165a4f2056a1ba85e", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 1, + "row": 3119 + }, + { + "path": "supportFunc/surfstat/spectral.m", + "sha256": "3ca3c9612bc631228829131f5a3322eaf225640e11f21d204f8d4e6f02a86e66", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 1, + "row": 2766 + }, + { + "path": "supportFunc/surfstat/stat_threshold.m", + "sha256": "82dc8789d0a2bd5b0564f794e23a9434b7b89ee63cb057b07dbb9e15f9cfb469", + "language": "MATLAB", + "lines": 769, + "truncated": false, + "block": 1, + "row": 4288 + }, + { + "path": "supportFunc/surfstat/var2fac.m", + "sha256": "d005d1f2f2d53ce00282d65176e92d7d61c678285e201e0d91853ddc9a4b8ea4", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 1, + "row": 2686 + } + ] +} \ No newline at end of file diff --git a/manifests/2e/zenodo__20393275.json b/manifests/2e/zenodo__20393275.json new file mode 100644 index 0000000000000000000000000000000000000000..7119b40ef426c668865c5619898d0cd9ff4e2b09 --- /dev/null +++ b/manifests/2e/zenodo__20393275.json @@ -0,0 +1,138 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:20393275", + "url": "10.5281/zenodo.20393275", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "e73f9fb8f04bb0f2b4cc81939fb35ba3e512eda131852fdc671258001e401541", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1127 + }, + { + "path": "README.md", + "sha256": "a99badf26efa0a36e848307dea87da12ef1c637c6dac5a1a05254b1d6c1e370d", + "language": "Text", + "lines": 62, + "truncated": false, + "block": 2, + "row": 2621 + }, + { + "path": "ft_Beamformer_extractROI.m", + "sha256": "4b2590b229c57871fd772a49f9d39b3f89578d3931f3a2b37f36537eee6b0400", + "language": "MATLAB", + "lines": 291, + "truncated": false, + "block": 2, + "row": 1537 + }, + { + "path": "ft_CBPT_ROI2ROI_EMG2vsEMG3.m", + "sha256": "003d9ac5b2769efa8c1d755f37e8d96a234d1a26078486cd624c3589ce8c03b9", + "language": "MATLAB", + "lines": 328, + "truncated": false, + "block": 2, + "row": 1540 + }, + { + "path": "ft_CleanTrials.m", + "sha256": "a41dfae78766ab9121a3bfc931a09d03620e15a8a0d1fb768bd53d938e46eb8b", + "language": "MATLAB", + "lines": 140, + "truncated": false, + "block": 2, + "row": 1444 + }, + { + "path": "ft_GenTrialData.m", + "sha256": "94336b52bf6fa61a282e6ae35a24617184b106e92a476c9f467bcfa1ea175a94", + "language": "MATLAB", + "lines": 149, + "truncated": false, + "block": 2, + "row": 1442 + }, + { + "path": "ft_GlobalSurrogateAnalysis.m", + "sha256": "f7b47c11a72e56287be6e1e763b6ed1d12dc508ef7ed78c85f72d76e04a8d09f", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 2, + "row": 1290 + }, + { + "path": "ft_GraphMetrics.m", + "sha256": "b4039c8e01e82c8b4695c2a8586c2fdbde97e04e5471a8b619f5f1e7aaac7494", + "language": "MATLAB", + "lines": 79, + "truncated": false, + "block": 2, + "row": 1344 + }, + { + "path": "ft_LateralityAnalysis.m", + "sha256": "aee54e39eaa4620ac438b2f27e5ad6db6e6e7e96b5f796bf40b2bb6934207ca5", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 2, + "row": 1329 + }, + { + "path": "ft_Orthogonalized_wPLI.m", + "sha256": "19f0dbc2550ff5f4a80d826ed2211559afcfdcc6424a3d0e9e5641025507e4a3", + "language": "MATLAB", + "lines": 62, + "truncated": false, + "block": 2, + "row": 1308 + }, + { + "path": "ft_PSI_singleSub.m", + "sha256": "a72f3488f257cc1d74a82009a3edbd6fa43939a18c25626a2cc794ba794e8e18", + "language": "MATLAB", + "lines": 252, + "truncated": false, + "block": 2, + "row": 1528 + }, + { + "path": "ft_group_psi.m", + "sha256": "9f5079fa7df7a4517b17d066c241841adcb6717f9b72b691f1df3cfc72b09d37", + "language": "MATLAB", + "lines": 256, + "truncated": false, + "block": 2, + "row": 1515 + }, + { + "path": "ft_group_wPLI.m", + "sha256": "b8fd5c44e65598de303b5f07621c6998e6f09c06f926bb1b5405161b647fb3e4", + "language": "MATLAB", + "lines": 244, + "truncated": false, + "block": 2, + "row": 1509 + }, + { + "path": "ft_wPLI_singleSub.m", + "sha256": "1af500d417267ce58cbd6f722327cdc26aae41621f5c2da44c3db76868142855", + "language": "MATLAB", + "lines": 284, + "truncated": false, + "block": 2, + "row": 1523 + } + ] +} \ No newline at end of file diff --git a/manifests/2f/github.com__haoqiangye__gpdlbp.json b/manifests/2f/github.com__haoqiangye__gpdlbp.json new file mode 100644 index 0000000000000000000000000000000000000000..1832be9170845f9d7e66cb1c38aba3de793cc789 --- /dev/null +++ b/manifests/2f/github.com__haoqiangye__gpdlbp.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/haoqiangye/gpdlbp", + "url": "https://github.com/HaoqiangYe/GPDLBP", + "host": "github.com", + "commit": "d2aed220e6a9d77a3b852677a9f9e894e8d67c99", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "GPDLBP.py", + "sha256": "91e04670211b52bdc008ac5f240a36835acfcfe22b4d36d2c64f81c5d5c7613a", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 1, + "row": 6941 + }, + { + "path": "LICENSE", + "sha256": "44208e29834335ea92e902531a9bc007b7267870b4cb8cb33194e4d70bb7be9f", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2109 + }, + { + "path": "README.md", + "sha256": "82b273f72b5333b7fbe3b1e24201f6f70aebf7fae2f89b337f4cde5114c85176", + "language": "Text", + "lines": 57, + "truncated": false, + "block": 1, + "row": 11832 + }, + { + "path": "run_GPDLBP.sh", + "sha256": "b859502873a9c724d93ba33bdf6b0bd4a954516a7ce254ed04e1ca950d939379", + "language": "Shell", + "lines": 52, + "truncated": false, + "block": 1, + "row": 11667 + }, + { + "path": "running_function.py", + "sha256": "72741cd8476ef7de379af13b8ee64369f69adf4c3ac69b609c8c01e17b10bfc8", + "language": "Python", + "lines": 324, + "truncated": false, + "block": 1, + "row": 8637 + } + ] +} \ No newline at end of file diff --git a/manifests/31/github.com__frantisekvasa__rotate_parcellation.json b/manifests/31/github.com__frantisekvasa__rotate_parcellation.json new file mode 100644 index 0000000000000000000000000000000000000000..7f9aabfbf5e69a9fc0942cbc3820ddb46d3d9723 --- /dev/null +++ b/manifests/31/github.com__frantisekvasa__rotate_parcellation.json @@ -0,0 +1,75 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/frantisekvasa/rotate_parcellation", + "url": "https://github.com/frantisekvasa/rotate_parcellation", + "host": "github.com", + "commit": "65673ea7f47fca36b2982df669fc649b9a4bc5da", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "cd2b89c47023c274e24fafa4baea1d3457bbd74b1b049b72807ca7142dbc3ca7", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2153 + }, + { + "path": "Matlab/centroid_extraction_sphere.m", + "sha256": "214c881af016de201b957b5e580aba3947945ce27146175e97f8e4b30b6a1388", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 1, + "row": 3112 + }, + { + "path": "Matlab/perm_sphere_p.m", + "sha256": "cd8b2b3ae78d065bf1b8cefaac7ad5bc2c15a522e80a60068b5b69f89914081b", + "language": "MATLAB", + "lines": 93, + "truncated": false, + "block": 1, + "row": 3459 + }, + { + "path": "Matlab/rotate_parcellation.m", + "sha256": "bf5426197b2106844e1169b72b6572ab04a6394abdcfef9e88d39c0e5ac7c141", + "language": "MATLAB", + "lines": 167, + "truncated": false, + "block": 1, + "row": 3939 + }, + { + "path": "R/perm.sphere.p.R", + "sha256": "86598ec11e3b40af3cba172e3e15a42e3381c06b4ad4bfc7fa4fef0a4658850f", + "language": "R", + "lines": 52, + "truncated": false, + "block": 1, + "row": 10090 + }, + { + "path": "R/rotate.parcellation.R", + "sha256": "6086d127c8bf3aee3a9fc186fe74b4add2dac2b76818e1c61e54d73281e92a27", + "language": "R", + "lines": 216, + "truncated": false, + "block": 1, + "row": 10427 + }, + { + "path": "README.md", + "sha256": "f6d819e3b85d642ff66a2260c6e3047622f4ac247a462af37c167a79fe2a48f3", + "language": "Text", + "lines": 55, + "truncated": false, + "block": 1, + "row": 11899 + } + ] +} \ No newline at end of file diff --git a/manifests/33/github.com__hannahnjit__slotdeconv.json b/manifests/33/github.com__hannahnjit__slotdeconv.json new file mode 100644 index 0000000000000000000000000000000000000000..66f67ba94f041e37e405481b77cf6a998951f430 --- /dev/null +++ b/manifests/33/github.com__hannahnjit__slotdeconv.json @@ -0,0 +1,84 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/hannahnjit/slotdeconv", + "url": "https://github.com/HannahNJIT/SlotDeconv", + "host": "github.com", + "commit": "5819b15a6acc9e753a16c1c781ca0b155edfc7fa", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "b50eb3e0879624c71aed6b3d27dfab914b3cf77c4ee00f5b3f0dcadb6b692dae", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2171 + }, + { + "path": "README.md", + "sha256": "1d7f910968a7fc8c2707b9236a67923b7068de2a604647c60c013eadd4bd993b", + "language": "Text", + "lines": 132, + "truncated": false, + "block": 1, + "row": 11921 + }, + { + "path": "model/plot.py", + "sha256": "69505384ddce4c5ee285c504a5e135bfc143e40582cae3971f606800a0a3dc61", + "language": "Python", + "lines": 220, + "truncated": false, + "block": 1, + "row": 8506 + }, + { + "path": "model/run_slot.py", + "sha256": "fb7fd9580be6a17fb95735413c63748bc5d6559ac9f73a1ede3be842eb5743de", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 1, + "row": 7526 + }, + { + "path": "model/slot_model.py", + "sha256": "fa2c32b0cb305a9f4738b4b0e2a8c9d2e62afc32d0e4a45ff41db76caa3ebeca", + "language": "Python", + "lines": 477, + "truncated": false, + "block": 1, + "row": 9456 + }, + { + "path": "model/slot_utility.py", + "sha256": "6e92d06fcdcbe6b998f96c3a7e3833c927c4ac1595848d51b98db9c4ee9d04c8", + "language": "Python", + "lines": 234, + "truncated": false, + "block": 1, + "row": 8488 + }, + { + "path": "model/visz.py", + "sha256": "feae8818b6ccc43f5bbbb5ffc9208d99a268451c5fcb4eee30b1b6106a032b5c", + "language": "Python", + "lines": 783, + "truncated": false, + "block": 1, + "row": 9702 + }, + { + "path": "tutorial.ipynb", + "sha256": "b8427c5ba7e38e2169a798db71e03cc1a2c787e5c1bbca0dd89fc7e6b42f4723", + "language": "Jupyter", + "lines": 148, + "truncated": false, + "block": 1, + "row": 1775 + } + ] +} \ No newline at end of file diff --git a/manifests/33/zenodo__17534724.json b/manifests/33/zenodo__17534724.json new file mode 100644 index 0000000000000000000000000000000000000000..5462968b7e5224746e9728bda43c6dc7bb1ea3fa --- /dev/null +++ b/manifests/33/zenodo__17534724.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:17534724", + "url": "10.5281/zenodo.17534724", + "host": "zenodo.org", + "commit": "", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "278d567f0fa19cc3cb50542885fdc8a9c455242ac32d5fde51be08f3c6150ff0", + "language": "Text", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11789 + }, + { + "path": "TFfindRespFreq2_scirep.m", + "sha256": "e9401e0dcba8db96185227f8857d15994241103f98a243ace9b58615abc7bf0d", + "language": "MATLAB", + "lines": 128, + "truncated": false, + "block": 1, + "row": 3386 + }, + { + "path": "find_threshold.m", + "sha256": "a664c34bfce2e0a0b1059cabbc356c115af05958b27b5e6c799ad8a76431858f", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 1, + "row": 3078 + }, + { + "path": "launch_SmartERD.m", + "sha256": "0f4f5c4e007174b86eff067892dd3ec1c1f331075c452c13e25b8146e796cf54", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 1, + "row": 2447 + } + ] +} \ No newline at end of file diff --git a/manifests/33/zenodo__20139187.json b/manifests/33/zenodo__20139187.json new file mode 100644 index 0000000000000000000000000000000000000000..94a3d2e2a7bc469ce1f5a08a294e7fa8e864590d --- /dev/null +++ b/manifests/33/zenodo__20139187.json @@ -0,0 +1,309 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:20139187", + "url": "10.5281/zenodo.20139187", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "Extended Data Fig 2b_code.R", + "sha256": "63365a197c97394c8a7990268c82c81ceb18834268bdfb113c48326ed09eb001", + "language": "R", + "lines": 14, + "truncated": false, + "block": 1, + "row": 10013 + }, + { + "path": "Extended Data Fig 2c,d_code.R", + "sha256": "c12d28986f4078e63efd620c6390828c224840a5ed8e70bc6480c2f83158834a", + "language": "R", + "lines": 9, + "truncated": false, + "block": 1, + "row": 9977 + }, + { + "path": "Extended Data Fig 3d,e_code.R", + "sha256": "f973b98b14cca7e820aa3a1b252d74daf6e03865fb99f8ae5b589582b4dd2f83", + "language": "R", + "lines": 19, + "truncated": false, + "block": 1, + "row": 10005 + }, + { + "path": "Extended Data Fig 3f_code_All_Plots.R", + "sha256": "88e1767b41f9d600ffda41cb8a3464e0370ce5d4b1da4200f700927c2cc8db00", + "language": "R", + "lines": 42, + "truncated": false, + "block": 1, + "row": 10167 + }, + { + "path": "Extended Data Fig 3g_code.R", + "sha256": "6b0e69013d92cbbc37b3a206601d7c08e8b5ca6feb8fde225b66da381bd13c6e", + "language": "R", + "lines": 15, + "truncated": false, + "block": 1, + "row": 10064 + }, + { + "path": "Extended Data Fig 4c_code.R", + "sha256": "b9dd88e4dc0028c54d255e6dee4c66bed784fea1028d6e07cc78149fc51a2faa", + "language": "R", + "lines": 8, + "truncated": false, + "block": 1, + "row": 9924 + }, + { + "path": "Extended Data Fig 5b,c,d,e_code.R", + "sha256": "1c51f7352d562dffaf721b95f63419a3b57ef037ac89f55623d150866b137ee7", + "language": "R", + "lines": 43, + "truncated": false, + "block": 1, + "row": 10044 + }, + { + "path": "Extended Data Fig 6a,b,c,d_code.R", + "sha256": "4ce443ec48326a6c51fa3f37a986eb2264b9f41694810e25873b47ecf6f2388b", + "language": "R", + "lines": 38, + "truncated": false, + "block": 1, + "row": 10195 + }, + { + "path": "Extended Data Fig 8l_code.R", + "sha256": "4f8e7c97cd002c3c67e6e5adea0a08b8dcc6d14cad6dc57695a6f4da5a644d20", + "language": "R", + "lines": 10, + "truncated": false, + "block": 1, + "row": 9956 + }, + { + "path": "Extended Data Fig 9d,g_code.py", + "sha256": "f9be2654289d1c02f5d105fff603ef7b1f463df64c5b34c4ee0a1d040c52ad25", + "language": "Python", + "lines": 351, + "truncated": false, + "block": 1, + "row": 8717 + }, + { + "path": "Fig.1b_code.R", + "sha256": "5a9b3c7dceac6f9080f9682c3f1d4314dad64c72c290a7e8e30651f5b1a701c9", + "language": "R", + "lines": 10, + "truncated": false, + "block": 1, + "row": 9934 + }, + { + "path": "Fig.1f_code.R", + "sha256": "fb646421790c86e9a2fc7b185432b718c88bcebdf89105b85edb49dd5c663a40", + "language": "R", + "lines": 8, + "truncated": false, + "block": 1, + "row": 9945 + }, + { + "path": "Fig.2b_code.R", + "sha256": "2f751723d1447677111058b6b6af37f19356f58f60904a35b6ce9f8f97e65b8c", + "language": "R", + "lines": 9, + "truncated": false, + "block": 1, + "row": 9941 + }, + { + "path": "Fig.2c_code.R", + "sha256": "733e1aa8d80e22a41eb4983a5f2302ed3cab747e8ec39824a6b493978f6dcc20", + "language": "R", + "lines": 22, + "truncated": false, + "block": 1, + "row": 10030 + }, + { + "path": "Fig.2d,e_code.R", + "sha256": "5f107f3ddf5e0cc3bdd51c41eb01990194fe2821c37cb3ccb493b371f63cd212", + "language": "R", + "lines": 28, + "truncated": false, + "block": 1, + "row": 10080 + }, + { + "path": "Fig.2f,g_code.R", + "sha256": "35c9cd42b8d67920c91db5badba835dd61198ffc87883b4525712cd4e646680c", + "language": "R", + "lines": 13, + "truncated": false, + "block": 1, + "row": 9999 + }, + { + "path": "Fig.2h_code.R", + "sha256": "520e41992f1e0c70ee5ff39b8d892eea7a44d01268f04781ab417972aedfb1ff", + "language": "R", + "lines": 11, + "truncated": false, + "block": 1, + "row": 9982 + }, + { + "path": "Fig.2j_code.R", + "sha256": "39e13c02155cf8aa14ab8dfacff6a6014cc3ab8b403b7b681632b3f7764ffe6a", + "language": "R", + "lines": 12, + "truncated": false, + "block": 1, + "row": 9964 + }, + { + "path": "Fig.3d_code.R", + "sha256": "0ef74f89ae2a5621ee86fe0c80fcfd446c06e279533fdde324c0313a2d665978", + "language": "R", + "lines": 6, + "truncated": false, + "block": 1, + "row": 9943 + }, + { + "path": "Fig.4b_code.R", + "sha256": "bcaa8757325c478b415ea266b11adc134f9da29b4f21461dca3b23d143b03984", + "language": "R", + "lines": 40, + "truncated": false, + "block": 1, + "row": 10116 + }, + { + "path": "Fig.4d_code.R", + "sha256": "5d230c4ac7e54dc791e694ecb4051dfb43c940632bdeb31430707be7e6274d2f", + "language": "R", + "lines": 40, + "truncated": false, + "block": 1, + "row": 10111 + }, + { + "path": "Fig.4e_code.R", + "sha256": "e140c8adfd3377306a5ab74c159617b4204ed95a6ac087794d281c27743be172", + "language": "R", + "lines": 13, + "truncated": false, + "block": 1, + "row": 9942 + }, + { + "path": "Fig.4f_code.R", + "sha256": "4716d0da8ef316b03fff7a17eb6a0ef05d988cba0374cb539c92a7bbd396ba82", + "language": "R", + "lines": 8, + "truncated": false, + "block": 1, + "row": 9933 + }, + { + "path": "Fig.7e_code.R", + "sha256": "41b43a5103eeecb84a8e5190e86a4b55067e16c52549f8cb853442fab9a10b1a", + "language": "R", + "lines": 71, + "truncated": false, + "block": 1, + "row": 10069 + }, + { + "path": "Figure S1d_code.R", + "sha256": "84dd55cd4f0df95f0dacab2e651a681e47a1f3a3e1d0732aa510495f1e5fed04", + "language": "R", + "lines": 8, + "truncated": false, + "block": 1, + "row": 9960 + }, + { + "path": "Figure S1i_code.R", + "sha256": "049c199c9bcece5e53df95a39931cb001fee40aa875c43a6e5f00cc95e43a563", + "language": "R", + "lines": 7, + "truncated": false, + "block": 1, + "row": 9935 + }, + { + "path": "Figure S1j_code.R", + "sha256": "0177529708e457e751674b41538b0ff73bf06e4792ba84651770e8b0d303c748", + "language": "R", + "lines": 5, + "truncated": false, + "block": 1, + "row": 9911 + }, + { + "path": "Figure S1k_code.R", + "sha256": "e66695c0a709a243e879f063f9d665aca41c7dcb8d56c142c94be48e7968d6ce", + "language": "R", + "lines": 6, + "truncated": false, + "block": 1, + "row": 9914 + }, + { + "path": "Figure S2b_code.R", + "sha256": "e546b6084e70d10ed6b7c78e04a323f0ab07076b442ced38e768df4905b39bcb", + "language": "R", + "lines": 14, + "truncated": false, + "block": 1, + "row": 9993 + }, + { + "path": "Figure S2c,d,e_code.R", + "sha256": "f53d9cb5376ceddca256203002a5f101075f61b76014b31f9fd2b66539512b00", + "language": "R", + "lines": 20, + "truncated": false, + "block": 1, + "row": 10073 + }, + { + "path": "Figure S3a,b_code.R", + "sha256": "c7867bd165e25485b9b685ad672b78eb38da09a5507f692d5e0b5a4607537280", + "language": "R", + "lines": 18, + "truncated": false, + "block": 1, + "row": 9998 + }, + { + "path": "Figure S3f_code.R", + "sha256": "1cfef547241ecd993ea1897673a73c3bd5dd4ccccdcd848ba21853952132ece7", + "language": "R", + "lines": 5, + "truncated": false, + "block": 1, + "row": 9925 + }, + { + "path": "Figure S4e_code.R", + "sha256": "17658259d2ac01e56f62e17d0f0eed663b628fa0705eb090c3167d6f79faf5e2", + "language": "R", + "lines": 12, + "truncated": false, + "block": 1, + "row": 9984 + } + ] +} \ No newline at end of file diff --git a/manifests/34/zenodo__21959626.json b/manifests/34/zenodo__21959626.json new file mode 100644 index 0000000000000000000000000000000000000000..507b4458a9ebdce2182494edf5b6dd3b084c6ae4 --- /dev/null +++ b/manifests/34/zenodo__21959626.json @@ -0,0 +1,66 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:21959626", + "url": "10.5281/zenodo.21959626", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "Fig1_4.m", + "sha256": "2e4eb0fe3ba833778b709bb3e98ec07f30817876c3cb30969705c95718f9cfba", + "language": "MATLAB", + "lines": 162, + "truncated": false, + "block": 1, + "row": 3885 + }, + { + "path": "Fig2.m", + "sha256": "2e991c878e87fd017841ae398a5cd06cf50bd764e5b8384d8e34e9ce22722a26", + "language": "MATLAB", + "lines": 186, + "truncated": false, + "block": 1, + "row": 3829 + }, + { + "path": "Fig3_6.m", + "sha256": "e6433d0c02ec2bd43338e7aaada158c00be7e7386eb3928900d57ec31f37b746", + "language": "MATLAB", + "lines": 226, + "truncated": false, + "block": 1, + "row": 3893 + }, + { + "path": "Fig4.m", + "sha256": "aa47784c942ee2c92062c7b522c8115ae59fab8df98fd0cb10c24d18bd05405a", + "language": "MATLAB", + "lines": 197, + "truncated": false, + "block": 1, + "row": 3925 + }, + { + "path": "Fig5.m", + "sha256": "ce8efb098e1b7825de24feccc051f9ec96d272a31f327662153a2ea59dbca094", + "language": "MATLAB", + "lines": 96, + "truncated": false, + "block": 1, + "row": 3418 + }, + { + "path": "Fig7.m", + "sha256": "9bf6fca0bf96e02b268dc42e246a88352a6de2d862e1b695b901543829d3b0e4", + "language": "MATLAB", + "lines": 129, + "truncated": false, + "block": 1, + "row": 3652 + } + ] +} \ No newline at end of file diff --git a/manifests/35/github.com__dmcable__spacexr.json b/manifests/35/github.com__dmcable__spacexr.json new file mode 100644 index 0000000000000000000000000000000000000000..b561f1a247bd01cd1066a034304b5be61e3ee241 --- /dev/null +++ b/manifests/35/github.com__dmcable__spacexr.json @@ -0,0 +1,948 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/dmcable/spacexr", + "url": "https://github.com/dmcable/spacexr/blob/master/vignettes/spatial-transcriptomics.Rmd", + "host": "github.com", + "commit": "9f5dc33c8060f946c6072a138b70e189636e1435", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "AnalysisCSIDE/Figures/figure2.Rmd", + "sha256": "ca13481def4f66bb823e2f5e2c4098c32549586ddf282f2afdd27bcaf7324fc7", + "language": "R", + "lines": 349, + "truncated": false, + "block": 1, + "row": 10526 + }, + { + "path": "AnalysisCSIDE/Figures/figure3.Rmd", + "sha256": "b16f6511233f47d6a51c4e4aae714a15b8559e6f5d5a2f2e4c007bb27d56e0ad", + "language": "R", + "lines": 180, + "truncated": false, + "block": 1, + "row": 10414 + }, + { + "path": "AnalysisCSIDE/Figures/figure4_j20.Rmd", + "sha256": "9e233d09fd48f17d269290f78a90a38905266e20345dd64b40c80bfb1ac2edf8", + "language": "R", + "lines": 203, + "truncated": false, + "block": 1, + "row": 10430 + }, + { + "path": "AnalysisCSIDE/Figures/figure4_merfish.Rmd", + "sha256": "15558e8e659cf24d78755fc9e7f98f652d9b62ef7cf75297d3e25f510b5e48ed", + "language": "R", + "lines": 287, + "truncated": false, + "block": 1, + "row": 10529 + }, + { + "path": "AnalysisCSIDE/Figures/figure4_testes.Rmd", + "sha256": "043d3ab00ab353088c9e26ad787bc5adb765de2f09e53f35b8b3eeee8e253826", + "language": "R", + "lines": 315, + "truncated": false, + "block": 1, + "row": 10500 + }, + { + "path": "AnalysisCSIDE/Figures/figure4_visium.Rmd", + "sha256": "5badb7637ec2f78634951707881a93ee4d1f04cbbb164d9a1d85b1494bc54a76", + "language": "R", + "lines": 206, + "truncated": false, + "block": 1, + "row": 10462 + }, + { + "path": "AnalysisCSIDE/Figures/figure5_nonparametric.Rmd", + "sha256": "2048bcf7bb95a2553e039cfdc6821608914fc27036f741dc47073ab3789ed8dc", + "language": "R", + "lines": 254, + "truncated": false, + "block": 1, + "row": 10442 + }, + { + "path": "AnalysisCSIDE/Figures/figure5_parametric.Rmd", + "sha256": "bbef2712ddd9664cc100d2dd2a56a93c211d7543b3ff4e52b3c681b00ac070e3", + "language": "R", + "lines": 213, + "truncated": false, + "block": 1, + "row": 10467 + }, + { + "path": "AnalysisCSIDE/Figures/supp1.Rmd", + "sha256": "4515e6b1ed950e8024f4039168084d319279e7ba86147da46001dd0fbff01b0d", + "language": "R", + "lines": 478, + "truncated": false, + "block": 1, + "row": 10571 + }, + { + "path": "AnalysisCSIDE/Figures/supp2.Rmd", + "sha256": "5d5cd24dee38b3b20963ca326ab6012a0c3bd4d0b15bb5f22c69330ce7123179", + "language": "R", + "lines": 215, + "truncated": false, + "block": 1, + "row": 10435 + }, + { + "path": "AnalysisCSIDE/Figures/supp3.Rmd", + "sha256": "02acf39d0f097c3bef2a9aa6f9d532912379f06d59524176ba1d8921afb228f0", + "language": "R", + "lines": 180, + "truncated": false, + "block": 1, + "row": 10352 + }, + { + "path": "AnalysisCSIDE/Figures/supp4.Rmd", + "sha256": "8aab489f0f4109dce666b67f1692eed0d4d373f1b59b932ce1096cf81c9dd016", + "language": "R", + "lines": 92, + "truncated": false, + "block": 1, + "row": 10260 + }, + { + "path": "AnalysisCSIDE/Figures/supp5.Rmd", + "sha256": "1839222fd9d8c7f5fe830358e0b0a62623751ba3c6dbf22d9d147529706150fb", + "language": "R", + "lines": 364, + "truncated": false, + "block": 1, + "row": 10523 + }, + { + "path": "AnalysisCSIDE/Figures/supp6.Rmd", + "sha256": "67dc76d6b07c2858db3dca1145dfacf5966e693dd813a360cc1ab6f2038978ea", + "language": "R", + "lines": 81, + "truncated": false, + "block": 1, + "row": 10173 + }, + { + "path": "AnalysisCSIDE/Figures/supp7.Rmd", + "sha256": "cb95728c988431012d774ebbf58d18c2fb16a8f3c4ba9bc419d0211e6e6a4cbf", + "language": "R", + "lines": 212, + "truncated": false, + "block": 1, + "row": 10421 + }, + { + "path": "AnalysisCSIDE/Figures/supp8.Rmd", + "sha256": "3f53fe6ee9e7ff1225db9e0af65591cd242312427bb5b609cf54ee712ddeb437", + "language": "R", + "lines": 166, + "truncated": false, + "block": 1, + "row": 10351 + }, + { + "path": "AnalysisCSIDE/Preprocessing_and_RCTD/cer_reps.R", + "sha256": "8b43516a5ac225943426613c3e009d6804b88cc0af93e3fc8b0185605d9709c7", + "language": "R", + "lines": 90, + "truncated": false, + "block": 1, + "row": 10221 + }, + { + "path": "AnalysisCSIDE/Preprocessing_and_RCTD/run_RCTD_testes.R", + "sha256": "25ef2e57b780ae112aa805547b18446a88fdc0cc62b8cae83d2dcbe34a5f3be8", + "language": "R", + "lines": 33, + "truncated": false, + "block": 1, + "row": 10032 + }, + { + "path": "AnalysisCSIDE/README.Rmd", + "sha256": "c473770aac083c9adec41c59d229463d751e8bccdbaec8239c6f0d1783c5da85", + "language": "R", + "lines": 110, + "truncated": false, + "block": 1, + "row": 10387 + }, + { + "path": "AnalysisCSIDE/helper_functions/alzheimers_helper.R", + "sha256": "4dbe6c0e7d2a771414e33c365d823bb854e09cca639cc1c85fae3218686b9ba1", + "language": "R", + "lines": 216, + "truncated": false, + "block": 1, + "row": 10370 + }, + { + "path": "AnalysisCSIDE/helper_functions/de_simulation_helper.R", + "sha256": "7492049ba0d54ce5144cfb04de93e37d8665c232a8aeca4e8ce1ca1f5835c6ea", + "language": "R", + "lines": 135, + "truncated": false, + "block": 1, + "row": 10348 + }, + { + "path": "AnalysisCSIDE/helper_functions/merge_de_helper.R", + "sha256": "1a2a756890cb98d7373494b7f4341d17830a3e5a9bfc6219069c1dff8bf59b23", + "language": "R", + "lines": 48, + "truncated": false, + "block": 1, + "row": 10107 + }, + { + "path": "AnalysisCSIDE/helper_functions/personal_utils.R", + "sha256": "167e1d72416fb9e737a82b864943a9aa1c2f2b46eafd2d40f648e1f7751e6064", + "language": "R", + "lines": 35, + "truncated": false, + "block": 1, + "row": 10065 + }, + { + "path": "AnalysisCSIDE/helper_functions/testes_helper.R", + "sha256": "6fecafa2d419452e6cbd64cadc266b17ff27001b03d88eaf79bebb9970845c05", + "language": "R", + "lines": 263, + "truncated": false, + "block": 1, + "row": 10486 + }, + { + "path": "AnalysisCSIDE/image_analysis/hcr.R", + "sha256": "256d7ffde3047fa08a6f4b3199ec066b15bf741f15df499e5ce1211e93ff62c0", + "language": "R", + "lines": 110, + "truncated": false, + "block": 1, + "row": 10133 + }, + { + "path": "AnalysisCSIDE/image_analysis/overlay.R", + "sha256": "b03c3985b7b235243d3db763bced4d909d867f9397770dfc34659eaa16703bf4", + "language": "R", + "lines": 27, + "truncated": false, + "block": 1, + "row": 10014 + }, + { + "path": "AnalysisCSIDE/j20/align_plaque_density.R", + "sha256": "ca85a7d67f72ed8ac57dc569df9706cf5f48698e24c27cc77dc202523e8e0ab0", + "language": "R", + "lines": 58, + "truncated": false, + "block": 1, + "row": 10123 + }, + { + "path": "AnalysisCSIDE/j20/create_pd.R", + "sha256": "9bfdb7cbe23e7a070d62cda52d44e7b4f8b8b3937af512a2d94a5a48774d2a8b", + "language": "R", + "lines": 14, + "truncated": false, + "block": 1, + "row": 9944 + }, + { + "path": "AnalysisCSIDE/j20/pd_to_exvar.R", + "sha256": "fab4dd1ae3cfb9fb3f5703e6ded4e7af3f80f2c6ebcf8b8b0c5f9603a9f81ea8", + "language": "R", + "lines": 81, + "truncated": false, + "block": 1, + "row": 10184 + }, + { + "path": "AnalysisCSIDE/j20/preprocess_j20.R", + "sha256": "dfc26175164905eee2a48760ce54d78b9f0830ba970eefedf1e3099ea454650f", + "language": "R", + "lines": 45, + "truncated": false, + "block": 1, + "row": 10109 + }, + { + "path": "AnalysisCSIDE/j20/run_CSIDE_j20_21.R", + "sha256": "b023e43feaa5a635928e563cd1c545b9769f93531ad7fb52c458d236ae4dd10c", + "language": "R", + "lines": 14, + "truncated": false, + "block": 1, + "row": 9951 + }, + { + "path": "AnalysisCSIDE/j20/run_CSIDE_j20_22.R", + "sha256": "01c1d244b8cefb869e9271136d4fd5d8ea9173f2b432b5c9c1274cf11128d979", + "language": "R", + "lines": 14, + "truncated": false, + "block": 1, + "row": 9948 + }, + { + "path": "AnalysisCSIDE/j20/run_CSIDE_j20_23.R", + "sha256": "149922ada102d029422ba6f906e512daf9a891810cb43eb16d40928ec81541a8", + "language": "R", + "lines": 14, + "truncated": false, + "block": 1, + "row": 9949 + }, + { + "path": "AnalysisCSIDE/j20/run_CSIDE_j20_24.R", + "sha256": "9888db7f41b9737903f71317b1880b0676b868f1b2a7aed2852433fded8d2b77", + "language": "R", + "lines": 14, + "truncated": false, + "block": 1, + "row": 9950 + }, + { + "path": "AnalysisCSIDE/j20/run_RCTD_j20_21.R", + "sha256": "a3427765d658eedd16ef445e09f17a700b24002be89fd4447e6c8c5e50b41a5a", + "language": "R", + "lines": 20, + "truncated": false, + "block": 1, + "row": 9969 + }, + { + "path": "AnalysisCSIDE/j20/run_RCTD_j20_22.R", + "sha256": "54c9395ccc994cbf18778124b59f50af333b29887870de4234a57feabdede2f8", + "language": "R", + "lines": 20, + "truncated": false, + "block": 1, + "row": 9967 + }, + { + "path": "AnalysisCSIDE/j20/run_RCTD_j20_23.R", + "sha256": "822fd45b944a138d80ef899c0fdc618a7a36d4893c3bfbde106b17f4c8bca9e3", + "language": "R", + "lines": 20, + "truncated": false, + "block": 1, + "row": 9968 + }, + { + "path": "AnalysisCSIDE/j20/run_RCTD_j20_24.R", + "sha256": "d768101e77b7c702653d6b4717ed426bb4022b34fcf2d0e6a828b71c2b538069", + "language": "R", + "lines": 20, + "truncated": false, + "block": 1, + "row": 9970 + }, + { + "path": "AnalysisCSIDE/run_CSIDE/run_de_cer_08.R", + "sha256": "6f226348749bc7675957655f1f54b8ed4c0075691894607eea3d47730c8dc4b8", + "language": "R", + "lines": 49, + "truncated": false, + "block": 1, + "row": 10140 + }, + { + "path": "AnalysisCSIDE/run_CSIDE/run_de_cer_09.R", + "sha256": "286faf4653bdab6a9a3adf9a66ae3b1d334e5e6a0381edc3f883ef54735a4378", + "language": "R", + "lines": 34, + "truncated": false, + "block": 1, + "row": 10087 + }, + { + "path": "AnalysisCSIDE/run_CSIDE/run_de_cer_11.R", + "sha256": "cfb777bb94c77554181405aa31a31d79e273a4e69ee9d5421c7d308eb7d4d55f", + "language": "R", + "lines": 34, + "truncated": false, + "block": 1, + "row": 10088 + }, + { + "path": "AnalysisCSIDE/run_CSIDE/run_de_merfish.R", + "sha256": "673da9c57e13ca8b54d2e8b7e6d73b47107ac14e55fa2a1fd3f34e9a5e60fadd", + "language": "R", + "lines": 190, + "truncated": false, + "block": 1, + "row": 10373 + }, + { + "path": "AnalysisCSIDE/run_CSIDE/run_de_nonparametric.R", + "sha256": "ae7503c3dbd38de5a0fc3707c1323686744fd33efb56f4b6d94455acf3fb0379", + "language": "R", + "lines": 25, + "truncated": false, + "block": 1, + "row": 9989 + }, + { + "path": "AnalysisCSIDE/run_CSIDE/run_de_testes.R", + "sha256": "dce7dad126564e63c7c04a0a6e952309b2fa246a954b5718e9acd7e136285fa8", + "language": "R", + "lines": 70, + "truncated": false, + "block": 1, + "row": 10152 + }, + { + "path": "AnalysisCSIDE/run_CSIDE/run_de_tumor.R", + "sha256": "e5b963398dc67324762c54b3f84caab565103863f40a9b89da9a3bb4e3f67fe7", + "language": "R", + "lines": 138, + "truncated": false, + "block": 1, + "row": 10343 + }, + { + "path": "AnalysisPaper/MainFigures/Updated-Compatability/figure2-platform-effect.Rmd", + "sha256": "0e25f28564b41fc0ea0a505d0ba96cb6fde8a3316570101285f062cc88a4e67e", + "language": "R", + "lines": 69, + "truncated": false, + "block": 1, + "row": 10151 + }, + { + "path": "AnalysisPaper/MainFigures/figure1.Rmd", + "sha256": "900cc0d91780ed831b7d5d0bd79de413e3dea9c9fe8de9c143ebccb2f7e9d5bf", + "language": "R", + "lines": 155, + "truncated": false, + "block": 1, + "row": 10374 + }, + { + "path": "AnalysisPaper/MainFigures/figure2-platform-effect.Rmd", + "sha256": "36966ccbf9987b23a9e3d445c3af50ea1e06638e35da63413946890b93c9bde5", + "language": "R", + "lines": 72, + "truncated": false, + "block": 1, + "row": 10164 + }, + { + "path": "AnalysisPaper/MainFigures/figure2.Rmd", + "sha256": "8b1d173afaaaa4e47c629ec0c82b432abb9758f60239527402aa8e2746f240be", + "language": "R", + "lines": 192, + "truncated": false, + "block": 1, + "row": 10418 + }, + { + "path": "AnalysisPaper/MainFigures/figure3.Rmd", + "sha256": "0e33762a3d2348fcf9ccd94410661a7e11562c0de42b3112cc141278a39c04ad", + "language": "R", + "lines": 285, + "truncated": false, + "block": 1, + "row": 10509 + }, + { + "path": "AnalysisPaper/MainFigures/figure4.Rmd", + "sha256": "836f307991f36c5603c0bddb4652791af3b31ed34c6d34d14ee2b7b1dfcdda96", + "language": "R", + "lines": 214, + "truncated": false, + "block": 1, + "row": 10491 + }, + { + "path": "AnalysisPaper/MainFigures/figure5-all.Rmd", + "sha256": "0f31af9ea6fc19daacfd0a3c5a8af4512e99041f42bc3994df3491ec34cf7811", + "language": "R", + "lines": 213, + "truncated": false, + "block": 1, + "row": 10473 + }, + { + "path": "AnalysisPaper/MainFigures/figure5-interneurons.Rmd", + "sha256": "c7de66d7e26aced6510cf97caab1b88515d3f4141c72c1393bb626f07b52b2fa", + "language": "R", + "lines": 277, + "truncated": false, + "block": 1, + "row": 10506 + }, + { + "path": "AnalysisPaper/MainFigures/figure6-astrocytes.Rmd", + "sha256": "50598043d66a07e7f0df724f471863ba07505ee8e3c8afd1522b742c70c1bbf6", + "language": "R", + "lines": 221, + "truncated": false, + "block": 1, + "row": 10464 + }, + { + "path": "AnalysisPaper/MainFigures/figure6-spatialgenes.Rmd", + "sha256": "5affff25186417eab48821627365865f356e5318b63b54cfcfb08661961d42c4", + "language": "R", + "lines": 224, + "truncated": false, + "block": 1, + "row": 10434 + }, + { + "path": "AnalysisPaper/Plotting/figure_utils.R", + "sha256": "b42a70f0166e30ca35a2e1db885c1d529efd0e052c38373c62ea105ccdaf611c", + "language": "R", + "lines": 262, + "truncated": false, + "block": 1, + "row": 10494 + }, + { + "path": "AnalysisPaper/README.Rmd", + "sha256": "4d8ec315effade89954cf8af39baba1cd84164084870a1fd39f9a2e2985fe855", + "language": "R", + "lines": 70, + "truncated": false, + "block": 1, + "row": 10286 + }, + { + "path": "AnalysisPaper/Rscripts/doubletsimulation.R", + "sha256": "98a1e522741b947193bc971b35ade57465f86b77c2efc7506798042e0ee95799", + "language": "R", + "lines": 61, + "truncated": false, + "block": 1, + "row": 10178 + }, + { + "path": "AnalysisPaper/Rscripts/dropSeqProcess.R", + "sha256": "ff4a1feb8c1e8b586cd0e64db8b6b1811a2a7a96c70b741816872bd29b797275", + "language": "R", + "lines": 19, + "truncated": false, + "block": 1, + "row": 9990 + }, + { + "path": "AnalysisPaper/Rscripts/prepareNMF.R", + "sha256": "112dc791afd9af0c4e5c2883543a4d573aa51734a3361cd4cc1ef0018b22a704", + "language": "R", + "lines": 30, + "truncated": false, + "block": 1, + "row": 10026 + }, + { + "path": "AnalysisPaper/Rscripts/processNMF.R", + "sha256": "e3460cd880395a373a995d06406d102261c4123470b2d331b3eec55b3f7e9ce0", + "language": "R", + "lines": 20, + "truncated": false, + "block": 1, + "row": 10000 + }, + { + "path": "AnalysisPaper/Rscripts/processVisium.R", + "sha256": "e5d377daa9fcb06428b5e2ebd61333a07d5530cac3030e3b8f6424873dec95f1", + "language": "R", + "lines": 33, + "truncated": false, + "block": 1, + "row": 10086 + }, + { + "path": "AnalysisPaper/Rscripts/subcluster.R", + "sha256": "897a290c520f85fea87d6c7f5f4f7c84cb38d7d1b67522ccde8d7d833b4e8d6d", + "language": "R", + "lines": 91, + "truncated": false, + "block": 1, + "row": 10289 + }, + { + "path": "AnalysisPaper/Rscripts/weightDecompose.R", + "sha256": "a10c418c664e0f2ab88158f1d2c0d308a93fa627fe298ea33a5ed5b8c77c903d", + "language": "R", + "lines": 30, + "truncated": false, + "block": 1, + "row": 10036 + }, + { + "path": "AnalysisPaper/SuppFigures/supp.Rmd", + "sha256": "48e3282727aa06a4623dc2a5e9c904925d6381974601ec9cbe2909fd5021e263", + "language": "R", + "lines": 504, + "truncated": false, + "block": 1, + "row": 10588 + }, + { + "path": "AnalysisPaper/SuppFigures/supp_part2.Rmd", + "sha256": "b08b1d7296929e81760e6279b328d2267d91e6f9988174dbc9c256affe7f76d0", + "language": "R", + "lines": 706, + "truncated": false, + "block": 1, + "row": 10601 + }, + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "R/CSIDE.R", + "sha256": "b434d876b5bad8fa07d2d6473f7b949d265ce856d0c534f7396ad295c0e02bb5", + "language": "R", + "lines": 748, + "truncated": false, + "block": 1, + "row": 10606 + }, + { + "path": "R/CSIDE_class.R", + "sha256": "bdf3ea7c2342668415bebae210a6a82c208751da1a07a94e8b68fb78cba0da2f", + "language": "R", + "lines": 153, + "truncated": false, + "block": 1, + "row": 10375 + }, + { + "path": "R/CSIDE_helper.R", + "sha256": "82e1e4b930dbbfe26b8cce99ecb49b861da7b45a2c6dfe46fe927a35805491b4", + "language": "R", + "lines": 223, + "truncated": false, + "block": 1, + "row": 10390 + }, + { + "path": "R/CSIDE_plots.R", + "sha256": "c7164583dc0cb4c6c32a69b49ea62608aa4448f82f6a84c87f17c7002bf2cbe0", + "language": "R", + "lines": 524, + "truncated": false, + "block": 1, + "row": 10575 + }, + { + "path": "R/CSIDE_population.R", + "sha256": "4a3c7b872d095b8d6ae67591a3f22a9ceaee6f4fe4f174213dee03bdba2e36a5", + "language": "R", + "lines": 206, + "truncated": false, + "block": 1, + "row": 10403 + }, + { + "path": "R/CSIDE_stats.R", + "sha256": "e27804ddbbaee86354c032905d79d4f3ce95ff81ed21f939d22385b59552e25a", + "language": "R", + "lines": 27, + "truncated": false, + "block": 1, + "row": 10021 + }, + { + "path": "R/CSIDE_utils.R", + "sha256": "0fd838d4c2097eb56b96d092082ee22e418918c891b74e33867013b7e98c8711", + "language": "R", + "lines": 467, + "truncated": false, + "block": 1, + "row": 10568 + }, + { + "path": "R/IRWLS.R", + "sha256": "e5a1687cc39e7a6dd512914133d058c891a7aea641baa19ac3a13b38a1670094", + "language": "R", + "lines": 106, + "truncated": false, + "block": 1, + "row": 10194 + }, + { + "path": "R/RCTD_helper.R", + "sha256": "550efaf30f1df94be2d8795e3bae5877ae959e19f469dbc905e18abba1e636cf", + "language": "R", + "lines": 235, + "truncated": false, + "block": 1, + "row": 10466 + }, + { + "path": "R/RCTDreplicates.R", + "sha256": "7715e5ad9a6b9b46ebf9f2140e97c73e10a72172ca1ebb9acf74be7ac97b4eb8", + "language": "R", + "lines": 308, + "truncated": false, + "block": 1, + "row": 10570 + }, + { + "path": "R/Reference.R", + "sha256": "81f69532600565404955bb19801c6c55d42aae68e27a0b788ba7024fe4c34807", + "language": "R", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10319 + }, + { + "path": "R/SpatialRNA.R", + "sha256": "7c5fe064159a2b28f57f2e174ad697bfa0ba53e56801fa9e647a321324955e45", + "language": "R", + "lines": 236, + "truncated": false, + "block": 1, + "row": 10461 + }, + { + "path": "R/classes.R", + "sha256": "e9279ff79cb3d44f43ac122e56d763c4b338d5a0fa316a6a9eb5a46f9db2b55f", + "language": "R", + "lines": 172, + "truncated": false, + "block": 1, + "row": 10359 + }, + { + "path": "R/platform_effect_normalization.R", + "sha256": "792129b755a3d549a40f9eafe461fa69ea99d1da9b0abaef9bbfcbbcb774e421", + "language": "R", + "lines": 109, + "truncated": false, + "block": 1, + "row": 10302 + }, + { + "path": "R/plotting.R", + "sha256": "6dadefedbfccc05cd33963941d4ca85be6ca56ffbbc4cd2dc1eefcae24489972", + "language": "R", + "lines": 449, + "truncated": false, + "block": 1, + "row": 10559 + }, + { + "path": "R/postProcessing.R", + "sha256": "0ee4a1350a25d6598dd5d7448b863c02dd9a6d2009f287188bb76950f2ef93c2", + "language": "R", + "lines": 137, + "truncated": false, + "block": 1, + "row": 10358 + }, + { + "path": "R/prob_model.R", + "sha256": "dfb0a9aaec66e4398f5cdb1075f21cc0a0a1ee6db14b9719cf048a74c0aa2e20", + "language": "R", + "lines": 209, + "truncated": false, + "block": 1, + "row": 10339 + }, + { + "path": "R/processRef.R", + "sha256": "3237305e2136f9b529777d2fe05136b4a2db9fefb093ff3fbb786f0cb93593b6", + "language": "R", + "lines": 59, + "truncated": false, + "block": 1, + "row": 10147 + }, + { + "path": "R/replintegrate.R", + "sha256": "53ee829241f6613a5529b1d6b5384cc2c219f1c5e4c2542f1a0203e3b9408b72", + "language": "R", + "lines": 59, + "truncated": false, + "block": 1, + "row": 10101 + }, + { + "path": "R/repliterate.R", + "sha256": "aa5e2ed8204cbf4d4b75823cb072f5ca5673d81e338bc97182844268b83d9746", + "language": "R", + "lines": 30, + "truncated": false, + "block": 1, + "row": 9992 + }, + { + "path": "R/runRCTD.R", + "sha256": "818e086dd1fc02ab19d52ca9143375228038af30d5f9715d7ea1dfbac2848f76", + "language": "R", + "lines": 204, + "truncated": false, + "block": 1, + "row": 10465 + }, + { + "path": "R/spacexr.R", + "sha256": "630e46cbb6c8915f4dd0e9234fa6d0ae2c5c35b9338c990e6911062625d7eff8", + "language": "R", + "lines": 165, + "truncated": false, + "block": 1, + "row": 10447 + }, + { + "path": "R/utils.R", + "sha256": "775e068720defd167d220013e6ba5f5e9f5f8e21867603d2c7c6861da31858a3", + "language": "R", + "lines": 131, + "truncated": false, + "block": 1, + "row": 10314 + }, + { + "path": "README.Rmd", + "sha256": "0332013420eb973bf1c525857a17cec3f935ec9b4bc6952a6d0fbe976833b333", + "language": "R", + "lines": 148, + "truncated": false, + "block": 1, + "row": 10497 + }, + { + "path": "README.md", + "sha256": "a3476273556ca4e7e532c8c059cadffb0ca77817dc5521b2a1398dbba32b020f", + "language": "Text", + "lines": 288, + "truncated": false, + "block": 1, + "row": 11982 + }, + { + "path": "documentation/README.Rmd", + "sha256": "e679f66d3a0eed138c63f2ba08c285cf6f4a6b203356e1213cd67160aac38e0c", + "language": "R", + "lines": 243, + "truncated": false, + "block": 1, + "row": 10551 + }, + { + "path": "vignettes/CSIDE_celltocell_interactions.Rmd", + "sha256": "8ae5640b349df1e00c55fb4634d2fd58bafab0741a8efe920efe7a3eaa2620ef", + "language": "R", + "lines": 155, + "truncated": false, + "block": 1, + "row": 10371 + }, + { + "path": "vignettes/CSIDE_pathology_interactions.Rmd", + "sha256": "af32061e57f8000f0f4302509a05f95dbb435aebd37cf57bd72c8c2999c30027", + "language": "R", + "lines": 154, + "truncated": false, + "block": 1, + "row": 10379 + }, + { + "path": "vignettes/CSIDE_two_regions.Rmd", + "sha256": "e51fb6b1de696a240eff732be1766ee918cc3276ce0f86f565232c9b09ca9172", + "language": "R", + "lines": 157, + "truncated": false, + "block": 1, + "row": 10376 + }, + { + "path": "vignettes/README.Rmd", + "sha256": "7765b1369435cbc44be7b3445469f6b95f37d054ae878c098497c104ff1640d0", + "language": "R", + "lines": 63, + "truncated": false, + "block": 1, + "row": 10239 + }, + { + "path": "vignettes/differential-expression.Rmd", + "sha256": "7a075d5866fc01d3e21ade0e1320458fddd5c50e05730d59a1bb5c5e6ac642b8", + "language": "R", + "lines": 143, + "truncated": false, + "block": 1, + "row": 10355 + }, + { + "path": "vignettes/merfish_nonparametric.Rmd", + "sha256": "9bb3401fe4614ad4211731799e79c8c9c3e1664e048812650d5ba2ad41ff21b6", + "language": "R", + "lines": 140, + "truncated": false, + "block": 1, + "row": 10367 + }, + { + "path": "vignettes/replicates.Rmd", + "sha256": "ebd44df9233be9916ed4a58ea27f90baca3d91e2d757f7a95efe6de669422d11", + "language": "R", + "lines": 188, + "truncated": false, + "block": 1, + "row": 10470 + }, + { + "path": "vignettes/spatial-transcriptomics.Rmd", + "sha256": "b92da990f1246477a6f8bb8b45f02c2425ac47adb764751f458b846caa75d26f", + "language": "R", + "lines": 183, + "truncated": false, + "block": 1, + "row": 10448 + }, + { + "path": "vignettes/visium_CSIDE_celltocell_interactions.Rmd", + "sha256": "280c6281fe69fcb11ae02d1993eb09eb72fa1c3c842bf549b98e1bef9a0d2c40", + "language": "R", + "lines": 86, + "truncated": false, + "block": 1, + "row": 10216 + }, + { + "path": "vignettes/visium_full_regions.Rmd", + "sha256": "78d2fc36e5fb68ea7cd220d140bb1dbd3ff99f1289372965eb8ee2ec31eed07b", + "language": "R", + "lines": 178, + "truncated": false, + "block": 1, + "row": 10410 + }, + { + "path": "vignettes/visium_multi.Rmd", + "sha256": "96930c9de093d8f8544a54123d727fca27d0b47ec0d1820044a32a9f54682f27", + "language": "R", + "lines": 91, + "truncated": false, + "block": 1, + "row": 10224 + } + ] +} \ No newline at end of file diff --git a/manifests/35/github.com__francoisdernoncourt__mapping_recurrent_inhibition.json b/manifests/35/github.com__francoisdernoncourt__mapping_recurrent_inhibition.json new file mode 100644 index 0000000000000000000000000000000000000000..90e498082d94d8d1353b0919eea926b1bfa2efc1 --- /dev/null +++ b/manifests/35/github.com__francoisdernoncourt__mapping_recurrent_inhibition.json @@ -0,0 +1,147 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/francoisdernoncourt/mapping_recurrent_inhibition", + "url": "https://github.com/FrancoisDernoncourt/Mapping_Recurrent_Inhibition", + "host": "github.com", + "commit": "31e52ca73d83a61dd2b5e1604fc26cf42aa6a589", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Experimental_data_processing/organize_experimental_data.ipynb", + "sha256": "5175e9f70e7c3349034b90416830c63da5141ec6869d136e90cd42a5d0644437", + "language": "Jupyter", + "lines": 532, + "truncated": false, + "block": 1, + "row": 2016 + }, + { + "path": "Experimental_data_processing/process_experimental_data.ipynb", + "sha256": "ede3950370f9347ec8fa956248b9c160011ef1ee22832b853473a1d026f08c04", + "language": "Jupyter", + "lines": 3839, + "truncated": true, + "block": 1, + "row": 2066 + }, + { + "path": "LICENSE", + "sha256": "517c84c5f8d80a784eb0374c63974169185dbe367cf1853f0684eea3891f78d1", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2158 + }, + { + "path": "README.md", + "sha256": "566febac0cae158c9db6c9a2b96b060fa0cd30bb6044869a659dd6381e85c8f2", + "language": "Text", + "lines": 219, + "truncated": false, + "block": 1, + "row": 11980 + }, + { + "path": "R_scripts_figures_results/Plotting_experimental_data_features_FIG5.Rmd", + "sha256": "11c5610640f45ddb2c301b0cf82b30283b9239553d00c9c7b8fe179bec00f079", + "language": "R", + "lines": 640, + "truncated": false, + "block": 1, + "row": 10552 + }, + { + "path": "R_scripts_figures_results/Proxy_features_VS_ground_truth_plots_FIG2.Rmd", + "sha256": "a07bea9bb6700beaa57a699858af396164df4ba026c534e5afb30daff48d75bc", + "language": "R", + "lines": 702, + "truncated": false, + "block": 1, + "row": 10566 + }, + { + "path": "Simulation_based_inference/SBI_main_script.ipynb", + "sha256": "19cdc7bf26b6653dae5ae8d157e0120380675e6aead7be9f58b27c102c691f4e", + "language": "Jupyter", + "lines": 4590, + "truncated": true, + "block": 1, + "row": 2067 + }, + { + "path": "Simulation_based_inference/SBI_posteriors_figures.ipynb", + "sha256": "884967e6256d5a185bb14949e01be7ac058bb85042d154c4d3f5e0b49808cfc5", + "language": "Jupyter", + "lines": 1530, + "truncated": false, + "block": 1, + "row": 2050 + }, + { + "path": "Simulation_based_inference/posterior_prediction_simulated_obs_VS_experimental_obs.ipynb", + "sha256": "3054158799aa7a1df1addae92e59744500c664c275170e30637993f481c4743c", + "language": "Jupyter", + "lines": 3384, + "truncated": false, + "block": 1, + "row": 2061 + }, + { + "path": "Simulation_parameters/Open_params_pkl_file.ipynb", + "sha256": "ce12d933336dade5dd3a5e01c952db2b2f1c452cb149279e30e0558642247643", + "language": "Jupyter", + "lines": 34, + "truncated": false, + "block": 1, + "row": 1687 + }, + { + "path": "analyze_batch.ipynb", + "sha256": "3363833d7c693bf1ec9e4538dbe586805293951537e97acf9a01c37b55bb9f98", + "language": "Jupyter", + "lines": 303, + "truncated": false, + "block": 1, + "row": 1968 + }, + { + "path": "analyzer.py", + "sha256": "752ab4b6b3417b35f69fc8fa85d41c38d205f8a1b0b6e6dcfe13418ad47dc1cc", + "language": "Python", + "lines": 2249, + "truncated": false, + "block": 1, + "row": 9867 + }, + { + "path": "simulate_batch.ipynb", + "sha256": "d03de895f1040ff038332f65634bd4656720eb4aedeffaad90154f7a9e9560b0", + "language": "Jupyter", + "lines": 730, + "truncated": false, + "block": 1, + "row": 2041 + }, + { + "path": "simulation_batch_general_analysis.ipynb", + "sha256": "8c2bd48b84245cfe8fa32cf77e89631388e9772f651f11bee087c82a5d6df308", + "language": "Jupyter", + "lines": 697, + "truncated": false, + "block": 1, + "row": 2035 + }, + { + "path": "simulator.py", + "sha256": "96f193bd74b5dfd4e917ad77df3d99431d6cd6d5d2c381a708b7912ddb88f051", + "language": "Python", + "lines": 2008, + "truncated": false, + "block": 1, + "row": 9864 + } + ] +} \ No newline at end of file diff --git a/manifests/35/github.com__surabhilata__eclipse.json b/manifests/35/github.com__surabhilata__eclipse.json new file mode 100644 index 0000000000000000000000000000000000000000..3f71cce1f8591f305e50fdca8b025411ff890cdf --- /dev/null +++ b/manifests/35/github.com__surabhilata__eclipse.json @@ -0,0 +1,66 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/surabhilata/eclipse", + "url": "https://github.com/surabhilata/ECLIPSE", + "host": "github.com", + "commit": "fcf1147194dcde5ea3846d637670dd0a843a7915", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "ECLIPSE_DPPS_score.ipynb", + "sha256": "8b78e464815fa5248be3766d5a58e7c564e7e875162a529961416fbf110520f3", + "language": "Jupyter", + "lines": 880, + "truncated": false, + "block": 1, + "row": 2042 + }, + { + "path": "ECLIPSE_PartI.ipynb", + "sha256": "62036639bbc328bdbcd0a859f1ee5310a9774a5db0cc179003e25b7e9e8a2ead", + "language": "Jupyter", + "lines": 713, + "truncated": false, + "block": 1, + "row": 2031 + }, + { + "path": "ECLIPSE_PartII.ipynb", + "sha256": "fc3a551e1e6e236b559899b064327e72295b119ab5a5e7ac401105c61d6dfe79", + "language": "Jupyter", + "lines": 218, + "truncated": false, + "block": 1, + "row": 1888 + }, + { + "path": "ECLIPSE_complete.ipynb", + "sha256": "110682e6a3f61ee3d1385b2648f6911eb0259b98822f8ab75a4d68cc8ec05068", + "language": "Jupyter", + "lines": 1698, + "truncated": false, + "block": 1, + "row": 2052 + }, + { + "path": "LICENSE", + "sha256": "f741137494b9df47367742da5d45c480b89451ee0bc28e9a5160be1746ed5d96", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2113 + }, + { + "path": "README.md", + "sha256": "48810a205857a3c8abb11516536513171f2ea821e7f6297cb6b0b936a33c01fa", + "language": "Text", + "lines": 446, + "truncated": false, + "block": 1, + "row": 11999 + } + ] +} \ No newline at end of file diff --git a/manifests/36/github.com__noamteyssier__crispr_screen.json b/manifests/36/github.com__noamteyssier__crispr_screen.json new file mode 100644 index 0000000000000000000000000000000000000000..f900e24cb0e939259bb0a5cdaf9fe387be9c1ba3 --- /dev/null +++ b/manifests/36/github.com__noamteyssier__crispr_screen.json @@ -0,0 +1,354 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/noamteyssier/crispr_screen", + "url": "https://github.com/noamteyssier/crispr_screen", + "host": "github.com", + "commit": "82e282c725dc3883df13e9618b1b00a739815f4b", + "license": "MIT", + "license_confirmed_by": "license file LICENSE.md", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.md", + "sha256": "81c17a78bd43f9df592d00dcac53218c936bbcd44a2b130a6108193e93eeb5fe", + "language": "License", + "lines": 7, + "truncated": false, + "block": 1, + "row": 2074 + }, + { + "path": "README.md", + "sha256": "d3a82fa5cdc2f6b729fe5f2000cf592c55eaae7e9399baecaa78de0a246491f8", + "language": "Text", + "lines": 112, + "truncated": false, + "block": 1, + "row": 11885 + }, + { + "path": "doc/theme/book.js", + "sha256": "51c8bb0d83fb098b48f050fb3fe35db8c6a76b9422bba26987e2b7368cd8c828", + "language": "JavaScript", + "lines": 679, + "truncated": false, + "block": 1, + "row": 1505 + }, + { + "path": "doc/theme/highlight.js", + "sha256": "5a2b5dadd60831dd1f82220223e2ab18e627061912cc89b5c450ab2c8f26ff90", + "language": "JavaScript", + "lines": 6, + "truncated": false, + "block": 1, + "row": 1548 + }, + { + "path": "src/aggregation/compute_aggregation.rs", + "sha256": "0c49075e6bb82bed03ad1800d2df6e7bdd4985751b8c98adfa95168c71132ab6", + "language": "Rust", + "lines": 381, + "truncated": false, + "block": 1, + "row": 10975 + }, + { + "path": "src/aggregation/mod.rs", + "sha256": "7e5f8e3ef93a482eadbd984064ff3fa47ec5c5d5b3d19ed48c80db824384b587", + "language": "Rust", + "lines": 138, + "truncated": false, + "block": 1, + "row": 10784 + }, + { + "path": "src/aggregation/results.rs", + "sha256": "53f33b23384dfcff93da88044cdd8b09c21e33f3a866233cabd38fca92695c87", + "language": "Rust", + "lines": 184, + "truncated": false, + "block": 1, + "row": 10858 + }, + { + "path": "src/aggregation/utils.rs", + "sha256": "f8bfe448732a1efa0b0ccf0096d3a7c20a7ba3af738d4e188519bf9072d975f4", + "language": "Rust", + "lines": 217, + "truncated": false, + "block": 1, + "row": 10913 + }, + { + "path": "src/cli.rs", + "sha256": "8afa56fa01e3923505348c8fb8cdc2feed0595b0d8d86944a68b102defb5da22", + "language": "Rust", + "lines": 308, + "truncated": false, + "block": 1, + "row": 10935 + }, + { + "path": "src/differential_expression.rs", + "sha256": "21e8104a850480f5ae81e92b4f025aca791fec372f7f93b59002d673b3735e6f", + "language": "Rust", + "lines": 102, + "truncated": false, + "block": 1, + "row": 10777 + }, + { + "path": "src/enrich/enrichment_testing.rs", + "sha256": "7e1bf162fa04275d36fbfd184841b255543bd88d57881477551a3f800532b9ce", + "language": "Rust", + "lines": 342, + "truncated": false, + "block": 1, + "row": 10976 + }, + { + "path": "src/enrich/mod.rs", + "sha256": "956888e7550d6d90263426cd3b0b2560dcc7fb5546a099a048cbaa82ae5f0854", + "language": "Rust", + "lines": 22, + "truncated": false, + "block": 1, + "row": 10669 + }, + { + "path": "src/enrich/results.rs", + "sha256": "a0ab47f6106eca76801ba434fe9cc49556da10fb14f586d25c2ae1489bc6e754", + "language": "Rust", + "lines": 183, + "truncated": false, + "block": 1, + "row": 10869 + }, + { + "path": "src/io/gene_frame.rs", + "sha256": "4b81061aec24a3edbe95779a901ac360cacd5da7f220127988e1eb351dc23d35", + "language": "Rust", + "lines": 113, + "truncated": false, + "block": 1, + "row": 10795 + }, + { + "path": "src/io/mod.rs", + "sha256": "8aba72216a9c6217be1f4f601af5b9a549ccac9be8c36eae5057e2fc2b6b6534", + "language": "Rust", + "lines": 12, + "truncated": false, + "block": 1, + "row": 10646 + }, + { + "path": "src/io/screenviz.rs", + "sha256": "f0ab63aa22ede3728cedf1cb8b6ec67940baab556a012f2223f4973b94a4d7f2", + "language": "Rust", + "lines": 350, + "truncated": false, + "block": 1, + "row": 10981 + }, + { + "path": "src/io/sgrna_frame.rs", + "sha256": "0c5a7c6df039b0036df3101488ae1f9a46ec6a1160d87b8928be070a134a2b5a", + "language": "Rust", + "lines": 45, + "truncated": false, + "block": 1, + "row": 10702 + }, + { + "path": "src/io/utils.rs", + "sha256": "64131b5ef705eebd219673e3e7409cfec126b7e13037688a5d438d131ebdbb96", + "language": "Rust", + "lines": 201, + "truncated": false, + "block": 1, + "row": 10875 + }, + { + "path": "src/main.rs", + "sha256": "f05587d203b1fae9ab4da1f74bdf2df5621b1e29f2c66c44edae33ef5411ea49", + "language": "Rust", + "lines": 304, + "truncated": false, + "block": 1, + "row": 10932 + }, + { + "path": "src/model/logged_ols.rs", + "sha256": "20d55e77122e88b8a12cc5afd8b304ec9f97e42ba410b9206d3636d9b2829ced", + "language": "Rust", + "lines": 199, + "truncated": false, + "block": 1, + "row": 10878 + }, + { + "path": "src/model/math.rs", + "sha256": "aad832c21248350c8b59f9eadb10c23915e27bd4787afddad8b80ea45f243a22", + "language": "Rust", + "lines": 44, + "truncated": false, + "block": 1, + "row": 10676 + }, + { + "path": "src/model/mod.rs", + "sha256": "817a8c15a71202299e4f469fa4307b4311d5495a98fc32775d8d2d13b053e444", + "language": "Rust", + "lines": 28, + "truncated": false, + "block": 1, + "row": 10653 + }, + { + "path": "src/model/model_mean_variance.rs", + "sha256": "22aa54626a9254e69d8c1bc1cc56aee484bed3a0555c8cd60f7b54a83c239bba", + "language": "Rust", + "lines": 27, + "truncated": false, + "block": 1, + "row": 10672 + }, + { + "path": "src/model/ols.rs", + "sha256": "4022456cb8b0e43964a4b853cf092c798e691988f9e95b4818644d9c8f5df7fc", + "language": "Rust", + "lines": 106, + "truncated": false, + "block": 1, + "row": 10770 + }, + { + "path": "src/model/sqmean.rs", + "sha256": "416b92de219bbcfbfada3ef7ce1557ce8ba94bead51385e90ecae6c531483504", + "language": "Rust", + "lines": 28, + "truncated": false, + "block": 1, + "row": 10661 + }, + { + "path": "src/model/wols.rs", + "sha256": "844b2bf42ffbd292ce030ed665e17cdb79d6f854b35a7d05a22a5452b6f1820d", + "language": "Rust", + "lines": 102, + "truncated": false, + "block": 1, + "row": 10765 + }, + { + "path": "src/norm/median_ratio_norm.rs", + "sha256": "c26f9e9871e7f90ce146e58f3314b2a5e82042ecffd953b1cc86f5b246c1e244", + "language": "Rust", + "lines": 83, + "truncated": false, + "block": 1, + "row": 10745 + }, + { + "path": "src/norm/mod.rs", + "sha256": "e05afa7970c6b52f69ec19d3416a7703c03366014c36af52ec2a435b24dfe59d", + "language": "Rust", + "lines": 8, + "truncated": false, + "block": 1, + "row": 10637 + }, + { + "path": "src/norm/normalize_counts.rs", + "sha256": "9fd607330acc5e732602cf8e631b0757765d16000c7d3615c2153dc6be71f159", + "language": "Rust", + "lines": 34, + "truncated": false, + "block": 1, + "row": 10675 + }, + { + "path": "src/norm/total_norm.rs", + "sha256": "b4a7962bd03c35418a959351eca6d2a63fe47334898690149a5b5bab423522d5", + "language": "Rust", + "lines": 43, + "truncated": false, + "block": 1, + "row": 10697 + }, + { + "path": "src/resample.rs", + "sha256": "6532c13d2f0160e06ba0029df7396136493a41097641d16a18c6dc8a027893f4", + "language": "Rust", + "lines": 136, + "truncated": false, + "block": 1, + "row": 10825 + }, + { + "path": "src/run_aggregation.rs", + "sha256": "89ef8dd0a632fbb164bff705f22c2050ca884d7ea9e5c64a5c231ffffc9d01b6", + "language": "Rust", + "lines": 64, + "truncated": false, + "block": 1, + "row": 10709 + }, + { + "path": "src/utils/agg.rs", + "sha256": "496ad8ccae7c092b5b96eed3246c8b7192332e5768befdf6618af914dd5187b6", + "language": "Rust", + "lines": 82, + "truncated": false, + "block": 1, + "row": 10737 + }, + { + "path": "src/utils/config.rs", + "sha256": "8384442cf89eec665ff8fc9bbc17d220a5a6eb39dd0d6f1256b42f59dc033d34", + "language": "Rust", + "lines": 108, + "truncated": false, + "block": 1, + "row": 10767 + }, + { + "path": "src/utils/filter.rs", + "sha256": "440d0530a8775dacdd3c2ac039f9fe58887406aeffc59eacf060a46c0ad6edc2", + "language": "Rust", + "lines": 134, + "truncated": false, + "block": 1, + "row": 10820 + }, + { + "path": "src/utils/logging.rs", + "sha256": "0c2df63b841d1bd0d49b2c986cf6f8c3ddb83d7c54fa23d50dad9f2ea4dc191c", + "language": "Rust", + "lines": 364, + "truncated": false, + "block": 1, + "row": 10974 + }, + { + "path": "src/utils/math.rs", + "sha256": "d63200f2950e3cf8e148489f38d402f2776acba69dda45f2d9f3b455f15c16b4", + "language": "Rust", + "lines": 103, + "truncated": false, + "block": 1, + "row": 10781 + }, + { + "path": "src/utils/mod.rs", + "sha256": "784a15102d66049027bcdbdfffc5fc0fb91bb80676f0ebb7369190065621c8eb", + "language": "Rust", + "lines": 19, + "truncated": false, + "block": 1, + "row": 10642 + } + ] +} \ No newline at end of file diff --git a/manifests/37/github.com__armaan-raina__estrous-phase-classification.json b/manifests/37/github.com__armaan-raina__estrous-phase-classification.json new file mode 100644 index 0000000000000000000000000000000000000000..3db6b58cd3dcc07b0e2ec27baefb2d9e0bcecf24 --- /dev/null +++ b/manifests/37/github.com__armaan-raina__estrous-phase-classification.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/armaan-raina/estrous-phase-classification", + "url": "https://github.com/Armaan-Raina/Estrous-Phase-Classification", + "host": "github.com", + "commit": "8495b02c0cd77faeb25c2218dff6c0b2a9311508", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Estrous_Classification.ipynb", + "sha256": "ff13ab2261a4db6521246e22910d7670c627b2484ae356f79e6325c6f278438e", + "language": "Jupyter", + "lines": 2588, + "truncated": false, + "block": 1, + "row": 2056 + }, + { + "path": "LICENSE", + "sha256": "c4b60652112de6066015e54933538ff3e1bb61a01e497967d67136be6a7adc9f", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2120 + }, + { + "path": "README.md", + "sha256": "846153363a9b29ebb62062a1ce2ee12440d9f16ff8409cb989be403280a623eb", + "language": "Text", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11810 + } + ] +} \ No newline at end of file diff --git a/manifests/37/zenodo__19731513.json b/manifests/37/zenodo__19731513.json new file mode 100644 index 0000000000000000000000000000000000000000..0b8c8c7b15f06aa0052af3bff8bb4c3a98ab64e1 --- /dev/null +++ b/manifests/37/zenodo__19731513.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:19731513", + "url": "https://doi.org/10.5281/zenodo.19731513", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.txt", + "sha256": "1150943243fa902b523919b8a5c57c78f423da8e99d393d91a6038851b70b7aa", + "language": "Text", + "lines": 78, + "truncated": false, + "block": 1, + "row": 11882 + }, + { + "path": "visualize_data.m", + "sha256": "0fe5265d830c639971d5637244431cba80017c3c92bcb66b7cf82568c75970c6", + "language": "MATLAB", + "lines": 135, + "truncated": false, + "block": 1, + "row": 3550 + } + ] +} \ No newline at end of file diff --git a/manifests/39/github.com__harveylab__acquisition2p_class.json b/manifests/39/github.com__harveylab__acquisition2p_class.json new file mode 100644 index 0000000000000000000000000000000000000000..4bef60628868fd4d734b65d22c5781da7c4f024c --- /dev/null +++ b/manifests/39/github.com__harveylab__acquisition2p_class.json @@ -0,0 +1,1308 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/harveylab/acquisition2p_class", + "url": "https://github.com/HarveyLab/Acquisition2P_class", + "host": "github.com", + "commit": "a366a2af6741a8e552b3ce10a32dd7134ae78dbd", + "license": "MIT", + "license_confirmed_by": "license file LICENSE.txt", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.txt", + "sha256": "675de099568df49036497b583a271491c01a35a150a925956f0e413dca858b9e", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1140 + }, + { + "path": "README.md", + "sha256": "1c74ec6d8556c0d5ed2f57b5664a5d448d8dfd0cfae88e5ee2f0f17f1ee73ca4", + "language": "Text", + "lines": 16, + "truncated": false, + "block": 2, + "row": 2590 + }, + { + "path": "Using the Acquisition2P Class.m", + "sha256": "bfa6541fa72feb5e8c55b6af2db3cc02d6c9f4c3e30e3f125a80b73c7178025c", + "language": "MATLAB", + "lines": 251, + "truncated": false, + "block": 2, + "row": 1544 + }, + { + "path": "Using the ROI selection tool.m", + "sha256": "27538e655f0214b5353d0017645f480f0bea5e1dcbad9c435fa4fcbadc1f43d2", + "language": "MATLAB", + "lines": 210, + "truncated": false, + "block": 2, + "row": 1545 + }, + { + "path": "classes/@Acquisition2P/Acquisition2P.m", + "sha256": "033c2901e2c0b571026a5fe8a5a44020ad39dbb800b6201bf999a37f51976a5c", + "language": "MATLAB", + "lines": 128, + "truncated": false, + "block": 2, + "row": 1471 + }, + { + "path": "classes/@Acquisition2P/addMovie.m", + "sha256": "c624f1b453a353286402c91ac980bf809c0c46bfe0992b4e36d76e71940ba6de", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 2, + "row": 1215 + }, + { + "path": "classes/@Acquisition2P/avgMov.m", + "sha256": "3de2295b7db06e921033103fc94237df165bb0a202c24b3b5b7f57138d310368", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 2, + "row": 1331 + }, + { + "path": "classes/@Acquisition2P/calcPxCov.m", + "sha256": "330049ed9d4994d9160ee9225a3d3c63db7a74461ebab2627081c450d062a7ac", + "language": "MATLAB", + "lines": 111, + "truncated": false, + "block": 2, + "row": 1424 + }, + { + "path": "classes/@Acquisition2P/deconvNmf.m", + "sha256": "290f605c340ab9af4d625e88a8593fa953fd5c0e9b487f45f1e6a456f7ece98f", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 2, + "row": 1253 + }, + { + "path": "classes/@Acquisition2P/extractROIsBin.m", + "sha256": "fb1fbb535279aa15346e731b1fa606f87c2e26fff49f04371c6c95112736af5c", + "language": "MATLAB", + "lines": 82, + "truncated": false, + "block": 2, + "row": 1380 + }, + { + "path": "classes/@Acquisition2P/extractROIsTIFF.m", + "sha256": "14d68bc980484c7546f3502cbec8168b13ed7837937f97ae96126adc9da5b877", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 2, + "row": 1389 + }, + { + "path": "classes/@Acquisition2P/extractSources.m", + "sha256": "32c1ddc595d0532f52774ec7dd4a9a476aae2a239bbad82db91d154666708208", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 2, + "row": 1276 + }, + { + "path": "classes/@Acquisition2P/indexMovie.m", + "sha256": "404758469f9f9a7774cb2394252c66cc316be926633775b4d0eca0fc412a1cea", + "language": "MATLAB", + "lines": 151, + "truncated": false, + "block": 2, + "row": 1454 + }, + { + "path": "classes/@Acquisition2P/mat2binInd.m", + "sha256": "38e67d170cf7aef85aed199168df602608472e15f1a6e704d05f666ef5b00837", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 2, + "row": 1199 + }, + { + "path": "classes/@Acquisition2P/meanRef.m", + "sha256": "74beb02a11fd09c1d0140605cbf4f303ac2fe02ddf4d495cff8b547193a9c1f9", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 2, + "row": 1306 + }, + { + "path": "classes/@Acquisition2P/motionCorrect.m", + "sha256": "763bad367c55e1278ea0581fc1a684de76054d5dea309dadf11de9d7e5f1fa3d", + "language": "MATLAB", + "lines": 145, + "truncated": false, + "block": 2, + "row": 1460 + }, + { + "path": "classes/@Acquisition2P/newDir.m", + "sha256": "8a30f24b6ec6dd19af81f6a3eb544ae706d222ea79cf4cac780cfb93aef12a71", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 2, + "row": 1411 + }, + { + "path": "classes/@Acquisition2P/save.m", + "sha256": "1ac02d12bedc2abfd0e8df92d64b5e70d439842a600c57a03e6b908a59833017", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 2, + "row": 1228 + }, + { + "path": "classes/@Acquisition2P/selectROIs.m", + "sha256": "7f89b73be772fae7a7c01613e37cc80e6646f320ed2f6576da858b87f34c8de8", + "language": "MATLAB", + "lines": 66, + "truncated": false, + "block": 2, + "row": 1367 + }, + { + "path": "classes/@acq2pJobProcessor/acq2pJobProcessor.m", + "sha256": "03b675256172e90c1256079b94a607a9df9ea3e1d901db4670b5073a60b3e0c2", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 2, + "row": 1258 + }, + { + "path": "classes/@acq2pJobProcessor/loadNextAcq.m", + "sha256": "e317ef75f6fa85ac8bda2aa0d632f94e65ed7e18421025afabb2c122be4b0bda", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 2, + "row": 1279 + }, + { + "path": "classes/@acq2pJobProcessor/log.m", + "sha256": "a5fa919a5e5eb80b6577ce4e41572ada5ce36b2cfb699f108019a28394bfe132", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 2, + "row": 1262 + }, + { + "path": "classes/@acq2pJobProcessor/processCurrentAcq.m", + "sha256": "5632476bd2a5be90fe3deae73a01d05de4ad1baf552c6e391c0d6e6ee5b96338", + "language": "MATLAB", + "lines": 201, + "truncated": false, + "block": 2, + "row": 1483 + }, + { + "path": "classes/@acq2pJobProcessor/readme.m", + "sha256": "a1bfeb7f8297c2229d7196f78a76937e2a64e31e5f17531f9fc977a25f6069a3", + "language": "MATLAB", + "lines": 95, + "truncated": false, + "block": 2, + "row": 1421 + }, + { + "path": "classes/@acq2pJobProcessor/run.m", + "sha256": "7d80890c32215af60adf38aa30908c4950f39c98da2d82fdf72a006c1d15ba12", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 2, + "row": 1216 + }, + { + "path": "classes/@acq2pJobProcessor/saveCurrentAcq.m", + "sha256": "ed6ef20ba005cfaa026850295a2cfb30b1061d2301357d38d89552bdbd638815", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 2, + "row": 1218 + }, + { + "path": "classes/@acq2pJobProcessor/stop.m", + "sha256": "22c436353c525cf7740578397d9bc3bcbf44d879d305757ec501bdf8f5fb6353", + "language": "MATLAB", + "lines": 4, + "truncated": false, + "block": 2, + "row": 1158 + }, + { + "path": "classes/@selectRoisGui/addOverlayTrace.m", + "sha256": "5a8b24162a35235edf80e6b969d69d2fd1d6fe8d674c724680446c74794c49c5", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 2, + "row": 1250 + }, + { + "path": "classes/@selectRoisGui/calcClusterProps.m", + "sha256": "0e34176f0e7e0c04d5d0f5956221a387f22207972d32b1446f8bb09216abc6d0", + "language": "MATLAB", + "lines": 87, + "truncated": false, + "block": 2, + "row": 1369 + }, + { + "path": "classes/@selectRoisGui/calcRoi.m", + "sha256": "cb4b2c2ba11a221febd0bc0953cae46016cf2d7bace5853f8d687f881c857549", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 2, + "row": 1241 + }, + { + "path": "classes/@selectRoisGui/cbChangeRoiLabel.m", + "sha256": "8616f32f3c9c672ae13aea11293e3b406cb24ded53c0eac14c9de9fb2fed1d70", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 2, + "row": 1178 + }, + { + "path": "classes/@selectRoisGui/cbCloseRequestMain.m", + "sha256": "29a7aa6999046944bbf50441b37989ccc5ccf73c3dd389f139745e84221b6576", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 2, + "row": 1184 + }, + { + "path": "classes/@selectRoisGui/cbDeleteRoi.m", + "sha256": "9ff17f5691691c10e95fa50b5f748abd67c9270ceca9951ccbf40f64350fadbd", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 2, + "row": 1189 + }, + { + "path": "classes/@selectRoisGui/cbKeypress.m", + "sha256": "309241dac6b5773e6c0909f4e6e14ec83fad9a16aa0346f87a5f3175ab7b6e9b", + "language": "MATLAB", + "lines": 129, + "truncated": false, + "block": 2, + "row": 1457 + }, + { + "path": "classes/@selectRoisGui/cbKeypressTraceWin.m", + "sha256": "c2567c57b20bb1d400152b47765ed11e5bc5e667ce7b76bb4f0a67493cef5361", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 2, + "row": 1204 + }, + { + "path": "classes/@selectRoisGui/cbMouseclick.m", + "sha256": "62efd01c3b22f37269dddfc656889e3575d731be5183c799cba5cc3b981828a2", + "language": "MATLAB", + "lines": 148, + "truncated": false, + "block": 2, + "row": 1446 + }, + { + "path": "classes/@selectRoisGui/cbMousemove.m", + "sha256": "380e742b5b49e707163b151e4d30cc14f065667388bee9112a0efca1e823cec6", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 2, + "row": 1267 + }, + { + "path": "classes/@selectRoisGui/cbPassThroughKeypressToMain.m", + "sha256": "40a3bc84813bff161c2378777c994ed98866d688a1b2fbfcf32639a4df353725", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 2, + "row": 1167 + }, + { + "path": "classes/@selectRoisGui/cbScrollwheel.m", + "sha256": "0ae12ef640f06adae89f7ac993402f9a6d940e3778f57c65ed133c3204cc1072", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 2, + "row": 1307 + }, + { + "path": "classes/@selectRoisGui/cbShowROITrace.m", + "sha256": "5c206241df6ce955e60a0bcf32f41b05343d7ff43b73f39295ca087fda6f4554", + "language": "MATLAB", + "lines": 9, + "truncated": false, + "block": 2, + "row": 1162 + }, + { + "path": "classes/@selectRoisGui/cbSliderContrast.m", + "sha256": "67b204431f33989f0058642406bffbea557c967ee7548d6276f07fd1a5aed963", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 2, + "row": 1164 + }, + { + "path": "classes/@selectRoisGui/createGui.m", + "sha256": "489c52baa5eff0339525b0320f60965916b4627a1926e98369b71f1e7d49b2be", + "language": "MATLAB", + "lines": 244, + "truncated": false, + "block": 2, + "row": 1526 + }, + { + "path": "classes/@selectRoisGui/displayRoi.m", + "sha256": "770c4a208386ee64319556f911bd8f40e7cb4bebd8ef65865336d125bbcc8684", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 2, + "row": 1376 + }, + { + "path": "classes/@selectRoisGui/doAllClusterTraces.m", + "sha256": "b42cbbdbb16801a9a3889ab21d1f914597f5b03b327ad62633a932c3fb4e5f4a", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 2, + "row": 1368 + }, + { + "path": "classes/@selectRoisGui/doManualROI.m", + "sha256": "742131c77a631e88ed8194e60ffcc85ffec5f74fbd8c6778f3d5b8358aee1d69", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 2, + "row": 1309 + }, + { + "path": "classes/@selectRoisGui/doSubTracePlot.m", + "sha256": "8dc13d32ae20729a9043665d54e4df0ac6e7256a119f3a593eac75b78bfd156a", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 2, + "row": 1263 + }, + { + "path": "classes/@selectRoisGui/findEdges.m", + "sha256": "9800ed652fd8671d823ef0134e47b2a321c6fc961c4b245f6b69f04aa9c2db75", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 2, + "row": 1181 + }, + { + "path": "classes/@selectRoisGui/getClusters.m", + "sha256": "3a87df23020e62df2ffe4979d5808804cdff8362c2ced380c4e33785b4d1fab5", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 2, + "row": 1265 + }, + { + "path": "classes/@selectRoisGui/getCovData.m", + "sha256": "1413b220f7bfd7ec9867038278f6b07d20e1c3cd43a7f8c7ead072faf6fc1218", + "language": "MATLAB", + "lines": 65, + "truncated": false, + "block": 2, + "row": 1333 + }, + { + "path": "classes/@selectRoisGui/mergeCurrentROI.m", + "sha256": "8f30d4c70c3317da3de074076c674245426637aec101a8afc87cb6255544691d", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 2, + "row": 1233 + }, + { + "path": "classes/@selectRoisGui/nh2movInd.m", + "sha256": "1e0a101a24b3cdcca6134e537a9034f677fd0b658ee5a6d43d56e4e5b662a6ce", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 2, + "row": 1230 + }, + { + "path": "classes/@selectRoisGui/plotNeuropilTraces.m", + "sha256": "fd0fde9ccbefda19a0a6ee439bf47ad1d120853f2e3663f4ea562bf1ac61c12c", + "language": "MATLAB", + "lines": 80, + "truncated": false, + "block": 2, + "row": 1404 + }, + { + "path": "classes/@selectRoisGui/plotSubScatterFit.m", + "sha256": "f6c882d4a9bac4d8f9aaf750aa5bf5c3f0047fb9e24f58247b9935efca464216", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 2, + "row": 1214 + }, + { + "path": "classes/@selectRoisGui/saveNewROI.m", + "sha256": "755d7c8c6c41bafb75cd5b399bcd2e19b9e15878a0382d78536bcb1aae4e0660", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 2, + "row": 1324 + }, + { + "path": "classes/@selectRoisGui/selectRoisGui.m", + "sha256": "ff607c35d6ece50a0bbc0b43f5eb151f80425d55ecef637362b7350c192621b0", + "language": "MATLAB", + "lines": 83, + "truncated": false, + "block": 2, + "row": 1398 + }, + { + "path": "classes/@selectRoisGui/splitCurrentROI.m", + "sha256": "63243e27677d46a78f37f72d63d5e2580fba493c0225f38f13be777b10220d94", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 2, + "row": 1254 + }, + { + "path": "classes/@selectRoisGui/subCoefScrollWheel.m", + "sha256": "228226c4963ebb33d2405cfcf180e11c7512249c4c29ba44060fc8ecdb5a1026", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 2, + "row": 1217 + }, + { + "path": "classes/@selectRoisGui/updateOverviewDisplay.m", + "sha256": "ccf87cf83756d114250b603f4366edf00f89617382a3c5662889fd65cf324a83", + "language": "MATLAB", + "lines": 123, + "truncated": false, + "block": 2, + "row": 1426 + }, + { + "path": "common/Motion Correction Files/correctLineShift.m", + "sha256": "00e50e2c40a374aa4bd720345f0ea92ef8cc432f5eddee88d2637825ae6477c1", + "language": "MATLAB", + "lines": 78, + "truncated": false, + "block": 2, + "row": 1374 + }, + { + "path": "common/Motion Correction Files/correct_translation_singleframe.m", + "sha256": "930099a356b48a0d4eb857abf8df66e140e2c41a423dbee4044c907676665eb1", + "language": "MATLAB", + "lines": 209, + "truncated": false, + "block": 2, + "row": 1507 + }, + { + "path": "common/Motion Correction Files/lKFast_affineSlow_memMap.m", + "sha256": "789b9adead96ca3f6d06251d9d62cbfe1941338d9c493a12c9b5e4a0977d9c2d", + "language": "MATLAB", + "lines": 191, + "truncated": false, + "block": 2, + "row": 1524 + }, + { + "path": "common/Motion Correction Files/lucas-kanade/alignFullframeCircshift.m", + "sha256": "deca45ec3aa51f70e1c235e17d72f3a7a378d56b59ed3ab7b4654a8a72382802", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 2, + "row": 1160 + }, + { + "path": "common/Motion Correction Files/lucas-kanade/correct_scanned_imaging.m", + "sha256": "fc6465e827fa33ab2a87f8fb11912acb36df7fb1313d1591cbb953d8fe734642", + "language": "MATLAB", + "lines": 605, + "truncated": false, + "block": 2, + "row": 1560 + }, + { + "path": "common/Motion Correction Files/lucas-kanade/detectFullframeRecursive.m", + "sha256": "d6161a5978091d9d2643e439afbc663c20003ab791c63ada833a5e38b3a5d614", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 2, + "row": 1226 + }, + { + "path": "common/Motion Correction Files/lucas-kanade/doLucasKanade.m", + "sha256": "5946a972987d1f9599672a9bb471e555cf9f23c5bfda48cf511e2c71e22d56a2", + "language": "MATLAB", + "lines": 140, + "truncated": false, + "block": 2, + "row": 1418 + }, + { + "path": "common/Motion Correction Files/lucas-kanade/doLucasKanadeSPMD.m", + "sha256": "da5bae8b0bacf4283c6b6b14251e389155e68a6ce7b284c5e9d6671aeca5840a", + "language": "MATLAB", + "lines": 292, + "truncated": false, + "block": 2, + "row": 1514 + }, + { + "path": "common/Motion Correction Files/lucas-kanade/fastBSpline/CompileMexFiles.m", + "sha256": "f3e449054a8efa73915012876c0e5179a0bffaf422fcb1725a297ed0ac283c2e", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 2, + "row": 1161 + }, + { + "path": "common/Motion Correction Files/lucas-kanade/fastBSpline/TryBSpline.m", + "sha256": "8669a6c93da0fcb11ef94e3131534db410b86935486ff56bc5562c9d9d3d2d6f", + "language": "MATLAB", + "lines": 151, + "truncated": false, + "block": 2, + "row": 1397 + }, + { + "path": "common/Motion Correction Files/lucas-kanade/fastBSpline/evalBSpline.cpp", + "sha256": "7656f56780092329d9f0fc64afd47395ed3145c008fe35de70d3619f135a52fe", + "language": "C++", + "lines": 162, + "truncated": false, + "block": 2, + "row": 276 + }, + { + "path": "common/Motion Correction Files/lucas-kanade/fastBSpline/evalBin.cpp", + "sha256": "0fe934042afb1cdb32e04e75d7d1b72b646d5b60e8cfc4701b605e66228d4c50", + "language": "C++", + "lines": 162, + "truncated": false, + "block": 2, + "row": 278 + }, + { + "path": "common/Motion Correction Files/lucas-kanade/fastBSpline/evalBin.snip.cpp", + "sha256": "1f8c2bb02705802a608f063c6755b6aebb1d712ef8f2ddea17d4efd784a7fc75", + "language": "C++", + "lines": 10, + "truncated": false, + "block": 2, + "row": 77 + }, + { + "path": "common/Motion Correction Files/lucas-kanade/fastBSpline/evalBinTimesY.cpp", + "sha256": "6a88cc25d3991f4c6cd369bc011cea0600f4ba5273fad0a106aef065cb3ced9f", + "language": "C++", + "lines": 171, + "truncated": false, + "block": 2, + "row": 294 + }, + { + "path": "common/Motion Correction Files/lucas-kanade/fastBSpline/evalBinTimesY.snip.cpp", + "sha256": "94f395ee06e0c2bd1b91f4d2394a7e75d0832f9271b23d2b35b025e4c9b1494a", + "language": "C++", + "lines": 11, + "truncated": false, + "block": 2, + "row": 78 + }, + { + "path": "common/Motion Correction Files/lucas-kanade/fastBSpline/evalBspline.snip.cpp", + "sha256": "b553d5867f64e4f1ed70b79cb1a9b12c42307a632b7ab78694e07b796eedc6e1", + "language": "C++", + "lines": 13, + "truncated": false, + "block": 2, + "row": 79 + }, + { + "path": "common/Motion Correction Files/lucas-kanade/fastBSpline/fastBSpline.m", + "sha256": "9a05cdd028e5d926897c40c40e5a00bee0e9e28bb5e39dde420977be1780e914", + "language": "MATLAB", + "lines": 304, + "truncated": false, + "block": 2, + "row": 1541 + }, + { + "path": "common/Motion Correction Files/lucas-kanade/fastBSpline/mexmetypecheck.cpp", + "sha256": "08958d0b51e21dadc179f7c3d75b53638f5676e7726b1a35ba204532da889a1b", + "language": "C++", + "lines": 46, + "truncated": false, + "block": 2, + "row": 113 + }, + { + "path": "common/Motion Correction Files/lucas-kanade/fftalign.m", + "sha256": "8101a4bb30e119e2a89b45716016d280cec6310aa45b4a54ad6c93a95df5d696", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 2, + "row": 1196 + }, + { + "path": "common/Motion Correction Files/lucasKanade_affineReg.m", + "sha256": "fdcb174ceb95c80a0a9f057a0830952f44376ea6b5ea34468098258ae83ab7aa", + "language": "MATLAB", + "lines": 195, + "truncated": false, + "block": 2, + "row": 1525 + }, + { + "path": "common/Motion Correction Files/lucasKanade_plus_nonrigid.m", + "sha256": "496ebe80981be8387915a8e65eff4c0315da17652f3904e769ea901cae3655e7", + "language": "MATLAB", + "lines": 271, + "truncated": false, + "block": 2, + "row": 1539 + }, + { + "path": "common/Motion Correction Files/lucasKanade_plus_nonrigid_memMap.m", + "sha256": "01ba276beb09cb4750124f9730655877cd8bb41537f8740153dfc0c8847784a1", + "language": "MATLAB", + "lines": 301, + "truncated": false, + "block": 2, + "row": 1546 + }, + { + "path": "common/Motion Correction Files/parseScanimageTiff.m", + "sha256": "4a788f93b8e3c87cfb71963595e00c08383e25c7aab43ee0bb4ca74c44259062", + "language": "MATLAB", + "lines": 62, + "truncated": false, + "block": 2, + "row": 1379 + }, + { + "path": "common/Motion Correction Files/scriptTestAddingDisplacementFields.m", + "sha256": "fc298e59c84286853b54fd4575a8ab718f3bdad3ebecd769c8f13ad7823fc26f", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 2, + "row": 1289 + }, + { + "path": "common/Motion Correction Files/scriptTestMotionCorrectionFunction.m", + "sha256": "186da57b81e360aa714cbf789312ff406f78170d68cd62fa38bdfe6f45d823f6", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 2, + "row": 1294 + }, + { + "path": "common/Motion Correction Files/track_subpixel_wholeframe_motion_fft_forloop.m", + "sha256": "60413e21ef847c473c90e6abb7655ae6b7bb5005fc7a41ec6ab777ed8dc64c5b", + "language": "MATLAB", + "lines": 203, + "truncated": false, + "block": 2, + "row": 1500 + }, + { + "path": "common/Motion Correction Files/translateAcq.m", + "sha256": "762729f6692d6a30b005969012fe26fc19dea8370d914ca4996d33c7d42fe61b", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 2, + "row": 1201 + }, + { + "path": "common/Motion Correction Files/withinFile_fullFrame_fft.m", + "sha256": "b8ce55fe34b1a807efe05c25eec6313ec9fe94175a11e918a36235a8a0beeba6", + "language": "MATLAB", + "lines": 44, + "truncated": false, + "block": 2, + "row": 1330 + }, + { + "path": "common/Motion Correction Files/withinFile_segmentConsensus.m", + "sha256": "fa5ee13cdfcea2dc7c4b0232db588e6a06b8099c42b950853950473301efcb85", + "language": "MATLAB", + "lines": 68, + "truncated": false, + "block": 2, + "row": 1388 + }, + { + "path": "common/Motion Correction Files/withinFile_withinFrame_lucasKanade.m", + "sha256": "8a66bab7b352bfadc5b50ccacc3ebc95c4592e47fa4a50ae6a0b484424947002", + "language": "MATLAB", + "lines": 217, + "truncated": false, + "block": 2, + "row": 1529 + }, + { + "path": "common/SC2Pinit.m", + "sha256": "6187fcc628abad0af98525c8cdf845cb41c571c97177bdb797b65b0706af73f3", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 2, + "row": 1287 + }, + { + "path": "common/calcActivityOverviewImg.m", + "sha256": "53406505e677ba9fc9d04d3953f5ec0b6d43905d842657811c8e24717100de0f", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 2, + "row": 1297 + }, + { + "path": "common/diag2full.m", + "sha256": "04f4b7d15dc1bc32eeeba31b06399e32b8055b2a141f5a561c11e3ef276f6709", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 2, + "row": 1174 + }, + { + "path": "common/playMov.m", + "sha256": "9773858d2fc1282e4ed95bd1a41aed56900fb00cfbf33fc7bf239ce633079703", + "language": "MATLAB", + "lines": 108, + "truncated": false, + "block": 2, + "row": 1400 + }, + { + "path": "common/updateOldAcq/addMovieSizes.m", + "sha256": "85de2bab0e0dbcd9488477250e681cabb015decde6508f66893fac405529398e", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 2, + "row": 1283 + }, + { + "path": "common/updateOldAcq/removeRoiList.m", + "sha256": "631a3ab28aa42a1354761e7b909fbda17ed9016156657a608294ae9ce9716a4d", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 2, + "row": 1221 + }, + { + "path": "personal/Ari/addSIMetaData.m", + "sha256": "83d9346c852ac5420ef549fe2778b1ffaff2fcc56f551d04c7e2d6de0d64376f", + "language": "MATLAB", + "lines": 85, + "truncated": false, + "block": 2, + "row": 1363 + }, + { + "path": "personal/Ari/am2PInit.m", + "sha256": "55f2699a7c1b44bd974a87074c581003ec07f7d1c73fb073a4213e2319af3d52", + "language": "MATLAB", + "lines": 163, + "truncated": false, + "block": 2, + "row": 1449 + }, + { + "path": "personal/Ari/changeAcqPathToLocal.m", + "sha256": "89d37c4dea51d50c3191ee4e08b693146b9053eb84585bc3dfc4b00f884f454c", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 2, + "row": 1319 + }, + { + "path": "personal/Ari/copyLocalAcqToServer.m", + "sha256": "3a4d4969c69285c8f4a182adac94b7c27031a8541f82d12662f040e7769efdde", + "language": "MATLAB", + "lines": 76, + "truncated": false, + "block": 2, + "row": 1358 + }, + { + "path": "personal/Ari/createAcquisitionObjects.m", + "sha256": "62614de6358d018708cd3da126288588b9219ffc391293f1d13e51656096472b", + "language": "MATLAB", + "lines": 145, + "truncated": false, + "block": 2, + "row": 1453 + }, + { + "path": "personal/Ari/nameFiles2PAM.m", + "sha256": "e9864d04f6cca85a51a0edf6ab520dfb7d4d597003d3ab342c66cdd800592687", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 2, + "row": 1176 + }, + { + "path": "personal/Caroline/CAR2Pinit.m", + "sha256": "174247199f2127aadc21ef9a3e54fd923bbb7256ec88347bda2ac7a05ba98f83", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 2, + "row": 1295 + }, + { + "path": "personal/Laura/getOverviewImg_lnd.m", + "sha256": "af432298da0e64d67ce3ef559a933871ecb7cf30e84bb68f3678bd6e3003a5de", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 2, + "row": 1177 + }, + { + "path": "personal/Laura/lnd_init.m", + "sha256": "7a9308e65854383dbd88d60812923f410a46d299395126f52498999e283638bb", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 2, + "row": 1271 + }, + { + "path": "personal/Laura/lnd_init_green.m", + "sha256": "e768f8d87059eca0fa51264aeec5be978d9892a96da5612b92072a762fd9e27b", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 2, + "row": 1272 + }, + { + "path": "personal/Laura/lnd_outer_allMouse.m", + "sha256": "2f2f3a58897e12430c805c76f689456f55dfab3312a036d5736b9cf1750f7d11", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 2, + "row": 1223 + }, + { + "path": "personal/Laura/lnd_outer_allMouse_addSlices.m", + "sha256": "3d7fa9fd27c324b9c6a9ff9b465901b2623e4d7aba26ac4f644526610ef69b11", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 2, + "row": 1219 + }, + { + "path": "personal/Laura/lnd_outer_allMouse_postMoCor.m", + "sha256": "2ffcd9754bcc1f4ae3bd82a05f2d188b2c2b37e2af1b0d0921fe0917d90d8f75", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 2, + "row": 1231 + }, + { + "path": "personal/Laura/move_files.m", + "sha256": "a0aee08ae67b8037d4b821dc46aa6cd6008f7944861300df96a1111c266c1ab6", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 2, + "row": 1206 + }, + { + "path": "personal/Laura/overlayROIs.m", + "sha256": "3945ffd33a40500b45e7b213b0e5abaaca7eefdb9bc24be098d755cac6b2def8", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 2, + "row": 1166 + }, + { + "path": "personal/Laura/save_taryn.m", + "sha256": "e8a4aec90a3e7b038bf10746851c99e33351942907dc0f7cc47f3d9c2bf39be3", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 2, + "row": 1170 + }, + { + "path": "personal/Matthias/MJLM_MJLMselectROIs.m", + "sha256": "67825836cae915a1ce080b08228c29b86b3393a2dde3390765cd1fad138b541a", + "language": "MATLAB", + "lines": 799, + "truncated": false, + "block": 2, + "row": 1561 + }, + { + "path": "personal/Matthias/MJLMselectROIs.m", + "sha256": "62d0d8ff402d38a7c69d68929090ef2e99870d9e1bc754e42b9082fe09a06ac1", + "language": "MATLAB", + "lines": 1059, + "truncated": false, + "block": 2, + "row": 1562 + }, + { + "path": "personal/Matthias/acq2tempDir.m", + "sha256": "3c397a1909cf8da2804b855f8511b1a6d230ace75e60466fe306b5155898a0bd", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 2, + "row": 1291 + }, + { + "path": "personal/Matthias/applyManualLineshiftToFiles.m", + "sha256": "8b73acb5f65fc51b38ff1003913e9f89a94cc5e91070408e2af786ddcfa9c753", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 2, + "row": 1188 + }, + { + "path": "personal/Matthias/changeDir.m", + "sha256": "6ab2bd7c01cc11e8e3b2bd385c9097d2651c9c703700cdb30d97b7e5bccdd7d7", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 2, + "row": 1171 + }, + { + "path": "personal/Matthias/extractROIsBinWithEdgeSubtraction.m", + "sha256": "e872c39ffda90d24cfb16cb6d72b564dadb9dd8878fc22e37e91edb4cc9299f2", + "language": "MATLAB", + "lines": 106, + "truncated": false, + "block": 2, + "row": 1409 + }, + { + "path": "personal/Matthias/getBaseline_ransac_demo.m", + "sha256": "a26eac50dbf9eee7617d8d8b5148a18fc3390394e03efcc6260b486208ea995f", + "language": "MATLAB", + "lines": 217, + "truncated": false, + "block": 2, + "row": 1473 + }, + { + "path": "personal/Matthias/getDiags.m", + "sha256": "f26f25ede7eb9cc8318d6e8b85ce67583fdc4bd14cb7645006e98b8267ff7c1f", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 2, + "row": 1165 + }, + { + "path": "personal/Matthias/getEdgeTrace.m", + "sha256": "8d1990e3282a0ee87a33cb792635a429e2bbfcafd6543dc533c8cf6ed63d0f64", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 2, + "row": 1238 + }, + { + "path": "personal/Matthias/getOverviewImg.m", + "sha256": "ae3b664f2fb7c595357d158da5589a44874e6f9aeb2745966dc3473b7d8045e1", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 2, + "row": 1229 + }, + { + "path": "personal/Matthias/getRoiMovie.m", + "sha256": "8a9545e5db3fd96914d5279c723c8b78da3559032103f36a0f3009f187bc5dbd", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 2, + "row": 1235 + }, + { + "path": "personal/Matthias/mjlmInitialization.m", + "sha256": "2ba064454116eecd5f78cd5058275292aa6ae63d131a796dfabccc719b2b6937", + "language": "MATLAB", + "lines": 111, + "truncated": false, + "block": 2, + "row": 1420 + }, + { + "path": "personal/Matthias/mmCovMat.m", + "sha256": "1182b1ca456cf9db6e80fe45f7fe06bc1ada0dc89e39b0c36bdc792f45376fd9", + "language": "MATLAB", + "lines": 65, + "truncated": false, + "block": 2, + "row": 1311 + }, + { + "path": "personal/Matthias/mmPixCov.m", + "sha256": "5068015dec1c2a85383e2f1e2f2d223282eb7a61ebd17e2b519c69e7b17a1f01", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 2, + "row": 1270 + }, + { + "path": "personal/Matthias/nearestSPD.m", + "sha256": "06eb75b3663e179ddb2cf653c9be778fb41d1672a3b8972995dfc373b176d40e", + "language": "MATLAB", + "lines": 65, + "truncated": false, + "block": 2, + "row": 1299 + }, + { + "path": "personal/Matthias/renameChangeNameOfFilesInFolder.m", + "sha256": "e6014211e4a674f69878e8def8f679e3b32579cd15d0d542bc57ee48e5bd5e92", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 2, + "row": 1203 + }, + { + "path": "personal/Matthias/runningPrctile/runningPrctile.m", + "sha256": "4b9a7a7a8ea546c24b1a6fee4dda60949400db6be1fb4a61583b2ff76133a611", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 2, + "row": 1207 + }, + { + "path": "personal/Matthias/runningPrctile/runningPrctileMat.m", + "sha256": "42e73f504a1dc9125d48664714c51801af9b6decc3b16a443f212c83cea33912", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 2, + "row": 1224 + }, + { + "path": "personal/Matthias/runningPrctile/runningPrctileMex.cpp", + "sha256": "463b286732c2111682adb5a8a96d8bab0108d1749ce2a166b749a9ac167222a4", + "language": "C++", + "lines": 84, + "truncated": false, + "block": 2, + "row": 171 + }, + { + "path": "personal/Matthias/scriptBatchInitializeSessions.m", + "sha256": "2685423cd67bba76b5d7d0c4a518caa3f8b2f372817f0567d27ac88f73c7bfe6", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 2, + "row": 1234 + }, + { + "path": "personal/Selmaan/AJlk.m", + "sha256": "2ca7341f75b3a45779c2c66a4149ecf82685003fe88d34b8f55d1cebd588d670", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 2, + "row": 1266 + }, + { + "path": "personal/Selmaan/SClk.m", + "sha256": "914030adc1e9bb39f77065743a50e854efbe443eb75abc329b1ab8d20c35b3fb", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 2, + "row": 1293 + }, + { + "path": "personal/Selmaan/SCsc.m", + "sha256": "ea652244810298d81dc2932a4fa787f4bd96823449833f9c0be3955191c1dc7d", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 2, + "row": 1286 + }, + { + "path": "personal/Selmaan/acq2server.m", + "sha256": "f2f36347773c8e6a34d8708d4e5e8f9e7ae830f787cf77e11882d77bfb0d493f", + "language": "MATLAB", + "lines": 53, + "truncated": false, + "block": 2, + "row": 1282 + }, + { + "path": "personal/Selmaan/addCorrMovies.m", + "sha256": "079b8b18576a6cd54345d8969d255c7d46d4eb53e417d125dc8642f85d72e7a8", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 2, + "row": 1247 + }, + { + "path": "personal/Selmaan/avgViewerScript.m", + "sha256": "963f7a9ed6693f7530cf77c19291f6afa3c7b959739db6918dd51c88e50c0711", + "language": "MATLAB", + "lines": 77, + "truncated": false, + "block": 2, + "row": 1334 + }, + { + "path": "personal/Selmaan/calcPxCovBin.m", + "sha256": "613c27e255484c4668472bc7ee9543b800e1d00ef524212c26640d0faa2def27", + "language": "MATLAB", + "lines": 99, + "truncated": false, + "block": 2, + "row": 1406 + }, + { + "path": "personal/Selmaan/calcSeedCovBin.m", + "sha256": "d68ac94136a4d92de84efb4e6c51592e9fedf8bf3184841ef75e5eab5b15b959", + "language": "MATLAB", + "lines": 110, + "truncated": false, + "block": 2, + "row": 1435 + }, + { + "path": "personal/Selmaan/eventTriggeredMovie.m", + "sha256": "2d8e551f417a207457d2ba6241692687702acaf655eeeeec47a8b03d97414612", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 2, + "row": 1335 + }, + { + "path": "personal/Selmaan/fieldsPxCov.m", + "sha256": "4a41100ebeb9444287534cdd06d9daa3619a6ddaac9d0441b916981ae2700c68", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 2, + "row": 1280 + }, + { + "path": "personal/Selmaan/getRoiMovie.m", + "sha256": "29ed32ab14c2a3b60def1f121ae2e1fa6cd4a41a02f1271d9c01de1f57df64ef", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 2, + "row": 1252 + }, + { + "path": "personal/Selmaan/getStimEvokedMovie.m", + "sha256": "a7fd35e4bcd743ce2a42f3d5ac02d11080b6b47fb874e8a53097d92b2e6c36c5", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 2, + "row": 1246 + }, + { + "path": "personal/Selmaan/viewAcq.m", + "sha256": "b2b329a62f282de40dea510bdebba9ede40c4dc59ec49b14b4ac4aacc6764f11", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 2, + "row": 1194 + }, + { + "path": "personal/populateMovieList.m", + "sha256": "54d07f8bdc314531170433790fa3bc0084943dc88d0e264fe9b807868b8fa6df", + "language": "MATLAB", + "lines": 53, + "truncated": false, + "block": 2, + "row": 1305 + } + ] +} \ No newline at end of file diff --git a/manifests/3b/zenodo__18745819.json b/manifests/3b/zenodo__18745819.json new file mode 100644 index 0000000000000000000000000000000000000000..c7e820f42951f602727712e95d64b93c659e9f87 --- /dev/null +++ b/manifests/3b/zenodo__18745819.json @@ -0,0 +1,111 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18745819", + "url": "10.5281/zenodo.18745819", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "Inspect.py", + "sha256": "2f68e82aa1c02c2346b3f51495af1f00ea57810a6859b48b2db178dcc7fb476a", + "language": "Python", + "lines": 364, + "truncated": false, + "block": 2, + "row": 2130 + }, + { + "path": "Misc scripts/010_RecuentoNN.py", + "sha256": "781b8c1a8f65ead001abf585a1625978deef9997a865f732dfbad1217cc93a74", + "language": "Python", + "lines": 162, + "truncated": false, + "block": 2, + "row": 1900 + }, + { + "path": "Misc scripts/Figures.py", + "sha256": "1bf476337050a2a46b379a8bd51936bcfb2d52e72f05f459bc0c0775367ad511", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 2, + "row": 1744 + }, + { + "path": "Misc scripts/RecuentoNN_epi.py", + "sha256": "d8c3fa94868adde27362dccce1157b175b69cf76744ac3ebc9af73dfc4680a6b", + "language": "Python", + "lines": 286, + "truncated": false, + "block": 2, + "row": 2101 + }, + { + "path": "Misc scripts/TruePositive.py", + "sha256": "2455274fbb9bc3cda450ec3b0b2cfecaefeabcc0ba148896cd2a69388d635833", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 2, + "row": 1985 + }, + { + "path": "Misc scripts/TruePositiveInspect.py", + "sha256": "33c3059422acbe0797e03d0832d7a96dfe223f533748fb67efe56fbd611ef533", + "language": "Python", + "lines": 307, + "truncated": false, + "block": 2, + "row": 2075 + }, + { + "path": "Misc scripts/TruePositiveNuc.py", + "sha256": "460d3f888364e7b01bd2b68793875d9f8dc6c8167caff61c3b60e431f1e287a5", + "language": "Python", + "lines": 241, + "truncated": false, + "block": 2, + "row": 2019 + }, + { + "path": "README.md", + "sha256": "527fbbded57ce5d5ddc0b75342695bdc00fdd83795de6d6fe143810985f97268", + "language": "Text", + "lines": 7, + "truncated": false, + "block": 2, + "row": 2589 + }, + { + "path": "RecuentoNN.py", + "sha256": "4435b9a149499d1f30cc60e8c1e0cc2e1d539bfe30bc2fb60497e2ff4efa193e", + "language": "Python", + "lines": 267, + "truncated": false, + "block": 2, + "row": 2085 + }, + { + "path": "Statistics and figures/R scripts/Fig5_models.R", + "sha256": "ee4ae7698877c91d2460b970d80adbf30b4e4a1de3aef32ec28f98dc3fc3fe6a", + "language": "R", + "lines": 861, + "truncated": false, + "block": 2, + "row": 2374 + }, + { + "path": "Statistics and figures/R scripts/SMAPE_plots.R", + "sha256": "ffb59bc7e016a6c789c84eaf0224631cf2d1ca77ca1ec79420e0bb1da98730ac", + "language": "R", + "lines": 312, + "truncated": false, + "block": 2, + "row": 2349 + } + ] +} \ No newline at end of file diff --git a/manifests/3c/figshare__31830526.json b/manifests/3c/figshare__31830526.json new file mode 100644 index 0000000000000000000000000000000000000000..7543b4d6ada3cee10835da48eb62841d644f0d01 --- /dev/null +++ b/manifests/3c/figshare__31830526.json @@ -0,0 +1,48 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "figshare:31830526", + "url": "https://doi.org/10.6084/m9.figshare.31830526", + "host": "figshare.com", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "BL_PSDperVS_fromunfilteredfiles_20241027.m", + "sha256": "b58f50dccbc903ac2d2a6248d41e03f6d035bf1eaeaa029548fcf72c94473162", + "language": "MATLAB", + "lines": 96, + "truncated": false, + "block": 1, + "row": 3379 + }, + { + "path": "BriefAwakenings.m", + "sha256": "6a634a954cadabcb148b66f222ee7ec1bbcfc62195b1cf4a9184d8adfd6039d2", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 1, + "row": 2528 + }, + { + "path": "Resampling_Feb2022_20241027.m", + "sha256": "74af2c801ca3038ebd36686ddadd0f8246ece341d28f4b69073f9f7f68d68e70", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 1, + "row": 3065 + }, + { + "path": "SleepEpisodes.m", + "sha256": "99355f3c0d5a5036a94597b465ac6508637648149f3cc60a01a07f2a9487ee78", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 1, + "row": 2514 + } + ] +} \ No newline at end of file diff --git a/manifests/3c/github.com__allenneuraldynamics__aind-ephys-qc-collector.json b/manifests/3c/github.com__allenneuraldynamics__aind-ephys-qc-collector.json new file mode 100644 index 0000000000000000000000000000000000000000..2dce6f19ee9fa61038427544fed06872795a1388 --- /dev/null +++ b/manifests/3c/github.com__allenneuraldynamics__aind-ephys-qc-collector.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/allenneuraldynamics/aind-ephys-qc-collector", + "url": "https://github.com/AllenNeuralDynamics/aind-ephys-qc-collector", + "host": "github.com", + "commit": "92efed3c6d3943ad5a0eb8c6243a5a3efbd2eed8", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "d7609c858f47823b9d7cee46253bffc40e93fd55effa744aa249e97a603c65cb", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1139 + }, + { + "path": "README.md", + "sha256": "37c1475727463b8a5ae9eeefa438862a89d5632c67977f2a30c09715c968471c", + "language": "Text", + "lines": 23, + "truncated": false, + "block": 2, + "row": 2594 + }, + { + "path": "code/run_capsule.py", + "sha256": "86bf72c06841b7988daa4a751eb0a0392477ef86eabf4f0e6adea151f541c302", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 2, + "row": 1895 + } + ] +} \ No newline at end of file diff --git a/manifests/3c/github.com__allenneuraldynamics__aind-units-nwb.json b/manifests/3c/github.com__allenneuraldynamics__aind-units-nwb.json new file mode 100644 index 0000000000000000000000000000000000000000..19d20bb12b152ae513e40b6b1d6fcef7cca8d0ef --- /dev/null +++ b/manifests/3c/github.com__allenneuraldynamics__aind-units-nwb.json @@ -0,0 +1,48 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/allenneuraldynamics/aind-units-nwb", + "url": "https://github.com/AllenNeuralDynamics/aind-units-nwb", + "host": "github.com", + "commit": "50d25fcadabe6c05d09adc1dd9f573a93d90b6cc", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "d7609c858f47823b9d7cee46253bffc40e93fd55effa744aa249e97a603c65cb", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1139 + }, + { + "path": "README.md", + "sha256": "f785029f3eb03ec30e310e27ce5dd5e3aa87dfe5e0fce6bd27f36d4312a7d35b", + "language": "Text", + "lines": 35, + "truncated": false, + "block": 2, + "row": 2598 + }, + { + "path": "code/run_capsule.py", + "sha256": "a354b31ad01b9796e9494cbb706a284082e855e28409d4c44c0677b72c687c83", + "language": "Python", + "lines": 585, + "truncated": false, + "block": 2, + "row": 2211 + }, + { + "path": "code/utils.py", + "sha256": "f9ec947bba16955a1becca885e3d2c5d03637ed7974db2584b4b5c88d63923c8", + "language": "Python", + "lines": 171, + "truncated": false, + "block": 2, + "row": 2027 + } + ] +} \ No newline at end of file diff --git a/manifests/3c/github.com__chemprop__chemprop.json b/manifests/3c/github.com__chemprop__chemprop.json new file mode 100644 index 0000000000000000000000000000000000000000..879f421e642ffaadf39ef23577973caa849da06d --- /dev/null +++ b/manifests/3c/github.com__chemprop__chemprop.json @@ -0,0 +1,1587 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/chemprop/chemprop", + "url": "https://github.com/chemprop/chemprop", + "host": "github.com", + "commit": "db0bb86fbad6f6ec3c414202810390d8acc8baa0", + "license": "MIT", + "license_confirmed_by": "license file LICENSE.txt", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.txt", + "sha256": "7c3c3fde4b691ca2ab80c2baffbe30986a5dac355415b6776e67f0f7cd4b960c", + "language": "License", + "lines": 28, + "truncated": false, + "block": 1, + "row": 2201 + }, + { + "path": "README.md", + "sha256": "629d9e571828c113518ebebe31551e29cc7652353bb64c26059352a67feb1e97", + "language": "Text", + "lines": 66, + "truncated": false, + "block": 1, + "row": 11938 + }, + { + "path": "chemprop/__init__.py", + "sha256": "be91a43373c9076780edd4ad5c903f621d0b952ca08c70f885e6033afdfbf739", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 1, + "row": 5180 + }, + { + "path": "chemprop/callbacks/__init__.py", + "sha256": "b1384e975dff77c19505da0300ce9fc71fd1e2f9fc7283c393ccd58416ed91d6", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 1, + "row": 5211 + }, + { + "path": "chemprop/callbacks/interpret.py", + "sha256": "97f4ff95adf9a973a2179c63a2a930118298183770f54c9089111f5abcd47a2f", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 1, + "row": 7839 + }, + { + "path": "chemprop/cli/common.py", + "sha256": "15224e86a3b78224e5cf94e8bcda3416a94a46f5ea995866566b3c3655711338", + "language": "Python", + "lines": 288, + "truncated": false, + "block": 1, + "row": 8999 + }, + { + "path": "chemprop/cli/conf.py", + "sha256": "34169465d130006b7786f4dfe1b16cba44e93b252cd12747addc36726a696ee3", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 1, + "row": 5277 + }, + { + "path": "chemprop/cli/convert.py", + "sha256": "9aa21bfbea06a0b31436954a50ef0d9fc226776993a5d99399c8be29efe17b98", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 1, + "row": 6513 + }, + { + "path": "chemprop/cli/fingerprint.py", + "sha256": "5f671ff9fa622651e50a33d679b44cf468880b03abc75401a2a0f4cff579103b", + "language": "Python", + "lines": 257, + "truncated": false, + "block": 1, + "row": 8460 + }, + { + "path": "chemprop/cli/hpopt.py", + "sha256": "93ce7e03e2432eb788453ab931644bef8a38229f6ccaaa28e3edc2b03dfb36b9", + "language": "Python", + "lines": 683, + "truncated": false, + "block": 1, + "row": 9486 + }, + { + "path": "chemprop/cli/main.py", + "sha256": "76846879761fc5d310d25ae29427a285597a19a8840350973e7a3e1b04356cf4", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 1, + "row": 6725 + }, + { + "path": "chemprop/cli/predict.py", + "sha256": "a8896167d53d3e4b807602695a9e63c5465e4f9e7ae9e47e9bddb1d31612bc66", + "language": "Python", + "lines": 948, + "truncated": false, + "block": 1, + "row": 9695 + }, + { + "path": "chemprop/cli/train.py", + "sha256": "0919e5cbad51d8b7228b6de0a4a5fe41da4688a3620553b9c119b9e0fd8d41ef", + "language": "Python", + "lines": 2391, + "truncated": false, + "block": 1, + "row": 9855 + }, + { + "path": "chemprop/cli/utils/MAB_parsing.py", + "sha256": "20e495ce27167f02da0c9e56adbfe4a21a6f87aae848d10c6d80f552f15d79b2", + "language": "Python", + "lines": 260, + "truncated": false, + "block": 1, + "row": 8464 + }, + { + "path": "chemprop/cli/utils/__init__.py", + "sha256": "63f011045059a7125e9aefa0fe8b9755340789e8afda90229d0b9584529e4dfb", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 1, + "row": 5614 + }, + { + "path": "chemprop/cli/utils/actions.py", + "sha256": "d493b324eff1f2ce054492108ca7fe678f4d90c8582f5883119025967cba0e1b", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 1, + "row": 5514 + }, + { + "path": "chemprop/cli/utils/args.py", + "sha256": "22ac511bb9de1b876c84a53b2388589d613a21a9763daf19f4a6fc62b6297a21", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 1, + "row": 5909 + }, + { + "path": "chemprop/cli/utils/command.py", + "sha256": "5f353eef2e95bb1de88929ae29acebfdba71b5ec54a66b49edb04fb2bf0cfa6c", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 1, + "row": 5473 + }, + { + "path": "chemprop/cli/utils/parsing.py", + "sha256": "67f3060582058017f1e3b44d996f86819cfdcb65fcb6bcab8649bfbf4d753727", + "language": "Python", + "lines": 644, + "truncated": false, + "block": 1, + "row": 9429 + }, + { + "path": "chemprop/cli/utils/utils.py", + "sha256": "7191746b68ec57482875af21cd3176a1c73cb1dbc5234ac8c8747d9c74c97cd0", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 1, + "row": 5749 + }, + { + "path": "chemprop/conf.py", + "sha256": "570fe3ad5f06356fc70403ff78963fe6560f4fef7cc86da3f2c67523bb9506e4", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 1, + "row": 5344 + }, + { + "path": "chemprop/data/__init__.py", + "sha256": "64bbf67aebd2c3b26e32771573f9b7a6e6962b221c56ae491255fba6502e01c2", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 1, + "row": 6050 + }, + { + "path": "chemprop/data/collate.py", + "sha256": "2f9645ce7532d19fbfd226842370232d9c065f7b47cb35da4865a32b18865515", + "language": "Python", + "lines": 207, + "truncated": false, + "block": 1, + "row": 8103 + }, + { + "path": "chemprop/data/dataloader.py", + "sha256": "ead35618e19edddd73e615f0b37abf7acd59d42577f12bbd7d20dd78068fa926", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 1, + "row": 6801 + }, + { + "path": "chemprop/data/datapoints.py", + "sha256": "4c4a7664a02525e65ab0310c7d41948b92921acc5f85197bc532b7e5ddbbae2f", + "language": "Python", + "lines": 344, + "truncated": false, + "block": 1, + "row": 8874 + }, + { + "path": "chemprop/data/datasets.py", + "sha256": "e94a5155200d77f06753ace83d509d5e1e72e544985118108f6f2db3a8ad21a7", + "language": "Python", + "lines": 860, + "truncated": false, + "block": 1, + "row": 9575 + }, + { + "path": "chemprop/data/molgraph.py", + "sha256": "d0ce10b07e1cdce9c1ebc047050ff79b968e35a4dccfb71088133769d7aa9028", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5484 + }, + { + "path": "chemprop/data/samplers.py", + "sha256": "b7f57297e75d11743904125bf5e0509e1d8d54cc50385f8cbd347ecb18bb4042", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 1, + "row": 6286 + }, + { + "path": "chemprop/data/splitting.py", + "sha256": "2c1fb6c6597843cf503aace527c846e0f30d9f134e23262d76ee9c97c6e30950", + "language": "Python", + "lines": 239, + "truncated": false, + "block": 1, + "row": 8392 + }, + { + "path": "chemprop/exceptions.py", + "sha256": "4db8369de8b0271aa0043657f0db2db72d7a0bdc6ce157b39f6cdd70a93d1acb", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 1, + "row": 5304 + }, + { + "path": "chemprop/featurizers/__init__.py", + "sha256": "be147eda253f6f8f1e4c46b40d7953db20381073f0216e523f9ac1061afbf8f6", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 1, + "row": 6016 + }, + { + "path": "chemprop/featurizers/atom.py", + "sha256": "1e75b5006b19882592bbb2070119421500098f8b6cd833c13596b36b32b14610", + "language": "Python", + "lines": 288, + "truncated": false, + "block": 1, + "row": 8454 + }, + { + "path": "chemprop/featurizers/base.py", + "sha256": "cb3558c62fc3636038eba9082d26ae616c23305a4f30caceb362c0b84955b580", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 1, + "row": 5479 + }, + { + "path": "chemprop/featurizers/bond.py", + "sha256": "8befd5ea46123b077ead6b4dcacfe36a934b6b68169b37ecd7fd4dd87581fb66", + "language": "Python", + "lines": 130, + "truncated": false, + "block": 1, + "row": 7264 + }, + { + "path": "chemprop/featurizers/molecule.py", + "sha256": "2ea620765e982cffe87b46ab2054e729540b7166dd00646d1d96624bfa1fc03d", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 1, + "row": 6903 + }, + { + "path": "chemprop/featurizers/molgraph/__init__.py", + "sha256": "797afe2e4fc5fb61194e344780c642c79e509123eca2d60caea0f6a558d3d674", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 1, + "row": 5459 + }, + { + "path": "chemprop/featurizers/molgraph/cache.py", + "sha256": "69c5162ca08676a90aed568279f0ba556cd90258bd674f22acd2a4c6774f7226", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 1, + "row": 6598 + }, + { + "path": "chemprop/featurizers/molgraph/mixins.py", + "sha256": "6e031e235c2dff825ca3b85a4e45bf6cee6d91b9bceddc05be0099cb3b18fbf5", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 1, + "row": 5629 + }, + { + "path": "chemprop/featurizers/molgraph/molecule.py", + "sha256": "5e2c3eba99094baeca748eca5ce04f3d5c3af948d8460e60fba4e23bc0d30d6f", + "language": "Python", + "lines": 257, + "truncated": false, + "block": 1, + "row": 8402 + }, + { + "path": "chemprop/featurizers/molgraph/reaction.py", + "sha256": "2c94d1dafb0058a7ca326b1997d1a0a2e3b3074958fbb91b4e99dea197f0d2d4", + "language": "Python", + "lines": 470, + "truncated": false, + "block": 1, + "row": 9203 + }, + { + "path": "chemprop/models/__init__.py", + "sha256": "d148267b18ef60f403ac976cfd45af8554cb3429cdcde7513094f6fd54afcc93", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 1, + "row": 5172 + }, + { + "path": "chemprop/models/model.py", + "sha256": "15b526c28806f67b29152c02f34f2bc4a261890e815c55540005608ffa3b0fc7", + "language": "Python", + "lines": 323, + "truncated": false, + "block": 1, + "row": 8802 + }, + { + "path": "chemprop/models/mol_atom_bond.py", + "sha256": "79c6091310ce368cc35aeb4e7d2c21d143376e4c5b0dbbb5ace949200098efd0", + "language": "Python", + "lines": 569, + "truncated": false, + "block": 1, + "row": 9408 + }, + { + "path": "chemprop/models/multi.py", + "sha256": "72d8cbd5f805358d9275e04f4d0d7535a3495f631abbfe740b017a547ab8ccd8", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 1, + "row": 7065 + }, + { + "path": "chemprop/models/utils.py", + "sha256": "e2130334f1861b9582b69fbb70f3d7fc679da8ccce04dacee8926b1cce08d0a7", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 1, + "row": 5876 + }, + { + "path": "chemprop/nn/__init__.py", + "sha256": "b344735f5fccf244c8fcb0d1f5318b56b7ff2fbea9f94dbc84d3705c4e521359", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 1, + "row": 6677 + }, + { + "path": "chemprop/nn/agg.py", + "sha256": "ca9025b3a1292790a170d4c1bd889d78a9b51a50df6a4f7d693b660a11a66edd", + "language": "Python", + "lines": 133, + "truncated": false, + "block": 1, + "row": 7248 + }, + { + "path": "chemprop/nn/ffn.py", + "sha256": "98f0e9adf4f2ce1832ce9197cfa15dac17ded67c90f1f3a18d326145f1218d5c", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 1, + "row": 7553 + }, + { + "path": "chemprop/nn/hparams.py", + "sha256": "3ef39da7e7b8d7c423aeb6dbc7ba6310a76fc62f3ecec0d146dbbb0b3d4f5f8d", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 1, + "row": 5813 + }, + { + "path": "chemprop/nn/message_passing/__init__.py", + "sha256": "e9cf308569d827bea3a3353b1ec47b3eeb660109936c7d04c52777e1d7cb8e20", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 1, + "row": 5349 + }, + { + "path": "chemprop/nn/message_passing/base.py", + "sha256": "5939ac2e677db96be4a77a4f5d4acb0c1cdd2fd0819b36f0c9a07d16bcdd44da", + "language": "Python", + "lines": 289, + "truncated": false, + "block": 1, + "row": 8738 + }, + { + "path": "chemprop/nn/message_passing/mixins.py", + "sha256": "11194c99e05bbc88a66615452cc10f189ea2f3d210b61b5221fe46ca021b646d", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 1, + "row": 5810 + }, + { + "path": "chemprop/nn/message_passing/mol_atom_bond.py", + "sha256": "d53fbd8d3e2a65fa52024a06d6eb36f4d2e62f426d983356634ce7f7c5d0a4d6", + "language": "Python", + "lines": 388, + "truncated": false, + "block": 1, + "row": 9122 + }, + { + "path": "chemprop/nn/message_passing/multi.py", + "sha256": "b74056ec511b9664124b07550c1ede8f50ea3f0c4eefb8e9be0b8e3318eee215", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 1, + "row": 6671 + }, + { + "path": "chemprop/nn/message_passing/proto.py", + "sha256": "52db1d61478fbfcebeb51a57b5897b979218519e0703790cf05f0168dacf0952", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 1, + "row": 6934 + }, + { + "path": "chemprop/nn/metrics.py", + "sha256": "a0e90a624223cf5dfde1f09588c5a7ea560a2cec6a106948c8253ebded924d3a", + "language": "Python", + "lines": 692, + "truncated": false, + "block": 1, + "row": 9465 + }, + { + "path": "chemprop/nn/predictors.py", + "sha256": "bd9fcf8357559f449d5929033095be2b5c74169960fc3e2e55e2546e13c967a3", + "language": "Python", + "lines": 371, + "truncated": false, + "block": 1, + "row": 8642 + }, + { + "path": "chemprop/nn/transforms.py", + "sha256": "6820c6cc62f9c85b0644f0c25da65d6b91dc09e892e2ec174184d0d61ac4a4e0", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 1, + "row": 6388 + }, + { + "path": "chemprop/nn/utils.py", + "sha256": "b2feb22b85643ea295eb2a762a0c14ffe939833acdb7cbf5d2c1c6a8d7938bbe", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 1, + "row": 6057 + }, + { + "path": "chemprop/schedulers.py", + "sha256": "dd14f2941b7c567866e62a98d11be7986078710a9c9fc153ed88e0c496f0db17", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 1, + "row": 6625 + }, + { + "path": "chemprop/types.py", + "sha256": "7ed623968dda3bfcb6798b9c2aeed28b3f638394cc749ddedb0b17e4ff781063", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5015 + }, + { + "path": "chemprop/uncertainty/__init__.py", + "sha256": "564a2de84f6321ae77c4d46666e1c4dc2c69cfcde48a6f8c441ea1ad9a9a4a40", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 1, + "row": 6655 + }, + { + "path": "chemprop/uncertainty/calibrator.py", + "sha256": "768f1c44a30b0a3ad20201a71472107c3b0e7ed6e78b04c93a0c4a0ae67e1206", + "language": "Python", + "lines": 713, + "truncated": false, + "block": 1, + "row": 9552 + }, + { + "path": "chemprop/uncertainty/estimator.py", + "sha256": "daa1f4a784f0cc9ab891d876ee7b3e0d169782ab844716eec836d4f50ecdd73d", + "language": "Python", + "lines": 877, + "truncated": false, + "block": 1, + "row": 9665 + }, + { + "path": "chemprop/uncertainty/evaluator.py", + "sha256": "5c24b7593e2d8d387b7dfd5ccc6ab75c350db8b4f88fe1efe5969d58a10238fa", + "language": "Python", + "lines": 368, + "truncated": false, + "block": 1, + "row": 9031 + }, + { + "path": "chemprop/utils/__init__.py", + "sha256": "16b30b88cad3b197ef278aecba1175a3fe9074ecc2e85abae20942ea1026a4a9", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 1, + "row": 5214 + }, + { + "path": "chemprop/utils/registry.py", + "sha256": "6e1154eb3d528c4e28fe7527f029213cd9407143083f4edf1cc739ca29b426f0", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 1, + "row": 5896 + }, + { + "path": "chemprop/utils/utils.py", + "sha256": "305355d52b70f5ec11f638d0134aa36ca52cceea61c113f8380daf8cf6fdbefd", + "language": "Python", + "lines": 182, + "truncated": false, + "block": 1, + "row": 7459 + }, + { + "path": "chemprop/utils/v1_to_v2.py", + "sha256": "ee454feafbf5e6aa4e8d69c1b08f7643b17e437c1dce8aa7c8047d717fdbe848", + "language": "Python", + "lines": 336, + "truncated": false, + "block": 1, + "row": 8956 + }, + { + "path": "chemprop/utils/v2_0_to_v2_1.py", + "sha256": "94872de2af1f3b34b35fc89bf5492d62d84a85e723c1da78755f8fc5297d8e39", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 1, + "row": 5935 + }, + { + "path": "docs/source/conf.py", + "sha256": "24d23a32db8d143bd8cea2c38240c86e80400e60228f9f51e96bb817c0f89a37", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 1, + "row": 6211 + }, + { + "path": "docs/source/tutorial/python/activation.ipynb", + "sha256": "77a3b1205176c63afac09b1db5729dbf6118bd555bb3be84257fba6930a5f5a5", + "language": "Jupyter", + "lines": 36, + "truncated": false, + "block": 1, + "row": 1685 + }, + { + "path": "docs/source/tutorial/python/callbacks.ipynb", + "sha256": "79f8e2520bd0cd33b5ad6c69283dd112fce4d498cfa989523305144624fce1fd", + "language": "Jupyter", + "lines": 72, + "truncated": false, + "block": 1, + "row": 1754 + }, + { + "path": "docs/source/tutorial/python/data/dataloaders.ipynb", + "sha256": "072944706d2f2d38405980b8a6583eb8ec81f47e15e08d13b9e0314a25cc7f92", + "language": "Jupyter", + "lines": 117, + "truncated": false, + "block": 1, + "row": 1773 + }, + { + "path": "docs/source/tutorial/python/data/datapoints.ipynb", + "sha256": "f61e5786f8f14dd1fce2b30766f6a19d226b4f1296dcb19c01eb8c5b86f39e2e", + "language": "Jupyter", + "lines": 133, + "truncated": false, + "block": 1, + "row": 1785 + }, + { + "path": "docs/source/tutorial/python/data/datasets.ipynb", + "sha256": "8a7d3674f4552baa22fdb83204fa032d00bd0096613773946a88719b4f34c21f", + "language": "Jupyter", + "lines": 140, + "truncated": false, + "block": 1, + "row": 1810 + }, + { + "path": "docs/source/tutorial/python/data/splitting.ipynb", + "sha256": "48ad8f9a625e18a518d083fb8f55da0f3ee8ddd80159d4625acaf74970d09c3e", + "language": "Jupyter", + "lines": 147, + "truncated": false, + "block": 1, + "row": 1816 + }, + { + "path": "docs/source/tutorial/python/ensembling.ipynb", + "sha256": "a1f23162c7d7b5b0225e7e976ec383b037bf66675671279c8fa275b735d37131", + "language": "Jupyter", + "lines": 46, + "truncated": false, + "block": 1, + "row": 1689 + }, + { + "path": "docs/source/tutorial/python/featurizers/atom_featurizers.ipynb", + "sha256": "1988de89f63df63ff425287a5ccb74d734dc6cfa3fd0be8f24a578f4419956ca", + "language": "Jupyter", + "lines": 127, + "truncated": false, + "block": 1, + "row": 1750 + }, + { + "path": "docs/source/tutorial/python/featurizers/bond_featurizers.ipynb", + "sha256": "6b24758325d61cc16d1360e3d32a98dc0054a4dcd326dbdd889e528372c11ce3", + "language": "Jupyter", + "lines": 68, + "truncated": false, + "block": 1, + "row": 1695 + }, + { + "path": "docs/source/tutorial/python/featurizers/molecule_featurizers.ipynb", + "sha256": "62e7872cf9d6257a92e6ae11d0ccfd987e88a5780638e1a7c48e4931f88d2979", + "language": "Jupyter", + "lines": 100, + "truncated": false, + "block": 1, + "row": 1768 + }, + { + "path": "docs/source/tutorial/python/featurizers/molgraph_molecule_featurizer.ipynb", + "sha256": "71536bc25a01871b65ff46425fd6554deb90992e66270be4e4a16480518e972e", + "language": "Jupyter", + "lines": 101, + "truncated": false, + "block": 1, + "row": 1786 + }, + { + "path": "docs/source/tutorial/python/featurizers/molgraph_reaction_featurizer.ipynb", + "sha256": "677cfd61eb69e386f381a83163caf2191f8cfcd913a20fdbf80cd3522f1696e7", + "language": "Jupyter", + "lines": 69, + "truncated": false, + "block": 1, + "row": 1716 + }, + { + "path": "docs/source/tutorial/python/loss_functions.ipynb", + "sha256": "7392d6486806558e946dace0eb27f2c041c1f8ae31b42cab578dfa87913fd014", + "language": "Jupyter", + "lines": 205, + "truncated": false, + "block": 1, + "row": 1890 + }, + { + "path": "docs/source/tutorial/python/metrics.ipynb", + "sha256": "0ec76ee21c68aa80cdf7bc636db5912b0cd4cf8d96de35db85a55ceb35aefaf5", + "language": "Jupyter", + "lines": 208, + "truncated": false, + "block": 1, + "row": 1883 + }, + { + "path": "docs/source/tutorial/python/models/aggregation.ipynb", + "sha256": "a4863851aa6e74f73ced12a4173300f10d20f1b244c61399c21a04b032b963ea", + "language": "Jupyter", + "lines": 65, + "truncated": false, + "block": 1, + "row": 1707 + }, + { + "path": "docs/source/tutorial/python/models/basic_mpnn_model.ipynb", + "sha256": "b1d33430dd34703ca35a8b50fc16459b16ff415a3f11934acd5ed02b384a6767", + "language": "Jupyter", + "lines": 89, + "truncated": false, + "block": 1, + "row": 1746 + }, + { + "path": "docs/source/tutorial/python/models/message_passing.ipynb", + "sha256": "660ff1377900d8c9519fa90cc23986f1ad436bc5d46f012297c9b9b322f8239e", + "language": "Jupyter", + "lines": 85, + "truncated": false, + "block": 1, + "row": 1749 + }, + { + "path": "docs/source/tutorial/python/models/multicomponent_mpnn_model.ipynb", + "sha256": "c96ca22b10d83a86a0e1d2bbdddeba4e2dab9a8110cce7cb0951a270549a4275", + "language": "Jupyter", + "lines": 63, + "truncated": false, + "block": 1, + "row": 1708 + }, + { + "path": "docs/source/tutorial/python/models/predictor.ipynb", + "sha256": "ef9fb195cfc2e5fff3651e81d42c5609329ede224e51a2684226fbde0273129a", + "language": "Jupyter", + "lines": 138, + "truncated": false, + "block": 1, + "row": 1783 + }, + { + "path": "docs/source/tutorial/python/saving_and_loading.ipynb", + "sha256": "75a5a3c06934b4911b4066310bd3e1ef5ef43a450b10a3396cc8e96ac5e1b577", + "language": "Jupyter", + "lines": 67, + "truncated": false, + "block": 1, + "row": 1713 + }, + { + "path": "docs/source/tutorial/python/scaling.ipynb", + "sha256": "d29ea27cf82cdad5993521cca9cbd7d6619adc3e3c6cb310e6f73cb383cca28c", + "language": "Jupyter", + "lines": 137, + "truncated": false, + "block": 1, + "row": 1835 + }, + { + "path": "examples/active_learning.ipynb", + "sha256": "d67e4c5ee78af6530f42f81a3d4efb5db3557a0eddb9f2b14bd217515736c060", + "language": "Jupyter", + "lines": 190, + "truncated": false, + "block": 1, + "row": 1857 + }, + { + "path": "examples/chemeleon_foundation_finetuning.ipynb", + "sha256": "07402e9708ddb6347e5fefcdf523ffb059722700688aff4c648281083eb9de78", + "language": "Jupyter", + "lines": 145, + "truncated": false, + "block": 1, + "row": 1849 + }, + { + "path": "examples/constrained_mol_atom_bond.ipynb", + "sha256": "8f5d79bf0a6174d9b429b86cfa302ca12bc8f07cf95bf804be01dd6e05196376", + "language": "Jupyter", + "lines": 219, + "truncated": false, + "block": 1, + "row": 1848 + }, + { + "path": "examples/convert_v1_to_v2.ipynb", + "sha256": "2052ae01ad772d59c8a2ca52079af012268f9e50f14b8832d3ff20cfc64f14ca", + "language": "Jupyter", + "lines": 90, + "truncated": false, + "block": 1, + "row": 1706 + }, + { + "path": "examples/extra_features_descriptors.ipynb", + "sha256": "15315955a8d3313a20b53662db38eeff6c5a3881bfdbb7fb28c1163b8897c6ec", + "language": "Jupyter", + "lines": 293, + "truncated": false, + "block": 1, + "row": 1929 + }, + { + "path": "examples/hpopting.ipynb", + "sha256": "c3337152ebbd8ea20aac2e9bdde8aa8f52129dc1f288eaa27873b4f518be96d7", + "language": "Jupyter", + "lines": 320, + "truncated": false, + "block": 1, + "row": 1899 + }, + { + "path": "examples/interpreting_monte_carlo_tree_search.ipynb", + "sha256": "c5f5a0fec87ba791828010304a8b9e6da55ac3e96fc42bac5e613554e79d250d", + "language": "Jupyter", + "lines": 571, + "truncated": false, + "block": 1, + "row": 1983 + }, + { + "path": "examples/interpreting_with_myerson_values.ipynb", + "sha256": "d1c5804679c7161916acb3177f595b95468add39a48d026d2dc4f8be30487864", + "language": "Jupyter", + "lines": 72, + "truncated": false, + "block": 1, + "row": 1757 + }, + { + "path": "examples/mol_atom_bond.ipynb", + "sha256": "045e3264305d259fbacca8d9b9722479b302fd17f2ed668de15aacdfb2c003fc", + "language": "Jupyter", + "lines": 366, + "truncated": false, + "block": 1, + "row": 1946 + }, + { + "path": "examples/mpnn_fingerprints.ipynb", + "sha256": "016900567d8b03e041191cc81953569e6ab5eae866779c752c5ee118f16a3135", + "language": "Jupyter", + "lines": 146, + "truncated": false, + "block": 1, + "row": 1751 + }, + { + "path": "examples/multi_task.ipynb", + "sha256": "ceef1af1e8c837b302d9450a698724425df27f08284ac0f424556a482b60a334", + "language": "Jupyter", + "lines": 95, + "truncated": false, + "block": 1, + "row": 1719 + }, + { + "path": "examples/predicting.ipynb", + "sha256": "33deb3d6c2b8eda80e87f18efd314c1ee69c5130ae87f17977b2242e57f72670", + "language": "Jupyter", + "lines": 99, + "truncated": false, + "block": 1, + "row": 1710 + }, + { + "path": "examples/predicting_regression_multicomponent.ipynb", + "sha256": "8d32321dd421ca0dc0e5f01eeb728154f437619d165bb16341c0d13b6e2c8798", + "language": "Jupyter", + "lines": 107, + "truncated": false, + "block": 1, + "row": 1723 + }, + { + "path": "examples/predicting_regression_reaction.ipynb", + "sha256": "4be88d3f538316944deb0df561778a9c67ee1d9dd634ef4794f0e2da0cde0bb3", + "language": "Jupyter", + "lines": 100, + "truncated": false, + "block": 1, + "row": 1717 + }, + { + "path": "examples/rigr_featurizer.ipynb", + "sha256": "80c81e438727a62755b2ad52332f4aaf44f7eda413a8c4d74299b8288ca47b36", + "language": "Jupyter", + "lines": 171, + "truncated": false, + "block": 1, + "row": 1873 + }, + { + "path": "examples/shapley_value_with_customized_featurizers.ipynb", + "sha256": "4f2758db3225e7e00010508ea12cc9fdc3cacfca420f9c67496cd0de0bb30017", + "language": "Jupyter", + "lines": 705, + "truncated": false, + "block": 1, + "row": 2023 + }, + { + "path": "examples/training.ipynb", + "sha256": "7b304ea8dfb472efbeb380c368a95bf7b1e4405e8787bbebf9c75a613305d62f", + "language": "Jupyter", + "lines": 248, + "truncated": false, + "block": 1, + "row": 1859 + }, + { + "path": "examples/training_NLogProbEnrichment.ipynb", + "sha256": "40bb261c9dd880ce395bb498780f205c7a2315fcaa21ff4279e075af83490c8b", + "language": "Jupyter", + "lines": 180, + "truncated": false, + "block": 1, + "row": 1823 + }, + { + "path": "examples/training_classification.ipynb", + "sha256": "b705431c930f8bbdb771859f53c32977e26f2bcb248a2865443f74bdcfb3b792", + "language": "Jupyter", + "lines": 204, + "truncated": false, + "block": 1, + "row": 1807 + }, + { + "path": "examples/training_regression_multicomponent.ipynb", + "sha256": "e9735ad779edbed5d803d396093d5a9cbd67c5647057d054aa8de2436b205ded", + "language": "Jupyter", + "lines": 187, + "truncated": false, + "block": 1, + "row": 1792 + }, + { + "path": "examples/training_regression_reaction.ipynb", + "sha256": "1034779b579d0c16208c2020d59f5096e43ee7154ca3c35fdaba5da80ea8fcec", + "language": "Jupyter", + "lines": 192, + "truncated": false, + "block": 1, + "row": 1784 + }, + { + "path": "examples/transfer_learning.ipynb", + "sha256": "a75da57b798baf3753f994f5aa425958c00da4e5e40c581716ca70fed5753309", + "language": "Jupyter", + "lines": 212, + "truncated": false, + "block": 1, + "row": 1843 + }, + { + "path": "examples/uncertainty.ipynb", + "sha256": "537cafd829fe84fcc87f9680dc4d2bce36f5b38436f5c8ae3ad121bfb1890df3", + "language": "Jupyter", + "lines": 321, + "truncated": false, + "block": 1, + "row": 1874 + }, + { + "path": "examples/use_featurizer_with_other_libraries.ipynb", + "sha256": "90e5887bdeef01332188f513684b9911acd088a66dc956743b0add5597415292", + "language": "Jupyter", + "lines": 149, + "truncated": false, + "block": 1, + "row": 1765 + }, + { + "path": "requirements/get_requirements.sh", + "sha256": "fe4745728bcaeeecf801a3f5911135091a3c14b5bcb28faaa94726c003d9cd30", + "language": "Shell", + "lines": 87, + "truncated": false, + "block": 1, + "row": 11699 + }, + { + "path": "tests/cli/test_cli_MAB.py", + "sha256": "ec9f4de5bd1b24af188e3237dd29bf1e2e1afd064db540f635cdb7803ed5a478", + "language": "Python", + "lines": 1170, + "truncated": false, + "block": 1, + "row": 9585 + }, + { + "path": "tests/cli/test_cli_callback.py", + "sha256": "cb993b205ec6812312fa7c48a70a7569fe0e6d93247984690456aaf1028d9129", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 1, + "row": 6402 + }, + { + "path": "tests/cli/test_cli_classification_mol.py", + "sha256": "4e2fea7bcc3b5f18f20ad8de70ad25e72c97f6bc1f5542b57eec8831fd4c8994", + "language": "Python", + "lines": 284, + "truncated": false, + "block": 1, + "row": 7900 + }, + { + "path": "tests/cli/test_cli_classification_mol_multiclass.py", + "sha256": "b0eeac6ffe9a5b836d0c1dbc00cffc80837185daf68e72161237fb2cdd0f2059", + "language": "Python", + "lines": 246, + "truncated": false, + "block": 1, + "row": 7661 + }, + { + "path": "tests/cli/test_cli_regression_mol+mol.py", + "sha256": "bfe657ad0fb8f12a4ee0ef5e478f0984085f9039ac540d7aa642a41fe97c0a90", + "language": "Python", + "lines": 295, + "truncated": false, + "block": 1, + "row": 7950 + }, + { + "path": "tests/cli/test_cli_regression_mol.py", + "sha256": "95b4485cca38da4afafdf30ffab54398d7a36011cca4f4d62a35445f874d9392", + "language": "Python", + "lines": 1017, + "truncated": false, + "block": 1, + "row": 9459 + }, + { + "path": "tests/cli/test_cli_regression_mol_multitask.py", + "sha256": "b305ee5211eeab201dc18b6ed6c395e7385ce8e606bf13371fe918edc0b35eb3", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 1, + "row": 6042 + }, + { + "path": "tests/cli/test_cli_regression_rxn+mol.py", + "sha256": "1b475599246af53e44ef139d0c7d4d025ad28e249e6ce9e70fa955f13fb43224", + "language": "Python", + "lines": 172, + "truncated": false, + "block": 1, + "row": 7168 + }, + { + "path": "tests/cli/test_cli_regression_rxn.py", + "sha256": "e4adc1e9a5439cec29668a85acdae5398de3c9b9d0a243f7e5527b35a3ba25dd", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 1, + "row": 6372 + }, + { + "path": "tests/cli/test_cli_utils.py", + "sha256": "c9d2ba175901b90072e7a5e7ffa01dff2c686cb1f896e847392deca8af32b734", + "language": "Python", + "lines": 240, + "truncated": false, + "block": 1, + "row": 7855 + }, + { + "path": "tests/cli/test_parsing.py", + "sha256": "855de134e0419f9e3bd5c980c7ff32bc8b4a5f7fb050c67b0e967e7173e07a64", + "language": "Python", + "lines": 210, + "truncated": false, + "block": 1, + "row": 7724 + }, + { + "path": "tests/conftest.py", + "sha256": "ae7bc7fd7855e615531c14f45487d4187c2b4236707827cf7d7ed0ecdb75d106", + "language": "Python", + "lines": 174, + "truncated": false, + "block": 1, + "row": 7312 + }, + { + "path": "tests/data/mol_atom_bond/make_molatombond_data.ipynb", + "sha256": "065e9a5fa1994084dcebb6f28c6e9b1d79386d85099cafb614c1e82729346412", + "language": "Jupyter", + "lines": 246, + "truncated": false, + "block": 1, + "row": 1865 + }, + { + "path": "tests/data/mol_atom_bond/regenerate_models.sh", + "sha256": "ecc74d5e12fc3231aeff8ba5d3d6a87cade485364cdccae4a1a3c27c1ebaa937", + "language": "Shell", + "lines": 76, + "truncated": false, + "block": 1, + "row": 11735 + }, + { + "path": "tests/integration/conftest.py", + "sha256": "a64b6a29a6b39a0d05dcde0faab1971fcf68f1b0e9cde775d81ed79be7229999", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 1, + "row": 6588 + }, + { + "path": "tests/integration/test_bounded_MAB.py", + "sha256": "817a62055cc69f93aa6cdec2d298771ff3a6bf17a120d4edfe7ad78cd813fa9a", + "language": "Python", + "lines": 130, + "truncated": false, + "block": 1, + "row": 7335 + }, + { + "path": "tests/integration/test_classification_MAB.py", + "sha256": "31421cfcc6dc64102169636078a71a9460ade8bae86c6878901738c9710519b1", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 1, + "row": 6870 + }, + { + "path": "tests/integration/test_classification_mol.py", + "sha256": "a2bf0c59910f89569a4548cdcc1f248977823f68d2b0aa0c28c9d0a0e241a26e", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 1, + "row": 7217 + }, + { + "path": "tests/integration/test_classification_mol_multiclass.py", + "sha256": "836810ec0852436acb8ee6a4c6b397f34c33cd377fb5c6f5181fd3b2b8b34289", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 1, + "row": 7260 + }, + { + "path": "tests/integration/test_export.py", + "sha256": "c87daac065d05c6cd693add4129e7f4321ee9288f8dfe648a40999f9068e04e5", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 1, + "row": 6041 + }, + { + "path": "tests/integration/test_output_transform.py", + "sha256": "9890e89d78b838983d49931c9d2056c8ef24a8cca1839694279afee2a66cedf5", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 1, + "row": 6368 + }, + { + "path": "tests/integration/test_regression_MAB.py", + "sha256": "92c022de5e2fea565bb886f03f31628be65c2eb48b5b050c49b901ebeda1c20d", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 1, + "row": 6852 + }, + { + "path": "tests/integration/test_regression_mol+mol.py", + "sha256": "16f050a71b2f65bad8344d9b3319cac60fa81e97b95d583a0095e4262172f72d", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 1, + "row": 6375 + }, + { + "path": "tests/integration/test_regression_mol.py", + "sha256": "29a076c73def7d9eb5c269fa88b4929ae25008b50b9e40f5b1d3ebcce021f8d4", + "language": "Python", + "lines": 226, + "truncated": false, + "block": 1, + "row": 7968 + }, + { + "path": "tests/integration/test_regression_rxn+mol.py", + "sha256": "4469367579feb974bd815da44f996594f75da83e83763ae7d805f978e9eaf6de", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 1, + "row": 6463 + }, + { + "path": "tests/integration/test_regression_rxn.py", + "sha256": "a1420f0131577b700d96cefcf1b5aff00a2d5cb8a1852e55f27d954a8ad45cf6", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 1, + "row": 6322 + }, + { + "path": "tests/integration/test_subsets_MAB.py", + "sha256": "69efac377e3b1462bef5b087b7b6228864ee9d4c95a206d4f0de3711439c387b", + "language": "Python", + "lines": 196, + "truncated": false, + "block": 1, + "row": 7767 + }, + { + "path": "tests/regenerate_models.sh", + "sha256": "2eab5a8cf73cb5b5ab25f93c6cefec1e47484bd7065e82afa3b45f074dd27d7c", + "language": "Shell", + "lines": 123, + "truncated": false, + "block": 1, + "row": 11739 + }, + { + "path": "tests/unit/cli/test_process_ffn_hidden_dims.py", + "sha256": "63dbf7f7743fb6d59d824656007f9077b7692adbfb1eea6f3b0d02db3855eabe", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 1, + "row": 6945 + }, + { + "path": "tests/unit/cli/test_validate_train_args.py", + "sha256": "9068d792d0caa9efc55d14c37ad6495dd11f75c90daa5d99a4d14dcdb2a59f37", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 1, + "row": 6271 + }, + { + "path": "tests/unit/data/test_MAB_dataset.py", + "sha256": "630fbf96d416dc90007c68ac6a340890e94ce3ef9df5306385adcf4325fc2ea7", + "language": "Python", + "lines": 154, + "truncated": false, + "block": 1, + "row": 7536 + }, + { + "path": "tests/unit/data/test_data_utils.py", + "sha256": "083b843615828417b9172ed5035bddbf34169ca30975589e2e85a2ea6c0c745e", + "language": "Python", + "lines": 158, + "truncated": false, + "block": 1, + "row": 7716 + }, + { + "path": "tests/unit/data/test_dataloader.py", + "sha256": "d8792294781d99b0be9960d75c38471710e3d5d52cceef3d6e92c53b22cadf5a", + "language": "Python", + "lines": 268, + "truncated": false, + "block": 1, + "row": 8508 + }, + { + "path": "tests/unit/data/test_datapoint.py", + "sha256": "a41c0507b47d38a4d6d944cfc29f30bcbcc78030e632bae132b4f79203afd900", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 1, + "row": 6230 + }, + { + "path": "tests/unit/data/test_dataset.py", + "sha256": "d765c41f245ca59fb3ed91e86f5ae2c1330f5df4f929db7631d07aacc6ef445d", + "language": "Python", + "lines": 205, + "truncated": false, + "block": 1, + "row": 7769 + }, + { + "path": "tests/unit/data/test_samplers.py", + "sha256": "b3d11337d450472a01c48aafc47897d9ff8a22df9796fd32562c45f66b5f06a8", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 1, + "row": 6695 + }, + { + "path": "tests/unit/featurizers/test_atom.py", + "sha256": "ae67ed5aecd87b607cbf58ec4074ceb39badfdc44a71176db0367eaada839c9d", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 1, + "row": 7076 + }, + { + "path": "tests/unit/featurizers/test_bond.py", + "sha256": "0d8acc665a931f9590f922acee38f04434bdcd13621522e0a44e12d25287ec27", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 1, + "row": 6297 + }, + { + "path": "tests/unit/featurizers/test_cgr.py", + "sha256": "bd87da79f003f87c2b6d34722fa619b73af67827976669a6458c9df8b85866c8", + "language": "Python", + "lines": 408, + "truncated": false, + "block": 1, + "row": 8990 + }, + { + "path": "tests/unit/featurizers/test_cuikmolmaker.py", + "sha256": "55912967c21c25f27d063dfdbfd7241ff00cea98629f9561f38fea36eea48a31", + "language": "Python", + "lines": 144, + "truncated": false, + "block": 1, + "row": 7452 + }, + { + "path": "tests/unit/featurizers/test_cuikmolmaker_reaction.py", + "sha256": "4d15e5cce245f1dc73c79c5c9f1995ae3c4ed26db1975375fb91bc8c6f132e05", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 1, + "row": 6718 + }, + { + "path": "tests/unit/featurizers/test_molecule.py", + "sha256": "145ff806c6a3fca44b88dee2d2a4eee996d4953df5e6d48670dae9867a475e2a", + "language": "Python", + "lines": 238, + "truncated": false, + "block": 1, + "row": 8908 + }, + { + "path": "tests/unit/featurizers/test_molgraph.py", + "sha256": "bf59c656be093c8bed7842489c1a69a7368a8548e09a45a07b486bd45b2be932", + "language": "Python", + "lines": 115, + "truncated": false, + "block": 1, + "row": 6886 + }, + { + "path": "tests/unit/models/test_mol_atom_bond.py", + "sha256": "a9cd1976c4f8185e53021442bc724f70e620ec3ec32df381e5de106d61a2bb94", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 1, + "row": 5958 + }, + { + "path": "tests/unit/nn/test_constrainer.py", + "sha256": "5a0cfb7f24f9d7b304e4f9f23c91c7cfeb7c840a4127d42b41585d6dee574152", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 1, + "row": 5669 + }, + { + "path": "tests/unit/nn/test_ffn.py", + "sha256": "89149aef17a76ed0d28b0d37fec543ceb9ca9a2fb9daaff2fcf336cdf954eef6", + "language": "Python", + "lines": 151, + "truncated": false, + "block": 1, + "row": 7720 + }, + { + "path": "tests/unit/nn/test_loss_functions.py", + "sha256": "9ed1e1a8ee4b553e190c6cfcf095a28b3c69796f07009baab11b60a91c8aef28", + "language": "Python", + "lines": 764, + "truncated": false, + "block": 1, + "row": 9578 + }, + { + "path": "tests/unit/nn/test_message_passing.py", + "sha256": "cd4222c148b378ecce2cbfaff81a05a3f1dc52dca5e7e5dfc9c832b786a1bd75", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 1, + "row": 6094 + }, + { + "path": "tests/unit/nn/test_metrics.py", + "sha256": "b574f599357ad43d00415625e607abb5ef39dca7581328c60b11ab4f4ee0c2da", + "language": "Python", + "lines": 278, + "truncated": false, + "block": 1, + "row": 8699 + }, + { + "path": "tests/unit/nn/test_transforms.py", + "sha256": "1801564019900a607484fde384641ee43d6363928afcfb43e7a096e6379b1f5b", + "language": "Python", + "lines": 156, + "truncated": false, + "block": 1, + "row": 7170 + }, + { + "path": "tests/unit/uncertainty/test_calibrators.py", + "sha256": "0d2fa7f0b66aa35c58fb6f6340e4bc9b9dd604b557176944a64df863e174cb21", + "language": "Python", + "lines": 376, + "truncated": false, + "block": 1, + "row": 8826 + }, + { + "path": "tests/unit/uncertainty/test_estimators.py", + "sha256": "a63b1815b6cc0d1ad45edf08d61697aa5d95072de52d1b9e41a7435ecfc8d5c4", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 1, + "row": 7590 + }, + { + "path": "tests/unit/uncertainty/test_evaluators.py", + "sha256": "e082661fa14c8d2fb764348fa23dbbebb2cc013afb4f859bd739a0405b691c00", + "language": "Python", + "lines": 277, + "truncated": false, + "block": 1, + "row": 8233 + }, + { + "path": "tests/unit/utils/test_converter.py", + "sha256": "bd18ddf8f2126fb7fee2638bec5a40f7b895727e3f92c4d380285fe55ee6e849", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 1, + "row": 6464 + }, + { + "path": "tests/unit/utils/test_multiprocess.py", + "sha256": "47923536430140929e45ae950d81ec4a08c0b10853626cf60ae1ec14aed28314", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 1, + "row": 6080 + }, + { + "path": "tests/unit/utils/test_save_load_mol+mol.py", + "sha256": "d231027d8d83b0c834954fd96f08ea621f36e81fc88ad7c4ec675c757f48ecba", + "language": "Python", + "lines": 192, + "truncated": false, + "block": 1, + "row": 7862 + }, + { + "path": "tests/unit/utils/test_save_load_mol.py", + "sha256": "daefe6b1271949a7db5616bae6fa2889949629e066c06d2c8b3798f19113475c", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 1, + "row": 7363 + }, + { + "path": "tests/unit/utils/test_utils.py", + "sha256": "af2c482007a94463dd9e7dc371e171d7ebd8919f4ae476f96d8bff04586aebd9", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 1, + "row": 6466 + } + ] +} \ No newline at end of file diff --git a/manifests/3c/github.com__syrte__ndtest.json b/manifests/3c/github.com__syrte__ndtest.json new file mode 100644 index 0000000000000000000000000000000000000000..f8a5556569c824375f6cf72eb85e9f00eae299e3 --- /dev/null +++ b/manifests/3c/github.com__syrte__ndtest.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/syrte/ndtest", + "url": "https://github.com/syrte/ndtest", + "host": "github.com", + "commit": "cac1ac875b1bfdbd406004c1d651803e66fa8c6e", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "f33aec8a4d4f85b67a05eeb128596dda76aa0d669acf4b1fc7307acd7e6af771", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1121 + }, + { + "path": "README.md", + "sha256": "cf9f95e839f664cc253798020408ceaef282eec9ad9bfe027315fc1bf0828a0f", + "language": "Text", + "lines": 52, + "truncated": false, + "block": 2, + "row": 2605 + }, + { + "path": "__init__.py", + "sha256": "b881fe3448d14653afafbae882b3b5a5e83861b5ae84c286054d1d62636b3f2b", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 2, + "row": 1602 + }, + { + "path": "ndtest.py", + "sha256": "f3c81f656981ea6d609d077800e9438b98ed1c26b67c265d03ceb56a5cf2c820", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 2, + "row": 1939 + }, + { + "path": "setup.py", + "sha256": "93af5a8cb9b5ce734b0b59108653d042c338fef95edb27b0cf9f75377a7fb9d5", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 2, + "row": 1691 + } + ] +} \ No newline at end of file diff --git a/manifests/3c/github.com__zixuans__survnet.json b/manifests/3c/github.com__zixuans__survnet.json new file mode 100644 index 0000000000000000000000000000000000000000..47331168c3b5397bead4d17bebc152cc9f2ccf51 --- /dev/null +++ b/manifests/3c/github.com__zixuans__survnet.json @@ -0,0 +1,183 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/zixuans/survnet", + "url": "https://github.com/zixuans/SurvNet", + "host": "github.com", + "commit": "60236b3fe78a8242bff931f58f0f08f7234b49fb", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Comparisons with knockoffs/Scenario 3/linear.py", + "sha256": "57144c9ce7e223a75b37653a963a5047bd63611150879d36edbfa9ac0fe993fc", + "language": "Python", + "lines": 322, + "truncated": false, + "block": 1, + "row": 8725 + }, + { + "path": "Comparisons with knockoffs/Scenario 3/nonlinear.py", + "sha256": "b86648878dfc1d8ef7bdf20c051ef0c6ae5f1710521c9b67c1b9469a58bb39a4", + "language": "Python", + "lines": 323, + "truncated": false, + "block": 1, + "row": 8730 + }, + { + "path": "Comparisons with knockoffs/Scenario 4/sampler.py", + "sha256": "5451c3274f00bc02ac31c183b41835aa82f3e06048228b17ee84e585b2013d5f", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 1, + "row": 6551 + }, + { + "path": "Comparisons with knockoffs/Scenarios 1 and 2/deep_knockoffs.py", + "sha256": "4673fe61397f2c3a766454441bf766d53db9d97ad8e7fcbf67821471af2698fe", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 1, + "row": 6468 + }, + { + "path": "Comparisons with knockoffs/Scenarios 1 and 2/onestep_knockoff.py", + "sha256": "2c0e4e1ccb7d4f665cfb1a4205109752efea401f90e46fa22bf73e13906b0311", + "language": "Python", + "lines": 376, + "truncated": false, + "block": 1, + "row": 8968 + }, + { + "path": "Comparisons with knockoffs/Scenarios 1 and 2/second-order_knockoffs.r", + "sha256": "7affabb8662cad4ca3e83d4dc171fd49ecb87b32b49311db9f5f55465de54047", + "language": "R", + "lines": 13, + "truncated": false, + "block": 1, + "row": 9919 + }, + { + "path": "Data/dataset1.py", + "sha256": "159384fabafb203f02b228bf79627f2be1604d305513e1679be50717f1c95699", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 1, + "row": 5800 + }, + { + "path": "Data/dataset2.py", + "sha256": "e5923168c66b4aca980a316650d0054bd416cfe343ddccb900ba27317c2ccc0d", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 1, + "row": 6335 + }, + { + "path": "Data/dataset3.py", + "sha256": "a3f1ecde81ae8b2e4378c8f3b2905120a43a1e9942e37f3ff371c470f41aa483", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 1, + "row": 5845 + }, + { + "path": "Data/dataset4.py", + "sha256": "ee1dc191aa48d68e026e88e580427cafa7e0f3fcf11feae3987111513d9022fd", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 1, + "row": 6122 + }, + { + "path": "Data/dataset5.py", + "sha256": "9b7c81f7d7635e57ada8c9c89e1a57297b46b971a6817642d2e264783f091419", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 1, + "row": 5858 + }, + { + "path": "Data/dataset6/dataset6.R", + "sha256": "c7092e1fccca84dd64af1c86769680d664ad95d9c0f6d472ae898e04d3a414b7", + "language": "R", + "lines": 37, + "truncated": false, + "block": 1, + "row": 10004 + }, + { + "path": "Data/dataset6/dataset6.py", + "sha256": "6ee1d06b99b313d6d3457a8949706d40ea9f25b66e0c2295e0d1342ae084fa34", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 1, + "row": 5512 + }, + { + "path": "LICENSE", + "sha256": "55f330330a8ce45649dabff6b3a2c2d33e495e28bdb4a7d51be336d9861e0007", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2084 + }, + { + "path": "README.md", + "sha256": "c4a25167dcd6194773fc35b925104a932ccecd0322eeaac6275f2b477b1f3989", + "language": "Text", + "lines": 13, + "truncated": false, + "block": 1, + "row": 11814 + }, + { + "path": "SurvNet.py", + "sha256": "f1597965b8c2a7ae00093aa857ad9084855a803e992c3ccd1c828fb3dc185f1e", + "language": "Python", + "lines": 206, + "truncated": false, + "block": 1, + "row": 8482 + }, + { + "path": "initial.py", + "sha256": "5714cf430329ec81cf81fb409025535d0df59b64c1fb814cbab51be1ff639b97", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 1, + "row": 6994 + }, + { + "path": "main.py", + "sha256": "c349fdc982dc46a7bc205f1e8ad8075aaf0a07cfe286c3ffc0449df6446bb4c4", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 1, + "row": 7398 + }, + { + "path": "variable_selection.py", + "sha256": "305941ea4538edf8436005ae443eeb3a27aadc47dfbfd027797eecf36cd2b3f7", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 1, + "row": 7754 + } + ] +} \ No newline at end of file diff --git a/manifests/3e/zenodo__18340856.json b/manifests/3e/zenodo__18340856.json new file mode 100644 index 0000000000000000000000000000000000000000..312fe857e5fac461b01cc81af40b0b0f7a268bd0 --- /dev/null +++ b/manifests/3e/zenodo__18340856.json @@ -0,0 +1,174 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18340856", + "url": "https://doi.org/10.5281/zenodo.18340856", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "zenodo-sciad-share/scripts/analysis-1.py", + "sha256": "5affba74b17b252582fab60162f4fe2ce0aa97084f45c2496a8b82cb6fb463de", + "language": "Python", + "lines": 1762, + "truncated": false, + "block": 1, + "row": 9759 + }, + { + "path": "zenodo-sciad-share/scripts/analysis-2.py", + "sha256": "467a557702ef786de6ea4afff4dd42bc3dc6b690e20c0ef9d8e78583f15e9e99", + "language": "Python", + "lines": 1664, + "truncated": false, + "block": 1, + "row": 9793 + }, + { + "path": "zenodo-sciad-share/scripts/simulation.py", + "sha256": "e96e25d7bf8285016c36575575f4a0fe0eb99c8b3b30f4669fb691510955f0fc", + "language": "Python", + "lines": 635, + "truncated": false, + "block": 1, + "row": 9497 + }, + { + "path": "zenodo-sciad-share/shared_src/decoding_utils.py", + "sha256": "30dba428473fe3e76164df5a1d12b716041fd1a23db2d843452b5adb1f067256", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 1, + "row": 6872 + }, + { + "path": "zenodo-sciad-share/shared_src/fig_utils.py", + "sha256": "4e59a23afc16dec391ef8b1591852abde40495eaa1f007bef09b5b7cb346a6b2", + "language": "Python", + "lines": 184, + "truncated": false, + "block": 1, + "row": 7508 + }, + { + "path": "zenodo-sciad-share/shared_src/figure/color.py", + "sha256": "b19e15e9cfcdfee4826087980e022c8bf146b5e335e82c6da99e663007f09541", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 1, + "row": 6674 + }, + { + "path": "zenodo-sciad-share/shared_src/figure/ratinabox_utils.py", + "sha256": "72b24d7d9d3fba4401fc2a1c94bba2d42902edab59249ef3756963ba02293585", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 1, + "row": 7132 + }, + { + "path": "zenodo-sciad-share/shared_src/figure/trajectory.py", + "sha256": "15231402f77e24f32446fc1bacf363a6d59cc82cec03b0eae5c300c6ec82ba4e", + "language": "Python", + "lines": 1175, + "truncated": false, + "block": 1, + "row": 9758 + }, + { + "path": "zenodo-sciad-share/shared_src/figure/utils.py", + "sha256": "b977b1ba1dd9513d4db28a3a3daa8c941d7453ef7de442f1b724a3456bfb1274", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 1, + "row": 7246 + }, + { + "path": "zenodo-sciad-share/shared_src/kalmax_utils.py", + "sha256": "fd424261e83362880c91cf67b8d90d7ca3947ff2b645d46f72d4c5ef524acac4", + "language": "Python", + "lines": 714, + "truncated": false, + "block": 1, + "row": 9555 + }, + { + "path": "zenodo-sciad-share/shared_src/kde.py", + "sha256": "776572f713d6eef4bebc050437e6019387aa667853baade0ddb117e2ab31c188", + "language": "Python", + "lines": 570, + "truncated": false, + "block": 1, + "row": 9412 + }, + { + "path": "zenodo-sciad-share/shared_src/kde_fast.py", + "sha256": "3a985b5e07bd30f4d13bf0a4172b33e2528a860a76554bf569cef13deac352d8", + "language": "Python", + "lines": 527, + "truncated": false, + "block": 1, + "row": 9193 + }, + { + "path": "zenodo-sciad-share/shared_src/linearlize.py", + "sha256": "eb71b869a35457faa88f081227fa121a5d8a0f3cfa16440bd4e56c65b986bf37", + "language": "Python", + "lines": 287, + "truncated": false, + "block": 1, + "row": 8548 + }, + { + "path": "zenodo-sciad-share/shared_src/ratinabox_utils.py", + "sha256": "5e66735a62aaf17b8b9bfa6520ecccf3c47ae554495557e2045bd73be2899719", + "language": "Python", + "lines": 314, + "truncated": false, + "block": 1, + "row": 8934 + }, + { + "path": "zenodo-sciad-share/shared_src/spike_autocorrelation.py", + "sha256": "67cd6bb3668be42085d1703fd0591ce024e8fe664d2ff20e0558df276b57c9d2", + "language": "Python", + "lines": 156, + "truncated": false, + "block": 1, + "row": 7396 + }, + { + "path": "zenodo-sciad-share/shared_src/utils.py", + "sha256": "2016ea64318ad266e4635d35f4644f3da121357fa7115e70de679ab2c924a19d", + "language": "Python", + "lines": 285, + "truncated": false, + "block": 1, + "row": 8409 + }, + { + "path": "zenodo-sciad-share/src/dataset.py", + "sha256": "08a838caa3b957031231b7d1bdac705719de06d7120b4086e0a3892a640e579b", + "language": "Python", + "lines": 511, + "truncated": false, + "block": 1, + "row": 9196 + }, + { + "path": "zenodo-sciad-share/src/figure/ds_fig.py", + "sha256": "03785c48e0c5f9f4bc8eb67a8e7d0b445764ccbe8e8c163231cfbe8eac2f752e", + "language": "Python", + "lines": 275, + "truncated": false, + "block": 1, + "row": 8204 + } + ] +} \ No newline at end of file diff --git a/manifests/3f/github.com__hoangducquy93__lens.json b/manifests/3f/github.com__hoangducquy93__lens.json new file mode 100644 index 0000000000000000000000000000000000000000..ae32cae7c25fafd0750f07a78110f640b835611f --- /dev/null +++ b/manifests/3f/github.com__hoangducquy93__lens.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/hoangducquy93/lens", + "url": "https://github.com/hoangducquy93/LENS", + "host": "github.com", + "commit": "1957ecd2802772dd8dc7d9b3768de5e514c51bd0", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "c71d239df91726fc519c6eb72d318ec65820627232b2f796219e87dcf35d0ab4", + "language": "License", + "lines": 201, + "truncated": false, + "block": 1, + "row": 2216 + }, + { + "path": "README.md", + "sha256": "5d2751d9553bd2fcaef0b0a1b10c79b01a2de67a033e469024ebfbbfbcd9929d", + "language": "Text", + "lines": 64, + "truncated": false, + "block": 1, + "row": 11818 + } + ] +} \ No newline at end of file diff --git a/manifests/3f/zenodo__21501659.json b/manifests/3f/zenodo__21501659.json new file mode 100644 index 0000000000000000000000000000000000000000..424a7bc37e7cd489c1443ef3e9ade1b41b03a1cb --- /dev/null +++ b/manifests/3f/zenodo__21501659.json @@ -0,0 +1,174 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:21501659", + "url": "https://doi.org/10.5281/zenodo.21501659", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "80fea93cd8f2ab834a29e01451a6f846091e337f5f8b4c871f584ea97d15d146", + "language": "License", + "lines": 26, + "truncated": false, + "block": 1, + "row": 2168 + }, + { + "path": "README.md", + "sha256": "d590ee7781b9c180d7aa0c4e29737723bc7ea8ed8fb2ee7936ce52f3c9eab7de", + "language": "Text", + "lines": 134, + "truncated": false, + "block": 1, + "row": 11927 + }, + { + "path": "experiments/Hard_Mode/Harder_Mode_Hide_The_Label.py", + "sha256": "d9dfd29ce7789b4ce533e739a4e6fb0ba40fa4acefb27c737f0ae7ae01523a82", + "language": "Python", + "lines": 757, + "truncated": false, + "block": 1, + "row": 9669 + }, + { + "path": "experiments/Hard_Mode/Harder_Mode_Open_Race.py", + "sha256": "568ec74e3068fa964727b0c2f953a2b448ec62f2070172d09ab8eadef9ab1c35", + "language": "Python", + "lines": 823, + "truncated": false, + "block": 1, + "row": 9683 + }, + { + "path": "experiments/Regular_Mode/Regular_Mode_Hide_The_Label.py", + "sha256": "e3a93e5dfebb82e0c3c9ee14178c132762a6515eb4139573cb359befa9f2f75f", + "language": "Python", + "lines": 1791, + "truncated": false, + "block": 1, + "row": 9846 + }, + { + "path": "experiments/Regular_Mode/Regular_Mode_Open_Race.py", + "sha256": "40c97431ea3253386e5b559d3d54ccfc0e5aba6f1f2a24d9fbd1c239c47a3f8f", + "language": "Python", + "lines": 978, + "truncated": false, + "block": 1, + "row": 9735 + }, + { + "path": "experiments/Visualization_and_Tables/Hide_The_Label_bar_plots.py", + "sha256": "05f208174c260b487555f6eda00bb512e9809e99e7171e6161c113d744bf0692", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 1, + "row": 8086 + }, + { + "path": "experiments/Visualization_and_Tables/Open_Race_best_so_far_plots.py", + "sha256": "1948e907e2140e2ff90a12bdcddb9ad6114a3a82206befb2a2e41da15e080bb3", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 1, + "row": 7685 + }, + { + "path": "experiments/Visualization_and_Tables/statistical_analysis_tables.py", + "sha256": "36d28515f881e2fe46ebd6826aad696edd34640f857b32fd7a50fbfddd0002ae", + "language": "Python", + "lines": 621, + "truncated": false, + "block": 1, + "row": 9528 + }, + { + "path": "main.py", + "sha256": "e681b8ed372f27ecc148d166257d769cbc131b4c39162286fbb3d66633144b08", + "language": "Python", + "lines": 533, + "truncated": false, + "block": 1, + "row": 9305 + }, + { + "path": "reproduce/run_hide_the_label.py", + "sha256": "0881a6df94d224c473b5f4b8d071c95b1387716aede774f2cfa64e8d2c4f7c29", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 1, + "row": 7677 + }, + { + "path": "reproduce/run_open_race.py", + "sha256": "47cb3187d11e1c58bf4c8297018e74282269171d41e4f119779f264cf191fee3", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 1, + "row": 7332 + }, + { + "path": "utils/datasets.py", + "sha256": "5fde24d3b05ff4bc782906582003ecb0cdb7100d688218a6b10de4e4a2f694ea", + "language": "Python", + "lines": 320, + "truncated": false, + "block": 1, + "row": 8760 + }, + { + "path": "utils/harder_surrogates.py", + "sha256": "f6773e158b88fe0a53b26e69de760a6677ecb2908380e04539c58cf35d34d7d4", + "language": "Python", + "lines": 920, + "truncated": false, + "block": 1, + "row": 9707 + }, + { + "path": "utils/open_race_optimizers.py", + "sha256": "15f7edd55febd6c24c2ac2d3b99d6725f9f8fffc61466309f2c8681a4a3ac003", + "language": "Python", + "lines": 344, + "truncated": false, + "block": 1, + "row": 8950 + }, + { + "path": "utils/optimisers_for_harder_open_race.py", + "sha256": "50d38e2707b7f4525458e8a4d9994c534b581acc0b20442e54b1c0f5300da016", + "language": "Python", + "lines": 279, + "truncated": false, + "block": 1, + "row": 8571 + }, + { + "path": "utils/optimizers.py", + "sha256": "72c4816b5113c4e04082d9d452222380c1898efb49b74edaad8fc217a421ff4e", + "language": "Python", + "lines": 1927, + "truncated": false, + "block": 1, + "row": 9844 + }, + { + "path": "utils/sparse_gp_approximations.py", + "sha256": "976229eeb6c5ba7561e6e9c07f0329d3f39d53a99e9fee3cec9c4ceb80d8870a", + "language": "Python", + "lines": 544, + "truncated": false, + "block": 1, + "row": 9372 + } + ] +} \ No newline at end of file diff --git a/manifests/40/github.com__humml-lab__fmri-control.json b/manifests/40/github.com__humml-lab__fmri-control.json new file mode 100644 index 0000000000000000000000000000000000000000..d82c08ba8d0ac767b8790b19b569e735854c94de --- /dev/null +++ b/manifests/40/github.com__humml-lab__fmri-control.json @@ -0,0 +1,300 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/humml-lab/fmri-control", + "url": "https://github.com/humml-lab/fmri-control", + "host": "github.com", + "commit": "59253796ecb10a3adce29d48a7045e073f950335", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "5e621a7d9975a15e5ef857732ac4a9d0796f21401d36bc96d06cfe4c97282fdf", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2147 + }, + { + "path": "README.md", + "sha256": "e62700464984e68d156c9b02cafcdc91c734c864927375711fcb0b2b46ced431", + "language": "Text", + "lines": 36, + "truncated": false, + "block": 1, + "row": 11838 + }, + { + "path": "analyses/analysis_connectivity.ipynb", + "sha256": "461e04285e20a813182f4baadbef096d8bc41828ea4635e5560edc8f5a971b8d", + "language": "Jupyter", + "lines": 613, + "truncated": false, + "block": 1, + "row": 2030 + }, + { + "path": "analyses/analysis_eval_measures.ipynb", + "sha256": "79a073b3641c66c5ac7239050061d0e63c4d4c105b2e3a7781f07bea2ca742f2", + "language": "Jupyter", + "lines": 349, + "truncated": false, + "block": 1, + "row": 1979 + }, + { + "path": "analyses/analysis_optuna.ipynb", + "sha256": "f4bc7311cd335f99e5b006166e3529d060ca28a89d5609ffb83aeb8ef9e2eb23", + "language": "Jupyter", + "lines": 222, + "truncated": false, + "block": 1, + "row": 1885 + }, + { + "path": "analyses/analysis_rnn.ipynb", + "sha256": "387665e77032486cae55e359cc359baf5a1f421ef72366dac3f4bef8f7a4a8e2", + "language": "Jupyter", + "lines": 299, + "truncated": false, + "block": 1, + "row": 1954 + }, + { + "path": "analyses/analysis_simulation.ipynb", + "sha256": "c13f91013e5c9f3a7ad4884bcdf2d926603c84c42f9c5657735aac143863bb5e", + "language": "Jupyter", + "lines": 873, + "truncated": false, + "block": 1, + "row": 2043 + }, + { + "path": "analyses/analysis_utils.py", + "sha256": "d5fb8db3b1b5a22f5d6ded4ed780b6c07d4e942c9c390ee6a508e3380cdb1051", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 1, + "row": 7564 + }, + { + "path": "analyses/spatial_separation.ipynb", + "sha256": "63e4fd78c646825ca96e94b75e9d50eea0e6e13304804f77d3f0bcd1a46390a7", + "language": "Jupyter", + "lines": 508, + "truncated": false, + "block": 1, + "row": 2014 + }, + { + "path": "analyses/spatial_separation/classification_utils.py", + "sha256": "c4bbfe01123486f2a1a98cd1d39592bfa544ad9c874882f3b0700beb8d98998e", + "language": "Python", + "lines": 268, + "truncated": false, + "block": 1, + "row": 8803 + }, + { + "path": "fmri_data/3d_brain.ipynb", + "sha256": "655289c722dec48f09087103327c4490961962549ca2c4854f07c29bd10bf0fd", + "language": "Jupyter", + "lines": 90, + "truncated": false, + "block": 1, + "row": 1740 + }, + { + "path": "src/control/bptt.py", + "sha256": "d78543d38067f4207aa2fbc89ba9d85dc1fd8546cda46c1d0af7da95392da5d7", + "language": "Python", + "lines": 196, + "truncated": false, + "block": 1, + "row": 8547 + }, + { + "path": "src/control/control_utils.py", + "sha256": "4ccad100cd585b3f4344eec08df6e0d93bdc85885d2909b606263860fb285f85", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 1, + "row": 7928 + }, + { + "path": "src/control/main.py", + "sha256": "3fe2c9ef13b74335910ae848f8b6cc232ff9f93b824f842bc6856baa9af2a429", + "language": "Python", + "lines": 130, + "truncated": false, + "block": 1, + "row": 7464 + }, + { + "path": "src/control/models.py", + "sha256": "da0b603280938443165515298ecd00a56214846ddd99d104ccef5c9824663a85", + "language": "Python", + "lines": 201, + "truncated": false, + "block": 1, + "row": 8088 + }, + { + "path": "src/control/ubermain_cont.py", + "sha256": "2948a4a406d743471c0b5bf853c53ad9bc3f3930d3c1e57cfc0e20b0f203518a", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 1, + "row": 6743 + }, + { + "path": "src/evaluation.py", + "sha256": "24f5e429386a1f33abe4fd60123cca63d6797d956c25de12bb84c65f9e07ad45", + "language": "Python", + "lines": 162, + "truncated": false, + "block": 1, + "row": 7811 + }, + { + "path": "src/hyperparameter_search/multitasking.py", + "sha256": "d39a53f95b7d85db961ae49a1633ebe5cd335c780bcae73e34d5e9510043f875", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 1, + "row": 7691 + }, + { + "path": "src/hyperparameter_search/optuna_worker.py", + "sha256": "6a88796d7ee0dc9c2d0b7508cb565b19e42fcd0ff2c7f6f0fdf4c4523e0cfe1f", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 1, + "row": 7361 + }, + { + "path": "src/hyperparameter_search/search_space/optuna_search_space.py", + "sha256": "04854030cb763aa8c2ff0e43382943131be7a51937fd9cc3f7fa971a6152430a", + "language": "Python", + "lines": 115, + "truncated": false, + "block": 1, + "row": 7305 + }, + { + "path": "src/hyperparameter_search/search_space/parameter.py", + "sha256": "66b45d629a2cad7c8ca8bba66d403c248c9d7a877bf4fe5bb6140974968ae3b9", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 1, + "row": 5662 + }, + { + "path": "src/hyperparameter_search/search_space/search_space.py", + "sha256": "609a14752ce07aa8020669b45afdbab4fb4fd36f8878433a2796b0bf5172df77", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 1, + "row": 5506 + }, + { + "path": "src/hyperparameter_search/value_formatter.py", + "sha256": "bc12323b73d386c8e503da3a2585fe3a79bdfd4267791dcba21e0de0a4af55a9", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 1, + "row": 7049 + }, + { + "path": "src/multitasking.py", + "sha256": "7e7ed839a33df335a477a97fcc8aba9c3046175d512455a58727067d24adbcdc", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 1, + "row": 7061 + }, + { + "path": "src/plot.py", + "sha256": "bb158187102bbfc84e0ba3d46111741a75c97c80e74d4e449d80d02b7b89a51b", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 1, + "row": 5947 + }, + { + "path": "src/rnn/bptt.py", + "sha256": "29955254c3542bf723bcf16ab85e85270120618581a6f49fc52fbb2042e7ca43", + "language": "Python", + "lines": 188, + "truncated": false, + "block": 1, + "row": 8518 + }, + { + "path": "src/rnn/dataset.py", + "sha256": "8230052bd20880ad7476ee4b3f58135df39e781d5e40d2c86b9d1d7838d1225a", + "language": "Python", + "lines": 162, + "truncated": false, + "block": 1, + "row": 7948 + }, + { + "path": "src/rnn/main.py", + "sha256": "23cbbb16cc2848d8a56f914076b07a9691386c62c46e2feec5ad4c4cb1cdb46d", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 1, + "row": 6795 + }, + { + "path": "src/rnn/models.py", + "sha256": "0ec700eadd2fd43cc7b7e5994c8118f3c80525f14d2ed40aced16e138168fe44", + "language": "Python", + "lines": 289, + "truncated": false, + "block": 1, + "row": 8777 + }, + { + "path": "src/rnn/ubermain_DEP_optuna.py", + "sha256": "fabe780eaf565fc753bce77ab385b982a88508f9358d4a16b71bbd5af0f63475", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 1, + "row": 6455 + }, + { + "path": "src/training.py", + "sha256": "27d0f525c47d4ece8798f4a863c755a30529db520b759345291500b2e0477208", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 1, + "row": 7416 + }, + { + "path": "src/utils.py", + "sha256": "01b12ddec753c5a01dba292821e83f9d8c7b688c5d112a2ffd769c74ddd6b89f", + "language": "Python", + "lines": 151, + "truncated": false, + "block": 1, + "row": 7583 + } + ] +} \ No newline at end of file diff --git a/manifests/40/github.com__mrc-cbu__riksneurotools.json b/manifests/40/github.com__mrc-cbu__riksneurotools.json new file mode 100644 index 0000000000000000000000000000000000000000..4cbfb03385698952608fd7b6e7f6c7205f342ee3 --- /dev/null +++ b/manifests/40/github.com__mrc-cbu__riksneurotools.json @@ -0,0 +1,183 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/mrc-cbu/riksneurotools", + "url": "https://github.com/MRC-CBU/riksneurotools/blob/master/Util/roi_extract.m", + "host": "github.com", + "commit": "f8b948f0dd465a1af2deedebd050b195ec077a83", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Conn/connectivity_stats.m", + "sha256": "9d86cf43a525489c6980a90090c2224198d19221f9c5797ad27f48bde1025cb9", + "language": "MATLAB", + "lines": 244, + "truncated": false, + "block": 1, + "row": 3935 + }, + { + "path": "Conn/dcor_dc.m", + "sha256": "c8a400fd7d58ac535e69af9def589fa300ea6b1c28adbeb4696fa15c8a466714", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 1, + "row": 2632 + }, + { + "path": "Conn/dcor_uc.m", + "sha256": "4709dd6a737c42356f75c1543e47af2c78ce81db7808de7b0199f669a086883f", + "language": "MATLAB", + "lines": 44, + "truncated": false, + "block": 1, + "row": 2810 + }, + { + "path": "Conn/rsfMRI_GLM.m", + "sha256": "434dfff0f37bdc1ba762314153aacab5ea55148f3c50e979fd8ff110444ee02c", + "language": "MATLAB", + "lines": 685, + "truncated": false, + "block": 1, + "row": 4280 + }, + { + "path": "GLM/check_pooled_error.m", + "sha256": "125438c55d22a9fb5a6f789c696e805e71c2e43ec95493ddb68549080c35aa77", + "language": "MATLAB", + "lines": 677, + "truncated": false, + "block": 1, + "row": 4253 + }, + { + "path": "GLM/fMRI_GLM_efficiency.m", + "sha256": "403527d4d30e2973c65cd42b8d2c42b63ba8b63f31c28772a110c8c27e5c3e14", + "language": "MATLAB", + "lines": 352, + "truncated": false, + "block": 1, + "row": 3993 + }, + { + "path": "GLM/fMRI_multitrial_GLMs.m", + "sha256": "aa9d161481c965e27b24e4e7074204b0096ace9b5663faa9c11d7fe56123642d", + "language": "MATLAB", + "lines": 368, + "truncated": false, + "block": 1, + "row": 4017 + }, + { + "path": "GLM/glm.m", + "sha256": "b045f543ecc70bb8fec5e64424b144585d37d7570be5133ae363a14cdaf33798", + "language": "MATLAB", + "lines": 147, + "truncated": false, + "block": 1, + "row": 3371 + }, + { + "path": "GLM/repanova.m", + "sha256": "d8f8eea3c0d19b7059b079591521cde06069a8307a1cc699714833877e242f35", + "language": "MATLAB", + "lines": 192, + "truncated": false, + "block": 1, + "row": 3562 + }, + { + "path": "GLM/rsfMRI_GLM.m", + "sha256": "434dfff0f37bdc1ba762314153aacab5ea55148f3c50e979fd8ff110444ee02c", + "language": "MATLAB", + "lines": 685, + "truncated": false, + "block": 1, + "row": 4280 + }, + { + "path": "GLM/t_matrix.m", + "sha256": "c46bfa8123aa60b0d19f1c4f6449a2706a9c8bf1361d891348ebdda05bb0ba56", + "language": "MATLAB", + "lines": 207, + "truncated": false, + "block": 1, + "row": 3763 + }, + { + "path": "LICENSE", + "sha256": "589ed823e9a84c56feb95ac58e7cf384626b9cbf4fda2a907bc36e103de1bad2", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2232 + }, + { + "path": "MEEG/detect_ICA_artefacts.m", + "sha256": "1b97f90ecd9ab01b7559e416cf5a8109dcf9385d9a17c7e25bf7411ab81221d5", + "language": "MATLAB", + "lines": 339, + "truncated": false, + "block": 1, + "row": 4153 + }, + { + "path": "MEEG/fuse_lfp.m", + "sha256": "02d9c1fadc9f570cbd4e90372e9128d1c1206653a3dfa0c0a9e171f5c63754c7", + "language": "MATLAB", + "lines": 395, + "truncated": false, + "block": 1, + "row": 4107 + }, + { + "path": "MEEG/get_vertices_fmri.m", + "sha256": "82b8c41377ee11633a16cd0441dbdc8237c27907643f87e298e8ce1f3e5cd419", + "language": "MATLAB", + "lines": 105, + "truncated": false, + "block": 1, + "row": 3328 + }, + { + "path": "MEEG/get_vertices_xyz.m", + "sha256": "05a1c335a482199896406d4a032b939f4dcc59816b89cce674fadd93965cbb1f", + "language": "MATLAB", + "lines": 77, + "truncated": false, + "block": 1, + "row": 3185 + }, + { + "path": "README.md", + "sha256": "b361d026dce173674212cea4ce1b77fec8bc1424742d498ef54985359312ab06", + "language": "Text", + "lines": 35, + "truncated": false, + "block": 1, + "row": 11816 + }, + { + "path": "SPM/batch_spm_anova.m", + "sha256": "d684ed6503b63f89a51b073c58109a0e15921930e1abfbd8f95f8a6b48cf11af", + "language": "MATLAB", + "lines": 361, + "truncated": false, + "block": 1, + "row": 4089 + }, + { + "path": "Util/roi_extract.m", + "sha256": "a200f6dbd8d9f3ca403d8a2f4f4156cd613185dc59ef82f385e27f2e7c6e48a6", + "language": "MATLAB", + "lines": 229, + "truncated": false, + "block": 1, + "row": 3906 + } + ] +} \ No newline at end of file diff --git a/manifests/41/github.com__preethirajamannar__zebrafish-pituitary-blood-flow.json b/manifests/41/github.com__preethirajamannar__zebrafish-pituitary-blood-flow.json new file mode 100644 index 0000000000000000000000000000000000000000..053a31752b4e9966486c004d200cc112d6143af0 --- /dev/null +++ b/manifests/41/github.com__preethirajamannar__zebrafish-pituitary-blood-flow.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/preethirajamannar/zebrafish-pituitary-blood-flow", + "url": "https://github.com/preethirajamannar/Zebrafish-pituitary-blood-flow/tree/flow", + "host": "github.com", + "commit": "8a9ac52cf53ed68751f27a3a9e5e970d437832e8", + "license": "CC0-1.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "a2010f343487d3f7618affe54f789f5487602331c0a8d03f49e9a7c547cf0499", + "language": "License", + "lines": 121, + "truncated": false, + "block": 1, + "row": 2210 + }, + { + "path": "README.md", + "sha256": "eefcfeac2c0a53e6c0d512fc1d8ba30dbd9b9a04583c23c8fe4960852d8b6fb4", + "language": "Text", + "lines": 2, + "truncated": false, + "block": 2, + "row": 2581 + } + ] +} \ No newline at end of file diff --git a/manifests/41/github.com__rhuepp__gemacode.json b/manifests/41/github.com__rhuepp__gemacode.json new file mode 100644 index 0000000000000000000000000000000000000000..4d59cccd4b8f69805f33fa6dcc87dbbc38be9351 --- /dev/null +++ b/manifests/41/github.com__rhuepp__gemacode.json @@ -0,0 +1,48 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/rhuepp/gemacode", + "url": "https://github.com/rhuepp/gemacode.git", + "host": "github.com", + "commit": "44acd1bbbf67d866b6f432c8b701b6de391fc6a8", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "01_Analysis.py", + "sha256": "d191a36a83553adcb7344f64b6d7491a40e45aad73003a634556bee40e6369db", + "language": "Python", + "lines": 1371, + "truncated": false, + "block": 2, + "row": 2243 + }, + { + "path": "02_Figures.py", + "sha256": "ad3ce94567a985b18c89ed6e5b4d4e4c57cb283c37547e656f183e898c180e8a", + "language": "Python", + "lines": 772, + "truncated": false, + "block": 2, + "row": 2226 + }, + { + "path": "LICENSE", + "sha256": "1b31534d921a26e8fa6172ee7d5407423b6d5b2bece7f13f892684fa9eed8baf", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1128 + }, + { + "path": "README.md", + "sha256": "8268314b914828825dd92c322f4d2dee931869ecce2f0ac8d7e8df278149219a", + "language": "Text", + "lines": 99, + "truncated": false, + "block": 2, + "row": 2627 + } + ] +} \ No newline at end of file diff --git a/manifests/41/github.com__steppenwolf0__longcovidmccrefs.json b/manifests/41/github.com__steppenwolf0__longcovidmccrefs.json new file mode 100644 index 0000000000000000000000000000000000000000..eb1651dbacedae5cb9627795462345ad79c6979e --- /dev/null +++ b/manifests/41/github.com__steppenwolf0__longcovidmccrefs.json @@ -0,0 +1,327 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/steppenwolf0/longcovidmccrefs", + "url": "https://github.com/steppenwolf0/longCOVIDMCCREFS", + "host": "github.com", + "commit": "11234733188788c3cc65dce8ef0c5363760cb855", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Discovery/resultsBoruta/ROCMLP.py", + "sha256": "4b4c0725e6007f85306121b560dd591eb1edd4c7edd72d61bcd1d1a5680bd5b7", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 1, + "row": 7411 + }, + { + "path": "Discovery/resultsBoruta/selectBoruta.py", + "sha256": "2d365d6e06b10785633ff3c4293f3b7f2d0cc8385488b82b26d2dcbe6b6fb9ae", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 1, + "row": 6364 + }, + { + "path": "Discovery/resultsDNP/ROCMLP.py", + "sha256": "4b4c0725e6007f85306121b560dd591eb1edd4c7edd72d61bcd1d1a5680bd5b7", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 1, + "row": 7411 + }, + { + "path": "Discovery/resultsDNP/dnp_run2.py", + "sha256": "53823ea90373c782781927570eb7ecc58e1c803694950fa9127c9ee3722a88b5", + "language": "Python", + "lines": 514, + "truncated": false, + "block": 1, + "row": 9225 + }, + { + "path": "Discovery/resultsEN/ROCMLP.py", + "sha256": "4b4c0725e6007f85306121b560dd591eb1edd4c7edd72d61bcd1d1a5680bd5b7", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 1, + "row": 7411 + }, + { + "path": "Discovery/resultsEN/selectEN.py", + "sha256": "0bdfd6a05e85d994209c4e41f5e05d5c3eb3d269dce8554a7df9bbfa858d0efc", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 1, + "row": 6497 + }, + { + "path": "Discovery/resultsGRACES/GRACES.py", + "sha256": "71f9758da572a14cdb6e5107033ac05cdfebac1192cbec1e82ff702e76e681ae", + "language": "Python", + "lines": 178, + "truncated": false, + "block": 1, + "row": 8106 + }, + { + "path": "Discovery/resultsGRACES/GRACESPortFinal.py", + "sha256": "0705b4518929435c64fdc15346f0a13a1b23779b3cf0c6d2f7aa9449f0d38a5b", + "language": "Python", + "lines": 387, + "truncated": false, + "block": 1, + "row": 8852 + }, + { + "path": "Discovery/resultsGRACES/ROCMLP.py", + "sha256": "4b4c0725e6007f85306121b560dd591eb1edd4c7edd72d61bcd1d1a5680bd5b7", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 1, + "row": 7411 + }, + { + "path": "Discovery/resultsKbest/ROCMLP.py", + "sha256": "4b4c0725e6007f85306121b560dd591eb1edd4c7edd72d61bcd1d1a5680bd5b7", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 1, + "row": 7411 + }, + { + "path": "Discovery/resultsKbest/selectKBest.py", + "sha256": "e9362fb164981d522406e9556cd896ff1c90d472f995493f31ab382da1203678", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 1, + "row": 6552 + }, + { + "path": "Discovery/resultsLASSO/ROCMLP.py", + "sha256": "4b4c0725e6007f85306121b560dd591eb1edd4c7edd72d61bcd1d1a5680bd5b7", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 1, + "row": 7411 + }, + { + "path": "Discovery/resultsLASSO/selectLASSO.py", + "sha256": "aa10cc5e2cbda926a59f319a55ae0a8ca5199d74a2e4b297ebaa0906255346b5", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 1, + "row": 6428 + }, + { + "path": "Discovery/resultsMCCREFS2/ROCMLP.py", + "sha256": "4b4c0725e6007f85306121b560dd591eb1edd4c7edd72d61bcd1d1a5680bd5b7", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 1, + "row": 7411 + }, + { + "path": "Discovery/resultsRFECV/ROCMLP.py", + "sha256": "4b4c0725e6007f85306121b560dd591eb1edd4c7edd72d61bcd1d1a5680bd5b7", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 1, + "row": 7411 + }, + { + "path": "Discovery/resultsRFECV/selectRFECV.py", + "sha256": "a2481ba6aee9bee5d1baeb745b46f453feb794407562d7cb5758d7934de572ee", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 1, + "row": 6412 + }, + { + "path": "Discovery/resultsRandomForestFI/ROCMLP.py", + "sha256": "4b4c0725e6007f85306121b560dd591eb1edd4c7edd72d61bcd1d1a5680bd5b7", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 1, + "row": 7411 + }, + { + "path": "Discovery/resultsRandomForestFI/selectRandomForestFeatureSelection.py", + "sha256": "e63e912cdfe4f6e6ce0e78cd6929ff29f630845ebb728832879830258e7c5678", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 1, + "row": 6314 + }, + { + "path": "Discovery/resultsSHAP/ROCMLP.py", + "sha256": "4b4c0725e6007f85306121b560dd591eb1edd4c7edd72d61bcd1d1a5680bd5b7", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 1, + "row": 7411 + }, + { + "path": "Discovery/resultsSHAP/selectShap.py", + "sha256": "e35c7f8f95c42891397dedefbcca042fa8a1227bc4124a6980d483a32b34d70b", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 1, + "row": 6484 + }, + { + "path": "E-ENAD-46/ROCMLP.py", + "sha256": "c33eca26e8d13618ed030cc9874b14e36e76d2f11e2ba7f951bd6d24e2efc1a2", + "language": "Python", + "lines": 186, + "truncated": false, + "block": 1, + "row": 7409 + }, + { + "path": "GSE157103/ROCMLP.py", + "sha256": "c33eca26e8d13618ed030cc9874b14e36e76d2f11e2ba7f951bd6d24e2efc1a2", + "language": "Python", + "lines": 186, + "truncated": false, + "block": 1, + "row": 7409 + }, + { + "path": "GSE226260/Dataset1/subsetDataset.py", + "sha256": "3e33723fe60d7921687c590c88e42e4bf3eb3630b1eda7e1c06bcbe27986fb2e", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 1, + "row": 5423 + }, + { + "path": "GSE226260/Dataset2/subsetDataset.py", + "sha256": "9d06fddcef7f9d5b69f059e88c0f7e0030d08a9d507069545ce1052ec69728b6", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 1, + "row": 5427 + }, + { + "path": "GSE226260/ROCMLP.py", + "sha256": "c33eca26e8d13618ed030cc9874b14e36e76d2f11e2ba7f951bd6d24e2efc1a2", + "language": "Python", + "lines": 186, + "truncated": false, + "block": 1, + "row": 7409 + }, + { + "path": "GSE226260/subsetDataset.py", + "sha256": "9d06fddcef7f9d5b69f059e88c0f7e0030d08a9d507069545ce1052ec69728b6", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 1, + "row": 5427 + }, + { + "path": "GSE270045/ROCMLP.py", + "sha256": "c33eca26e8d13618ed030cc9874b14e36e76d2f11e2ba7f951bd6d24e2efc1a2", + "language": "Python", + "lines": 186, + "truncated": false, + "block": 1, + "row": 7409 + }, + { + "path": "LICENSE", + "sha256": "d59516e21aabf79f9676bfac17efe64ace78aac0be0ab045b3fb3b55c9ea2a3f", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2122 + }, + { + "path": "README.md", + "sha256": "a2a8e4146542dea88a90798cb77c158561ae2b7bd8165bce4571237b8aa9ff54", + "language": "Text", + "lines": 26, + "truncated": false, + "block": 1, + "row": 11801 + }, + { + "path": "src/aBioInf100.py", + "sha256": "216adb98dc0721fa8c334c89132ee2b2a8cd141c25173eebb7e74aee7b5b5f5a", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 1, + "row": 5781 + }, + { + "path": "src/classifiersMulti.py", + "sha256": "548354828376b9d8a7db76cdb8dcb356b833552c20444ef586c74b81936d78ea", + "language": "Python", + "lines": 232, + "truncated": false, + "block": 1, + "row": 8076 + }, + { + "path": "src/features.py", + "sha256": "0d2cb619821a4c1b794bd9bfef0b8ae50988c367799f02ef2bc8dfb832e03c8b", + "language": "Python", + "lines": 357, + "truncated": false, + "block": 1, + "row": 8958 + }, + { + "path": "src/reduceData.py", + "sha256": "e436d1debadbb9fba8726569235b92fbe0d311e6aff07061cc5dbb06465cbc61", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 1, + "row": 5952 + }, + { + "path": "src/sumFig.py", + "sha256": "4d4d19206277e314a012f7b751de46675b9728174def71cd7f9dd03e78f18880", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 1, + "row": 6381 + }, + { + "path": "src/summaryMulti.py", + "sha256": "227e7bf93aeb3c48ec36b2aca3bd1d95a2e17e432ffd7e8795c6fc08d0aa52df", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 1, + "row": 6892 + } + ] +} \ No newline at end of file diff --git a/manifests/41/zenodo__21334250.json b/manifests/41/zenodo__21334250.json new file mode 100644 index 0000000000000000000000000000000000000000..08c0628059328d683b7bf9be5922687932b61d69 --- /dev/null +++ b/manifests/41/zenodo__21334250.json @@ -0,0 +1,192 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:21334250", + "url": "https://doi.org/10.5281/zenodo.21334250", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "77b430b7dcab4f1591bba1e09b63ee44928d1a7f9ea17759b1ad5dd7d66885a6", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2104 + }, + { + "path": "README.md", + "sha256": "a5d1a936a827571eef234620592dbb2aa9f5650e78b436265931ddc94e7c84d6", + "language": "Text", + "lines": 157, + "truncated": false, + "block": 1, + "row": 11901 + }, + { + "path": "assets/palette.py", + "sha256": "bb1e4421a45e0d01f5b127802236e7f3467d7a8f02653d00def3345a71f9fba2", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 1, + "row": 6520 + }, + { + "path": "getting_started.py", + "sha256": "e107045b20a15ef193ba6cd0ee189bd786415e77239399c12ce0cd8cebe8fb59", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 1, + "row": 5897 + }, + { + "path": "src/ROIpy/GUIv2/canvas.py", + "sha256": "c09032cd39c21c44fd998d80b682e7d742375203d9b071aafdfd5c9ac0c61b05", + "language": "Python", + "lines": 379, + "truncated": false, + "block": 1, + "row": 8873 + }, + { + "path": "src/ROIpy/GUIv2/load_frame.py", + "sha256": "ffc6270eb285ff89496eb204d32f1635be05df678ed4d1e02e28dc1d0406ef86", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 1, + "row": 7096 + }, + { + "path": "src/ROIpy/GUIv2/main.py", + "sha256": "d906e79d340ce99e2a8943c558871c92ab2892822889f482351a5ac885d48149", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 1, + "row": 7050 + }, + { + "path": "src/ROIpy/GUIv2/plot_structures_controller.py", + "sha256": "e7c78c7e5e80ec9b92863f53d47cced50826f8278968c3e94a8a3f3a59668c36", + "language": "Python", + "lines": 212, + "truncated": false, + "block": 1, + "row": 7908 + }, + { + "path": "src/ROIpy/GUIv2/save_files.py", + "sha256": "ac16bcab08d8866b73739e55e2c36107bfabdc1cd434daa9abf330dc21f547f9", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 1, + "row": 6733 + }, + { + "path": "src/ROIpy/GUIv2/scan_parameters.py", + "sha256": "f5a0c1b38e762c9918ab8b11afecfeb23755d0dbbb2ab5671ec5bd5f667474b8", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 1, + "row": 7521 + }, + { + "path": "src/ROIpy/__init__.py", + "sha256": "8ad018155ba890d782a943cc687099d5796ebfc30fb7bc2d117603d95cc0807f", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 1, + "row": 5771 + }, + { + "path": "src/ROIpy/analysis/savejson.py", + "sha256": "2f1e0ec377f4767a3457deda3170b093d35d43b77b58f2dfe5cbbd2cc4e06181", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 1, + "row": 5894 + }, + { + "path": "src/ROIpy/analysis/stats.py", + "sha256": "81fb8aeb1040a39684afe3e6ba18edaaa7734b2878794b42a0494c452f467241", + "language": "Python", + "lines": 522, + "truncated": false, + "block": 1, + "row": 9105 + }, + { + "path": "src/ROIpy/core/bundles.py", + "sha256": "860e334705b6afee2f02ced3f5008074d58b3a7f230727ca4a3db5cd3050c0aa", + "language": "Python", + "lines": 635, + "truncated": false, + "block": 1, + "row": 9263 + }, + { + "path": "src/ROIpy/core/components.py", + "sha256": "6165cbcea249c264ae31e873057522425bfe5c7088b875211f8bf3b0ea018fe6", + "language": "Python", + "lines": 624, + "truncated": false, + "block": 1, + "row": 9296 + }, + { + "path": "src/ROIpy/core/makeroi/make_roi.py", + "sha256": "804d856f2b14ab23d20f876a0af4e5ec0e11db1753833382f91994805bec45e0", + "language": "Python", + "lines": 1863, + "truncated": false, + "block": 1, + "row": 9803 + }, + { + "path": "src/ROIpy/core/makeroi/roi_file.py", + "sha256": "f8d4ac42e7cf4aefff4209eeb5808bda143c029e684b603b46971bda0d75e5f1", + "language": "Python", + "lines": 357, + "truncated": false, + "block": 1, + "row": 8597 + }, + { + "path": "src/ROIpy/core/structures.py", + "sha256": "90cb355400072c8aae0a2e19e8f27b75d7b0ee33d4bcb2141ce1fdde9e411fc8", + "language": "Python", + "lines": 616, + "truncated": false, + "block": 1, + "row": 9315 + }, + { + "path": "src/ROIpy/core/utils/utils.py", + "sha256": "b0896917e8fd20e8bf7fb3bf446bed6e66d451e60a09b69bc22b16e317188275", + "language": "Python", + "lines": 428, + "truncated": false, + "block": 1, + "row": 8864 + }, + { + "path": "src/ROIpy/plot/plot.py", + "sha256": "c42fec0b3847feb8cf4537e0cf2a7a058c290c33d453eb26ea85290deabc25a4", + "language": "Python", + "lines": 1599, + "truncated": false, + "block": 1, + "row": 9773 + } + ] +} \ No newline at end of file diff --git a/manifests/42/github.com__rgeirhos__stylized-imagenet.json b/manifests/42/github.com__rgeirhos__stylized-imagenet.json new file mode 100644 index 0000000000000000000000000000000000000000..a085f55a6aca4b5db8be6910eb03365139a6a7cb --- /dev/null +++ b/manifests/42/github.com__rgeirhos__stylized-imagenet.json @@ -0,0 +1,129 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/rgeirhos/stylized-imagenet", + "url": "https://github.com/rgeirhos/Stylized-ImageNet", + "host": "github.com", + "commit": "654e1324c455fbfb15ffec185a9c2543bf773b93", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "64b8412e6a3b070f64b4354f4c826a9785c725e7f49a342488b4631aa3587b8b", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2134 + }, + { + "path": "README.md", + "sha256": "e99e1501c44612f49fb3d5df36b65d00b11a943f8efc7a00b7df0b41e4284442", + "language": "Text", + "lines": 53, + "truncated": false, + "block": 1, + "row": 11926 + }, + { + "path": "code/adain.py", + "sha256": "f974b6be09c24dce0da7a4a883d0cadf24ffffcfbb1ed4a2faf069743a3dbcaf", + "language": "Python", + "lines": 254, + "truncated": false, + "block": 1, + "row": 8374 + }, + { + "path": "code/create_stylized_imagenet.sh", + "sha256": "28378f7227192f66c465982d275ac2d08831ae82eb404502b365075417acdcf8", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11158 + }, + { + "path": "code/function.py", + "sha256": "41ef9044af2244265e328aca2c222af87b870629783c05c0873dca31faaae478", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 1, + "row": 6483 + }, + { + "path": "code/general.py", + "sha256": "592efdf3e4f59b7a10b6a9ad1c99d04fa1179e9e421215d98dcff35b341c42d7", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 1, + "row": 6700 + }, + { + "path": "code/models/download_models.sh", + "sha256": "cb5628cad29ff293978ea329a9d8918e264838f3cace6fb4f145c4fa952777c3", + "language": "Shell", + "lines": 12, + "truncated": false, + "block": 1, + "row": 11400 + }, + { + "path": "code/net.py", + "sha256": "669831bc852e45642a8996b2cda7a4d3a5a9b791c24a755a23b966ae26fea8eb", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 1, + "row": 7458 + }, + { + "path": "code/preprocess_imagenet.py", + "sha256": "18a9f204003830aa3a2cb7617628859db559034fbef327bf872f1f9836869f6b", + "language": "Python", + "lines": 211, + "truncated": false, + "block": 1, + "row": 8133 + }, + { + "path": "code/preprocess_style_imgs.py", + "sha256": "238f0f4f92df7e15f8f261c55acf367cc085fa083c01ce71a278d25f0b67d8ea", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 1, + "row": 6493 + }, + { + "path": "code/sampler.py", + "sha256": "22e346acddd1318a2e17ab40200be395d2781ce097616cd576cbec383ed97b4f", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 1, + "row": 5426 + }, + { + "path": "code/torch_to_pytorch.py", + "sha256": "4a21d61cd21af41edffc5c41f15c1b6f00cd253ea02631b91aa07a4bd2bc00be", + "language": "Python", + "lines": 321, + "truncated": false, + "block": 1, + "row": 8849 + }, + { + "path": "code/train.py", + "sha256": "84859a2f30430cf3d32d3b3d8d3337e08ca337a7531b86f7c2b333064d617153", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 1, + "row": 7304 + } + ] +} \ No newline at end of file diff --git a/manifests/43/github.com__gregbellan__stabl.json b/manifests/43/github.com__gregbellan__stabl.json new file mode 100644 index 0000000000000000000000000000000000000000..57981085535f63fdeda8fa3b972767c126184067 --- /dev/null +++ b/manifests/43/github.com__gregbellan__stabl.json @@ -0,0 +1,264 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/gregbellan/stabl", + "url": "https://github.com/gregbellan/Stabl/tree/main/Sample∖Data", + "host": "github.com", + "commit": "1d07f85a13cfbecb4f08ce21075bf4fbb8e34678", + "license": "BSD-3-Clause", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "4ebb0391c5cbb0d9111b127884ab79998bec5b4d7fab1c3b405eacd1eaf2f550", + "language": "License", + "lines": 32, + "truncated": false, + "block": 1, + "row": 2202 + }, + { + "path": "Notebook examples/Tutorial Notebook.ipynb", + "sha256": "0c080b34877709c2173fbc7b7c92847da231e0b464d5c7153989c4881543bc1f", + "language": "Jupyter", + "lines": 349, + "truncated": false, + "block": 1, + "row": 1956 + }, + { + "path": "Notebook examples/run_cv_CFRNA.py", + "sha256": "c3d08ce95a9a035fa3cd66c9c8dc55487dd70f29675117e444d2c2fd958e2d0b", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 1, + "row": 6920 + }, + { + "path": "Notebook examples/run_cv_COVID.py", + "sha256": "1b651e1d46d9fe8f7829db471f700af2cb8bd7dcb89af8fde9c725c957aacc5e", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 1, + "row": 6732 + }, + { + "path": "Notebook examples/run_cv_DREAM.py", + "sha256": "0f5dddfbd8b85346d28879dc03a64e20e56b922b98e3e44e5e07822a0ebdc886", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 1, + "row": 6752 + }, + { + "path": "Notebook examples/run_cv_OOL_CyPr.py", + "sha256": "a1c51d0c47f87c975d30f36d1317fca242e08561dcf7f137a222689b948ea259", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 1, + "row": 6509 + }, + { + "path": "Notebook examples/run_cv_OOL_CyPrMe.py", + "sha256": "f890b0a2f5276acf0d1d8cea3e3a79c451bbc4248efc93711b378f8525cd64ca", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 1, + "row": 6527 + }, + { + "path": "Notebook examples/run_cv_SSI.py", + "sha256": "648d539a48d89fd01e225e9be810d44bed8e63cfafb73846cdc38476bf7282df", + "language": "Python", + "lines": 103, + "truncated": false, + "block": 1, + "row": 6689 + }, + { + "path": "Notebook examples/run_val_CFRNA.py", + "sha256": "86e1653443f66a797cca19851d6628210f550ada30d422a83771378870114b5e", + "language": "Python", + "lines": 112, + "truncated": false, + "block": 1, + "row": 6859 + }, + { + "path": "Notebook examples/run_val_COVID.py", + "sha256": "200e317cd94e2087dded8c4643f40ebe99bb2a9daf66d651b7db0fa021147f38", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 1, + "row": 6753 + }, + { + "path": "Notebook examples/run_val_DREAM.py", + "sha256": "1093fc207c807b11ea8fa1663cb1d866b1b6b29831c14e04589ef9c7c7a69376", + "language": "Python", + "lines": 108, + "truncated": false, + "block": 1, + "row": 6714 + }, + { + "path": "Notebook examples/run_val_OOL_CyPr.py", + "sha256": "d87dd79800364d5955442ae81cfaf20d6b9f1611a5314d629cfa4b442ae1d68c", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 1, + "row": 6503 + }, + { + "path": "Notebook examples/run_val_OOL_CyPrMe.py", + "sha256": "f90a408a384c0632265ecd3f18241a737993729796a742dbfe1d9a0f84d62504", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 1, + "row": 6500 + }, + { + "path": "Notebook examples/run_val_SSI.py", + "sha256": "0ef30bc5f7ddb0e046918ce3e743d9a1226dcbf04881ae6237ed782de1071a49", + "language": "Python", + "lines": 103, + "truncated": false, + "block": 1, + "row": 6636 + }, + { + "path": "README.md", + "sha256": "6db25e56fb100bdea58762948c2a04402b1a23aaed083844603efd336d5ec56c", + "language": "Text", + "lines": 252, + "truncated": false, + "block": 1, + "row": 11961 + }, + { + "path": "setup.py", + "sha256": "9f163ece58d8051e656b8a5f3c06e2ce29de6392f0fe99473b392b7b9aefb6e8", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 1, + "row": 5497 + }, + { + "path": "stabl/__init__.py", + "sha256": "01ba4719c80b6fe911b091a7c05124b64eeece964e09c058ef8f9805daca546b", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4956 + }, + { + "path": "stabl/adaptive.py", + "sha256": "ba67411882aa6ebe580049d5f6d3246368060aee8d87e2639870e47a56fcf963", + "language": "Python", + "lines": 314, + "truncated": false, + "block": 1, + "row": 8796 + }, + { + "path": "stabl/data.py", + "sha256": "5d073ad8d53a6ab3e52b2f4961e2161f50c962d3dcb5cf23bf30d665a33e0cfc", + "language": "Python", + "lines": 174, + "truncated": false, + "block": 1, + "row": 7646 + }, + { + "path": "stabl/metrics.py", + "sha256": "0180f19edbc19711717b30728e1e6215227a867f444705ec74fbe10608fb330d", + "language": "Python", + "lines": 359, + "truncated": false, + "block": 1, + "row": 8490 + }, + { + "path": "stabl/multi_omic_pipelines.py", + "sha256": "78fe28fbaad2a6c23899d49b3dae0c68b919ab8608f925a01fd01ce0b6457002", + "language": "Python", + "lines": 1154, + "truncated": false, + "block": 1, + "row": 9768 + }, + { + "path": "stabl/pipelines_utils.py", + "sha256": "a3b10c566702c4ed2028668d19faaf9182f99690ec0496976987a627136d4d55", + "language": "Python", + "lines": 515, + "truncated": false, + "block": 1, + "row": 9342 + }, + { + "path": "stabl/preprocessing.py", + "sha256": "59d6ba9d3471a6cb04dc0f4f9ebc6b21a6e90d7686c81f62ba0a11dc8f676831", + "language": "Python", + "lines": 133, + "truncated": false, + "block": 1, + "row": 7321 + }, + { + "path": "stabl/stabl.py", + "sha256": "bd8fabbc631da83ac9ba50c87cdfbd0e02b18743c5241e898ca0ce7abf6ffaaa", + "language": "Python", + "lines": 1466, + "truncated": false, + "block": 1, + "row": 9788 + }, + { + "path": "stabl/stacked_generalization.py", + "sha256": "dfefaea1ede2cb94c663b986c6798e4710086ab182ab72ee726141f9f6d16c4b", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 1, + "row": 6395 + }, + { + "path": "stabl/unionfind.py", + "sha256": "649fb907bd88e5cbd6bff0ea4f18d6fb19e803c57dfa725b1f31881a004c079f", + "language": "Python", + "lines": 323, + "truncated": false, + "block": 1, + "row": 8294 + }, + { + "path": "stabl/utils.py", + "sha256": "323834ccb97317eddfc6b8595636cee3ccd358d8b3fdce695dcd4fb76dee4d53", + "language": "Python", + "lines": 498, + "truncated": false, + "block": 1, + "row": 9070 + }, + { + "path": "stabl/visualization.py", + "sha256": "ac5a1d228cd1bcd24b2005100de2b2e0cd6b3fa4a3421d1131351b83037f40d3", + "language": "Python", + "lines": 762, + "truncated": false, + "block": 1, + "row": 9437 + } + ] +} \ No newline at end of file diff --git a/manifests/44/github.com__mikaelroll__corticalreading.json b/manifests/44/github.com__mikaelroll__corticalreading.json new file mode 100644 index 0000000000000000000000000000000000000000..e44fff26841a4dda3f44f3d0d37fb9e4249d714f --- /dev/null +++ b/manifests/44/github.com__mikaelroll__corticalreading.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/mikaelroll/corticalreading", + "url": "https://github.com/mikaelroll/corticalreading", + "host": "github.com", + "commit": "2cf64d76d37944d6e79d06bdbe08a910d5202231", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "2414f29817dd4ff3fdd17afe729ba8e53b86d7996be71ad14290098305e98ae8", + "language": "License", + "lines": 23, + "truncated": false, + "block": 1, + "row": 2183 + }, + { + "path": "README.md", + "sha256": "90787b1d46db429baab1422716c72fcbb0fa31ba0e6fdd8aea63e6ac1d37aff0", + "language": "Text", + "lines": 89, + "truncated": false, + "block": 1, + "row": 11869 + }, + { + "path": "scripts/extract_areas.sh", + "sha256": "41c9a85492c185e058dfc748d7c44797839a5a078f658127b37054d4569bf3fe", + "language": "Shell", + "lines": 64, + "truncated": false, + "block": 1, + "row": 11660 + }, + { + "path": "scripts/run_ace_model.R", + "sha256": "90976ec4fcc082c09abbb72f5916a80f63a9f433245dcd9659086f6ef908e9ae", + "language": "R", + "lines": 70, + "truncated": false, + "block": 1, + "row": 10092 + }, + { + "path": "scripts/tractography.sh", + "sha256": "2b74916319b804ede4cbae302102c4d29a3ce73808413339cef1279991699074", + "language": "Shell", + "lines": 220, + "truncated": false, + "block": 1, + "row": 11728 + } + ] +} \ No newline at end of file diff --git a/manifests/45/github.com__sunduanchen__scissor.json b/manifests/45/github.com__sunduanchen__scissor.json new file mode 100644 index 0000000000000000000000000000000000000000..8a44b5c43dacea90f7d706e283f793ee44fbc763 --- /dev/null +++ b/manifests/45/github.com__sunduanchen__scissor.json @@ -0,0 +1,192 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/sunduanchen/scissor", + "url": "https://github.com/sunduanchen/Scissor", + "host": "github.com", + "commit": "311560a1f160f665917e7da0fcf289914ee99773", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "8ceb4b9ee5adedde47b31e975c1d90c73ad27b6b165a1dcd80c7c545eb65b903", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2234 + }, + { + "path": "R/APML1.R", + "sha256": "006d098c7fb0c293c61bf4eecf3fb000b1780854ddf109eb4180942c6b44d335", + "language": "R", + "lines": 50, + "truncated": false, + "block": 2, + "row": 2268 + }, + { + "path": "R/RcppExports.R", + "sha256": "c959a444f5c871531dd81a4fca08221cc20da970027bb71a40f648cabe5ef650", + "language": "R", + "lines": 95, + "truncated": false, + "block": 2, + "row": 2305 + }, + { + "path": "R/Scissor.R", + "sha256": "ef4e6226dcc2b54770054dff2359ad418af4fbe74c5967a68b6533132ff4f7bc", + "language": "R", + "lines": 161, + "truncated": false, + "block": 2, + "row": 2334 + }, + { + "path": "R/Seurat_preprocessing.R", + "sha256": "c69b9fefef85be0b337c7e217c731ab557d83718473a3a34fb4fa85e02e4db54", + "language": "R", + "lines": 68, + "truncated": false, + "block": 2, + "row": 2304 + }, + { + "path": "R/evaluate.cell.R", + "sha256": "75ee236283cdd7c70ebc07ea44d1bd4d9007abe51b55933207d77cc07d71a8cc", + "language": "R", + "lines": 102, + "truncated": false, + "block": 2, + "row": 2306 + }, + { + "path": "R/net_cox.R", + "sha256": "47581203d0bad3e01220b9c7bc1b4b012a4b943d0ebb07c7ed26eccdfdb4cdc7", + "language": "R", + "lines": 330, + "truncated": false, + "block": 2, + "row": 2344 + }, + { + "path": "R/net_lm.R", + "sha256": "1b9ebe385189738cd05031ef734c6cf003a1bba80adfb8114d8f4b476234bfe1", + "language": "R", + "lines": 309, + "truncated": false, + "block": 2, + "row": 2342 + }, + { + "path": "R/net_logit.R", + "sha256": "d4bc760fe61c97e3b4233e3be2d1efc4db72367809c9ea521c0ced8e66a30309", + "language": "R", + "lines": 298, + "truncated": false, + "block": 2, + "row": 2339 + }, + { + "path": "R/print.APML1.R", + "sha256": "761c62341a314a4cb49598fb4148b965cc110ab6d51edc0ab0358a25b6e7e114", + "language": "R", + "lines": 50, + "truncated": false, + "block": 2, + "row": 2270 + }, + { + "path": "R/reliability.test.R", + "sha256": "3446921578ccfb647aac1b57ba96ec85490c0669769099a17045dcbb5e56304e", + "language": "R", + "lines": 51, + "truncated": false, + "block": 2, + "row": 2274 + }, + { + "path": "R/test_cox.R", + "sha256": "e3b097175108ad4d0b5cc63122f39fcfcb8862daebf596fcbaaec4e84542334a", + "language": "R", + "lines": 93, + "truncated": false, + "block": 2, + "row": 2287 + }, + { + "path": "R/test_lm.R", + "sha256": "427deb68753032f8f8490f9eb870cde49eee3bd5500464e0c47c9fda811148cf", + "language": "R", + "lines": 79, + "truncated": false, + "block": 2, + "row": 2276 + }, + { + "path": "R/test_logit.R", + "sha256": "d1cd53d0c455aed594320e78e88b13ad85bdc8297929c4b120c2eaec445fc274", + "language": "R", + "lines": 85, + "truncated": false, + "block": 2, + "row": 2282 + }, + { + "path": "README.md", + "sha256": "1f97526cb58c5a79cadf2c20bd2a6a423b90f71c93ec0564bf27b5c9299af6ae", + "language": "Text", + "lines": 40, + "truncated": false, + "block": 2, + "row": 2620 + }, + { + "path": "inst/include/Scissor.h", + "sha256": "2546edf7908f1a03bb24e13c8fc411e3bb8a143d2c2f3a5c6628af3ecb488e9b", + "language": "C/C++", + "lines": 9, + "truncated": false, + "block": 2, + "row": 509 + }, + { + "path": "inst/include/Scissor_RcppExports.h", + "sha256": "effa4a8741b654c5ef2cfe15a0f89b7a556818dbf86c02138e853829ef115b8e", + "language": "C/C++", + "lines": 492, + "truncated": false, + "block": 2, + "row": 906 + }, + { + "path": "src/RcppExports.cpp", + "sha256": "330dd0f99bf9d42a31e10991415fd66d2610dd3f65806c63a0f193147a445ba7", + "language": "C++", + "lines": 1101, + "truncated": false, + "block": 2, + "row": 472 + }, + { + "path": "src/Scissor.cpp", + "sha256": "d5fe04239898af8b3b1fa278885e6fd3c784ea6d4f50084233b5f5a61b98e6cb", + "language": "C++", + "lines": 2212, + "truncated": false, + "block": 2, + "row": 471 + }, + { + "path": "vignettes/Tutorial.Rmd", + "sha256": "d09784ff1808ab574adda53639111c6cf57a913cd00439146d843feed951866b", + "language": "R", + "lines": 233, + "truncated": false, + "block": 2, + "row": 2355 + } + ] +} \ No newline at end of file diff --git a/manifests/45/gitlab.com__chang-hyun.park__postpartum-brain-age-prediction.json b/manifests/45/gitlab.com__chang-hyun.park__postpartum-brain-age-prediction.json new file mode 100644 index 0000000000000000000000000000000000000000..46757470622fb1750a736c007b9fd2e875e36d39 --- /dev/null +++ b/manifests/45/gitlab.com__chang-hyun.park__postpartum-brain-age-prediction.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "gitlab.com/chang-hyun.park/postpartum-brain-age-prediction", + "url": "https://gitlab.com/chang-hyun.park/postpartum-brain-age-prediction", + "host": "gitlab.com", + "commit": "d0265ae061e3e4ed6f0aa4ed7b9f0435f1b4962f", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "577ca25d03ead4417a9fcd0d73d8bba674e7f9832a08c2722862bb120a3a63d3", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2132 + }, + { + "path": "README.md", + "sha256": "c7e733f33c2b2dce6735e620179e8f95fc82f42bd367bc8b7d9489938f6e2172", + "language": "Text", + "lines": 202, + "truncated": false, + "block": 1, + "row": 11941 + }, + { + "path": "postpartum_brain_age_model.py", + "sha256": "a7a8b42fb3e310cfb407028754befd15acb728124548511a7a5ef422b6d38b7c", + "language": "Python", + "lines": 340, + "truncated": false, + "block": 1, + "row": 8868 + } + ] +} \ No newline at end of file diff --git a/manifests/45/zenodo__20613921.json b/manifests/45/zenodo__20613921.json new file mode 100644 index 0000000000000000000000000000000000000000..96ebffc6d2c1deb344c86ae10171f19b97688cf2 --- /dev/null +++ b/manifests/45/zenodo__20613921.json @@ -0,0 +1,111 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:20613921", + "url": "10.5281/zenodo.20613921", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file SPIDER-main.zip/LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "SPIDER-main.zip/LICENSE", + "sha256": "68d351cb6c8b44c23150292fae117496637771972df03ca4682d8ac4b25cbdaa", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2125 + }, + { + "path": "SPIDER-main.zip/README.md", + "sha256": "206920832ad01396fd9e7f86668c31518ba6d75d9e76209eed06fbd6447f6edf", + "language": "Text", + "lines": 104, + "truncated": false, + "block": 1, + "row": 11893 + }, + { + "path": "SPIDER-main.zip/SPIDER/__init__.py", + "sha256": "c804366c5c207ac1cdd80ccb629cebb547a0bf957cba351ca721c3696f94a860", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 1, + "row": 5226 + }, + { + "path": "SPIDER-main.zip/SPIDER/model.py", + "sha256": "c3b9f0370a43addb0b29515d09d4daec58979378fea4eeabc032267cc6d2cdf2", + "language": "Python", + "lines": 300, + "truncated": false, + "block": 1, + "row": 8832 + }, + { + "path": "SPIDER-main.zip/SPIDER/trainer.py", + "sha256": "be4bbf67819b014f9c0bf2b1abfa5acb84a7cf97c7e71a379846e62ebe2489be", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 1, + "row": 7760 + }, + { + "path": "SPIDER-main.zip/SPIDER/utils.py", + "sha256": "bfb08215c8a28f96b6fe43061ca945ba77f7adb61f35b66cdca5f23bbb5b02c7", + "language": "Python", + "lines": 240, + "truncated": false, + "block": 1, + "row": 8445 + }, + { + "path": "SPIDER-main.zip/create_environment.sh", + "sha256": "2dd0e188c0ff798424fbaeda18ed9c745ad589c3bc5e1a776a040e2a21962d97", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11410 + }, + { + "path": "SPIDER-main.zip/preprocess_data.py", + "sha256": "7a1dcb242b9aeaa3a208e740bdeffd9dcfcd1a12a7ef98950ec1c8ae0440cb1f", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 1, + "row": 7207 + }, + { + "path": "SPIDER-main.zip/setup.py", + "sha256": "59dfbc19407ec2467ff23d402e5e02f8f7c0442deb10295aa82ad111e9973d28", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 1, + "row": 5617 + }, + { + "path": "SPIDER-main.zip/train.py", + "sha256": "669f5bfac531adcf32e16a2f345507a45cd371a728cf10b87c14f30942b01780", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 1, + "row": 6537 + }, + { + "path": "SPIDER-main.zip/tutorial.ipynb", + "sha256": "3b9a56a3dfb9ae293255097bd1ff42227092ec8028ffda9648c9a03efb1adad3", + "language": "Jupyter", + "lines": 45, + "truncated": false, + "block": 1, + "row": 1702 + } + ] +} \ No newline at end of file diff --git a/manifests/45/zenodo__20627531.json b/manifests/45/zenodo__20627531.json new file mode 100644 index 0000000000000000000000000000000000000000..93dbb4582b25150a9656c73a55befa091bdf6a5d --- /dev/null +++ b/manifests/45/zenodo__20627531.json @@ -0,0 +1,120 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:20627531", + "url": "10.5281/zenodo.20627531", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "R/00_install_R_packages.R", + "sha256": "2432ec744e089d9760563ef60acfefcefd1e1c02477bfc3cc4b2d884524fba70", + "language": "R", + "lines": 17, + "truncated": false, + "block": 2, + "row": 2259 + }, + { + "path": "R/01_merip_exomePeak2_from_bam.R", + "sha256": "280b18420f90cc2c49f6e0a984decdbf421d161b664a1719468b361976480175", + "language": "R", + "lines": 108, + "truncated": false, + "block": 2, + "row": 2316 + }, + { + "path": "R/02_merip_precomputed_peak_downstream.R", + "sha256": "3125d6df822c509de9cfd2bc314291fd77ac57ac04b36caa3a46fcabcd0f70ae", + "language": "R", + "lines": 73, + "truncated": false, + "block": 2, + "row": 2291 + }, + { + "path": "R/10_bulk_rnaseq_edgeR_limma.R", + "sha256": "ed97ccc47a5e6bc413e011e2dbda4bc015b32a77a94f85d574bb4d7b57baa165", + "language": "R", + "lines": 100, + "truncated": false, + "block": 2, + "row": 2295 + }, + { + "path": "R/functions_enrichment_plot.R", + "sha256": "6fdf4490802324ab91e0a4e986aec8436e4244829078dec2bc65af0684e736d5", + "language": "R", + "lines": 87, + "truncated": false, + "block": 2, + "row": 2292 + }, + { + "path": "README.md", + "sha256": "896736a61232a2102a72a074d8b2a7de37fc1fb015c6f6eeba54e3ff8c370511", + "language": "Text", + "lines": 67, + "truncated": false, + "block": 2, + "row": 2624 + }, + { + "path": "config/project_config.sh", + "sha256": "4d9462e28eba1ae2fa1e95e57b44ec99c18054c8cb643d0780ea6b2cbe753a15", + "language": "Shell", + "lines": 18, + "truncated": false, + "block": 2, + "row": 2509 + }, + { + "path": "scripts/00_check_tools.sh", + "sha256": "410b2d430f16ca4d494f7dc9e991f8a8d020826df44da312bc1ef78f2e961e22", + "language": "Shell", + "lines": 28, + "truncated": false, + "block": 2, + "row": 2513 + }, + { + "path": "scripts/01_prepare_reference_mm10.sh", + "sha256": "ae1481790e3fdf5e2542a021decb88a467f2a8c106695ca5657ae4f61e9e7416", + "language": "Shell", + "lines": 23, + "truncated": false, + "block": 2, + "row": 2511 + }, + { + "path": "scripts/02_run_batch.sh", + "sha256": "d039c0257f21c682f09a0b7d2acf938a5055046880610a6547b2465b293a7be3", + "language": "Shell", + "lines": 100, + "truncated": false, + "block": 2, + "row": 2570 + }, + { + "path": "scripts/03_run_all_batches.sh", + "sha256": "dae5b9c6184dde7fde86e40279359a2395c1f8409fd82d829791ab073991ee04", + "language": "Shell", + "lines": 6, + "truncated": false, + "block": 2, + "row": 2494 + }, + { + "path": "scripts/04_check_bam_outputs.sh", + "sha256": "04b43fcef21ecc5fa3e44f72b9802a6c9e55fd279cfc1d559747d1d5b303f63e", + "language": "Shell", + "lines": 22, + "truncated": false, + "block": 2, + "row": 2508 + } + ] +} \ No newline at end of file diff --git a/manifests/47/github.com__braininnovation__physiocorr.json b/manifests/47/github.com__braininnovation__physiocorr.json new file mode 100644 index 0000000000000000000000000000000000000000..d81c1b67391f3708d18cfcd92d489a5209dd3387 --- /dev/null +++ b/manifests/47/github.com__braininnovation__physiocorr.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/braininnovation/physiocorr", + "url": "https://github.com/BrainInnovation/physiocorr", + "host": "github.com", + "commit": "234eaa957ae622a6956a1d298828ec8fa1bc73c1", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "BatchProcessingPhysioFiles.py", + "sha256": "12d5d7ce18fafa0090f2cc1ed9f0a565f6dd831ad288c944c04a09c87ba38e8e", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 1, + "row": 7254 + }, + { + "path": "CreatePhysioPredictors_BIDS.py", + "sha256": "baf3f4f82ad86d2716b225d69d97df308fef1bd9a961d5b4876c9a6b923a3109", + "language": "Python", + "lines": 1857, + "truncated": false, + "block": 1, + "row": 9852 + }, + { + "path": "LICENSE", + "sha256": "a16f57b16870448f5e5fb5521d96f225be827cb69084cb6e305d3954f241f366", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2140 + }, + { + "path": "README.md", + "sha256": "3904c18f94c0beb22b4c181937c2b33ea77231e55d4d15fac0bab46af88b60a9", + "language": "Text", + "lines": 2, + "truncated": false, + "block": 1, + "row": 11770 + }, + { + "path": "SavePhysiologInBIDSfrom_readCMRRPhysio.py", + "sha256": "4cd44410ab2aa000f3c8fa954e02cc502e883b8f1e43c2e8942af78444c87326", + "language": "Python", + "lines": 205, + "truncated": false, + "block": 1, + "row": 8351 + } + ] +} \ No newline at end of file diff --git a/manifests/48/zenodo__17993133.json b/manifests/48/zenodo__17993133.json new file mode 100644 index 0000000000000000000000000000000000000000..59a7234eeae649c7f4991f9674e9fbbefe3b1425 --- /dev/null +++ b/manifests/48/zenodo__17993133.json @@ -0,0 +1,66 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:17993133", + "url": "https://doi.org/10.5281/zenodo.17993133", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "amphib_classifier.py", + "sha256": "2d3f309cadc245a3a534444ae706c9e2e69d3c2489656d921b366c1c6b395d22", + "language": "Python", + "lines": 297, + "truncated": false, + "block": 2, + "row": 2116 + }, + { + "path": "plotly_grid.py", + "sha256": "5cad11f81d16d3f8c091a3fa9828afc07f88d402bcb396a12c3035879d7bc620", + "language": "Python", + "lines": 208, + "truncated": false, + "block": 2, + "row": 2015 + }, + { + "path": "readme.md", + "sha256": "6d13ac4e70974618e3253c3974671d7d0c57cb25d353747721be84e86a922587", + "language": "Text", + "lines": 25, + "truncated": false, + "block": 2, + "row": 2606 + }, + { + "path": "setup.py", + "sha256": "ab9f7cef3916e4789b9e63624d1aa1c2ff083f950223f53c34757a1ca0d9e480", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 2, + "row": 1666 + }, + { + "path": "sidebar_functions.py", + "sha256": "972465a46fb0f0596c7c578348e319c979b656bb81bf06050e2957a9aed29d1a", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 2, + "row": 1829 + }, + { + "path": "utils.py", + "sha256": "339d67d4865ebf6e07b88eb6f1e64b60f8cb3a718170f162b95591fbf31bf8b2", + "language": "Python", + "lines": 744, + "truncated": false, + "block": 2, + "row": 2203 + } + ] +} \ No newline at end of file diff --git a/manifests/4a/zenodo__21177036.json b/manifests/4a/zenodo__21177036.json new file mode 100644 index 0000000000000000000000000000000000000000..e26add437b59dc5a688e6ab18b776fda641cda88 --- /dev/null +++ b/manifests/4a/zenodo__21177036.json @@ -0,0 +1,237 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:21177036", + "url": "10.5281/zenodo.21177036", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "UnivariateAnalysis.zip/AnalyseTableUnivariateAnalysis.m", + "sha256": "2619a6d2c9fe9c395f52ee05fe050101b8aea2466aa0307669eb12c7cc97d0a3", + "language": "MATLAB", + "lines": 155, + "truncated": false, + "block": 2, + "row": 1487 + }, + { + "path": "UnivariateAnalysis.zip/CreateTableUnivariateAnalysis.m", + "sha256": "1d67b36d13198108cb1d776b1960aef2795aaca596f1330a3bd883bad8cf5437", + "language": "MATLAB", + "lines": 214, + "truncated": false, + "block": 2, + "row": 1532 + }, + { + "path": "extract_all_pooled_plateau_v3_anchors.m", + "sha256": "1c5aeeee8fed33e5aeaba74de12a16230ad95eb595de1b95b65badcef4afe837", + "language": "MATLAB", + "lines": 454, + "truncated": false, + "block": 2, + "row": 1555 + }, + { + "path": "makePeakSortedSpatialMaps.m", + "sha256": "25752f59435636e77a2ba889547f78d992c7dbea9004a55b7ddd728463fceada", + "language": "MATLAB", + "lines": 117, + "truncated": false, + "block": 2, + "row": 1422 + }, + { + "path": "plateau-spatial-analysis.zip/aggregate_across_cells.m", + "sha256": "c56f51d2a951c00ad9768412b96b66199e32c3daa2c75d21b176b7c149b4e980", + "language": "MATLAB", + "lines": 556, + "truncated": false, + "block": 2, + "row": 1554 + }, + { + "path": "plateau-spatial-analysis.zip/analyzePlateauDistributions.m", + "sha256": "c6f9908dee5957314d124d2cb0bfd993c55cdc78c47850cba80fad6dc98a6d1d", + "language": "MATLAB", + "lines": 214, + "truncated": false, + "block": 2, + "row": 1535 + }, + { + "path": "plateau-spatial-analysis.zip/analyze_anchor_set.m", + "sha256": "57b2502829f4967ff27f64fcd3abdb9fcf54cd9f6ec402868e53ede6795873ab", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 2, + "row": 1381 + }, + { + "path": "plateau-spatial-analysis.zip/computeExactAccelEvents.m", + "sha256": "6836f9be2dfe6af25c0f35b65b36588373bcbb811f494cd0898302b82194d8df", + "language": "MATLAB", + "lines": 65, + "truncated": false, + "block": 2, + "row": 1342 + }, + { + "path": "plateau-spatial-analysis.zip/computeExactSpeedEvents.m", + "sha256": "5aa6163e51589121a3fd6d796e4c6123bc5d149e96bc70af2671c790a0366e2a", + "language": "MATLAB", + "lines": 66, + "truncated": false, + "block": 2, + "row": 1350 + }, + { + "path": "plateau-spatial-analysis.zip/computeOppositeRewardEvents.m", + "sha256": "6f6f579eb9646fe28e024529b49a5fcb6c05a82304818a19e8258f7443f913bc", + "language": "MATLAB", + "lines": 53, + "truncated": false, + "block": 2, + "row": 1348 + }, + { + "path": "plateau-spatial-analysis.zip/computeSimilarAccelEvents.m", + "sha256": "e30a3c7ee92841a1e0cf12f11055d427b6d0b40c72680790d3d3e919b8116f8c", + "language": "MATLAB", + "lines": 83, + "truncated": false, + "block": 2, + "row": 1386 + }, + { + "path": "plateau-spatial-analysis.zip/computeSimilarSpeedEvents.m", + "sha256": "e10b4ffa6620e8b2451352e8136cc096286b24609fcba503c50d6051d1fa40e3", + "language": "MATLAB", + "lines": 83, + "truncated": false, + "block": 2, + "row": 1391 + }, + { + "path": "plateau-spatial-analysis.zip/computeSpeedCrossingDownEvents.m", + "sha256": "7c01c5d16e2a157db8b70e89ee70dba30c2686c24eda34641926ccf593c696cb", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 2, + "row": 1172 + }, + { + "path": "plateau-spatial-analysis.zip/computeSpeedCrossingUpEvents.m", + "sha256": "5ae5eb481bf6c5fc1641ea1ce6627fde3ba0d68a0d565d1a145fc1dfb9d00517", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 2, + "row": 1168 + }, + { + "path": "plateau-spatial-analysis.zip/filterPlateausBySpeed.m", + "sha256": "bf8053fd6f30c855f0333daed528ad3cdf185ccfee2f7e46bb54e1b2857df039", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 2, + "row": 1220 + }, + { + "path": "plateau-spatial-analysis.zip/findCrossingsNearRewards.m", + "sha256": "55736f9ffc792f7a6facfd22503e630b22e2d19aed43462245459310aa86d9d3", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 2, + "row": 1385 + }, + { + "path": "plateau-spatial-analysis.zip/find_speed_crossings.m", + "sha256": "027b6f4f9bc7c072b7318fb57d5666e648d7b913ee5fa912b5e2a3d5a5cd055f", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 2, + "row": 1212 + }, + { + "path": "plateau-spatial-analysis.zip/find_speed_crossings_down.m", + "sha256": "7a53916df5e8f334beaa6b5672e0eb29b71ef78a8f7af919cd86466289b0fc4a", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 2, + "row": 1248 + }, + { + "path": "plateau-spatial-analysis.zip/getPlateauInfo.m", + "sha256": "198a6f4dab4c82ba2234b474fe98d26b9ebf85caa307339326c24f02c61197f1", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 2, + "row": 1260 + }, + { + "path": "plateau-spatial-analysis.zip/getWindow.m", + "sha256": "319d0237e1d2cd147cfa8fd374bbe5925ef2e2335a3ed92acc9d006edea96a37", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 2, + "row": 1200 + }, + { + "path": "plateau-spatial-analysis.zip/group_reward_locations.m", + "sha256": "b84f85ae61fec4e25a73fa2fb1a16a4b3cfc0fcadf662e964e0bb5312f27c81a", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 2, + "row": 1349 + }, + { + "path": "plateau-spatial-analysis.zip/plotSixDistributions.m", + "sha256": "de06048bbfa041d3b1b6fcd893b5c601f4290c9df87e3f0079586717fa0b2eb9", + "language": "MATLAB", + "lines": 77, + "truncated": false, + "block": 2, + "row": 1373 + }, + { + "path": "plateau-spatial-analysis.zip/plotTwoDistributions.m", + "sha256": "a36fc3d4b4bef491eb6052ee8de4933f0752f08afcb3734a9e7eb29d3ffae32a", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 2, + "row": 1249 + }, + { + "path": "plateau-spatial-analysis.zip/processEventsAroundAnchorDistance.m", + "sha256": "1ad5d7caf9f28ead7308019918aeab5bbac0fd978e3f4409eba2ff86b21960ef", + "language": "MATLAB", + "lines": 191, + "truncated": false, + "block": 2, + "row": 1490 + }, + { + "path": "plateau_clustering_analysis_v3_anchors.m", + "sha256": "36c886ee0ca2017895a749b298452ba2054a9091566d3be668cb8b90c262e153", + "language": "MATLAB", + "lines": 448, + "truncated": false, + "block": 2, + "row": 1557 + } + ] +} \ No newline at end of file diff --git a/manifests/4b/github.com__lemon-creat__pisa-2022-science-prediction.json b/manifests/4b/github.com__lemon-creat__pisa-2022-science-prediction.json new file mode 100644 index 0000000000000000000000000000000000000000..d9c7d5f8f8f5f7ddf95af784f225fe3d02d21a7e --- /dev/null +++ b/manifests/4b/github.com__lemon-creat__pisa-2022-science-prediction.json @@ -0,0 +1,381 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/lemon-creat/pisa-2022-science-prediction", + "url": "https://github.com/Lemon-creat/pisa-2022-science-prediction", + "host": "github.com", + "commit": "b01cb52f44302cc46975e3154963f5bcecbecf2e", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "7c3c8a0a2c803e3654e30ec85d693f130dd72c97860b3af35aef30e38df4dd22", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2181 + }, + { + "path": "README.md", + "sha256": "5b982f8be69e67815ca87aa869f58011a521f0253235174aa13f5782b7eb8650", + "language": "Text", + "lines": 128, + "truncated": false, + "block": 1, + "row": 11960 + }, + { + "path": "scripts/aggregate_gabpnn_global_shap.py", + "sha256": "4a35d7591a7e21f93f6da91599fc7af507226b934ad0aa0f746071505229f7ae", + "language": "Python", + "lines": 329, + "truncated": false, + "block": 1, + "row": 8984 + }, + { + "path": "scripts/aggregate_heldout_metrics.py", + "sha256": "9d2da91cf6a650e36c74f9dcd6b656a646f3aba581471b8b156814ff433c7918", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 1, + "row": 6758 + }, + { + "path": "scripts/baseline_models.py", + "sha256": "3b0da67e2e3235ee0a057950378bf93194628f666ea6b3624909f55cb308c5fa", + "language": "Python", + "lines": 228, + "truncated": false, + "block": 1, + "row": 8290 + }, + { + "path": "scripts/bootstrap_pisa2022_revision_env.sh", + "sha256": "372291faf5ab33817afef3513a31eff19ade26bd0f1d9a6a6f991dc7d4793203", + "language": "Shell", + "lines": 40, + "truncated": false, + "block": 1, + "row": 11626 + }, + { + "path": "scripts/bpnn_batch.py", + "sha256": "a12365cc13a0273b3b8fccd791de536beefa91ab7ff626034dc34d5357197a47", + "language": "Python", + "lines": 511, + "truncated": false, + "block": 1, + "row": 9525 + }, + { + "path": "scripts/bpnn_training.py", + "sha256": "dceeb6248df071f961c9cb9ff5b6659876ac966075efff151ae99467081fc84b", + "language": "Python", + "lines": 340, + "truncated": false, + "block": 1, + "row": 8969 + }, + { + "path": "scripts/build_analysis_input.py", + "sha256": "ce8ad6bc99fbc0ef52a56e022ed0a167cf207a5cf0925875092ad705e9aad41d", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 1, + "row": 7057 + }, + { + "path": "scripts/compare_xgboost_gabpnn_shap.py", + "sha256": "ac09c0112ee2eb7e12e5f41d4bd8a18502024c3a89b52d7a06aefc8df3cc6dc5", + "language": "Python", + "lines": 161, + "truncated": false, + "block": 1, + "row": 8196 + }, + { + "path": "scripts/gpu_metaheuristics.py", + "sha256": "276cd5d4ece258652e28930f423cb638c3e12cbb59acfdb2bd1718ea6247420c", + "language": "Python", + "lines": 561, + "truncated": false, + "block": 1, + "row": 9449 + }, + { + "path": "scripts/initialization_mapping.py", + "sha256": "0ec9a1f4745152ad4edf38dcd2d929d14b1aad693afb69db0ce73b8d01d4cf6a", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 1, + "row": 6141 + }, + { + "path": "scripts/metrics.py", + "sha256": "fe7935f64b69c81e43c7703a318dfab4fc221ffce5f1780f01ca3653eaa5b157", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 1, + "row": 6382 + }, + { + "path": "scripts/pipeline_core.py", + "sha256": "4130760adbd39af282486cc845ec9de4bd0041c05b5a057bb56e44d4f071d1e4", + "language": "Python", + "lines": 156, + "truncated": false, + "block": 1, + "row": 8053 + }, + { + "path": "scripts/prepare_repeated_splits.py", + "sha256": "9a28fd5c91aec266f1c38f1cba0827eae67ba29b7f0662a601edc412ee034f56", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 1, + "row": 7919 + }, + { + "path": "scripts/prepare_sensitivity_splits.py", + "sha256": "79b1979b44a616d61bd860433018a2ec98702701837a4e5699248080945304b9", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 1, + "row": 6670 + }, + { + "path": "scripts/run_classical_models.py", + "sha256": "2a8655102f42882ef814a3080d982f1099b0cad017bbf0825d931325b465ac7e", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 1, + "row": 7503 + }, + { + "path": "scripts/run_composite_models.py", + "sha256": "8022a6e5d8aa9e86569e2acf02a69e217a92f8cbbea1d3f2566344045b96af48", + "language": "Python", + "lines": 152, + "truncated": false, + "block": 1, + "row": 7938 + }, + { + "path": "scripts/run_gabpnn_shap.py", + "sha256": "05c0ba193b20470860814501194ff58216e95dd3002ff38d3c3295d1e2571a59", + "language": "Python", + "lines": 381, + "truncated": false, + "block": 1, + "row": 9173 + }, + { + "path": "scripts/run_missing_data_sensitivity.py", + "sha256": "401f415ab4ec2dd02549ff1efa5286c4971bd30f221da9dc79a0ca154bf03636", + "language": "Python", + "lines": 245, + "truncated": false, + "block": 1, + "row": 8846 + }, + { + "path": "scripts/run_model_sensitivity.py", + "sha256": "887acf18f7367289a6d0dbfbfc8ee6293682f0f1de3d46d39b1c8e07c88436a6", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 1, + "row": 8317 + }, + { + "path": "scripts/run_model_sensitivity_pipeline.py", + "sha256": "5f9599bb2a213fe8a0a9ce579a9ec63d820fe66f1c7849605251c3ebc52051af", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 1, + "row": 7337 + }, + { + "path": "scripts/run_xgboost_shap.py", + "sha256": "e04df72a61727dc0601661ed96ac7a7e061d1735dc70bfdde90e035fb0ee5442", + "language": "Python", + "lines": 195, + "truncated": false, + "block": 1, + "row": 8423 + }, + { + "path": "scripts/screening.py", + "sha256": "e67f69d46985671701446a7e0b315f23d404b40e289ad9e28f5647a756ba52cf", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 1, + "row": 6628 + }, + { + "path": "scripts/shap_aggregation.py", + "sha256": "97b886930108882e5cd6871a2d0bf7e0f900c5b971b98147243cb79106ff0c02", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 1, + "row": 7255 + }, + { + "path": "scripts/shap_model.py", + "sha256": "ef83e85cc782394c509a972460d2dfd2c358c71347cdee63cce232d37e7e4b7c", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 1, + "row": 7522 + }, + { + "path": "scripts/summarize_table1.py", + "sha256": "2d8846290dfff34c7bcf376b8c775f1ca957bff39479d78762e80925ee6ad64a", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 1, + "row": 7002 + }, + { + "path": "scripts/target_scaling.py", + "sha256": "7c032c6175c0e5d604f7eb76324a9849341deef646cd3e5ae446cd39d5dcbeee", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 1, + "row": 5880 + }, + { + "path": "tests/test_aggregate_heldout_metrics.py", + "sha256": "df3245994e82dc5ac7149266e7210102df78f438e2198682ec21e75281940d8e", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 1, + "row": 6196 + }, + { + "path": "tests/test_baseline_fold_target_scaling.py", + "sha256": "2816e057fcd12524e5b122354a28b715ad1c82e2f639772b2d02b401e3b9820b", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 1, + "row": 5819 + }, + { + "path": "tests/test_baseline_grouped_cv.py", + "sha256": "70cd5cde7f858497dc290e9674edeb6f8af359c35fdf85efc216b915fe70ed54", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 1, + "row": 6380 + }, + { + "path": "tests/test_build_analysis_input.py", + "sha256": "e57066b6db917a707f89b76f97d0924d1ad846d7587e5be3e0e57f80d5874a86", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 1, + "row": 6529 + }, + { + "path": "tests/test_classical_model_selection_config.py", + "sha256": "59b7bfab4903cb8f048988a7ea94d99aed96b3328087031801df5618212f4721", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 1, + "row": 5630 + }, + { + "path": "tests/test_compare_xgboost_gabpnn_shap.py", + "sha256": "bd23ba93c6925edeb7f7329a4268c213adb927c3f960a71a94a3d3e313bf5e0a", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 1, + "row": 5565 + }, + { + "path": "tests/test_full_sample_brr_summary.py", + "sha256": "28f9c6e8771bf21d481f810a3ab138d518e553155338b79d8b71b70ca44549a1", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 1, + "row": 5932 + }, + { + "path": "tests/test_heldout_metrics_without_brr.py", + "sha256": "b8305c6ede0d5d2e4e144414d13e8e6e0408b7b7254e91ebae13e768a3b1c798", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 1, + "row": 5828 + }, + { + "path": "tests/test_missing_data_sensitivity.py", + "sha256": "0d8ed4c1c97876b853e8c231786fa24e99a5d3df1679c42c4673012cf7470249", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 1, + "row": 5758 + }, + { + "path": "tests/test_model_sensitivity_pipeline.py", + "sha256": "7775f7dac217a5ba59dbb493fa489d94d2e56088996e4e609a8f2a93ed17d87e", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 1, + "row": 6547 + }, + { + "path": "tests/test_sensitivity_orchestration.py", + "sha256": "7f13a4b69cb20e502c98aa060d65012b5f8f2ae055eac83f080be88fe37687d9", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 1, + "row": 5789 + }, + { + "path": "tests/test_shap_pv_models.py", + "sha256": "ea89aa8c8c8b54b45856931f59ee49b77242e380672e678435388f4a11d6877f", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 1, + "row": 5668 + }, + { + "path": "tests/test_xgboost_shap_sensitivity.py", + "sha256": "aff3bbec36d5f7b0ccac097b27dcd0709befe2fc0e1a2aa260a911054b8c2098", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 1, + "row": 5706 + } + ] +} \ No newline at end of file diff --git a/manifests/4b/github.com__lijc0804__tsvelo.json b/manifests/4b/github.com__lijc0804__tsvelo.json new file mode 100644 index 0000000000000000000000000000000000000000..c3d09cb615a9bd4fd10132487f9744179cba54ca --- /dev/null +++ b/manifests/4b/github.com__lijc0804__tsvelo.json @@ -0,0 +1,111 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/lijc0804/tsvelo", + "url": "https://github.com/lijc0804/TSvelo", + "host": "github.com", + "commit": "6e0ab8264e02aa511576278219fd7c1c65efec80", + "license": "MIT", + "license_confirmed_by": "license file LICENSE.txt", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.txt", + "sha256": "71b11e4bbecf3e9e09458ff3e2784800865c761fa51dc3fefb4c754f5aa3be00", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2135 + }, + { + "path": "TSvelo/TSvelo_branch.py", + "sha256": "62b5cc534aab925735b3dc4d6c9363efdd9cea513b04fb35c6e828023436870c", + "language": "Python", + "lines": 226, + "truncated": false, + "block": 1, + "row": 8363 + }, + { + "path": "TSvelo/TSvelo_concate.py", + "sha256": "88d1e0735573eba749e5384e927734d2b273dec4e9b4969a17e7e22e02d1be88", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 1, + "row": 7213 + }, + { + "path": "TSvelo/TSvelo_model.py", + "sha256": "18ad0f0bc6da22de8e73aa7d435ef0dd543a9e1d0adc674f2740940279ba371a", + "language": "Python", + "lines": 317, + "truncated": false, + "block": 1, + "row": 8886 + }, + { + "path": "TSvelo/TSvelo_pp.py", + "sha256": "ca708de7e48ad7eb83090419bc1cd8cf0265abef412edb1ef312542a1d9af339", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 1, + "row": 7040 + }, + { + "path": "TSvelo/TSvelo_pp_utils.py", + "sha256": "bb3a73c069e79b31a171685fc24ff0540e20955d100248323d535398c94f94b9", + "language": "Python", + "lines": 212, + "truncated": false, + "block": 1, + "row": 8529 + }, + { + "path": "TSvelo/TSvelo_utils.py", + "sha256": "f6b8ad45e226787b1cfb5d90c5730d0c1ae38036266b04626fa9e35143695675", + "language": "Python", + "lines": 589, + "truncated": false, + "block": 1, + "row": 9426 + }, + { + "path": "TSvelo_analysis.ipynb", + "sha256": "68ae96e53864f13ff61f085dad138c9ad3e77a13fe3ac486757e144b35b6b41b", + "language": "Jupyter", + "lines": 102, + "truncated": false, + "block": 1, + "row": 1735 + }, + { + "path": "TSvelo_branch_analysis.ipynb", + "sha256": "485df5206815e4b34cf092d094fa44c414e133cb6fd578cb8e2edf9f2c42bfca", + "language": "Jupyter", + "lines": 47, + "truncated": false, + "block": 1, + "row": 1691 + }, + { + "path": "TSvelo_run.py", + "sha256": "2265813639c01bfede73c6754ef322ff3c17ad6e2e331b9b6a169297f397fd5c", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 1, + "row": 7082 + }, + { + "path": "readme.MD", + "sha256": "87245cbf091321df519b93d4d9448b9fb0eb007f38302f91c786f7659ca19550", + "language": "Text", + "lines": 45, + "truncated": false, + "block": 1, + "row": 11827 + } + ] +} \ No newline at end of file diff --git a/manifests/4b/github.com__melikelakadamyali__stormanalysissoftware.json b/manifests/4b/github.com__melikelakadamyali__stormanalysissoftware.json new file mode 100644 index 0000000000000000000000000000000000000000..e3513f38aa49bbc258e941d7ba8fbf07f0fd1851 --- /dev/null +++ b/manifests/4b/github.com__melikelakadamyali__stormanalysissoftware.json @@ -0,0 +1,2199 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/melikelakadamyali/stormanalysissoftware", + "url": "https://github.com/melikelakadamyali/StormAnalysisSoftware", + "host": "github.com", + "commit": "ddaea080d42c03647204e470611ba94146259352", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "2PeakAnalysis/Insight3.m", + "sha256": "857f20748641b709c491b069e3f319aa697629b9126c4f1d3cf3464036cc55eb", + "language": "MATLAB", + "lines": 1328, + "truncated": false, + "block": 1, + "row": 4337 + }, + { + "path": "2PeakAnalysis/construct_voronoi_structure.m", + "sha256": "e60b8e900112c8b7d4e65e954da5c1a06a11cc92505bfcf7eabe8a83a1452011", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 1, + "row": 2890 + }, + { + "path": "2PeakAnalysis/main.m", + "sha256": "653c6f92193c845e9017482029bb1375b660972488115f20468d6dc5bf48803a", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 1, + "row": 3096 + }, + { + "path": "2PeakAnalysis/plot_voronoi_area.m", + "sha256": "93b52c31410c7e086ca8922f10c0a1afba5e61ff187e81d87235aed05c357476", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 1, + "row": 2584 + }, + { + "path": "CheckIfImageIsBinary.m", + "sha256": "e7cccb86e2e8690fb3c77b62b61d9d039c80b3585e10e349e73a50586af02788", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 1, + "row": 2995 + }, + { + "path": "ColocalizationTubulins.m", + "sha256": "73aca5b0a7cadcecd33c626fa96efb3293865af96412ef8eec4d536afe1755f2", + "language": "MATLAB", + "lines": 419, + "truncated": false, + "block": 1, + "row": 4243 + }, + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "51ee6a27a5bd9ddeac1a195f145297d029a3b499ecc8ccd9ab4414427c71afad", + "language": "Text", + "lines": 28, + "truncated": false, + "block": 1, + "row": 11821 + }, + { + "path": "Santiago-Ruiz_et_al_Coloc_Pipeline/Automatic_Data_Pipeline_v2.m", + "sha256": "34949995e3e8d51e128e023f7c8e639317cc6cb08252550c2cd00a85272bee18", + "language": "MATLAB", + "lines": 282, + "truncated": false, + "block": 1, + "row": 4188 + }, + { + "path": "Santiago-Ruiz_et_al_Coloc_Pipeline/ExtractNames.m", + "sha256": "d8e4efa188db8a584f083b7357c28808cbcafafafe5f4d81a8bb6ef0019212a0", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 1, + "row": 2498 + }, + { + "path": "Santiago-Ruiz_et_al_Coloc_Pipeline/FindBorders.m", + "sha256": "a247a7a8f2cb3f448625d64d86a6652e8c744774b684d83a2d8c28d754cb963f", + "language": "MATLAB", + "lines": 120, + "truncated": false, + "block": 1, + "row": 3910 + }, + { + "path": "Santiago-Ruiz_et_al_Coloc_Pipeline/OverlapCalculation.m", + "sha256": "ab7a47d71af5bd8714728a7be88ef50081c183a166ffb7da5a7e97d917fac9cc", + "language": "MATLAB", + "lines": 89, + "truncated": false, + "block": 1, + "row": 3403 + }, + { + "path": "Santiago-Ruiz_et_al_Coloc_Pipeline/calcArea.m", + "sha256": "fbb4645d0b59252d1061657a87dd786e1c0831d4cf2209909166b8e423d2ebd3", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 1, + "row": 2953 + }, + { + "path": "Santiago-Ruiz_et_al_Coloc_Pipeline/calcLocs.m", + "sha256": "8934faf2c1c688ee64abfb7f15ef3d30dfc386f8f43e4cdf6ceed7100a2633cd", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 1, + "row": 2723 + }, + { + "path": "Santiago-Ruiz_et_al_Coloc_Pipeline/extract_clusters.m", + "sha256": "61296c4cb014d8912a8b6e7d97bd3396b79bb6e1210a8299ede24bb87996b52b", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 1, + "row": 2565 + }, + { + "path": "Santiago-Ruiz_et_al_Coloc_Pipeline/filter_area.m", + "sha256": "b54e662bbded32c8b3e6f6908462a2a7aa2fa138bb6ab776888c588fb8d4a27f", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 1, + "row": 2889 + }, + { + "path": "Santiago-Ruiz_et_al_Coloc_Pipeline/pile_data.m", + "sha256": "c252f0108d9080e60b5cafd1b6bf5348e5d0ca1685cd0ad896bf0506e684b850", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 1, + "row": 2975 + }, + { + "path": "Santiago-Ruiz_et_al_Coloc_Pipeline/remove_outliers.m", + "sha256": "ab3ddbd43b8492fa1ff824f6d0709ded3e01840c0bf4f41e85d6d24435cf875b", + "language": "MATLAB", + "lines": 133, + "truncated": false, + "block": 1, + "row": 3660 + }, + { + "path": "Santiago-Ruiz_et_al_Coloc_Pipeline/reorganizeData.m", + "sha256": "dcd570f453dae6db84b575850f60e3b53c2e54c082cbe7636f1d6a22ef3babcb", + "language": "MATLAB", + "lines": 75, + "truncated": false, + "block": 1, + "row": 3231 + }, + { + "path": "Santiago-Ruiz_et_al_Coloc_Pipeline/unpile_data.m", + "sha256": "f62e0c86270aeebb7cf96fce811807b95acf7c25bf9c785b18279468250ab4cd", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 1, + "row": 2676 + }, + { + "path": "SelectTracksInROI.m", + "sha256": "f85db9cd9b22044fda872eefe885e8a09feaa1d2d5868bf3ee8f30c2691d683c", + "language": "MATLAB", + "lines": 83, + "truncated": false, + "block": 1, + "row": 3607 + }, + { + "path": "TracksToCsv.m", + "sha256": "736096b7ffef3cc80e7d20c46a8e6cac695f7afadc3612e0ca7fde3fd9f3d54f", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 1, + "row": 2674 + }, + { + "path": "Untitled.m", + "sha256": "7e8e3c12b37c889d1424dec7179b18efe5ac3359993d484efbcd931542dbfb5b", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 1, + "row": 2914 + }, + { + "path": "count_number_of_locs_per_frame.m", + "sha256": "3fc5b90aac38a6ff4bcbbceab47865167a0ce18a86de8242b55b5b6162b34c8d", + "language": "MATLAB", + "lines": 65, + "truncated": false, + "block": 1, + "row": 3239 + }, + { + "path": "data_analysis_software.m", + "sha256": "6b45660319942ac6226012aed26fb669e4311f0e68cd4dbc3726ba756d29d4f9", + "language": "MATLAB", + "lines": 435, + "truncated": false, + "block": 1, + "row": 4208 + }, + { + "path": "dbscan_python.py", + "sha256": "4051f425d0aae02907595fbed3665c85f810d804332c3398ba164adee6b0dc66", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 1, + "row": 5312 + }, + { + "path": "general/calculate_pdf_cdf.m", + "sha256": "80a78a3e93a97ab1897236405db2762eff2be374be270ea13f332f76b5fee53a", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 1, + "row": 2455 + }, + { + "path": "general/calculate_pdf_cdf_norm.m", + "sha256": "f722fb4f4912898df0ce0be827345c98c39a5d2bca1917c1be440f81e6b65897", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 1, + "row": 2490 + }, + { + "path": "general/calculate_pdf_cdf_reverse.m", + "sha256": "b209ff9e692445ad16ed67ca190fd92dbc9fe856d5e4cd888f2a3f64959a4d58", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 1, + "row": 2468 + }, + { + "path": "general/get_capture_from_figure.m", + "sha256": "013adbb9985730065e966e583bf7dbdd49158fce79412bcca3848df931bcdf69", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 1, + "row": 2325 + }, + { + "path": "general/get_size.m", + "sha256": "6fd21bc511bf99687dcf1a8d13eaaebc7debbb709ba270556bbca1bd0feb7cba", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 1, + "row": 2361 + }, + { + "path": "general/plot_histogram.m", + "sha256": "4bc05413c23c27de7620545c4c24759bface705fe654e900bf9c4d311416ef8d", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 1, + "row": 2763 + }, + { + "path": "general/save_work.m", + "sha256": "9dab4b9d005e3961efaab043ebd3206d5f56acfc5f4a2d814295dfd3500fa16d", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 1, + "row": 2290 + }, + { + "path": "general/send_data_to_workspace.m", + "sha256": "4df9eed3ee43f7d07296c330298edcbb654079c92ad717768d2e4d5d53f7ffb6", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 1, + "row": 2491 + }, + { + "path": "general/show_info.m", + "sha256": "db7a7bee33e0e50240898e954f1e1d177866c1debdfaf70ee3316804ea8a3784", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 1, + "row": 2289 + }, + { + "path": "general/spectrum_1d_plot.m", + "sha256": "5435bb79aece1047a17d7100640e7425e25d212ede034d17ac0111cd2b16d808", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 1, + "row": 2479 + }, + { + "path": "general/subtightplot.m", + "sha256": "227842cc4b75d78e9083f049bf50515d10117a47975f3ed6e9c3657cc36a390b", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 1, + "row": 3350 + }, + { + "path": "general/table_data_plot.m", + "sha256": "3410b4d63ccad6447d7436d07219b3f7c2407c089ab65d828dd5cb937f91c99f", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 1, + "row": 2705 + }, + { + "path": "image_analysis/image_average_filter.m", + "sha256": "85098500504abfac7185e384fdd5ba56db0daf248f7629dfc5596045822d276d", + "language": "MATLAB", + "lines": 78, + "truncated": false, + "block": 1, + "row": 3406 + }, + { + "path": "image_analysis/image_bpass_filter.m", + "sha256": "799ffe6514cdcb7bc9f480f2e51b5ad54fa7ea11f76305765bd754126cb5aaee", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 1, + "row": 3360 + }, + { + "path": "image_analysis/image_crop.m", + "sha256": "0c1a1655e0345726ce3ee3348b50a70eb255ca182c5fbf9fbed6f88dd0a4741e", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 1, + "row": 2733 + }, + { + "path": "image_analysis/image_crop_enter_values.m", + "sha256": "0b2e6667d8bb5e8cfad1a92219261e5b1cab0230b839ce0d2155cfd71a7faecb", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 1, + "row": 2846 + }, + { + "path": "image_analysis/image_disk_filter.m", + "sha256": "229471aad2c726817c3e78a76f8602b9ab972b1e3d80ceb0926d0d2a7a3e5d29", + "language": "MATLAB", + "lines": 75, + "truncated": false, + "block": 1, + "row": 3374 + }, + { + "path": "image_analysis/image_flip_color.m", + "sha256": "e616249801e72fb9474b2db3eb00f50b73167edd4c14fab5e61ec13210a58599", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 1, + "row": 2328 + }, + { + "path": "image_analysis/image_flip_lr.m", + "sha256": "095b4911133c4531807404c59e1b006ebf9efa78151804b9a2df0c85c519b057", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 1, + "row": 2315 + }, + { + "path": "image_analysis/image_flip_ud.m", + "sha256": "d3fb927f697e8ef87e156a7eb7f8168409fb7f9bb4153b5ccce04af32407368d", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 1, + "row": 2319 + }, + { + "path": "image_analysis/image_gaussian_filter.m", + "sha256": "5adb2e078b3643b78f249f80014438d17da14908cad7adfb113fa57c06e45086", + "language": "MATLAB", + "lines": 72, + "truncated": false, + "block": 1, + "row": 3347 + }, + { + "path": "image_analysis/image_laplacian_filter.m", + "sha256": "c122b128bcb2f91992344a4d2beb9eb055300c8ccdbda55dcd9cbfccc08035dd", + "language": "MATLAB", + "lines": 94, + "truncated": false, + "block": 1, + "row": 3599 + }, + { + "path": "image_analysis/image_log_filter.m", + "sha256": "e6b31f05b6b5ce6ec84c1389cc408ffb38f7037a6da0b855d1ae560433466e59", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 1, + "row": 2445 + }, + { + "path": "image_analysis/image_motion_filter.m", + "sha256": "fcce4023a8a07b9491a034ee1eee7672ab86fc798d2298d51cec294d1cb0fcad", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 1, + "row": 2442 + }, + { + "path": "image_analysis/image_plot.m", + "sha256": "3eae7e76dfe5252f7c3d1d07d812968d2b4d7fc056f65595aa2dc226bc803103", + "language": "MATLAB", + "lines": 246, + "truncated": false, + "block": 1, + "row": 4050 + }, + { + "path": "image_analysis/image_plot_mouse_up.m", + "sha256": "da09fe434962a6fc90a11c623dbabfc10d795376ebdcfced1a5b8e7b21fc8f1c", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 1, + "row": 2372 + }, + { + "path": "image_analysis/image_plot_right_click.m", + "sha256": "5edf9b4454511775b1ab61c62dc52f89456cd2dc5b7bf8abeaa5e47967964bec", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 1, + "row": 2746 + }, + { + "path": "image_analysis/image_prewitt_filter.m", + "sha256": "0b27df0d983ceaed1900069061ffaa3bbc5e89a8f045df38016b39bbf385a583", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 1, + "row": 2305 + }, + { + "path": "image_analysis/image_save_video.m", + "sha256": "36ddb6ddd05ce2571b6bee436b3bbd694a76e2334aefe3ecc05405bbbbf9129d", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 1, + "row": 2419 + }, + { + "path": "image_analysis/image_sharpen.m", + "sha256": "6c37be414b9544794c531737016221804c3a45e1ba278a47370754f40f311e7e", + "language": "MATLAB", + "lines": 68, + "truncated": false, + "block": 1, + "row": 3365 + }, + { + "path": "image_analysis/image_sobel_filter.m", + "sha256": "4da6fd073e585eb0077406bd26440bd60ecf652b5541a9ba36ffb5fcba0d2649", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 1, + "row": 2302 + }, + { + "path": "image_analysis/image_transpose.m", + "sha256": "bb2c963547aa30040394d3874ebfd8bc86feaf775c5ffdceb55ba9d61a996900", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 1, + "row": 2313 + }, + { + "path": "load_files/image/load_image.m", + "sha256": "c0bde50575c1e66da3c656ef20776ae8261d56d72bbd794a9bf8742612d111f0", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 1, + "row": 2786 + }, + { + "path": "load_files/storm/Insight3.m", + "sha256": "857f20748641b709c491b069e3f319aa697629b9126c4f1d3cf3464036cc55eb", + "language": "MATLAB", + "lines": 1328, + "truncated": false, + "block": 1, + "row": 4337 + }, + { + "path": "load_files/storm/load_microscopy_file.m", + "sha256": "bc56a0f9516e2e3257e332d8f6231564f52625d0f98ad86b08b72b7b106017dd", + "language": "MATLAB", + "lines": 200, + "truncated": false, + "block": 1, + "row": 3920 + }, + { + "path": "load_files/storm/load_stack_tiff_file_STORM.m", + "sha256": "e09d738941e3a0e3e7c8ab35921022469fd772385efb235d091bfd1bd620b408", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 1, + "row": 3030 + }, + { + "path": "load_files/tracks/load_SpotOn.m", + "sha256": "8d2e3b9c12bb4815931da429ec81be7fdbc971ab63ba306c7d5c0c57afe6adee", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 1, + "row": 2805 + }, + { + "path": "load_files/tracks/load_XML.m", + "sha256": "e12d11b6e7bca42c3320e3080683ebf50bb1a8183e1796efbc804a2b79e32b88", + "language": "MATLAB", + "lines": 209, + "truncated": false, + "block": 1, + "row": 3918 + }, + { + "path": "load_files/tracks/tracks_convert_space_time_units.m", + "sha256": "f4b1474cbdd622289bfcfd71674ab1a7f4aeaf4fc36d00757075c82287e1b0e1", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 1, + "row": 2437 + }, + { + "path": "loc_analysis/colocalization_module.m", + "sha256": "920fea7ec0a7ca6e9eb1047142c3fbcbfb6ff52c669cfbc5780ed5c6f1dddeaa", + "language": "MATLAB", + "lines": 214, + "truncated": false, + "block": 1, + "row": 4014 + }, + { + "path": "loc_analysis/colocalization_module_New.m", + "sha256": "b2dd48cb2b3931a9d4e417f5299fa3212680ff0679718b0f75e44a2f78c78813", + "language": "MATLAB", + "lines": 778, + "truncated": false, + "block": 1, + "row": 4329 + }, + { + "path": "loc_analysis/colocalization_statistics_module.m", + "sha256": "9bff8f1eb78a1c84284d46c5e316ba8b7078bb92a3562a862d568f81e6d3f571", + "language": "MATLAB", + "lines": 344, + "truncated": false, + "block": 1, + "row": 4196 + }, + { + "path": "loc_analysis/delauny_segmentation/loc_list_delauny_segmentation.m", + "sha256": "9465a4f9fd82a323bd116a4eb14243ffa6e182832fe43c4dce893678aefdf5ad", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 1, + "row": 3084 + }, + { + "path": "loc_analysis/delauny_segmentation/loc_list_density_plot_delauny_triangulation.m", + "sha256": "1a7f97787bd7b8a6ff3beed6ec80c77f5b3e46621d05a4bc17c7d4795cb23149", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 1, + "row": 3216 + }, + { + "path": "loc_analysis/loc_list_add_by_number.m", + "sha256": "da98483dc1efe0a2fb41b4f84c0052de0bb0c4c6a7bbc89047e32db888173086", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 1, + "row": 2499 + }, + { + "path": "loc_analysis/loc_list_add_scale_bar.m", + "sha256": "94d946398436617a20a7be4a354c87be6c64f09712c229343de4d86bb8ef2536", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 1, + "row": 2657 + }, + { + "path": "loc_analysis/loc_list_calculate_boundary_area.m", + "sha256": "b7e932fd54aa007ae2115708c371e253bc14fa69db5ae766a8d333924130a3c7", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 1, + "row": 2394 + }, + { + "path": "loc_analysis/loc_list_center_data.m", + "sha256": "3d8edaa41aca8f1b30beef497244baf98ee889a80de3e871f888e2d97d380735", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 1, + "row": 2452 + }, + { + "path": "loc_analysis/loc_list_change_colormap_limits.m", + "sha256": "bff99f722f0de80d4e4d4717e301c96778b56915e7fde1ebab0c9755a953e734", + "language": "MATLAB", + "lines": 12, + "truncated": false, + "block": 1, + "row": 2398 + }, + { + "path": "loc_analysis/loc_list_clusters_area_histogram.m", + "sha256": "bfb9366f8f1ea79738dcb9bbbda150d354b44ee2cc8dbf7340303a1ca1d46a38", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 1, + "row": 2722 + }, + { + "path": "loc_analysis/loc_list_clusters_aspet_ratio_table.m", + "sha256": "ad9308e62589a5000630a13f952230a28491180a8804cc60bcc4fd9d5e647985", + "language": "MATLAB", + "lines": 70, + "truncated": false, + "block": 1, + "row": 3269 + }, + { + "path": "loc_analysis/loc_list_clusters_count_clusters.m", + "sha256": "1a912b87256514a04114e47ac8668b2e0b3724810688082714c2a27b1e926ae8", + "language": "MATLAB", + "lines": 9, + "truncated": false, + "block": 1, + "row": 2435 + }, + { + "path": "loc_analysis/loc_list_clusters_data_table.m", + "sha256": "6453e3469fa2ce3d11cf6f98e3d797f00df96b34ddd20da5ef5624683e16cdce", + "language": "MATLAB", + "lines": 83, + "truncated": false, + "block": 1, + "row": 3425 + }, + { + "path": "loc_analysis/loc_list_clusters_data_table_short.m", + "sha256": "59c5b8cb54ee4166f02c991a1c3fb002da990645dc73801b121875602873b8e1", + "language": "MATLAB", + "lines": 72, + "truncated": false, + "block": 1, + "row": 3301 + }, + { + "path": "loc_analysis/loc_list_clusters_density_histogram.m", + "sha256": "4d8785b28abdecd677118a8f1258befb489b9e996e4f504c79b485f80152c81c", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 1, + "row": 2784 + }, + { + "path": "loc_analysis/loc_list_clusters_filter_area.m", + "sha256": "1afeb3d9efbb858ed57301f27149147914bab8f4a88b0922344cf6789d15a4f0", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 1, + "row": 3082 + }, + { + "path": "loc_analysis/loc_list_clusters_filter_aspect_ratio.m", + "sha256": "4aad49c2612fe993b025cf291e628046c5d0d158845de025f867f6ed47c4f218", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 1, + "row": 3196 + }, + { + "path": "loc_analysis/loc_list_clusters_filter_no_of_locs.m", + "sha256": "d28f76715869a6bdadbbde8678099a48c50cfb118cd8ce5766afeeeeb99ed826", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 1, + "row": 3104 + }, + { + "path": "loc_analysis/loc_list_clusters_filter_random_selection.m", + "sha256": "06b95322b178b4775b48ec22e877a6c4d5d4ab413d7f1ce7f61d6849804855f2", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 1, + "row": 3061 + }, + { + "path": "loc_analysis/loc_list_clusters_no_of_locs_histogram.m", + "sha256": "a92f5ddb8176b056f89e990f1e4c88ca6825d6566ce46c4d53a570f02f7b60ee", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 1, + "row": 2744 + }, + { + "path": "loc_analysis/loc_list_clusters_norm_density_histogram.m", + "sha256": "301299b7a0f9238652e364dc9833bd15d5cf6358ab76008f804ade9d15610b04", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 1, + "row": 2777 + }, + { + "path": "loc_analysis/loc_list_clusters_remove_outliers.m", + "sha256": "59e9d7921ccfdc9cb16d7662a68dc54c1fcf6b4fe3821457a68e202574b25d58", + "language": "MATLAB", + "lines": 357, + "truncated": false, + "block": 1, + "row": 4158 + }, + { + "path": "loc_analysis/loc_list_clusters_remove_outliers_updated.m", + "sha256": "3abfcde12bf61dc53795a4939ce03332554183c2e50aa9b4f4e6fa41c4dab64f", + "language": "MATLAB", + "lines": 233, + "truncated": false, + "block": 1, + "row": 4078 + }, + { + "path": "loc_analysis/loc_list_clusters_scatter_no_of_locs_area.m", + "sha256": "e260469d32fd6cc4d807a0aeb5d982f14d67bd12a4c560a269829484aaacf677", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 1, + "row": 2918 + }, + { + "path": "loc_analysis/loc_list_clusters_total_clusters_area.m", + "sha256": "af6fc083878d0c94b58a32099cad63679578ec2849f63eb90d4dd67f61b020c8", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 1, + "row": 2780 + }, + { + "path": "loc_analysis/loc_list_crop.m", + "sha256": "3c8a56f3ad7616f4f2447a4f7ffabb3863df7981104a36946bb486d23b4bb27a", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 1, + "row": 2796 + }, + { + "path": "loc_analysis/loc_list_dbscan_elbow.m", + "sha256": "44bcb0d55fa17c2f169aa19b2caa381add4be1c66bdc5cb48a8c8d596882ea47", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 1, + "row": 3303 + }, + { + "path": "loc_analysis/loc_list_dbscan_regular.m", + "sha256": "b915a354be93d18be705a6e3fd59b83f48bbbb1a81e3a31dde64cd72f8a5812a", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 1, + "row": 3158 + }, + { + "path": "loc_analysis/loc_list_distance_clustering.m", + "sha256": "0faf3b68346ea8e7698e1420615f6b7a0111df42d89b1bd304dbc0f281f584c4", + "language": "MATLAB", + "lines": 111, + "truncated": false, + "block": 1, + "row": 3513 + }, + { + "path": "loc_analysis/loc_list_down_sample.m", + "sha256": "8d39f4585dbc5af5f39abe50d4abe8e03a5af76951c42c7f94abe19c69bf69c8", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 1, + "row": 2501 + }, + { + "path": "loc_analysis/loc_list_down_sample_data.m", + "sha256": "b537e552ddd84e23f052d18c42db1078223c78f09e857bf70025ff44907048f7", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 1, + "row": 2748 + }, + { + "path": "loc_analysis/loc_list_extract_clusters.m", + "sha256": "fa35069f7074ce8544d03de8e9fccd3703ca6f0cb7aa0d79e32f9fd62f28427a", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 1, + "row": 2859 + }, + { + "path": "loc_analysis/loc_list_extract_clusters_from_data.m", + "sha256": "2c73b1fdd740f92e0a5aae91a723f47f65aa8703bf13222ec9f78e0554d6fb4b", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 1, + "row": 2603 + }, + { + "path": "loc_analysis/loc_list_extract_features.m", + "sha256": "2e97bf02a2ed45f71ce23cb8b005c3eda111ad14c7daae9e7b5fe1b903350048", + "language": "MATLAB", + "lines": 258, + "truncated": false, + "block": 1, + "row": 3926 + }, + { + "path": "loc_analysis/loc_list_extract_parameters.m", + "sha256": "9b3ec7dbe96166b1cc2f528468b9f21761eceafe751349c613950b453d65a746", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 1, + "row": 2652 + }, + { + "path": "loc_analysis/loc_list_find_clusters.m", + "sha256": "2cf9ab2b43b6eb3e2c5e04370354ef813f4a533f9d582626ccd9197fde1cb88e", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 1, + "row": 2488 + }, + { + "path": "loc_analysis/loc_list_flip_lr.m", + "sha256": "cd38960395654139ad0020718b3c0f6c2d547e7bd151f0f4c68f611c4318eeb7", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 1, + "row": 2465 + }, + { + "path": "loc_analysis/loc_list_flip_ud.m", + "sha256": "cc50725baee16289a46b9439e3c7b89eda299c0f960a668f3c46104aeaa09d2c", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 1, + "row": 2464 + }, + { + "path": "loc_analysis/loc_list_gravitational_clustering.m", + "sha256": "3655611e1f5447c37ba8ca557b4a76c6c47abffcd17197bfa3b32b43a323ce21", + "language": "MATLAB", + "lines": 194, + "truncated": false, + "block": 1, + "row": 3775 + }, + { + "path": "loc_analysis/loc_list_k_means.m", + "sha256": "e905eb5499d474578d28414bb2c8990f0e016e82c6ac03371a1721eb855c982d", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 1, + "row": 2875 + }, + { + "path": "loc_analysis/loc_list_knn_density_map.m", + "sha256": "a58536c829540307ba8a6be869f95ac0d16f90c02d94b9a6835e05414eae88ae", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 1, + "row": 2883 + }, + { + "path": "loc_analysis/loc_list_make_same_color.m", + "sha256": "4d09108b3f1aa1946b795869eef231812232bd6b6e44d92ad82f70391b97aa58", + "language": "MATLAB", + "lines": 9, + "truncated": false, + "block": 1, + "row": 2362 + }, + { + "path": "loc_analysis/loc_list_montage.m", + "sha256": "32d545eb4beb4e2049fe173fd769042bbe01fb795d45f7c9570d93f14dab4455", + "language": "MATLAB", + "lines": 66, + "truncated": false, + "block": 1, + "row": 3221 + }, + { + "path": "loc_analysis/loc_list_multiply_by_number.m", + "sha256": "120fe253e80a0c1b989f8478146d17e8460f1d8168da1dd90f724e916386c648", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 1, + "row": 2505 + }, + { + "path": "loc_analysis/loc_list_pile_data.m", + "sha256": "4c0bcb8f6e3f4f3ab9143f9697a491d490a3a6b2060db295abfae40f9755e9f7", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 1, + "row": 2605 + }, + { + "path": "loc_analysis/loc_list_plot.m", + "sha256": "47dc6b6208de5b8cd211e93fd971426cb61adca43989de42793e5895dbe4500e", + "language": "MATLAB", + "lines": 421, + "truncated": false, + "block": 1, + "row": 4224 + }, + { + "path": "loc_analysis/loc_list_plot_random.m", + "sha256": "c4e563689caccc2e688c0a914dff4ad26168bd74d370bfdcaea3cd55f74ec9e6", + "language": "MATLAB", + "lines": 129, + "truncated": false, + "block": 1, + "row": 3698 + }, + { + "path": "loc_analysis/loc_list_remove_noise.m", + "sha256": "fa4319b5b6af95fc0679c45b3ba3d091f4a904f7973d7a37215e0c80470c3921", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 1, + "row": 3109 + }, + { + "path": "loc_analysis/loc_list_roi.m", + "sha256": "7e12c4eb1c9225c725ce3459b99ef5f52e8a7ee06961f44402dad31535e9f304", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 1, + "row": 2616 + }, + { + "path": "loc_analysis/loc_list_roi_DualChannel.m", + "sha256": "2d6b0e1b0e667ccbe08df4eaec6307dc3a877d326b6f43476f03747b7f7dee63", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 1, + "row": 2950 + }, + { + "path": "loc_analysis/loc_list_roi_module.m", + "sha256": "57f33b77e9786d91c6a2577239130ab973e6510a63c23207f6bbdd0c6d9acd3c", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 1, + "row": 3234 + }, + { + "path": "loc_analysis/loc_list_rotate_cm.m", + "sha256": "3d06454a0ff7a59e858a50a9cf845e7d8ad9c4f2edef89f3816db1bf984d1e94", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 1, + "row": 2860 + }, + { + "path": "loc_analysis/loc_list_save_bin.m", + "sha256": "9b07c2ef657409642d2eed06a0c79db3f144f41e0e135cb87d68bb24562f9f7f", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 1, + "row": 2925 + }, + { + "path": "loc_analysis/loc_list_save_png.m", + "sha256": "2349ddd7beedb95980a47dcac71703e5c4fe5d491933eee13b7e19a797c9b6d4", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 1, + "row": 3116 + }, + { + "path": "loc_analysis/loc_list_show_in_channels.m", + "sha256": "310fff674d179e0859f7a548d801b18200dbdf35821648c58ae6fb69dadd4f02", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 1, + "row": 2508 + }, + { + "path": "loc_analysis/loc_list_three_channel.m", + "sha256": "8122be01e45eaba24085e31729c2a9cc79dcf3ec0a155ff12b26aafdebb0a24d", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 1, + "row": 3069 + }, + { + "path": "loc_analysis/loc_list_three_channel_Rotated.m", + "sha256": "e3603cf4b14657f869899ae5abd1a798088e81192b5976879d8a106ada867049", + "language": "MATLAB", + "lines": 56, + "truncated": false, + "block": 1, + "row": 3155 + }, + { + "path": "loc_analysis/loc_list_two_channel.m", + "sha256": "c85cf380abd055a5ee99538a53b47233588032a4014cb5ffcb5ccedc536a446a", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 1, + "row": 3154 + }, + { + "path": "loc_analysis/loc_list_voronoi_density_map.m", + "sha256": "29b5b03acea184a48cb608ede9e5a21adf3721c193f47d7f01bd8216dd3f11c7", + "language": "MATLAB", + "lines": 139, + "truncated": false, + "block": 1, + "row": 3689 + }, + { + "path": "loc_analysis/loc_list_voronoi_plot.m", + "sha256": "2f94610b7fb675fefbd16776a41947703e86413ee863fc31b3a32e500927a64d", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 1, + "row": 3073 + }, + { + "path": "loc_analysis/to_review/loc_list_break_data.m", + "sha256": "a2f2e7ee3d1e6c8c9105188181457d79a6255b24e9bd04146af9db2ffca0e02f", + "language": "MATLAB", + "lines": 96, + "truncated": false, + "block": 1, + "row": 3427 + }, + { + "path": "loc_analysis/to_review/loc_list_color_histogram.m", + "sha256": "74ad84a92a540ec3ba5404fe2e37113eeb3a6cbfbfc03c1b979488fa704111de", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 1, + "row": 3215 + }, + { + "path": "loc_analysis/to_review/loc_list_delauny_triangulation_plot.m", + "sha256": "999cdae0edd17cc0ea57c66be7057aa135e09024465ed6e669bf38e05ee093cc", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 1, + "row": 3357 + }, + { + "path": "loc_analysis/to_review/loc_list_density_plot_voronoi_areas.m", + "sha256": "0cb4fe7d38cdd25c2ea25d2a71579eb80da3665f1a0d5f8a5645218be76c91a2", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 1, + "row": 2968 + }, + { + "path": "loc_analysis/to_review/loc_list_filter_no_of_locs.m", + "sha256": "693026dcda520bd189d3088d9ffeb433e315bbd3fecdd74f1002740d45b3868d", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 1, + "row": 2599 + }, + { + "path": "loc_analysis/to_review/loc_list_voronoi_plot.m", + "sha256": "d88945776a4a492f9adef9bf661a9fd2d5c6544d4032dc19f632c0212451faea", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 1, + "row": 2871 + }, + { + "path": "loc_analysis/voronoi_segmentation/construct_clusters.m", + "sha256": "e46c1ed51ad8a32c80e43820c9bd2ed884b72c196911d56bca655d5cfa96f2d9", + "language": "MATLAB", + "lines": 122, + "truncated": false, + "block": 1, + "row": 3612 + }, + { + "path": "loc_analysis/voronoi_segmentation/extra/Locs2Mask.m", + "sha256": "e29b2ecde4d5137a4d25532d87636c748ea93387b22455f79c65102959b7dffc", + "language": "MATLAB", + "lines": 114, + "truncated": false, + "block": 1, + "row": 3487 + }, + { + "path": "loc_analysis/voronoi_segmentation/extra/NND_cluster.m", + "sha256": "8951b94a7972131517e085e638f9106dfaec32c1b280f991bb35d36bc9a97f29", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 1, + "row": 3056 + }, + { + "path": "loc_analysis/voronoi_segmentation/extra/VoronoiAreas.m", + "sha256": "5900615f25044ebfe427a0f12776677db860f6722d0f8f26900d322c8ee68ffb", + "language": "MATLAB", + "lines": 217, + "truncated": false, + "block": 1, + "row": 3946 + }, + { + "path": "loc_analysis/voronoi_segmentation/extra/VoronoiMonteCarlo_JO.m", + "sha256": "88f5553c8c197bd7eeb073f6137da28f3736e84900500f23551a1ad95f137625", + "language": "MATLAB", + "lines": 153, + "truncated": false, + "block": 1, + "row": 3761 + }, + { + "path": "loc_analysis/voronoi_segmentation/extra/findVoronoiNeighbors.m", + "sha256": "f1b0811f62985384e53dd95aa740b1fb64a80d11f5a3001f658b16fe1196c4f3", + "language": "MATLAB", + "lines": 70, + "truncated": false, + "block": 1, + "row": 3279 + }, + { + "path": "loc_analysis/voronoi_segmentation/extra/interpercentilerange.m", + "sha256": "a4ec85f36ca977fd892921c5313fb5b478550bc9f7322054803c6e856ded43b5", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 1, + "row": 2589 + }, + { + "path": "loc_analysis/voronoi_segmentation/extra/iterativeVoronoiSegmentation.m", + "sha256": "fbdf258c945f755e4a2c8e661b14a57a3c13d4acb8082508b43a4070e6a420f5", + "language": "MATLAB", + "lines": 226, + "truncated": false, + "block": 1, + "row": 4038 + }, + { + "path": "loc_analysis/voronoi_segmentation/extra/plotVoronoiMCdat.m", + "sha256": "5492b5d946c8e7332cf26ec7d754ef7a8bbe6aa7ac34a9b088d3da35a35ed2d8", + "language": "MATLAB", + "lines": 68, + "truncated": false, + "block": 1, + "row": 3180 + }, + { + "path": "loc_analysis/voronoi_segmentation/extra/slideFilter.m", + "sha256": "7da3f5d37edc193ee2e9b63cdb741a12484040aa61aabe66aa6cd4c89dba5136", + "language": "MATLAB", + "lines": 135, + "truncated": false, + "block": 1, + "row": 3565 + }, + { + "path": "loc_analysis/voronoi_segmentation/loc_list_construct_voronoi_structure.m", + "sha256": "f0c53b068c9babd58d5bac204daf9f5391638a12df8bfac421df76e9fff93064", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 1, + "row": 3052 + }, + { + "path": "loc_analysis/voronoi_segmentation/loc_list_voronoi_clusters_boundary_points_plot.m", + "sha256": "621dc5761e93c384d49b862cf40b6f8734dd81986196a676277be8e809f936a5", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 1, + "row": 2966 + }, + { + "path": "loc_analysis/voronoi_segmentation/loc_list_voronoi_clusters_individual_plot.m", + "sha256": "ede90cb14e01617656f5d28f236487912437c6c263c7df17447ce438785a0bc5", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 1, + "row": 3392 + }, + { + "path": "loc_analysis/voronoi_segmentation/loc_list_voronoi_clusters_loc_list_plot.m", + "sha256": "772f3bfdba2c349a817b30bf3730d732056234e211d2d45f13e8ba25ed3b5b4f", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 1, + "row": 2660 + }, + { + "path": "loc_analysis/voronoi_segmentation/loc_list_voronoi_monte_carlo.m", + "sha256": "9457bf5582197d416c75c0e2600ddbf711940429b0d6e182e068ed646fc25b5f", + "language": "MATLAB", + "lines": 46, + "truncated": false, + "block": 1, + "row": 3224 + }, + { + "path": "loc_analysis/voronoi_segmentation/loc_list_voronoi_segmentation.m", + "sha256": "92911729ffdd3ad552c464c657cfc2a5176aabb69d23fc110cb4d437458a272b", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 1, + "row": 2451 + }, + { + "path": "loc_analysis/voronoi_segmentation/loc_list_voronoi_seperate_based_on_percentile.m", + "sha256": "86e68a01b0648224241b7c1284a5ce3c0e61bf8ffdba55ade376be0d7c78cb49", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 1, + "row": 2908 + }, + { + "path": "loc_analysis/voronoi_segmentation/loc_list_voronoi_seperate_based_on_value.m", + "sha256": "f2e75c9490644c6aaa6e79c850bbf08a54fff3b139f4282a27891be4bdd03745", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 1, + "row": 2874 + }, + { + "path": "loc_analysis/voronoi_segmentation/voronoi_area_percentiles_inside.m", + "sha256": "16025f2ef445eb106380ee409e59538e081c44f7e00035e01fdc5140867883f0", + "language": "MATLAB", + "lines": 204, + "truncated": false, + "block": 1, + "row": 3959 + }, + { + "path": "loc_analysis/voronoi_segmentation/voronoi_data_get_voronoi_cluster.m", + "sha256": "3bccb1eb056f89b7b83d4c19f996333b5674d0e5ab6bc6b2c0e50682d6b6a6c3", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 1, + "row": 2772 + }, + { + "path": "loc_analysis/voronoi_segmentation/voronoi_data_plot.m", + "sha256": "aedfb166ac187bb00856bddfa45687e1cf76a1782f3f644b58e05f404a57214e", + "language": "MATLAB", + "lines": 308, + "truncated": false, + "block": 1, + "row": 4117 + }, + { + "path": "shape_classification/cluster_classes.m", + "sha256": "04ef189381d70e1ecaa911499066cd3379444b5900ad1bb51fef22fc2ec8cb6f", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 1, + "row": 2537 + }, + { + "path": "shape_classification/iterative_clustering/check_classes_in_bubble.m", + "sha256": "3dc0a2011b4b5e83963d91f021b33f3b189b07ee77f3d86e4a4c0ebeeb0ce06b", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 1, + "row": 2696 + }, + { + "path": "shape_classification/iterative_clustering/classify_clusters.m", + "sha256": "e44935d8fd3e0068c66548e111aba159f0253677b5eab9b640b7c891746c3b7b", + "language": "MATLAB", + "lines": 38, + "truncated": false, + "block": 1, + "row": 3001 + }, + { + "path": "shape_classification/iterative_clustering/find_complete_linkage.m", + "sha256": "bb54620c35661d6a4e73fddb889516f3195489bef6829dd259967e0c46e73a3b", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 1, + "row": 2837 + }, + { + "path": "shape_classification/iterative_clustering/find_groups.m", + "sha256": "2773595f789d2698b55f331637c91552a1556ec90f7ce22022c6f3a81d98e78c", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 1, + "row": 2519 + }, + { + "path": "shape_classification/iterative_clustering/group_classes.m", + "sha256": "f8e85b8a2ea2cd9ef38d20ec7fd1b5d4c20df78e49c88f049b1c95c25f3df508", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 1, + "row": 2410 + }, + { + "path": "shape_classification/iterative_clustering/plot_classes_to_group.m", + "sha256": "7c00158031d588ae6208efff1e9260edf6ac41104e4f99038b60493bce1c039e", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 1, + "row": 2702 + }, + { + "path": "shape_classification/iterative_clustering/plot_size_clusters_iteraion.m", + "sha256": "bec6beeb84cffc87c6ba312fcccfe5d772ec75a1bd4c2d40495b87917d8b3c51", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 1, + "row": 2575 + }, + { + "path": "shape_classification/iterative_clustering/shape_classification_iterative_clustering.m", + "sha256": "794c93fc234fc85575fe6129346b5864a9d08dbedef11db007b60323cc9423ef", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 1, + "row": 3035 + }, + { + "path": "shape_classification/iterative_clustering/shape_classification_iterative_clustering_input_coeff_var.m", + "sha256": "672edf74f623e7de59a4901120f8fd7086d38f0704b604fefadc3d2dd48992ff", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 1, + "row": 2529 + }, + { + "path": "shape_classification/iterative_clustering/shape_classification_iterative_distance_clustering.m", + "sha256": "019339db29d5aafa62260b0aa30fb1357223d9792293f9cb77a190bdc930b58e", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 1, + "row": 2557 + }, + { + "path": "shape_classification/iterative_clustering/shape_classification_iterative_distance_coeff_var_clustering.m", + "sha256": "2117b6fe356b69818016d9da338ec45326cb6748857eee7b2537179ddf23d841", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 1, + "row": 2770 + }, + { + "path": "shape_classification/iterative_clustering/shape_classification_iterative_linkage_clustering.m", + "sha256": "d9edb108354cd3aeda7b76fd5b59bb5827a484c3b77ee885a14dc28db133eead", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 1, + "row": 2553 + }, + { + "path": "shape_classification/iterative_clustering/shape_classification_iterative_linkage_coeff_var_clustering.m", + "sha256": "24df3683b62691e98a9d0ade6df4fb4c8ab6d55967d61e87d398081c4fcd1b42", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 1, + "row": 2767 + }, + { + "path": "shape_classification/iterative_clustering/shape_classification_iterative_pairwise_clustering.m", + "sha256": "3203787d071702a7904ed6d8952b5dbc7e91466b815f9d1133f82f496a9dc2b3", + "language": "MATLAB", + "lines": 82, + "truncated": false, + "block": 1, + "row": 3298 + }, + { + "path": "shape_classification/shape_classification_clustergram.m", + "sha256": "66531b5328e5c49fbceeabc3083b1d3790e14a3a5edfb05c3870de4174e3a278", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 1, + "row": 2482 + }, + { + "path": "shape_classification/shape_classification_coeff_of_variation.m", + "sha256": "06485eae759fba1f0db9e65bbd72bbef0998081803e2df119c37b23ae531529c", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 1, + "row": 2631 + }, + { + "path": "shape_classification/shape_classification_decision_boundary_plot.m", + "sha256": "9eb7897bae6ecf470c82538c4bbbe9c6766a50645c905c566c11377e476397e0", + "language": "MATLAB", + "lines": 174, + "truncated": false, + "block": 1, + "row": 3912 + }, + { + "path": "shape_classification/shape_classification_dendrogram_graph.m", + "sha256": "52b007ab7994b40835fce6ccf6e5a83db4f93a4fa4b06c313a64c2a39b142125", + "language": "MATLAB", + "lines": 151, + "truncated": false, + "block": 1, + "row": 3725 + }, + { + "path": "shape_classification/shape_classification_ellipses_plot.m", + "sha256": "cd7d8f20af4d221417bc0babe59b7ea70435cd28cbde9d940f24f50c792068f0", + "language": "MATLAB", + "lines": 226, + "truncated": false, + "block": 1, + "row": 4074 + }, + { + "path": "shape_classification/shape_classification_extract_classes.m", + "sha256": "9a0b47f98202ed9dd0398f4630c6567a06f84a37232475f81bdc2e99874d317f", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 1, + "row": 2779 + }, + { + "path": "shape_classification/shape_classification_features_box_plot.m", + "sha256": "4a60bb42cd2e64498009db3510468e7c3755cf6966be6e9e844ba3c87783fb36", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 1, + "row": 2944 + }, + { + "path": "shape_classification/shape_classification_features_info.m", + "sha256": "4c68846e6b34bec8182747701d3be0d271237d7c5cb218bf63777533292b6772", + "language": "MATLAB", + "lines": 49, + "truncated": false, + "block": 1, + "row": 3209 + }, + { + "path": "shape_classification/shape_classification_filter_area.m", + "sha256": "f78464e5b11eca026e734a26f8c8569701328cdde0cca00f2c7d348f5cf38bc4", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 1, + "row": 2939 + }, + { + "path": "shape_classification/shape_classification_filter_aspect_ratio.m", + "sha256": "1c1bbe2259d3281c05fe6498eb0554ce2e659006a7b7cfcc6701628fd8a96d45", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 1, + "row": 2808 + }, + { + "path": "shape_classification/shape_classification_filter_mass.m", + "sha256": "da605d3552e8ea8fe7d51d4785d906309626b2cbd9007def27995ac012bc530f", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 1, + "row": 2940 + }, + { + "path": "shape_classification/shape_classification_finding_linkage.m", + "sha256": "36432d32d6eda372b4dd87de11043529a71fefe4931e7589a0ea436d7472b42d", + "language": "MATLAB", + "lines": 7, + "truncated": false, + "block": 1, + "row": 2377 + }, + { + "path": "shape_classification/shape_classification_gravitational_clustering.m", + "sha256": "11f4d60c6b190fb05b2ae7b35d8f1759587ac9457e020eaec58748af356904dd", + "language": "MATLAB", + "lines": 209, + "truncated": false, + "block": 1, + "row": 3890 + }, + { + "path": "shape_classification/shape_classification_hierarchical.m", + "sha256": "af1bc820b6ef14b4637f19dd3ec665e2206f57f56af1d3349e96dcbe191414a1", + "language": "MATLAB", + "lines": 74, + "truncated": false, + "block": 1, + "row": 3364 + }, + { + "path": "shape_classification/shape_classification_kmeans.m", + "sha256": "7e6ea9af0cbba10f86b39d59e53ddd7abce1c1393ec89e274f9b8ecb124fd831", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 1, + "row": 2615 + }, + { + "path": "shape_classification/shape_classification_merge_shape_classes.m", + "sha256": "e82bb2fea406f1291b9de88a929127d6e140b32249d975df617972060cb3f55e", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 1, + "row": 2642 + }, + { + "path": "shape_classification/shape_classification_network_graph.m", + "sha256": "7957643d7aca3e0692246bc937b0333b24f68192be8ab68e63dce82e059f5bc0", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 1, + "row": 2872 + }, + { + "path": "shape_classification/shape_classification_normalized_parameters.m", + "sha256": "94b86f4809fa3600c985b5a4f5db0a68ad65e50dc9ffaef0285f55f4b656c08f", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 1, + "row": 2318 + }, + { + "path": "shape_classification/shape_classification_pca_analysis.m", + "sha256": "f3f4db6688b94f6610cd31f41859a5fbb2790092121d1c7b6d85a04f50589827", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 1, + "row": 3059 + }, + { + "path": "shape_classification/shape_classification_plot.m", + "sha256": "3d0086617da40ebab2c496fe2e9bdbe9fc6b68d01d6e4d383de17786c439b5c9", + "language": "MATLAB", + "lines": 226, + "truncated": false, + "block": 1, + "row": 4009 + }, + { + "path": "shape_classification/shape_classification_save_results_bin.m", + "sha256": "92a17a12f411ff39543f578d608e275b670014d1eb8e018fb9518703902f49e1", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 1, + "row": 2878 + }, + { + "path": "shape_classification/shape_classification_save_results_jpg.m", + "sha256": "480806a4bfbb812beac9b1cded624600343ad2e08e77379de5cdc1ed2d83a5ef", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 1, + "row": 2958 + }, + { + "path": "shape_classification/shape_classification_save_results_selected_clusters.m", + "sha256": "13072b3b03d1bf261cd26ee722828324be9d6a1fb2335e19d14b2c8db7fda124", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 1, + "row": 2936 + }, + { + "path": "shape_classification/shape_classification_set_class_color.m", + "sha256": "34bd4d6b7382930f3d125defaf027a9909842818e1d0f6ae010158544bb5845a", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 1, + "row": 2688 + }, + { + "path": "shape_classification/shape_classification_som.m", + "sha256": "ec81b923f18f84d59ab948831e9b1f9c1b64d23dbfd97c3895d51d512cc655d6", + "language": "MATLAB", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2623 + }, + { + "path": "shape_classification/shape_classification_supervised_clustering.m", + "sha256": "40ad9d2ee84d48fa805993142579fe4ef196d434ee3b886cd5be37ca138fcabb", + "language": "MATLAB", + "lines": 124, + "truncated": false, + "block": 1, + "row": 3545 + }, + { + "path": "simulations/loc_list_gaussian_point_pattern_simulation.m", + "sha256": "22994c56f5f7b4914fe4a7c0afe388e6102df9ea19ac37996b33bfd81063e2c8", + "language": "MATLAB", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2716 + }, + { + "path": "simulations/loc_list_random_point_pattern_simulation.m", + "sha256": "2a111fa78078e51866a0b6e7dfc9a45befde3e46d38bac187e70cfffbf3aeb63", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 1, + "row": 2571 + }, + { + "path": "simulations/loc_list_storm_image_simulation.m", + "sha256": "e60e944dd0de2179b0b6941a25ee5ee9ce506d71dee142e82d4bedab561e1075", + "language": "MATLAB", + "lines": 107, + "truncated": false, + "block": 1, + "row": 3598 + }, + { + "path": "simulations/spt_simulate_brownian_motion.m", + "sha256": "b8dead2514b3f0fb0d56690a63cc8c27b96e8b0469c10586b121329ac518f9f5", + "language": "MATLAB", + "lines": 161, + "truncated": false, + "block": 1, + "row": 3860 + }, + { + "path": "simulations/spt_simulate_confined_brownian_motion.m", + "sha256": "cfc61d6a037a3d592af10e8f610bedcf4c60ec19a5421420b75439d1d5fb57a4", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 1, + "row": 2905 + }, + { + "path": "simulations/spt_simulate_directed_brownian_motion.m", + "sha256": "a8be9b04297dcfd83d1b3c51552c647abc035dc468a0668d4a1fc83525feecee", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 1, + "row": 2882 + }, + { + "path": "simulations/spt_simulate_random_brownian_motion.m", + "sha256": "679116afc8bc40fcc2dfda042f2721c4dd5d465d5842a2d0cfacbf52f8d3bfe4", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 1, + "row": 2734 + }, + { + "path": "single_particle_tracking/SpotOn/C_AbsorBoundAUTO.m", + "sha256": "ba31caa711b106cf18ef9b47c2341e6421f77153146e6d463b357942abbb9bf2", + "language": "MATLAB", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2586 + }, + { + "path": "single_particle_tracking/SpotOn/GenerateModelFitforPlot.m", + "sha256": "2a6cd3c18864fb403e843290dd0751a67d5da02de226b75f6d583638503b88c7", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 1, + "row": 3266 + }, + { + "path": "single_particle_tracking/SpotOn/GeneratePlotTitle.m", + "sha256": "941cc62b7e22c1d47ea9c651043bd5767134322627bc2ae8321554c008497665", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 1, + "row": 3333 + }, + { + "path": "single_particle_tracking/SpotOn/MatchZ_corr_coeff.m", + "sha256": "1add1163d83ddb8bbbf3ec8c0214158b8f7d6958cb085d3f32424119bc0f2b57", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 1, + "row": 3031 + }, + { + "path": "single_particle_tracking/SpotOn/ModelFitting_main.m", + "sha256": "3e5971351bcb8aa981bcec135463b3775898f910fea1233b6825e59d350b4a64", + "language": "MATLAB", + "lines": 155, + "truncated": false, + "block": 1, + "row": 3873 + }, + { + "path": "single_particle_tracking/SpotOn/Model_2State.m", + "sha256": "ba7ac591c7df2e247f7b25c7b5a6252750d7a5a44adb56f56ca8f41c6b813e10", + "language": "MATLAB", + "lines": 106, + "truncated": false, + "block": 1, + "row": 3431 + }, + { + "path": "single_particle_tracking/SpotOn/Model_2State_fitLocError.m", + "sha256": "1f3145c7e643ec285015004c27db528aa987221f30cdbeb1c909032314555858", + "language": "MATLAB", + "lines": 105, + "truncated": false, + "block": 1, + "row": 3445 + }, + { + "path": "single_particle_tracking/SpotOn/Model_3State.m", + "sha256": "c65c65394aa7dc45344374d34c819b1d3db4febf4ff08d5f4508cf4afa2c87ab", + "language": "MATLAB", + "lines": 127, + "truncated": false, + "block": 1, + "row": 3610 + }, + { + "path": "single_particle_tracking/SpotOn/Model_3State_fitLocError.m", + "sha256": "9175500dd4adafb355e8be5f529daf4201f826ec07f0b9c28afd27ca7bcbac31", + "language": "MATLAB", + "lines": 127, + "truncated": false, + "block": 1, + "row": 3617 + }, + { + "path": "single_particle_tracking/SpotOn/compile_histograms_single_cell.m", + "sha256": "06bd3a3b23ee0b72eae47c049a3d155b154ca5ef6cdd858a17f201bc24552d9d", + "language": "MATLAB", + "lines": 142, + "truncated": false, + "block": 1, + "row": 3845 + }, + { + "path": "single_particle_tracking/spt_combine_tracks.m", + "sha256": "242d9cfd450b4231db93d37e0854a35aa9fd7e5d305bcb889f8eabcfab8cb204", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 1, + "row": 2474 + }, + { + "path": "single_particle_tracking/spt_compute_mean_msd.m", + "sha256": "89102686d55925122ee7a31789344241b850ce4f02933135ddb6ebcb6d9f31c8", + "language": "MATLAB", + "lines": 207, + "truncated": false, + "block": 1, + "row": 3976 + }, + { + "path": "single_particle_tracking/spt_compute_mean_velocity_correlation.m", + "sha256": "23c1e85db45a23243de921374ca157e13136ca19613729d334e1dc04b5589a64", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 1, + "row": 2781 + }, + { + "path": "single_particle_tracking/spt_convert_tracks_to_image.m", + "sha256": "f5c223aea65a5850db92867d1868073a8615a50402394c28f321ef1b93284dde", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 1, + "row": 2992 + }, + { + "path": "single_particle_tracking/spt_filter_tracks.m", + "sha256": "8dda41552661f71463edee33829f11388451e68e4899c8bdde3ab584560d1326", + "language": "MATLAB", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2671 + }, + { + "path": "single_particle_tracking/spt_jump_length_histogram.m", + "sha256": "e0b467f6c9342be28b200cc651b3ed8205859d7fe3a00779de565d29546a362a", + "language": "MATLAB", + "lines": 140, + "truncated": false, + "block": 1, + "row": 3770 + }, + { + "path": "single_particle_tracking/spt_layover_module_colocalization.m", + "sha256": "1542dd948790988111127a8a9aedbde2aa9b843e6fd1d845bbb4e6a14e905d4c", + "language": "MATLAB", + "lines": 453, + "truncated": false, + "block": 1, + "row": 4236 + }, + { + "path": "single_particle_tracking/spt_layover_module_max_distance.m", + "sha256": "92262effab054877fd8f02c9a9562278f5419cb9e32f55b08eb6abd69447e5ac", + "language": "MATLAB", + "lines": 390, + "truncated": false, + "block": 1, + "row": 4190 + }, + { + "path": "single_particle_tracking/spt_linear_fit.m", + "sha256": "97ba8395d3a9ff888e50d6f14deb7b934c8969098937f76791d317afd9e17f2a", + "language": "MATLAB", + "lines": 176, + "truncated": false, + "block": 1, + "row": 3877 + }, + { + "path": "single_particle_tracking/spt_log_log_plot.m", + "sha256": "119e8760f759ed7ee8587fa12cf9403d29bdd48df2a71a7244ecb6993362bfbe", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 1, + "row": 2682 + }, + { + "path": "single_particle_tracking/spt_motion_classification.m", + "sha256": "fd06b3c944f73ed0194cc5da50bd52f732f653db9af46b5da74cfd92e0553f8e", + "language": "MATLAB", + "lines": 92, + "truncated": false, + "block": 1, + "row": 3521 + }, + { + "path": "single_particle_tracking/spt_motion_classification__distance_callback.m", + "sha256": "afe5490f23eb390c46e354f6e42a497903ae0da0993ddb179b88a6f4a6fec6e8", + "language": "MATLAB", + "lines": 47, + "truncated": false, + "block": 1, + "row": 3156 + }, + { + "path": "single_particle_tracking/spt_motion_classification_butterfly.m", + "sha256": "67d526e87037b05f65a4197457d2cbfcf3faa3ab9aa0da374df978ab7f418dc3", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 1, + "row": 3241 + }, + { + "path": "single_particle_tracking/spt_parabolic_fit.m", + "sha256": "aabebf4dbd05f78f7b9000460bd50956b88cf9eb1c0143e2cfdcc6187ada7c2e", + "language": "MATLAB", + "lines": 228, + "truncated": false, + "block": 1, + "row": 4013 + }, + { + "path": "single_particle_tracking/spt_particles_velocity.m", + "sha256": "d788000132dbbef7aeb087a8f92e02f4e3b5328ca2678fc6202f92dc180c2b68", + "language": "MATLAB", + "lines": 99, + "truncated": false, + "block": 1, + "row": 3512 + }, + { + "path": "single_particle_tracking/spt_particles_velocity_correlation.m", + "sha256": "307626c6f288c5eb7457d1a25cc2057c031e2e6c7d36ac9422cb888b4e59bc34", + "language": "MATLAB", + "lines": 101, + "truncated": false, + "block": 1, + "row": 3522 + }, + { + "path": "single_particle_tracking/spt_plot.m", + "sha256": "f3a6beb38a834175a86fcd5d9e1a08df84c7a33ff42b41b989d586ec63b9b810", + "language": "MATLAB", + "lines": 239, + "truncated": false, + "block": 1, + "row": 4061 + }, + { + "path": "single_particle_tracking/spt_plot_all_tracks.m", + "sha256": "cfca1d8e0cc2c3f5a5335fb65993abb6d68917e37a2fbb11f003faf4cc6e39c0", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 1, + "row": 3148 + }, + { + "path": "single_particle_tracking/spt_send_data_to_workspace.m", + "sha256": "4f5da556e325b6baa290d885dd68eb881e382eeebbcf7ab3f28b0a8edc8bb858", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 1, + "row": 2403 + }, + { + "path": "single_particle_tracking/spt_tracks_change_tracks_time.m", + "sha256": "2ef5f707aa3a436c824916860bc04c6c85f1ff885bbc1500b89eb532f632404a", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 1, + "row": 2520 + }, + { + "path": "single_particle_tracking/spt_tracks_convert_tracks_to_image.m", + "sha256": "9db716ab5149bd1c2c2ea3dbaed0d86525a37665e84cf7487068d7e66a7aba71", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 1, + "row": 2732 + }, + { + "path": "single_particle_tracking/spt_tracks_displacement_histogram.m", + "sha256": "22ace83fbeee30127564acd02edfa9024d63ea83b869acc501f662864533e281", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 1, + "row": 3335 + }, + { + "path": "single_particle_tracking/spt_tracks_displacement_histogram_plot.m", + "sha256": "0dcbd1dc3eeb1a576edfabd97a8e8ab903cf10a4efc3109d1115387882a6c7b8", + "language": "MATLAB", + "lines": 102, + "truncated": false, + "block": 1, + "row": 3823 + }, + { + "path": "single_particle_tracking/spt_tracks_displacement_model_plot.m", + "sha256": "b76a8ae354523b4b5b7baaf9a0880fdb7b11126a0345581af33e22eb4ba807ac", + "language": "MATLAB", + "lines": 85, + "truncated": false, + "block": 1, + "row": 3669 + }, + { + "path": "single_particle_tracking/spt_tracks_filter_tracks_time_zero.m", + "sha256": "e5258e43a0b64293274f4fc6093fb2facc6cd621c7a5e01247f652ca27e71380", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 1, + "row": 2478 + }, + { + "path": "single_particle_tracking/spt_tracks_last_first_distance_traveled_callback.m", + "sha256": "24d60bdc92b63536bbd4b9bd5c1645871d19e3d11619c545ef5f37cf163bcf92", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 1, + "row": 3297 + }, + { + "path": "single_particle_tracking/spt_tracks_maximum_distance_traveled_callback.m", + "sha256": "83a110dcb33afc8a59979bcbe0a0e8f96f3672d9c22781c371d172511aa60367", + "language": "MATLAB", + "lines": 68, + "truncated": false, + "block": 1, + "row": 3311 + }, + { + "path": "single_particle_tracking/spt_tracks_number_of_frames_histogram.m", + "sha256": "4a710b4d99f5dcef442df131aecae0392a8482cc0345381f6c32cd6e55ed2201", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 1, + "row": 3278 + }, + { + "path": "single_particle_tracking/spt_tracks_total_distance_traveled_callback.m", + "sha256": "782fee9101d228516de52a6fbd72eb546b5856f8457443d7f71e5001314b65e6", + "language": "MATLAB", + "lines": 72, + "truncated": false, + "block": 1, + "row": 3326 + }, + { + "path": "single_particle_tracking/spt_video_plot.m", + "sha256": "17aa3c7f6de1fdc0ddd6771fc7ecf10ea3b51de3b952cf0074f6a8e82a7cddd5", + "language": "MATLAB", + "lines": 107, + "truncated": false, + "block": 1, + "row": 3501 + }, + { + "path": "voronoi_areas_python.py", + "sha256": "663da1028ca55a746d68e3291ca95637ef614dbadb2974795bbba3b2489e6a42", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 1, + "row": 5773 + }, + { + "path": "voronoi_clustering.py", + "sha256": "8e93309042ff66fac208182db4539095cfd8a4b97990d5caf5e431846957ea5f", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 1, + "row": 7996 + } + ] +} \ No newline at end of file diff --git a/manifests/4c/github.com__nchahare__spatchcocking.json b/manifests/4c/github.com__nchahare__spatchcocking.json new file mode 100644 index 0000000000000000000000000000000000000000..b7f58bb3df1019e98f08a441e1b95f6b59f3a12c --- /dev/null +++ b/manifests/4c/github.com__nchahare__spatchcocking.json @@ -0,0 +1,219 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/nchahare/spatchcocking", + "url": "https://github.com/nchahare/spatchcocking", + "host": "github.com", + "commit": "3306f17988f70473ab3b944a391e26828f64a028", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "566fb1904ea6afc662dae1f6c9861c87d77f60ee85b3f6c139fd2b3b797c2adf", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1141 + }, + { + "path": "finite_element/fem_plane_stress.py", + "sha256": "eae8e0f90738c872d05d3e9dc7c295b9aeab4bd6226e9b546ec225cc86e84dfa", + "language": "Python", + "lines": 504, + "truncated": false, + "block": 2, + "row": 2177 + }, + { + "path": "finite_element/notebook-fem.ipynb", + "sha256": "eae8e0f90738c872d05d3e9dc7c295b9aeab4bd6226e9b546ec225cc86e84dfa", + "language": "Jupyter", + "lines": 504, + "truncated": false, + "block": 2, + "row": 2177 + }, + { + "path": "hooks.py", + "sha256": "b251603f964fc9478b2ae80fb00c6d67439dd9d2b3dcc1206e0ce1411a34c0fa", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 2, + "row": 1686 + }, + { + "path": "notebooks/00_mesh_viewer.ipynb", + "sha256": "99d161290615cf18cefc0b8d896bba39d893acf88dd4f90262dae46f98995175", + "language": "Jupyter", + "lines": 136, + "truncated": false, + "block": 2, + "row": 1036 + }, + { + "path": "notebooks/00_mesh_viewer.py", + "sha256": "1146b467a807013c39a14d0be62e7b0c835ce1717dc35d2fa3bc220d17ba6056", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 2, + "row": 1817 + }, + { + "path": "notebooks/01_mesh_generation.ipynb", + "sha256": "a2ebd533a68b6b2e9d8b98f9ce8ed54fe79843d0235b5b8142293adc916ff2a4", + "language": "Jupyter", + "lines": 184, + "truncated": false, + "block": 2, + "row": 1041 + }, + { + "path": "notebooks/01_mesh_generation.py", + "sha256": "7af7e794e6e7a25c8025b8a18a84d8bf7940f0b8a868796564f8790e4e131b54", + "language": "Python", + "lines": 176, + "truncated": false, + "block": 2, + "row": 1929 + }, + { + "path": "notebooks/02_curvature_mapping.ipynb", + "sha256": "a3271c907372a854dbc54140196d86b2546aaf02d3136b2023194cc4c656193d", + "language": "Jupyter", + "lines": 162, + "truncated": false, + "block": 2, + "row": 1040 + }, + { + "path": "notebooks/02_curvature_mapping.py", + "sha256": "ff49beb2ed9ff8d80970b3c49e62e2d53f34d29a2246a4d77b75fe33a466eb74", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 2, + "row": 1946 + }, + { + "path": "notebooks/03_thickness_mapping.ipynb", + "sha256": "72778506182ddee8f833a8754976533b59a7e9f61916182e426013f3cd650902", + "language": "Jupyter", + "lines": 99, + "truncated": false, + "block": 2, + "row": 1012 + }, + { + "path": "notebooks/03_thickness_mapping.py", + "sha256": "f2c7676ec705c54b99e36ebaa1f50671d10b7f73e3308592f7223cd605e95382", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 2, + "row": 1806 + }, + { + "path": "notebooks/04_pHH3_density_mapping.ipynb", + "sha256": "cfb23b30cec3b3845118cd5832a1d6317e76eba597f4e14f18154657ec6e3e9c", + "language": "Jupyter", + "lines": 118, + "truncated": false, + "block": 2, + "row": 1026 + }, + { + "path": "notebooks/04_pHH3_density_mapping.py", + "sha256": "00c888080c72a46009cb7d9837e714da18b1172c91d47077f7b31aaf0a53d828", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 2, + "row": 1877 + }, + { + "path": "notebooks/05_spatchcocking.ipynb", + "sha256": "5ce19cc31464bf6076d193454587174418d78fbb4830d675bf26b6cfe9d9275d", + "language": "Jupyter", + "lines": 263, + "truncated": false, + "block": 2, + "row": 1071 + }, + { + "path": "notebooks/05_spatchcocking.py", + "sha256": "88de069040537b838ca346dd475fed9e6def07627dc92ebe08c01f233c962d08", + "language": "Python", + "lines": 263, + "truncated": false, + "block": 2, + "row": 2060 + }, + { + "path": "notebooks/06_figure_plots.ipynb", + "sha256": "35845dbed95c93a3df79ef4a7e3368257d754c4b259a22540f8d269d746490b7", + "language": "Jupyter", + "lines": 1989, + "truncated": false, + "block": 2, + "row": 1117 + }, + { + "path": "notebooks/06_figure_plots.py", + "sha256": "c5020dfe7ae5ec6d424fc1f7ef666458f5eb3604be0e10ad399b9ea7babac175", + "language": "Python", + "lines": 1995, + "truncated": false, + "block": 2, + "row": 2246 + }, + { + "path": "readme.md", + "sha256": "fdc58fbaac38883ce7ae0a1a97f5003bcb0a2c59adba35584e2f64b91dc71f66", + "language": "Text", + "lines": 169, + "truncated": false, + "block": 2, + "row": 2646 + }, + { + "path": "setup.py", + "sha256": "9263a4f7bda86ee3dcc10c9129f2c42b9deecdbfab7efda20eee037b44896965", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 2, + "row": 1704 + }, + { + "path": "src/spatchcocking/__init__.py", + "sha256": "d736d7851380dae5fcafb86dc79da805fa16cd3f658ed56c2cf9cd1efaefb509", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 2, + "row": 1613 + }, + { + "path": "src/spatchcocking/sectioning_utils.py", + "sha256": "2830e8f462d8aceea3bef78827439e155ccc699bd85604ef2b3a9929c19b4ed7", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 2, + "row": 1643 + }, + { + "path": "src/spatchcocking/spatchcocking_utils.py", + "sha256": "a7d756704f58b82eb2b7273a4eeb3ed632b8a0c029714f59d9d2141a3a28b9aa", + "language": "Python", + "lines": 1664, + "truncated": false, + "block": 2, + "row": 2239 + } + ] +} \ No newline at end of file diff --git a/manifests/4c/github.com__spin-test__spin-test.json b/manifests/4c/github.com__spin-test__spin-test.json new file mode 100644 index 0000000000000000000000000000000000000000..f49004274803fa70d9234730f924c7904bd97981 --- /dev/null +++ b/manifests/4c/github.com__spin-test__spin-test.json @@ -0,0 +1,804 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/spin-test/spin-test", + "url": "https://github.com/spin-test/spin-test", + "host": "github.com", + "commit": "d149e273f2dcfb3d1d3e86c4ec7293dd9e38e265", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "a06ff701f9d4d9a8961d07efe9aae4224e979585c958b3c552bd2d1d71220cfe", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2162 + }, + { + "path": "README.md", + "sha256": "e29bd801880bf5f19af36dc27377c56620702f8da38b31d6ca2ec32c4ef3905f", + "language": "Text", + "lines": 53, + "truncated": false, + "block": 1, + "row": 11871 + }, + { + "path": "scripts/DemonSpinFS.m", + "sha256": "739885c2ece065222469201e076eca710015d878264d60ab1d695cf4b4d43a7e", + "language": "MATLAB", + "lines": 97, + "truncated": false, + "block": 1, + "row": 3450 + }, + { + "path": "scripts/SpinPermuCIVET.m", + "sha256": "a6ba123a57a1b42e403ed43f48420c5e136b8805633c5db0226c40f7a1fd5708", + "language": "MATLAB", + "lines": 79, + "truncated": false, + "block": 1, + "row": 3398 + }, + { + "path": "scripts/SpinPermuFS.m", + "sha256": "3112d488162af930ab6c0b737c5324bbe2d37fdd4a264f556cb47131ab51b7bd", + "language": "MATLAB", + "lines": 111, + "truncated": false, + "block": 1, + "row": 3654 + }, + { + "path": "scripts/SurfStat/@random/char.m", + "sha256": "1eaa289f069b6cf18cc440f8e707c459afa67a73970184eacaef0542aa012b4f", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 1, + "row": 2250 + }, + { + "path": "scripts/SurfStat/@random/display.m", + "sha256": "73785d2f35c823cc28da02a4314927a9233fb3da2b7f7c97965c39d3ca3c9cd5", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 1, + "row": 2484 + }, + { + "path": "scripts/SurfStat/@random/double.m", + "sha256": "2ac545959a32dd6156bb41cad9020acf77f91d4a70e376fb930adb0fb57157fd", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 1, + "row": 2252 + }, + { + "path": "scripts/SurfStat/@random/image.m", + "sha256": "ef356cdaf14a3259e2101751d089846fa56b43bc4b226e67cf63b992b8a06d09", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 1, + "row": 2838 + }, + { + "path": "scripts/SurfStat/@random/isempty.m", + "sha256": "0e2c0586603e56a703e673c225e578924183fc6e984e53a085e66240aeba831e", + "language": "MATLAB", + "lines": 2, + "truncated": false, + "block": 1, + "row": 2257 + }, + { + "path": "scripts/SurfStat/@random/minus.m", + "sha256": "482fbec021a59dc039660bb863caef38901040bc08e478885b0de527edaaefe9", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 1, + "row": 2594 + }, + { + "path": "scripts/SurfStat/@random/mpower.m", + "sha256": "555ccf8860a777e08dcb4354bce395ffbdddec24228207787b1b1074947a189e", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 1, + "row": 2264 + }, + { + "path": "scripts/SurfStat/@random/mtimes.m", + "sha256": "52ce0ece26133cbcde1a39643025a49383530931c817ab018eb5e8d50c7ad62d", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 1, + "row": 3077 + }, + { + "path": "scripts/SurfStat/@random/plus.m", + "sha256": "28e549bed879db0620061231b4832dc3eef4cef8d751923f5286f04b0b879d26", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 1, + "row": 2592 + }, + { + "path": "scripts/SurfStat/@random/random.m", + "sha256": "8605c0143b01702eeda5ed470bcfd070b22a691d9eb312580cc105f2c285ab85", + "language": "MATLAB", + "lines": 136, + "truncated": false, + "block": 1, + "row": 3748 + }, + { + "path": "scripts/SurfStat/@random/size.m", + "sha256": "613805af21c98b6d912823353770a1cff772b9c0df8fb8d093c90ebebbb3c469", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 1, + "row": 2271 + }, + { + "path": "scripts/SurfStat/@random/subsref.m", + "sha256": "1650f5e5d7d1dd779316bdb9beddf3e832ad761392713e8097022e521d82c1d8", + "language": "MATLAB", + "lines": 2, + "truncated": false, + "block": 1, + "row": 2245 + }, + { + "path": "scripts/SurfStat/@term/char.m", + "sha256": "b5c869526a82e00af6a200026046110987c74ccb2f909724d3fe28cc97ae5218", + "language": "MATLAB", + "lines": 2, + "truncated": false, + "block": 1, + "row": 2242 + }, + { + "path": "scripts/SurfStat/@term/display.m", + "sha256": "a63a38134ac9a23481ae49df6cded35bfeb0cc06dd1a91d52aa57014de08b48b", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 1, + "row": 2397 + }, + { + "path": "scripts/SurfStat/@term/double.m", + "sha256": "b7cef5e215f70eb84efe463cb2086b4c6d23283e675bc4ee6c6da8383c628d1b", + "language": "MATLAB", + "lines": 2, + "truncated": false, + "block": 1, + "row": 2243 + }, + { + "path": "scripts/SurfStat/@term/image.m", + "sha256": "0b3667e62f20723d9b98865e3312458f4d48471e89ae43fc5c8da175438466d2", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 1, + "row": 2547 + }, + { + "path": "scripts/SurfStat/@term/isempty.m", + "sha256": "346568e40d481d7c297cea8b6b22d6bcec6df0fd582a8eff466099838bf8e239", + "language": "MATLAB", + "lines": 2, + "truncated": false, + "block": 1, + "row": 2244 + }, + { + "path": "scripts/SurfStat/@term/minus.m", + "sha256": "8163ab9b072da16bc32e23a7ee4e37208113199aeb3822f08b9bb9eaa32e05c0", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 1, + "row": 2604 + }, + { + "path": "scripts/SurfStat/@term/mpower.m", + "sha256": "ae455ad3570dd970e564c1e266fb663a2421a923229081d40097230a3fa6a366", + "language": "MATLAB", + "lines": 8, + "truncated": false, + "block": 1, + "row": 2283 + }, + { + "path": "scripts/SurfStat/@term/mtimes.m", + "sha256": "6d95108a965323c421a39f4eb4475c77c7f81f4b1bc75b7ae9c52928a72bcfe0", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 1, + "row": 2850 + }, + { + "path": "scripts/SurfStat/@term/plus.m", + "sha256": "bb133143d55676692677d063e24b26ef66fd1f146f0f820c1a650507f5d86ce0", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 1, + "row": 2684 + }, + { + "path": "scripts/SurfStat/@term/size.m", + "sha256": "34b4b1c55974f6d828f1933e0cc3d787e91f84c88724fc2e0aa8049a37a70e17", + "language": "MATLAB", + "lines": 6, + "truncated": false, + "block": 1, + "row": 2272 + }, + { + "path": "scripts/SurfStat/@term/subsref.m", + "sha256": "0a5e0455e6fe7d78913f6e5cf313414ebd61921991da9d745838364b35ccd631", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 1, + "row": 2316 + }, + { + "path": "scripts/SurfStat/@term/term.m", + "sha256": "445f22f713737ff97ccebd262c406fd3791c5b0f704f16dfc8295b07f50131ea", + "language": "MATLAB", + "lines": 109, + "truncated": false, + "block": 1, + "row": 3489 + }, + { + "path": "scripts/SurfStat/I.m", + "sha256": "d30abc7a48de55c591cd0ea333192768d16e01d72f581252d824b9926dbbea62", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 1, + "row": 2276 + }, + { + "path": "scripts/SurfStat/SurfStatAvSurf.m", + "sha256": "04fa9beea26ee806aa0b6f1b4939c0cdd1df8103edd9891344ca08d746b43fd3", + "language": "MATLAB", + "lines": 44, + "truncated": false, + "block": 1, + "row": 2910 + }, + { + "path": "scripts/SurfStat/SurfStatAvVol.m", + "sha256": "64be56389891ecd151f5e6ee91ab641827a2bf49fab1fb49d0a4c112fbd6679f", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 1, + "row": 3013 + }, + { + "path": "scripts/SurfStat/SurfStatColLim.m", + "sha256": "a257ec8c66017e79ae9b6276b9cdce8c5a7af5a7871226b43e889316bf78056b", + "language": "MATLAB", + "lines": 36, + "truncated": false, + "block": 1, + "row": 2636 + }, + { + "path": "scripts/SurfStat/SurfStatColormap.m", + "sha256": "3465ede4158f25365f436f89367372eed13005fb3946e6c0d64c1bbb5b846b9b", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 1, + "row": 2540 + }, + { + "path": "scripts/SurfStat/SurfStatCoord2Ind.m", + "sha256": "b6b1bbcb0945e1980bb53e0259964333d5eca9ace50ac1246f2e30b991a7b714", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 1, + "row": 2962 + }, + { + "path": "scripts/SurfStat/SurfStatDataCursor.m", + "sha256": "ad2c3284c7f9694b2f274313498e854a119e50180636e57b155eb5fa1bc6762d", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 1, + "row": 2507 + }, + { + "path": "scripts/SurfStat/SurfStatDataCursorP.m", + "sha256": "2a70163ec9776fc53589ce71333f25a16b934c3475eb45aa1b64e5f313816980", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 1, + "row": 2602 + }, + { + "path": "scripts/SurfStat/SurfStatDataCursorQ.m", + "sha256": "d7ca798cab67088e770033c1c3e75a1bd9180298d78ee7682eb33de0312bd77c", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 1, + "row": 2577 + }, + { + "path": "scripts/SurfStat/SurfStatDelete.m", + "sha256": "9f68b2e3376861a7abd3f7f46474da26e7f4179e2d773fc79c2b5c310d500093", + "language": "MATLAB", + "lines": 70, + "truncated": false, + "block": 1, + "row": 3161 + }, + { + "path": "scripts/SurfStat/SurfStatEdg.m", + "sha256": "c0034c841bf5f103f1c381a442965b4a69791cc18bc538bab4d8267e85d01b24", + "language": "MATLAB", + "lines": 78, + "truncated": false, + "block": 1, + "row": 3207 + }, + { + "path": "scripts/SurfStat/SurfStatF.m", + "sha256": "bc69b6fbc60e90a9caf369972e6ef0a70f1e165670e1bd5644cf09000ae979ac", + "language": "MATLAB", + "lines": 128, + "truncated": false, + "block": 1, + "row": 3520 + }, + { + "path": "scripts/SurfStat/SurfStatInd2Coord.m", + "sha256": "02efb77fd8d74e67bf29e16171c83abf5cbd96e594b42199c280822146a327d8", + "language": "MATLAB", + "lines": 39, + "truncated": false, + "block": 1, + "row": 2816 + }, + { + "path": "scripts/SurfStat/SurfStatInflate.m", + "sha256": "7cbb3a3dc4fd3e71ebb4be07add9a276cac32a9ef8760fad10283b98ffd41dfb", + "language": "MATLAB", + "lines": 74, + "truncated": false, + "block": 1, + "row": 3260 + }, + { + "path": "scripts/SurfStat/SurfStatLinMod.m", + "sha256": "20bbc89e361d601437e952523624f814773fcf6daca9ad94bff095f3ccc69ec5", + "language": "MATLAB", + "lines": 346, + "truncated": false, + "block": 1, + "row": 4034 + }, + { + "path": "scripts/SurfStat/SurfStatListDir.m", + "sha256": "56003bba4a477b2a115c0538d6e84fd03ff2a29c5f00ba6a79abe5768f4d2992", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 1, + "row": 2740 + }, + { + "path": "scripts/SurfStat/SurfStatMaskCut.m", + "sha256": "3ac588a4b0248ad3705d2dc719fabc2e92c9597b7247fb345296d012f453426e", + "language": "MATLAB", + "lines": 23, + "truncated": false, + "block": 1, + "row": 2579 + }, + { + "path": "scripts/SurfStat/SurfStatNorm.m", + "sha256": "b9858ff48e04c87c2a20ee4fa6f666034444a1ca601fc971ded7be88209788d4", + "language": "MATLAB", + "lines": 82, + "truncated": false, + "block": 1, + "row": 3089 + }, + { + "path": "scripts/SurfStat/SurfStatP.m", + "sha256": "bf474108e0465a1a53ca8da14e48724bd5540ce167fe42dc6934a11cb9277036", + "language": "MATLAB", + "lines": 106, + "truncated": false, + "block": 1, + "row": 3504 + }, + { + "path": "scripts/SurfStat/SurfStatPCA.m", + "sha256": "5da752cfc1442adc060086172653730b00ca292ad9718a4d33dca22dfda43d54", + "language": "MATLAB", + "lines": 166, + "truncated": false, + "block": 1, + "row": 3533 + }, + { + "path": "scripts/SurfStat/SurfStatPeakClus.m", + "sha256": "cf77906e3fda39214ef344ecb01efd7d39475c45c1b3bf24b9865bd79fd489d4", + "language": "MATLAB", + "lines": 147, + "truncated": false, + "block": 1, + "row": 3558 + }, + { + "path": "scripts/SurfStat/SurfStatPlot.m", + "sha256": "9526a7a2787cc469f084cd7cc50bb4d8dfc1b6d2e72bae7eeb613bdef0d6db70", + "language": "MATLAB", + "lines": 141, + "truncated": false, + "block": 1, + "row": 3571 + }, + { + "path": "scripts/SurfStat/SurfStatQ.m", + "sha256": "d15c65a571ac5053e417a123af5c138f91df893df5c296a2006658cc74c11224", + "language": "MATLAB", + "lines": 66, + "truncated": false, + "block": 1, + "row": 3019 + }, + { + "path": "scripts/SurfStat/SurfStatROI.m", + "sha256": "11c5a0081e3af32fe4ebcf4536d7108321a931af1225f86ace6476ed02ff6c17", + "language": "MATLAB", + "lines": 44, + "truncated": false, + "block": 1, + "row": 2948 + }, + { + "path": "scripts/SurfStat/SurfStatReadData.m", + "sha256": "8480a4fcf39bc8f82bee478ab3b4db4454f1bbb86fa2eed5b18d4241dd7b4ce9", + "language": "MATLAB", + "lines": 113, + "truncated": false, + "block": 1, + "row": 3473 + }, + { + "path": "scripts/SurfStat/SurfStatReadData1.m", + "sha256": "cffc306e020ab12936f4a6c1aec32956c6980c961ba4d9c095f05b33806d38ed", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 1, + "row": 2994 + }, + { + "path": "scripts/SurfStat/SurfStatReadSurf.m", + "sha256": "290328b184ba4198f0bde8bc6502bb2480aa1c8ebfdde5225e416eedf1235b7a", + "language": "MATLAB", + "lines": 133, + "truncated": false, + "block": 1, + "row": 3569 + }, + { + "path": "scripts/SurfStat/SurfStatReadSurf1.m", + "sha256": "bd3ba9188ec83194fc7adad0a405a5293e7c70183b03780c0bd38431e6617cca", + "language": "MATLAB", + "lines": 164, + "truncated": false, + "block": 1, + "row": 3769 + }, + { + "path": "scripts/SurfStat/SurfStatReadVol.m", + "sha256": "34fe8876c76b95dfa13cee175dbd174e6f16c1b18893c9bc18a51550a437ad2c", + "language": "MATLAB", + "lines": 187, + "truncated": false, + "block": 1, + "row": 3754 + }, + { + "path": "scripts/SurfStat/SurfStatReadVol1.m", + "sha256": "d7d20b92a6f6e8b763ffebfc41c9ca498c4da054e85a9437eaa2670dd6e2b13f", + "language": "MATLAB", + "lines": 663, + "truncated": false, + "block": 1, + "row": 4199 + }, + { + "path": "scripts/SurfStat/SurfStatResels.m", + "sha256": "5b65a3ea23abd85dbbfd29fee9d8f2e77b367e527e0731f92559e04375751c1e", + "language": "MATLAB", + "lines": 440, + "truncated": false, + "block": 1, + "row": 4211 + }, + { + "path": "scripts/SurfStat/SurfStatSmooth.m", + "sha256": "ffa43119bf744e897d457576c879b27155f9edb4fba014289b77379ff2ebe528", + "language": "MATLAB", + "lines": 85, + "truncated": false, + "block": 1, + "row": 3171 + }, + { + "path": "scripts/SurfStat/SurfStatStand.m", + "sha256": "8e4b297520ef3e59ef646f7c169d6847000355cf3d6373d434c245e21932e391", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 1, + "row": 2699 + }, + { + "path": "scripts/SurfStat/SurfStatSurf2Vol.m", + "sha256": "821c6286bfe1c9ce6bfb00ef86537d195ec56280d187b655c27ab6b7d2d9243e", + "language": "MATLAB", + "lines": 85, + "truncated": false, + "block": 1, + "row": 3376 + }, + { + "path": "scripts/SurfStat/SurfStatT.m", + "sha256": "a384ba6041ee3867195d80d16d39aff8a22c2248898742aae92fe95a6c252d07", + "language": "MATLAB", + "lines": 160, + "truncated": false, + "block": 1, + "row": 3752 + }, + { + "path": "scripts/SurfStat/SurfStatView.m", + "sha256": "639cfe7bad96c9ce8463ca8dde2f09fd18b22c0a9d951eb1bdf5a4c22a3556b1", + "language": "MATLAB", + "lines": 111, + "truncated": false, + "block": 1, + "row": 3563 + }, + { + "path": "scripts/SurfStat/SurfStatView1.m", + "sha256": "0d5b6cade09eae58c0a0368c1b68a13ff11f4dea204c68a8b8d6a9583045993a", + "language": "MATLAB", + "lines": 309, + "truncated": false, + "block": 1, + "row": 4064 + }, + { + "path": "scripts/SurfStat/SurfStatViewData.m", + "sha256": "3f3a1162ec096202fa0c71916d962934d4b58721555f2a74509405e1584373a5", + "language": "MATLAB", + "lines": 157, + "truncated": false, + "block": 1, + "row": 3685 + }, + { + "path": "scripts/SurfStat/SurfStatViews.m", + "sha256": "15d14da1c21f4895b391964ead5ad607d2a05925d44dcc25cd35187cdd79b0e8", + "language": "MATLAB", + "lines": 91, + "truncated": false, + "block": 1, + "row": 3275 + }, + { + "path": "scripts/SurfStat/SurfStatVol2Surf.m", + "sha256": "4a4b81b37697f93d1df4526c267f04556ae04ded4b6b5c9382c913de95978ffa", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 1, + "row": 3107 + }, + { + "path": "scripts/SurfStat/SurfStatWriteData.m", + "sha256": "097b279efbf6aa302846f7b0c8ee5efcabbf3d37eb0145877240cefb166901eb", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 1, + "row": 2862 + }, + { + "path": "scripts/SurfStat/SurfStatWriteSurf.m", + "sha256": "63a56b5486a2d6c1bc69bfaa82b52f5abd2d58e1bfe07536d277385406c1d9da", + "language": "MATLAB", + "lines": 81, + "truncated": false, + "block": 1, + "row": 3211 + }, + { + "path": "scripts/SurfStat/SurfStatWriteSurf1.m", + "sha256": "10f83a2e289b3e8825f966cbcbdc71c4a592d86573aed5a52ef73873a44755ed", + "language": "MATLAB", + "lines": 96, + "truncated": false, + "block": 1, + "row": 3417 + }, + { + "path": "scripts/SurfStat/SurfStatWriteVol.m", + "sha256": "99d7cae6bdc142cac8374ecae217e89d79181b83468eb03141aa0871fb140905", + "language": "MATLAB", + "lines": 44, + "truncated": false, + "block": 1, + "row": 2881 + }, + { + "path": "scripts/SurfStat/SurfStatWriteVol1.m", + "sha256": "998b747537d748f8bb0f995ee4616125ccde4ab55544dff130ea6f419b1ec1d5", + "language": "MATLAB", + "lines": 756, + "truncated": false, + "block": 1, + "row": 4239 + }, + { + "path": "scripts/SurfStat/fac2var.m", + "sha256": "9ec2204a829c9cd50d16f4cf6ac3dd463af912dcc5e811e4bd72a7d5070b0665", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 1, + "row": 2486 + }, + { + "path": "scripts/SurfStat/gl.m", + "sha256": "f91159abad41b1db3e617efb011c6b5571cf32c4a247a1c5637ab6fd8e332ab5", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 1, + "row": 2990 + }, + { + "path": "scripts/SurfStat/redmod.m", + "sha256": "88030d13297f5eaa187619b79004169e17047387189a68f165a4f2056a1ba85e", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 1, + "row": 3119 + }, + { + "path": "scripts/SurfStat/sample.m", + "sha256": "f125c9427894a640b44f05e2769303bbbe07c77b79f9e74c91c32613cf6a1ce0", + "language": "MATLAB", + "lines": 200, + "truncated": false, + "block": 1, + "row": 3884 + }, + { + "path": "scripts/SurfStat/spectral.m", + "sha256": "3ca3c9612bc631228829131f5a3322eaf225640e11f21d204f8d4e6f02a86e66", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 1, + "row": 2766 + }, + { + "path": "scripts/SurfStat/stat_threshold.m", + "sha256": "82dc8789d0a2bd5b0564f794e23a9434b7b89ee63cb057b07dbb9e15f9cfb469", + "language": "MATLAB", + "lines": 769, + "truncated": false, + "block": 1, + "row": 4288 + }, + { + "path": "scripts/SurfStat/var2fac.m", + "sha256": "d005d1f2f2d53ce00282d65176e92d7d61c678285e201e0d91853ddc9a4b8ea4", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 1, + "row": 2686 + }, + { + "path": "scripts/nearestneighbour.m", + "sha256": "57d0bbd9b384149e5065e3959f8e680ea56e04cbd55288e4d089763b9d92be15", + "language": "MATLAB", + "lines": 380, + "truncated": false, + "block": 1, + "row": 4148 + }, + { + "path": "scripts/nearestneighbour/demo/nndemo.m", + "sha256": "7f4bd284f0d761d52871555a17e0b843818ecf80a6323b4799d6a4b05b1dd10e", + "language": "MATLAB", + "lines": 176, + "truncated": false, + "block": 1, + "row": 3745 + }, + { + "path": "scripts/nearestneighbour/demo/timingtest.m", + "sha256": "2ea3e68d99a6916423d459c9515d9adbbdcc6c4e3de26b87f1d64bb9cfaff87d", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 1, + "row": 2673 + }, + { + "path": "scripts/nearestneighbour/nearestneighbour.m", + "sha256": "57d0bbd9b384149e5065e3959f8e680ea56e04cbd55288e4d089763b9d92be15", + "language": "MATLAB", + "lines": 380, + "truncated": false, + "block": 1, + "row": 4148 + }, + { + "path": "scripts/plotFSsurf.m", + "sha256": "ab7f302e1600739c178a3d215c77031229d2ff44f440a79d718088747dc4709e", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 1, + "row": 2692 + }, + { + "path": "scripts/pvalvsNull.m", + "sha256": "65b10e0eaaf8957b64370f2b8ef8b0412ea47cb02a965c9d7292529596228bc0", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 1, + "row": 3280 + }, + { + "path": "scripts/run_spintest.m", + "sha256": "1a9d8c061f3a1f49f74949a9072428a78148b64c0ae6ec80d6357111bb9cf122", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 1, + "row": 2886 + } + ] +} \ No newline at end of file diff --git a/manifests/4d/zenodo__21365720.json b/manifests/4d/zenodo__21365720.json new file mode 100644 index 0000000000000000000000000000000000000000..6adadc1f0d6e32d9acd2a26340162e3f10003b59 --- /dev/null +++ b/manifests/4d/zenodo__21365720.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:21365720", + "url": "10.5281/zenodo.21365720", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "STDRICENEW.py", + "sha256": "837efc5b1dfb034c7eb29fc5d806911da100875ce9423817995874a1623e2b8b", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 1, + "row": 7706 + }, + { + "path": "新新的评估代码.py", + "sha256": "d53584e63fe3c883314f82547380f1df7234239b06dbd0249d9518ec2465c362", + "language": "Python", + "lines": 1168, + "truncated": false, + "block": 1, + "row": 9481 + } + ] +} \ No newline at end of file diff --git a/manifests/4e/github.com__algbio__spl-isoquant.json b/manifests/4e/github.com__algbio__spl-isoquant.json new file mode 100644 index 0000000000000000000000000000000000000000..536df3264c29e82648c12740daf3a2d7bb7bc9e4 --- /dev/null +++ b/manifests/4e/github.com__algbio__spl-isoquant.json @@ -0,0 +1,1578 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/algbio/spl-isoquant", + "url": "https://github.com/algbio/spl-IsoQuant", + "host": "github.com", + "commit": "4fcbd0dff9e0ac068af308b6a99e296a2b5d34a7", + "license": "GPL-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "2f4aa907148f4246d6b5ee192eca7d271bcf89adc5c2ba5c50442f5f3c09bb42", + "language": "License", + "lines": 60, + "truncated": false, + "block": 1, + "row": 2206 + }, + { + "path": "README.md", + "sha256": "e8ed60134fb9cf9ece9c87bba9c4a296f18907372a0e9e21f62206e0702b2cfd", + "language": "Text", + "lines": 170, + "truncated": false, + "block": 1, + "row": 11955 + }, + { + "path": "docs/getversion.py", + "sha256": "8832aae254306dc016329bf0a16a8eb04d185432904cb5bc6c7276adab294529", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 1, + "row": 5289 + }, + { + "path": "isoquant_lib/__init__.py", + "sha256": "f49b6fa9a44d07de6e1deeb33e5fe2fc0dea3ca4ce90775a88672d2116b0a1a3", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 1, + "row": 5192 + }, + { + "path": "isoquant_lib/alignment/__init__.py", + "sha256": "6417b16b3b9e8a63e3c427334248afd5dbb9a67b2a960dd402303ebc29d87dc5", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 1, + "row": 5223 + }, + { + "path": "isoquant_lib/alignment/alignment_info.py", + "sha256": "bb147d1a16e9dadf17c6972c4f491e51dfb281fbb67f0b867b3fd4660d8e81e8", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 1, + "row": 8006 + }, + { + "path": "isoquant_lib/alignment/alignment_processor.py", + "sha256": "ed0f74a22e99f13576b7619c5024cebcbc38d361068423eddd0aee7b49bad57d", + "language": "Python", + "lines": 661, + "truncated": false, + "block": 1, + "row": 9643 + }, + { + "path": "isoquant_lib/assignment/__init__.py", + "sha256": "0343393dfa2137248c8cef8f5cb28d671d2ca89d48adc29c59e753ee07aa2a9c", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 1, + "row": 5350 + }, + { + "path": "isoquant_lib/assignment/assignment_aggregator.py", + "sha256": "c269edee27e7df3f03b932c267f3e6f851741812dc69fab3e614171a5823a972", + "language": "Python", + "lines": 310, + "truncated": false, + "block": 1, + "row": 9222 + }, + { + "path": "isoquant_lib/assignment/assignment_io.py", + "sha256": "965fae6b56725e2c1d05b7fe9ca76ec023482a89b6849a693a4ea709767f0082", + "language": "Python", + "lines": 747, + "truncated": false, + "block": 1, + "row": 9691 + }, + { + "path": "isoquant_lib/assignment/assignment_loader.py", + "sha256": "330c036962941e61ab6d9f93409c5c0167141428ce4e93210cc58dad69f680ae", + "language": "Python", + "lines": 244, + "truncated": false, + "block": 1, + "row": 8544 + }, + { + "path": "isoquant_lib/assignment/exon_corrector.py", + "sha256": "757f746e23839004b227536818170a71bd78de9ac4a9cce8d9b4de0ae19b4634", + "language": "Python", + "lines": 213, + "truncated": false, + "block": 1, + "row": 8729 + }, + { + "path": "isoquant_lib/assignment/illumina_exon_corrector.py", + "sha256": "d64287a2c6a9284c13ad50be8a56294f36f66413eaed56163d7702f84682ac6e", + "language": "Python", + "lines": 168, + "truncated": false, + "block": 1, + "row": 8022 + }, + { + "path": "isoquant_lib/assignment/isoform_assignment.py", + "sha256": "5433a22d9e07da4bb73687ff25b6a08fa4375e3262e42261e3ee1624f319ff60", + "language": "Python", + "lines": 1114, + "truncated": false, + "block": 1, + "row": 9782 + }, + { + "path": "isoquant_lib/assignment/junction_comparator.py", + "sha256": "3b72e58ee7432e12ee406cb34e570547b340ae51750521a41a5fbe9e2fc64a99", + "language": "Python", + "lines": 472, + "truncated": false, + "block": 1, + "row": 9533 + }, + { + "path": "isoquant_lib/assignment/long_read_assigner.py", + "sha256": "f4f0e518fa3c6cdc7472dee0d3b49a72c1ecc110c436f28974e329a1b4793412", + "language": "Python", + "lines": 830, + "truncated": false, + "block": 1, + "row": 9752 + }, + { + "path": "isoquant_lib/assignment/long_read_profiles.py", + "sha256": "f60061396488cb6bf08ab8737edbd9904b9c99afd4d2a153c70f053c5f043c27", + "language": "Python", + "lines": 281, + "truncated": false, + "block": 1, + "row": 8905 + }, + { + "path": "isoquant_lib/assignment/multimap_resolver.py", + "sha256": "a8271bb8c6dc4e88ba5a9f42aca59d0f6a55293710cfbb67dc1d14ad3f7d7082", + "language": "Python", + "lines": 218, + "truncated": false, + "block": 1, + "row": 8455 + }, + { + "path": "isoquant_lib/assignment/read_groups.py", + "sha256": "6e131018e73c8981973d118781fba5c656f61b47a6569810c324d036940a3e6d", + "language": "Python", + "lines": 732, + "truncated": false, + "block": 1, + "row": 9583 + }, + { + "path": "isoquant_lib/barcode_calling/__init__.py", + "sha256": "98806bdefc9d1a19e9cd594fec18447f89967c51c8586095cb5e9814e048f135", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 1, + "row": 6882 + }, + { + "path": "isoquant_lib/barcode_calling/callers/__init__.py", + "sha256": "a664f2c124e8c2e7504a03d64a8d4519577a1e0ed1ce2eabd1eedb75fa0e53ff", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 1, + "row": 7030 + }, + { + "path": "isoquant_lib/barcode_calling/callers/base.py", + "sha256": "9be881a05354bf6f493e4dc3f1fa798ad61ecb9dde08f689884b7d2466332ad4", + "language": "Python", + "lines": 496, + "truncated": false, + "block": 1, + "row": 9240 + }, + { + "path": "isoquant_lib/barcode_calling/callers/curio.py", + "sha256": "c6bb48998493bb74db5bf68affa9bb039508c9576781b22a744bf7ad6a3676c5", + "language": "Python", + "lines": 330, + "truncated": false, + "block": 1, + "row": 9069 + }, + { + "path": "isoquant_lib/barcode_calling/callers/extraction_result.py", + "sha256": "5b39b1a375cff41a01fe66209dc4cdbfc3981bb37ab13a74f4f6c3e6bb806f03", + "language": "Python", + "lines": 333, + "truncated": false, + "block": 1, + "row": 8907 + }, + { + "path": "isoquant_lib/barcode_calling/callers/molecule_structure.py", + "sha256": "fb99ff79ad9c10fc84ce357d3c2d65d633088e7508966e37531b4ec1aca7e1dd", + "language": "Python", + "lines": 282, + "truncated": false, + "block": 1, + "row": 8819 + }, + { + "path": "isoquant_lib/barcode_calling/callers/protocol.py", + "sha256": "07f5d31f4ab857992a15d826de85ba650cbae4a09bb03cd0d3f4d6519e6ba6f2", + "language": "Python", + "lines": 191, + "truncated": false, + "block": 1, + "row": 7698 + }, + { + "path": "isoquant_lib/barcode_calling/callers/stereo.py", + "sha256": "7db2f9de1a6d7941a35f693f534fb4287c3959737c63ac6e0f232a0278330e63", + "language": "Python", + "lines": 574, + "truncated": false, + "block": 1, + "row": 9569 + }, + { + "path": "isoquant_lib/barcode_calling/callers/tenx.py", + "sha256": "67752f51d9701b75469e4e53dce22e96413b82f6469e2c404b585e3c6e717219", + "language": "Python", + "lines": 632, + "truncated": false, + "block": 1, + "row": 9619 + }, + { + "path": "isoquant_lib/barcode_calling/callers/universal_extraction.py", + "sha256": "c716039dc7f68902d28aa68300b91bea3c8928fe7f948c464ff5d70dbc6eb880", + "language": "Python", + "lines": 596, + "truncated": false, + "block": 1, + "row": 9645 + }, + { + "path": "isoquant_lib/barcode_calling/common.py", + "sha256": "3295bec325711418cb3059b759cad515e9b340c5284f1ebadeb7dc26204f1f99", + "language": "Python", + "lines": 459, + "truncated": false, + "block": 1, + "row": 9139 + }, + { + "path": "isoquant_lib/barcode_calling/detect_barcodes.py", + "sha256": "c1b9bd078f37ee885fb0fba9a11301c5f964d7e5afce3639b366fb5ca0396d76", + "language": "Python", + "lines": 483, + "truncated": false, + "block": 1, + "row": 9260 + }, + { + "path": "isoquant_lib/barcode_calling/indexers/__init__.py", + "sha256": "62c959c49b7b2b6ff1d17ca2e716138e07e5d8fcc22f35d8e9c364fd66b0c1ef", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 1, + "row": 5742 + }, + { + "path": "isoquant_lib/barcode_calling/indexers/base.py", + "sha256": "65ee851e5bec0fe1ece0523c6dc9446748922031c515cf0bc47c968e1b5bb634", + "language": "Python", + "lines": 253, + "truncated": false, + "block": 1, + "row": 8378 + }, + { + "path": "isoquant_lib/barcode_calling/indexers/shared_memory.py", + "sha256": "9ba1377f3cb7923abb2ec53570890be64cd44bcf2aacc4fedae6f4ac2bef6eed", + "language": "Python", + "lines": 332, + "truncated": false, + "block": 1, + "row": 8918 + }, + { + "path": "isoquant_lib/barcode_calling/indexers/two_bit.py", + "sha256": "d7be8733781b2248f3020a8b5b9941f3559ec7f53c34b0d6a78f0595a850ca10", + "language": "Python", + "lines": 221, + "truncated": false, + "block": 1, + "row": 8373 + }, + { + "path": "isoquant_lib/barcode_calling/umi_filtering.py", + "sha256": "e7e51fc063671971365122c01438afddb5f0d00f66db5d82e8a47f1705deafe8", + "language": "Python", + "lines": 628, + "truncated": false, + "block": 1, + "row": 9541 + }, + { + "path": "isoquant_lib/common.py", + "sha256": "2718bf80a00a18bb0f6b5c98ad728ccb36404f391498d1ebb65e42eec55621d2", + "language": "Python", + "lines": 951, + "truncated": false, + "block": 1, + "row": 9626 + }, + { + "path": "isoquant_lib/dataset_processor.py", + "sha256": "bc545322d9031f8f29c4dd7c5920a0168972adcde40071caf7beb10f614106c3", + "language": "Python", + "lines": 803, + "truncated": false, + "block": 1, + "row": 9727 + }, + { + "path": "isoquant_lib/fusion/fusion_detector.py", + "sha256": "77e6ad73e7f6a4499d455feaa488761831342fcd0507fa3ceb9acfd863303465", + "language": "Python", + "lines": 1249, + "truncated": false, + "block": 1, + "row": 9801 + }, + { + "path": "isoquant_lib/fusion/fusion_metadata.py", + "sha256": "a9d4d0aa5856efe2279d4dff4e9be91bf2bda4fb9da0e74eba81942b42299ba8", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 1, + "row": 7903 + }, + { + "path": "isoquant_lib/fusion/fusion_validator.py", + "sha256": "dfd8749e249cfa767f1df57f83ed954aba1fad7dc74375a1ebf297dcdf4e12f7", + "language": "Python", + "lines": 298, + "truncated": false, + "block": 1, + "row": 9110 + }, + { + "path": "isoquant_lib/fusion/genomic_interval_index.py", + "sha256": "5229422ee165158bc0c84dd8ab978f7c6d6bfe7f0fd6a6c6bb44813bb8c95ed7", + "language": "Python", + "lines": 150, + "truncated": false, + "block": 1, + "row": 7738 + }, + { + "path": "isoquant_lib/gene_info.py", + "sha256": "57d2e784875383041640fb7d47c71d16428c00dbcd4607ca43ae312c9e46d430", + "language": "Python", + "lines": 958, + "truncated": false, + "block": 1, + "row": 9728 + }, + { + "path": "isoquant_lib/gtf2db.py", + "sha256": "4b7c0206289de26c0a025f7c36d7933caf3c927a3f0489cbb521873bd1e0309a", + "language": "Python", + "lines": 420, + "truncated": false, + "block": 1, + "row": 9150 + }, + { + "path": "isoquant_lib/model_construction/__init__.py", + "sha256": "d6a2de7af44096f7ca5071af18ba9a2e564c7ad9d5a78ca750f416a0fa045048", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 1, + "row": 5354 + }, + { + "path": "isoquant_lib/model_construction/assignment_based_constructor.py", + "sha256": "a9bab24e2efc4fb8fece00f1c2c800a64d58e989a6b4aaa0e4e75ebd7db8f7a7", + "language": "Python", + "lines": 256, + "truncated": false, + "block": 1, + "row": 8991 + }, + { + "path": "isoquant_lib/model_construction/context.py", + "sha256": "34b00bde5d6935e23279aca712bf67ea42ace3069445db533f5b0e7762cf978e", + "language": "Python", + "lines": 223, + "truncated": false, + "block": 1, + "row": 8605 + }, + { + "path": "isoquant_lib/model_construction/end_processor.py", + "sha256": "b908b921035979be40fcf37050db3729372723054f712db128510a114377207f", + "language": "Python", + "lines": 394, + "truncated": false, + "block": 1, + "row": 9400 + }, + { + "path": "isoquant_lib/model_construction/fl_graph_constructor.py", + "sha256": "772326ac98a06eae506f6f267feff08fd6d271a4b178f2950852248ac3ddfadb", + "language": "Python", + "lines": 206, + "truncated": false, + "block": 1, + "row": 8808 + }, + { + "path": "isoquant_lib/model_construction/intron_graph.py", + "sha256": "debcadab1d5d6ce4f50a597f3b42fffc4852baa03e44edd6b7d26606f7c9792f", + "language": "Python", + "lines": 726, + "truncated": false, + "block": 1, + "row": 9658 + }, + { + "path": "isoquant_lib/model_construction/intron_path.py", + "sha256": "a68d6edb2f58706f910e72678c49aeab8f9af7bff38ec73a4a575771faa895ec", + "language": "Python", + "lines": 148, + "truncated": false, + "block": 1, + "row": 7925 + }, + { + "path": "isoquant_lib/model_construction/model_construction.py", + "sha256": "d5420feaa0a9d27db88f3bbebf52d3dc7645f8d2f7b88df0fffa241a2c3c47d2", + "language": "Python", + "lines": 197, + "truncated": false, + "block": 1, + "row": 8521 + }, + { + "path": "isoquant_lib/model_construction/model_filter.py", + "sha256": "2577440feffb5620299bc5a3c716cae6d340c56fd64bab44567961c5f0389a4d", + "language": "Python", + "lines": 232, + "truncated": false, + "block": 1, + "row": 8751 + }, + { + "path": "isoquant_lib/model_construction/model_read_counter.py", + "sha256": "89167232e9f99798f994522dfd0e80a933f76b07f57633bfbed0c7f35a81cc8e", + "language": "Python", + "lines": 181, + "truncated": false, + "block": 1, + "row": 8549 + }, + { + "path": "isoquant_lib/model_construction/read_assigner.py", + "sha256": "93106220e232bb20b9048be6512a3a0913a1ec781dad3e16e055cab4f6171d7f", + "language": "Python", + "lines": 154, + "truncated": false, + "block": 1, + "row": 8283 + }, + { + "path": "isoquant_lib/model_construction/transcript_printer.py", + "sha256": "27315eab366c84df0d0cfb7f828cd807c76c129908ebc8736eca9a794aabac52", + "language": "Python", + "lines": 149, + "truncated": false, + "block": 1, + "row": 8047 + }, + { + "path": "isoquant_lib/model_construction/transcript_splice_site_corrector.py", + "sha256": "fcb2c5e8d68f0f5169c8389d821768162fbc62f8da75c86ec597d40a37c4db17", + "language": "Python", + "lines": 237, + "truncated": false, + "block": 1, + "row": 8742 + }, + { + "path": "isoquant_lib/model_construction/transcript_to_gene_joiner.py", + "sha256": "ceb5cf65de7fc677348ba8f45f519e134c57cf7b4a7141e23314d20b3ad07c8d", + "language": "Python", + "lines": 125, + "truncated": false, + "block": 1, + "row": 7673 + }, + { + "path": "isoquant_lib/modes.py", + "sha256": "e855f266f199aa8f1bf05d1bc1cacdabda8f284405c69d7e9057560f3f41dacd", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 1, + "row": 6600 + }, + { + "path": "isoquant_lib/parallel_workers.py", + "sha256": "f7db9c53b4cebb8b68df76f8c51c718194f27e004b3d8cdd3d317d9a998cfdbf", + "language": "Python", + "lines": 407, + "truncated": false, + "block": 1, + "row": 9352 + }, + { + "path": "isoquant_lib/processed_read_manager.py", + "sha256": "5f97b55c959e7517988bfc4fb9aa23eee7f241773e261292657b8128fd5ca82e", + "language": "Python", + "lines": 193, + "truncated": false, + "block": 1, + "row": 8216 + }, + { + "path": "isoquant_lib/quantification/__init__.py", + "sha256": "752b7bf5a2f3810823c5d62e78f6579a26363d3d49296bcfc464517ddf0f7bef", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 1, + "row": 5228 + }, + { + "path": "isoquant_lib/quantification/convert_grouped_counts.py", + "sha256": "00acd37c84a62d26a8a52a88b388061c6bc9c62f5f40d0a41f74bea70e8d59b0", + "language": "Python", + "lines": 409, + "truncated": false, + "block": 1, + "row": 9243 + }, + { + "path": "isoquant_lib/quantification/long_read_counter.py", + "sha256": "d411f31bbde137e4625711b3307cb951eb2acd772049f6d3c8f9f610486ceda2", + "language": "Python", + "lines": 1129, + "truncated": false, + "block": 1, + "row": 9777 + }, + { + "path": "isoquant_lib/scripts/__init__.py", + "sha256": "8f845c2809d67c7c27f671bb5a9e46d20f40aaa29194167f6c8ae89d213b9f65", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 1, + "row": 5329 + }, + { + "path": "isoquant_lib/scripts/barcodes_seq_to_spot_id.py", + "sha256": "4f2b75a176102b83c5724b075bf5c70ef1af5a91dc67647c001d0ba4e26c1006", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 1, + "row": 7124 + }, + { + "path": "isoquant_lib/scripts/convert_read_info.py", + "sha256": "e34fb6e83fb79ce7e0130a6062df32d3c2b9aad00ae91b3aa791a0c9c624cfd1", + "language": "Python", + "lines": 226, + "truncated": false, + "block": 1, + "row": 8030 + }, + { + "path": "isoquant_lib/scripts/exon_splice_site_to_group_lists.py", + "sha256": "808453cd524bd252995a17e729351f3fb217dec99ed330d4490b54e2ce409875", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 1, + "row": 7146 + }, + { + "path": "isoquant_lib/scripts/inject_bam_tags.py", + "sha256": "bfd2e71f3854750dbb59597dd4dbf4b7e49d82ddc82fdba6dda512ed8f36fc68", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 1, + "row": 7055 + }, + { + "path": "isoquant_lib/scripts/prepare_visium_spot_ids.py", + "sha256": "38a7cf36849ff2443d1250d0846537b05bbf4eaf302decb7924919e68bf72554", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 1, + "row": 7667 + }, + { + "path": "isoquant_lib/terminal_prediction/__init__.py", + "sha256": "978dd81eef4948623838afabafd31277c1acb655cb82fa8c3565ae5fee17f957", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 1, + "row": 5300 + }, + { + "path": "isoquant_lib/terminal_prediction/cage_finder.py", + "sha256": "b2bb1c224ef5e3546f58b9aa07c5b42a96801ab982804d1ebd905a91bff54cba", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 1, + "row": 6212 + }, + { + "path": "isoquant_lib/terminal_prediction/polya_finder.py", + "sha256": "5612f7dda1f8f1f6af6d219c8342511bd879d9bb9428805bf8de8f5114fadb7c", + "language": "Python", + "lines": 231, + "truncated": false, + "block": 1, + "row": 8420 + }, + { + "path": "isoquant_lib/terminal_prediction/polya_verification.py", + "sha256": "abf514ab50a24a4e90863c05e4f98066960530dca158d5cd650c9b751d300a3a", + "language": "Python", + "lines": 390, + "truncated": false, + "block": 1, + "row": 9337 + }, + { + "path": "isoquant_lib/terminal_prediction/terminal_counter.py", + "sha256": "d4a8cfe1793a9079ac33a41b9836c18ac4c54d42d3533a8c442822f09ee751c0", + "language": "Python", + "lines": 546, + "truncated": false, + "block": 1, + "row": 9443 + }, + { + "path": "isoquant_lib/terminal_prediction/terminal_peaks.py", + "sha256": "59aa5f417721f02834f475cd71ff72b2d86f206208cb471c42e3aa3e37cb2ae8", + "language": "Python", + "lines": 221, + "truncated": false, + "block": 1, + "row": 8296 + }, + { + "path": "isoquant_lib/utils/error_codes.py", + "sha256": "4b3eccc62b630dbc541978aa75bfb602119a135125897842181c322c2c911470", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 1, + "row": 6276 + }, + { + "path": "isoquant_lib/utils/file_naming.py", + "sha256": "7c23597ca4053e5c31ce1a2dd246b11b00ea9783f877948d4ee8bb031a9fa586", + "language": "Python", + "lines": 197, + "truncated": false, + "block": 1, + "row": 7818 + }, + { + "path": "isoquant_lib/utils/file_utils.py", + "sha256": "737c0363f5a4fc78c6c87a8114e200c7d634e488f332548a29453bb5be2acdbc", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 1, + "row": 6946 + }, + { + "path": "isoquant_lib/utils/id_policy.py", + "sha256": "a77ca1a61cfe04f8a58e35f37f79c065c982885caffd0ad68a3d1fb1f92297e1", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 1, + "row": 6777 + }, + { + "path": "isoquant_lib/utils/input_data_storage.py", + "sha256": "2a8cd5cd1d03957c4609a90083c8cab060b8f5665f91501588628b557b3af3cc", + "language": "Python", + "lines": 503, + "truncated": false, + "block": 1, + "row": 9513 + }, + { + "path": "isoquant_lib/utils/read_mapper.py", + "sha256": "5dfc13bd6b28cbe1ca21d28f8557061a4006918bfb4f8194b12842139b9418ee", + "language": "Python", + "lines": 441, + "truncated": false, + "block": 1, + "row": 9350 + }, + { + "path": "isoquant_lib/utils/serialization.py", + "sha256": "5b1218d031083a4c54f472fc626b758409daf0b68a9e77aea3d95c3f82f3c69c", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 1, + "row": 7424 + }, + { + "path": "isoquant_lib/utils/stats.py", + "sha256": "e8ad95a040fb4c6e98e64bedc2146fec6e7f9bbe4b4734c3987aa3e9ed745fb2", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 1, + "row": 6782 + }, + { + "path": "isoquant_lib/utils/string_pools.py", + "sha256": "9dfbf946936cbdd67d1526318e9a3f8b7e2fac9ad3e7e3b8c6a6c304b62ea1cb", + "language": "Python", + "lines": 660, + "truncated": false, + "block": 1, + "row": 9531 + }, + { + "path": "isoquant_lib/utils/table_splitter.py", + "sha256": "4342f3382d6f0126ac8b92578490ba045093a090a57ff3d24e1ffc1dc5fad64d", + "language": "Python", + "lines": 299, + "truncated": false, + "block": 1, + "row": 8694 + }, + { + "path": "isoquant_lib/visualizer/__init__.py", + "sha256": "ff4de4fe23f96dbc2adfb97429b37249fa3f48365717c192aecac039efd203c3", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 1, + "row": 5283 + }, + { + "path": "isoquant_lib/visualizer/gene_model.py", + "sha256": "0a26821b566c87e9f66667180bde8b4210572c0d8f1a4ce13b809b59dfacc5f8", + "language": "Python", + "lines": 303, + "truncated": false, + "block": 1, + "row": 8497 + }, + { + "path": "isoquant_lib/visualizer/plot_output.py", + "sha256": "14f6f9c8725a66265fa9a4f9ad2c59f1fe112393980d19e21dd20748d16d6947", + "language": "Python", + "lines": 263, + "truncated": false, + "block": 1, + "row": 8503 + }, + { + "path": "isoquant_lib/visualizer/post_process.py", + "sha256": "3f2a894d03743d1de032f5163ed93737b1713b50acd0edfc3a1209d6dc6f6371", + "language": "Python", + "lines": 681, + "truncated": false, + "block": 1, + "row": 9606 + }, + { + "path": "isoquant_lib/visualizer/process_dict.py", + "sha256": "bd6849a3f5c602428c808a9d802ce14f3c43454ae613f409b43bb2050d13803f", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 1, + "row": 6873 + }, + { + "path": "isoquant_tests/__init__.py", + "sha256": "f49b6fa9a44d07de6e1deeb33e5fe2fc0dea3ca4ce90775a88672d2116b0a1a3", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 1, + "row": 5192 + }, + { + "path": "isoquant_tests/console_test.py", + "sha256": "24a4fb696f44ff457c225c4bc37dd4dafae7de0d9591dfe7a28e6e2aea3c55db", + "language": "Python", + "lines": 239, + "truncated": false, + "block": 1, + "row": 8723 + }, + { + "path": "isoquant_tests/github/cfg2yaml.py", + "sha256": "af8589bbc312005d659d99ff3984958923c18bf84588e5085626948172371480", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 1, + "row": 7645 + }, + { + "path": "isoquant_tests/github/error_codes.py", + "sha256": "1e8fd6630117374b328e6df978a56a765353285ce69f21000b894efb398c8e02", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 1, + "row": 6003 + }, + { + "path": "isoquant_tests/github/generate_resume_test.sh", + "sha256": "2392944320830cf41ab64a40fab2da464e04e361ea69513e8b12adf517f542d9", + "language": "Shell", + "lines": 8, + "truncated": false, + "block": 1, + "row": 11714 + }, + { + "path": "isoquant_tests/github/performance_counter.py", + "sha256": "9d5fd523c0b72f685512535137a41b575f109d6ac5f6f567a3a3f3c099141896", + "language": "Python", + "lines": 232, + "truncated": false, + "block": 1, + "row": 8342 + }, + { + "path": "isoquant_tests/github/run_barcode_test.py", + "sha256": "65d0f5f04080ee55f610440bea30a736bfc937077bf088451b492ac8ca461558", + "language": "Python", + "lines": 479, + "truncated": false, + "block": 1, + "row": 9136 + }, + { + "path": "isoquant_tests/github/run_pipeline.py", + "sha256": "e1775043217736a03a104dd61c8e76a3f46985eebb8fbd349dea356d3f80722d", + "language": "Python", + "lines": 838, + "truncated": false, + "block": 1, + "row": 9676 + }, + { + "path": "isoquant_tests/github/run_until.py", + "sha256": "c689bf6a61ce9dd48258c224b299cafc5866528080446045db2a917efe8893e4", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 1, + "row": 6074 + }, + { + "path": "isoquant_tests/github/update_defaults.py", + "sha256": "50f526d84ad6b2fd57153bc2e5c17a7af174801ae40ca5a430873264d7b9a775", + "language": "Python", + "lines": 180, + "truncated": false, + "block": 1, + "row": 7894 + }, + { + "path": "isoquant_tests/test_alignment_info.py", + "sha256": "8bde58c7ed5b8dda9dff10ab00190049c3b0e1bac939f64b5d0a5a95ac2642db", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 1, + "row": 7573 + }, + { + "path": "isoquant_tests/test_assess_assignment_quality.py", + "sha256": "da5dfaa5b2392e51698ff197254cf2486ee1773b0c5600b4b64a042f2e4c7d98", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 1, + "row": 7114 + }, + { + "path": "isoquant_tests/test_barcode2barcode.py", + "sha256": "0cd6f0677bd3b4d0eb5fa4d331bcf5947e05851f082074d7ecbe6493ac7aa54b", + "language": "Python", + "lines": 493, + "truncated": false, + "block": 1, + "row": 9293 + }, + { + "path": "isoquant_tests/test_barcode_callers.py", + "sha256": "f5c8f512a281a40977532547a0f19a4cf57632c0112dd6f918d1e71a03113de7", + "language": "Python", + "lines": 571, + "truncated": false, + "block": 1, + "row": 9275 + }, + { + "path": "isoquant_tests/test_barcode_common.py", + "sha256": "e63a1ec84f36ef870723f1dce9e52fac0512cf15aa05b1d96e0fef99f0b99ad7", + "language": "Python", + "lines": 540, + "truncated": false, + "block": 1, + "row": 9300 + }, + { + "path": "isoquant_tests/test_barcode_detectors.py", + "sha256": "1e4798a101fd999025c356f30dd3a5cda42e25d3b565f91abe77d8bd01030136", + "language": "Python", + "lines": 808, + "truncated": false, + "block": 1, + "row": 9817 + }, + { + "path": "isoquant_tests/test_ci_config.py", + "sha256": "635bf61ccbaa058075df97cffaad8886d127fb4c2b448fe0be970756d48a29a9", + "language": "Python", + "lines": 564, + "truncated": false, + "block": 1, + "row": 9363 + }, + { + "path": "isoquant_tests/test_common.py", + "sha256": "b423a5cdefadc064ef26bf0d76e6a20d22b25d34ea000f2e435c0d1c56397a18", + "language": "Python", + "lines": 375, + "truncated": false, + "block": 1, + "row": 9374 + }, + { + "path": "isoquant_tests/test_common_utilities.py", + "sha256": "f0fc3dd608afbb242fc61cc9eb4a6752e7a98189e0e8a42740ba53c631dc7efe", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 1, + "row": 6202 + }, + { + "path": "isoquant_tests/test_enum_stats.py", + "sha256": "9a102ab767cd702886e3359dab4b08320dde48962ec5f33ae542283c6eef9d07", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 1, + "row": 6437 + }, + { + "path": "isoquant_tests/test_exon_splice_site_counter.py", + "sha256": "8201a5ce9b3052583c3582f1bff4fc35324838940832c049aaeceef00428d891", + "language": "Python", + "lines": 381, + "truncated": false, + "block": 1, + "row": 9067 + }, + { + "path": "isoquant_tests/test_feature_count_dedup.py", + "sha256": "1cf57ef0050642943402ea29bccb1fc1e48d14a518401a7d12c91d89b8010aba", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 1, + "row": 7440 + }, + { + "path": "isoquant_tests/test_file_naming.py", + "sha256": "aeba295d3ff86ab7060a672fe1b9c1e220047d6dec4290cfa422f2c2be5cd9e7", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 5985 + }, + { + "path": "isoquant_tests/test_file_utils.py", + "sha256": "d224ed897621e0fa560013db2255913abb8bc67c23ceb06d7a98a992369752d5", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 1, + "row": 6837 + }, + { + "path": "isoquant_tests/test_fusion_detector.py", + "sha256": "ec80a6df89038726724aeead819b0460377554a8976c0a0c1a74d3c59e4f17ac", + "language": "Python", + "lines": 821, + "truncated": false, + "block": 1, + "row": 9679 + }, + { + "path": "isoquant_tests/test_fusion_metadata.py", + "sha256": "ed19a2f7bd0db2f686e5a484df78aa1146d6e65ab4af00714301b9be1501c895", + "language": "Python", + "lines": 639, + "truncated": false, + "block": 1, + "row": 9461 + }, + { + "path": "isoquant_tests/test_fusion_validator.py", + "sha256": "323e901fb579e8cd25945ffbc162830b871f24af8da179844340a6986cb1a601", + "language": "Python", + "lines": 703, + "truncated": false, + "block": 1, + "row": 9594 + }, + { + "path": "isoquant_tests/test_gene_info.py", + "sha256": "3f3ff7cc011c55bd56f0c6f1d5db2e5d3cb4884b00cf949ec972c1b837fb09cb", + "language": "Python", + "lines": 134, + "truncated": false, + "block": 1, + "row": 7731 + }, + { + "path": "isoquant_tests/test_genomic_interval_index.py", + "sha256": "09f3f917610a04575b540549644d562fe78af4cdc3b5955de6469ebf82f7effb", + "language": "Python", + "lines": 369, + "truncated": false, + "block": 1, + "row": 9156 + }, + { + "path": "isoquant_tests/test_get_path_to_program.py", + "sha256": "a6d83c6a43d91af2e9dc3985a0a08d12b6b5b72832536c91759e5c754c39e3a0", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 1, + "row": 6366 + }, + { + "path": "isoquant_tests/test_graph_alt_ends.py", + "sha256": "8f40eed2d12902487e1c1b756c2b1d9556e4e0ee63a4316d4b62d50368e94529", + "language": "Python", + "lines": 225, + "truncated": false, + "block": 1, + "row": 8505 + }, + { + "path": "isoquant_tests/test_id_distributor.py", + "sha256": "6ad4a03e6b370f29b8f1095a081df4ce40b85c8eaf8ca8449f38461d31d45745", + "language": "Python", + "lines": 235, + "truncated": false, + "block": 1, + "row": 8263 + }, + { + "path": "isoquant_tests/test_illumina_exon_corrector.py", + "sha256": "c9e89f2ae029891d712dded801a23722a435117895f17b3e48fd3ff07a749b86", + "language": "Python", + "lines": 103, + "truncated": false, + "block": 1, + "row": 8558 + }, + { + "path": "isoquant_tests/test_intron_graph.py", + "sha256": "c39d094bd3c46577e6e6617a212b84520307e4218a13aabcbc9c0646deab66e0", + "language": "Python", + "lines": 374, + "truncated": false, + "block": 1, + "row": 9004 + }, + { + "path": "isoquant_tests/test_intron_graph_refine.py", + "sha256": "19f800c03fa86e3a0623b02064e76d836eaca52372ee5127af9febe4799fcf68", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 1, + "row": 6858 + }, + { + "path": "isoquant_tests/test_iso_quant_mode.py", + "sha256": "92d432f814a0f942f066d3d1d718a5af56af98677345b62c5349a7cf9f556499", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 1, + "row": 6691 + }, + { + "path": "isoquant_tests/test_joint_exon_counter.py", + "sha256": "e7487e607faef76a0f7987f1f9aae03e9587189ab864b7cc6a047381f9b15441", + "language": "Python", + "lines": 198, + "truncated": false, + "block": 1, + "row": 8302 + }, + { + "path": "isoquant_tests/test_junction_comparator.py", + "sha256": "522570660d5f9e08ed70f4176b3f2f69312f912296abdd034738f1c28933d86b", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 1, + "row": 5892 + }, + { + "path": "isoquant_tests/test_kmer_indexer.py", + "sha256": "74991bb4db48c5da4b5dd2d0865e95810659fb88656ae70dcb5476348a460b21", + "language": "Python", + "lines": 404, + "truncated": false, + "block": 1, + "row": 8974 + }, + { + "path": "isoquant_tests/test_long_read_assigner.py", + "sha256": "594e4f58c549409538b43e8cbba6175f3b171051fc56e7606f3654b5f5131d10", + "language": "Python", + "lines": 660, + "truncated": false, + "block": 1, + "row": 9760 + }, + { + "path": "isoquant_tests/test_long_read_profile.py", + "sha256": "6fa136156ec3ff120b0ca1ea16375c12c8f32b098338e94ff5522b307b9863e4", + "language": "Python", + "lines": 155, + "truncated": false, + "block": 1, + "row": 8675 + }, + { + "path": "isoquant_tests/test_molecule_structure.py", + "sha256": "8de4c56beaa85240a799d8dbc3739a5ac0f2cb5a42d5da1183d00a888a844f9b", + "language": "Python", + "lines": 630, + "truncated": false, + "block": 1, + "row": 9452 + }, + { + "path": "isoquant_tests/test_output_formats.py", + "sha256": "fa005b2e089010f03f419a104938cd5a10d148f5cd43852e25bb281d91405b42", + "language": "Python", + "lines": 357, + "truncated": false, + "block": 1, + "row": 9044 + }, + { + "path": "isoquant_tests/test_polya_cage_finder.py", + "sha256": "dddc33f35c3c3bf564813bc3014401f626aee9472aa5b7ee416645bc803c1157", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 1, + "row": 7768 + }, + { + "path": "isoquant_tests/test_polya_prediction.py", + "sha256": "07feac449fcf485be61eb3c49fb225699a27ce0fcedc3e4c2d9d94a2bf0687d3", + "language": "Python", + "lines": 404, + "truncated": false, + "block": 1, + "row": 9071 + }, + { + "path": "isoquant_tests/test_read_groups.py", + "sha256": "ae3333cccadfce1f5b81f3b8bd395e583ef21eb5709e65d37dbc7790a7a0168f", + "language": "Python", + "lines": 538, + "truncated": false, + "block": 1, + "row": 9358 + }, + { + "path": "isoquant_tests/test_serialization.py", + "sha256": "dbe6aff662423ffa5982de69354150a0fc64928e110cc5b7608fe9664450e56b", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 1, + "row": 7400 + }, + { + "path": "isoquant_tests/test_shared_mem_index.py", + "sha256": "3ea8f54b35f4053652924277ae2759c621d27a30727da965b5f8493aa3ba544d", + "language": "Python", + "lines": 197, + "truncated": false, + "block": 1, + "row": 8058 + }, + { + "path": "isoquant_tests/test_string_pools.py", + "sha256": "4d59823843bbfbee2de4ef1d580e1d6c7f078ea5ea5593cfb78b5163ac741088", + "language": "Python", + "lines": 599, + "truncated": false, + "block": 1, + "row": 9368 + }, + { + "path": "isoquant_tests/test_terminal_peaks.py", + "sha256": "96a857b2849c3ea3e5f5c1da80e7a7575c2aaab25a70b337ed0349ea722210b9", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 1, + "row": 6950 + }, + { + "path": "isoquant_tests/test_transcript_splice_site_corrector.py", + "sha256": "ab4149c4bdd0710be87500fb9babae18260307fb2712e10afa6f9421827aa63a", + "language": "Python", + "lines": 251, + "truncated": false, + "block": 1, + "row": 8682 + }, + { + "path": "isoquant_tests/test_umi_filtering.py", + "sha256": "637b85cd0cd47b43a08717b5edd6a7e64c5157d47495033d5f410d518a15ad1d", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 1, + "row": 7904 + }, + { + "path": "isoquant_tests/test_universal_extraction.py", + "sha256": "636ec71c4a063ecd5c5ac9f03c54653e1f0a437aef5f93d0772c40cb627e70f9", + "language": "Python", + "lines": 1102, + "truncated": false, + "block": 1, + "row": 9741 + }, + { + "path": "make-targz.sh", + "sha256": "d1f31db83e95d924a4943e9a95e86c13c538ddd7164798fdc53b8bf9d407d2a9", + "language": "Shell", + "lines": 46, + "truncated": false, + "block": 1, + "row": 11609 + }, + { + "path": "misc/all_commands.sh", + "sha256": "d567ad54214913b2e53f3a66f86bf18dab4302b081768ef89bc1b387d50e572a", + "language": "Shell", + "lines": 106, + "truncated": false, + "block": 1, + "row": 11736 + }, + { + "path": "misc/assess_allinfo_quality.py", + "sha256": "a0ffa838b8fde1c272f99166952fd5780321f644b88971eb06542beb1764092d", + "language": "Python", + "lines": 191, + "truncated": false, + "block": 1, + "row": 7766 + }, + { + "path": "misc/assess_assignment_quality.py", + "sha256": "9ce1424613ec07dcfbc6c592f11887a07d23f023c60a24c21d0ad824764d8754", + "language": "Python", + "lines": 451, + "truncated": false, + "block": 1, + "row": 9319 + }, + { + "path": "misc/assess_barcode_quality.py", + "sha256": "2fcd2076338511af24d2b55b31dffd6072734184efa5334f57e6a2ab4cd4980b", + "language": "Python", + "lines": 625, + "truncated": false, + "block": 1, + "row": 9411 + }, + { + "path": "misc/assess_fusion_quality.py", + "sha256": "fc965437f35f1ed5bc13e2dee9fe69e9e60800d5130c0f39990071d0d8964efd", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 1, + "row": 7517 + }, + { + "path": "misc/assess_polya_prediction.py", + "sha256": "d81d560239bb22fae95d208cf3a94383cc23411440d46804e0ca1f7e56358863", + "language": "Python", + "lines": 422, + "truncated": false, + "block": 1, + "row": 9117 + }, + { + "path": "misc/assess_quantification.py", + "sha256": "88fcc184f8b2edcb216c6b1ef321c23a228a20421a11bc2a2814c69aed3b60a8", + "language": "Python", + "lines": 258, + "truncated": false, + "block": 1, + "row": 8385 + }, + { + "path": "misc/common.py", + "sha256": "90881b9ed026a4d9e1e565284722041faf3c27922a4522a2793fd7b48aa9672a", + "language": "Python", + "lines": 161, + "truncated": false, + "block": 1, + "row": 7433 + }, + { + "path": "misc/copyrighter.py", + "sha256": "fd487aa9d976ba8940f610c3e91ed417f20f50cb6354a69621766460aba9254b", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 1, + "row": 7628 + }, + { + "path": "misc/correction_only.py", + "sha256": "35b761d011346c7f11a5a66926259abc3a8e2f7c4deff0bd3ab94d81fa8b349a", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 1, + "row": 7530 + }, + { + "path": "misc/correction_stats.py", + "sha256": "e64570ea703dd919e6e9e64daf5956b9e01c2c46f02856d1d85234d56058e808", + "language": "Python", + "lines": 154, + "truncated": false, + "block": 1, + "row": 8004 + }, + { + "path": "misc/create_stereo_test_subsets.py", + "sha256": "25a49c4e5bced37c789976e603eef5fdb234686a8d0cdb2867bdb7c170735734", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 1, + "row": 7100 + }, + { + "path": "misc/create_test_barcodes.py", + "sha256": "718e4f2f46ab255b47b88bae7f8cf2bd1dc5426246422b42c2e893b8aa7691c2", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 1, + "row": 6601 + }, + { + "path": "misc/denovo_analyse.py", + "sha256": "a583440268004b41b298756d79bedd354344984a5346969c82867e7d09430c6c", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 1, + "row": 7216 + }, + { + "path": "misc/denovo_model_stats.py", + "sha256": "3ea73723036d6f041307e1dc29a55e508a43e0011540d9956f8605212c33813b", + "language": "Python", + "lines": 128, + "truncated": false, + "block": 1, + "row": 7418 + }, + { + "path": "misc/gtf_stats.py", + "sha256": "a475b08266ff8ac76d7da4d44faf6b74aebbe2d7e75e372aeee685869810977c", + "language": "Python", + "lines": 231, + "truncated": false, + "block": 1, + "row": 8389 + }, + { + "path": "misc/isoseq_quantification.py", + "sha256": "48398083244bddf4c881f30f7a73ea76e13102cf898fcb1f77e17c5f37b85a22", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 1, + "row": 8101 + }, + { + "path": "misc/nanosim_quantification.py", + "sha256": "d647c216bd008329307e4f24278bc4d84abc7c9017a08fcdc63478c7960d25fa", + "language": "Python", + "lines": 208, + "truncated": false, + "block": 1, + "row": 8260 + }, + { + "path": "misc/prepare_simulated_reduced_db.py", + "sha256": "69068d632d4385d15e7d66180e9ada9b5ed828efe9e7aca7a6e53caa12abce70", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 1, + "row": 7177 + }, + { + "path": "misc/quantification_stats.py", + "sha256": "6c6e22be501715381f3c98901c59d0fbc78184e25536aad152fa18cdfb007ffe", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 1, + "row": 7774 + }, + { + "path": "misc/reduced_db_gffcompare.py", + "sha256": "834c1dfdfec07320579af3cbf758ba80a337ecadf298fe3ecf84382f0977e2b3", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 1, + "row": 6868 + }, + { + "path": "misc/short_utils.py", + "sha256": "0fd5689220621dca705fd07d42553ae31a8539e8278bb6a3fa3d7c127b8c0056", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 1, + "row": 5747 + }, + { + "path": "misc/split_gffcompare.py", + "sha256": "a850981b0d3cc3fe33271db04d8bbf9859342f70bf07a86d15f099f68b3d1380", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 1, + "row": 6488 + }, + { + "path": "misc/tpm_stats_precision.py", + "sha256": "2281eef5b0757b0f52cb7ad8302d1ae138bb8f01b0369d3eda1e3d3ca7146f2d", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 1, + "row": 7683 + }, + { + "path": "misc/tpm_stats_recall.py", + "sha256": "0cd9ac46147a0383a121b5d21f12d081a78bc20ae1938a66ca04cbfdcd78a969", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 1, + "row": 7169 + }, + { + "path": "misc/train_polya_tss_model.py", + "sha256": "ca4f1874b195fa5ff84ce2db50e3421192aa53b523fcb2ff27ded462b8b936e1", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 1, + "row": 7313 + }, + { + "path": "splisoquant.py", + "sha256": "4d2d76a4bc33eb980b4facbc2759ca0b159f771464e60e4e3dc9837ec4ccf93a", + "language": "Python", + "lines": 1479, + "truncated": false, + "block": 1, + "row": 9840 + }, + { + "path": "splisoquant_detect_barcodes.py", + "sha256": "ca683c9a779ab9e669b1b2ed1f411291948cdc82848b8986204c7233f2d1342c", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 1, + "row": 7172 + }, + { + "path": "splisoquant_visualize.py", + "sha256": "46523510b0b60a169ef8886ce16ee8c2936525bf8f0fa69137d4b95a4f0479b5", + "language": "Python", + "lines": 184, + "truncated": false, + "block": 1, + "row": 7856 + } + ] +} \ No newline at end of file diff --git a/manifests/4f/github.com__bfinl__stsi.json b/manifests/4f/github.com__bfinl__stsi.json new file mode 100644 index 0000000000000000000000000000000000000000..0e231588ab36935fa2495dd82efbb1bc81e0226b --- /dev/null +++ b/manifests/4f/github.com__bfinl__stsi.json @@ -0,0 +1,165 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/bfinl/stsi", + "url": "https://github.com/bfinl/STSI", + "host": "github.com", + "commit": "98ec2c90434f01624cd843b374f3ffc40c11dc28", + "license": "CC-BY-NC-SA-4.0", + "license_confirmed_by": "license file LICENSE.md", + "redistribution": "with_conditions", + "files": [ + { + "path": "Codes/Example_Patient1_Event1_pHFO.m", + "sha256": "f30b961413a4509a24e5ec2117b9869f8f4dee338d47c2ffde227cfea650a340", + "language": "MATLAB", + "lines": 548, + "truncated": false, + "block": 1, + "row": 4172 + }, + { + "path": "Codes/Example_Patient1_Event1_pSpk.m", + "sha256": "8f53df6e975142c458ad4f7dc3b78cca183a970ea1c16d26ff012e9f3be4f655", + "language": "MATLAB", + "lines": 565, + "truncated": false, + "block": 1, + "row": 4178 + }, + { + "path": "Codes/Example_Patient1_Seizure1.m", + "sha256": "29cf0bd12c70f5f9d7dd0dc77bb8de5c9fd58475e2dda58e06c24bb31f2b4891", + "language": "MATLAB", + "lines": 552, + "truncated": false, + "block": 1, + "row": 4174 + }, + { + "path": "Codes/RelevantFunctions/Area.m", + "sha256": "68089bf6f9a6f09a6e30ed11f1714a900eca6588102cdc2d5857c750fef9b721", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 1, + "row": 2496 + }, + { + "path": "Codes/RelevantFunctions/CortexViewInit.m", + "sha256": "96cb61a0a58ea44f6194ac4d1c56f25a963f42bb0748898370e11bf7efade281", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 1, + "row": 2430 + }, + { + "path": "Codes/RelevantFunctions/FISTA_ADMM_IRES_Tensor.m", + "sha256": "631705c3c7c432bdb03f47ba24befb412f5ad179d64a4f46f4bee8a1123fef3a", + "language": "MATLAB", + "lines": 159, + "truncated": false, + "block": 1, + "row": 3613 + }, + { + "path": "Codes/RelevantFunctions/Find_Patch.m", + "sha256": "c478668cf8a122d6d6163a005e993d6a4ae91a041e0d02d6ba8826c41401b61d", + "language": "MATLAB", + "lines": 76, + "truncated": false, + "block": 1, + "row": 3251 + }, + { + "path": "Codes/RelevantFunctions/Proj_Flat_Hyper_Ellips.m", + "sha256": "71deea9372c8059bc64cecf3a167329129880b83462533c23114a681a79f8481", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 1, + "row": 3222 + }, + { + "path": "Codes/RelevantFunctions/cvx_check_dimension.m", + "sha256": "27af519975df259850199c3c0036aec1dee9656fecb4aceba23000edda544b7f", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 1, + "row": 2672 + }, + { + "path": "Codes/RelevantFunctions/cvx_default_dimension.m", + "sha256": "52dfa993c1d001698d543be63db5b443707ca6be7a0815ea08b5bea61f7104a6", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 1, + "row": 2725 + }, + { + "path": "Codes/RelevantFunctions/norms.m", + "sha256": "64ce0368e9935f9a36320fef2a9361b3844b06df3a5be8294d60696de82a4a1d", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 1, + "row": 3198 + }, + { + "path": "Codes/RelevantFunctions/trisurf_customized.m", + "sha256": "8c251ced2e69f546136deb0852fd373f512bdeeb3471905c314209c9176778c0", + "language": "MATLAB", + "lines": 108, + "truncated": false, + "block": 1, + "row": 3302 + }, + { + "path": "Codes/startup_patient.m", + "sha256": "8ff02e0b671958cfcc31ad0db8cde5075c02489c556fa3b04fe5362fba7814b4", + "language": "MATLAB", + "lines": 66, + "truncated": false, + "block": 1, + "row": 3159 + }, + { + "path": "Grid_Location_Parameters/Example_Patient1/LFD_Fxd_Vertices.m", + "sha256": "7cde94ebaad0448ab7dde6179f569dda7ba8e3aeaa42bdaa6e01c82a5a386fde", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 1, + "row": 2902 + }, + { + "path": "Grid_Location_Parameters/Example_Patient1/LFD_Rot_Vertices.m", + "sha256": "bd9f2beacbf9c9728e9da1a53ffb410ae9d8c9a0a5ca12adaaa55b6f6eb4aa02", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 1, + "row": 2903 + }, + { + "path": "LICENSE.md", + "sha256": "14792df6e97d717d4b2d3761665bd48dbbad57838350d77d6689711ba8da3d96", + "language": "License", + "lines": 441, + "truncated": false, + "block": 1, + "row": 2229 + }, + { + "path": "README.md", + "sha256": "e49c475370ebbfec2becf88ccf64f297903f53951d247817883364ccc7e17085", + "language": "Text", + "lines": 9, + "truncated": false, + "block": 1, + "row": 11796 + } + ] +} \ No newline at end of file diff --git a/manifests/4f/github.com__whfbio__pip_seq.json b/manifests/4f/github.com__whfbio__pip_seq.json new file mode 100644 index 0000000000000000000000000000000000000000..aa8e5fb59499c6961754c99b535e68dd3ef80aba --- /dev/null +++ b/manifests/4f/github.com__whfbio__pip_seq.json @@ -0,0 +1,228 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/whfbio/pip_seq", + "url": "https://github.com/whfbio/PIP_seq", + "host": "github.com", + "commit": "102d80e6ea5de44f594461c727a4b3c6e1bc3508", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Figure1/1.0_snRNA_Manual_Annotation.R", + "sha256": "a4e685c64847afdd0f7150d4eda9bce066f25b7c3aee3aaf81137488ef867ad3", + "language": "R", + "lines": 944, + "truncated": false, + "block": 1, + "row": 10596 + }, + { + "path": "Figure1/1.1_snRNA_ref_dataset_creation.R", + "sha256": "700173be53e13d66d26b652edadb1571f57565ea03e09e2cd5ca92cb503ab232", + "language": "R", + "lines": 454, + "truncated": false, + "block": 1, + "row": 10533 + }, + { + "path": "Figure1/1.2_Cytospace.R", + "sha256": "bb340dfc59ba670fb02cf4aa6f12d250ccd15bbf79a40ae408a2c434402cb1ce", + "language": "R", + "lines": 51, + "truncated": false, + "block": 1, + "row": 10137 + }, + { + "path": "Figure1/1.3_Cytospace_run.sh", + "sha256": "9c43ae664bfdec92e4206c96b78aa0863ae1280c6d60e3348d1529d1826e7f87", + "language": "Shell", + "lines": 41, + "truncated": false, + "block": 1, + "row": 11652 + }, + { + "path": "Figure1/1.4_Post_Cytospace_Correlation.R", + "sha256": "3e8f2a45ecf3b0b572f487a7bb22c47d52dc51699282a54f75610c9e952d0f3b", + "language": "R", + "lines": 295, + "truncated": false, + "block": 1, + "row": 10489 + }, + { + "path": "Figure1/1.5_main_figures_generation.R", + "sha256": "ab3f4ea56e18626be7246f314274a376eca61b30bb2aeb7e69c82aa25a190003", + "language": "R", + "lines": 446, + "truncated": false, + "block": 1, + "row": 10561 + }, + { + "path": "Figure2/2.1_commot_p0_direct.py", + "sha256": "c7a2c9a2bd09fb4e83a8c985edea521d694aaca9a2181c2fa8a185fc40413b3c", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 1, + "row": 6153 + }, + { + "path": "Figure2/2.2_commot_p0_indirect.py", + "sha256": "bc52abe0a70fa9e04269b0f4ef59a786f69ed03a6af31cd549d68530d3370925", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 1, + "row": 6044 + }, + { + "path": "Figure2/2.3_grn_p0.py", + "sha256": "0e996b8a9945ed98fec4281ed13ce37a1b584331261ae98ab6e75b8c402c19f6", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 1, + "row": 7086 + }, + { + "path": "Figure2/2.4_Commot_Result_summary.py", + "sha256": "1ab943faffba46db12e9082397227471dcb1eff36a7eb2eded5045305062c210", + "language": "Python", + "lines": 190, + "truncated": false, + "block": 1, + "row": 8321 + }, + { + "path": "Figure2/2.5_SigNET_network.R", + "sha256": "a7093bf1bb8625da09900b76c577bbaf40375392b2e67f1d8e5a757bbaafac16", + "language": "R", + "lines": 156, + "truncated": false, + "block": 1, + "row": 10300 + }, + { + "path": "Figure2/2.6_main_figure_generation.R", + "sha256": "a092dc07fa0ec8024aa442315e016e4f5a67e793770b7a562d2a3504b89010e6", + "language": "R", + "lines": 649, + "truncated": false, + "block": 1, + "row": 10591 + }, + { + "path": "Figure3/3.1_SCENIC_Integration.R", + "sha256": "b62e7dfb11fc630be362fced9cf2e413e95e7d1d55c0fc85493922437bb086f0", + "language": "R", + "lines": 117, + "truncated": false, + "block": 1, + "row": 10271 + }, + { + "path": "Figure3/3.2_SCENIC_binary_plot.R", + "sha256": "94c9ea9c7b439f86b7f44804f4c7c33ce05543faa295cf64b268747f4a09473a", + "language": "R", + "lines": 128, + "truncated": false, + "block": 1, + "row": 10272 + }, + { + "path": "Figure3/3.3_SCENIC_TF_MoranI_Spatialplot.py", + "sha256": "e522c582caba2010548d59c92ff7b6ebd00f4b4bb37872418dd93547bfb07ed3", + "language": "Python", + "lines": 206, + "truncated": false, + "block": 1, + "row": 8562 + }, + { + "path": "Figure3/3.4_Ptprm_plot.R", + "sha256": "f2c680051a898818aed8c7b930053a531060a9acc7d4ea000331c3f1f7c4d711", + "language": "R", + "lines": 72, + "truncated": false, + "block": 1, + "row": 10119 + }, + { + "path": "Figure4/4.1_Maturation_Model.py", + "sha256": "9476b6b86ea8e6e160ebf6e5b6e3b5364fca14e556e08709cb9b9a174ffcd11c", + "language": "Python", + "lines": 302, + "truncated": false, + "block": 1, + "row": 8722 + }, + { + "path": "Figure4/4.2_main_figure_generation.R", + "sha256": "04a70ea80ebfddb5572cdac80ec58fc6a192ac9cdb78122fcfcb93a0b0f24fee", + "language": "R", + "lines": 336, + "truncated": false, + "block": 1, + "row": 10498 + }, + { + "path": "Figure5/5.1_main_figure_generation.R", + "sha256": "ed0efc89898fbea7f5b1d2907b0dd77537d0235c7c73335a236d18ee622327ba", + "language": "R", + "lines": 395, + "truncated": false, + "block": 1, + "row": 10485 + }, + { + "path": "Figure6/6.1_main_figure_generation.R", + "sha256": "d98284357d8d5fafed276260ff4c487aef3d63c3fa88cb0e0955cdcef24477b2", + "language": "R", + "lines": 187, + "truncated": false, + "block": 1, + "row": 10357 + }, + { + "path": "Figure6/PS_raw_to_moduleScore_and_NT_comparisons.R", + "sha256": "51db7f10c049908c5213106b5f3da2427a307b5980b83bac78ac97dfa3715706", + "language": "R", + "lines": 303, + "truncated": false, + "block": 1, + "row": 10469 + }, + { + "path": "Figure6/ps_functions_min.R", + "sha256": "240e152864b19b5d8e740b878a60a7e94d6b7a086caa180d1d2f4d2b423ab519", + "language": "R", + "lines": 95, + "truncated": false, + "block": 1, + "row": 10196 + }, + { + "path": "LICENSE", + "sha256": "65769bd8f1c4a89205d66a39f80fad5523d93c6c891a5938b3fb26dde9657646", + "language": "License", + "lines": 7, + "truncated": false, + "block": 1, + "row": 2068 + }, + { + "path": "README.md", + "sha256": "7a8d392b900635f5d825d7679f6cbeed384b7c030e3382a39926adb9ed3d8e8c", + "language": "Text", + "lines": 32, + "truncated": false, + "block": 1, + "row": 11804 + } + ] +} \ No newline at end of file diff --git a/manifests/50/github.com__bulik__ldsc.json b/manifests/50/github.com__bulik__ldsc.json new file mode 100644 index 0000000000000000000000000000000000000000..bf626922cc00a1e80d87f10747d1717539641241 --- /dev/null +++ b/manifests/50/github.com__bulik__ldsc.json @@ -0,0 +1,246 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/bulik/ldsc", + "url": "https://github.com/bulik/ldsc", + "host": "github.com", + "commit": "2fdeeb3b44379408794154993dbd6101b8946b7e", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "ContinuousAnnotations/quantile_M.pl", + "sha256": "73fa085561bc26edcd39ca07469574827217853c7e7b21a10d953d1d5818ae83", + "language": "Perl", + "lines": 241, + "truncated": false, + "block": 1, + "row": 4935 + }, + { + "path": "ContinuousAnnotations/quantile_h2g.r", + "sha256": "7c01cd0b9e44ec3e9ce7d39902c1e7643277cedcc24d3d893648e3b318146a9a", + "language": "R", + "lines": 76, + "truncated": false, + "block": 1, + "row": 10156 + }, + { + "path": "LICENSE", + "sha256": "d62f065830aa3739cc031156b9690805c7b2e811b4a178c8b4acd8725d561c94", + "language": "License", + "lines": 675, + "truncated": false, + "block": 1, + "row": 2233 + }, + { + "path": "README.md", + "sha256": "f53daa5fdd1ee6ca5ec4c3b75eafe83b9c858a5698cc02e8cf9441fcb6a4cf7e", + "language": "Text", + "lines": 122, + "truncated": false, + "block": 1, + "row": 11917 + }, + { + "path": "ldsc.py", + "sha256": "db62a866856abd47f29099d638093e6d84b0164beb39c7b1b20161e311d8a163", + "language": "Python", + "lines": 660, + "truncated": false, + "block": 1, + "row": 9622 + }, + { + "path": "ldscore/irwls.py", + "sha256": "e9cb23e51440194333b6168bba0fc2800f6dbee65917ca97fcd1a9e53cbc9ab7", + "language": "Python", + "lines": 196, + "truncated": false, + "block": 1, + "row": 7725 + }, + { + "path": "ldscore/jackknife.py", + "sha256": "ced2ad44cdd065f9f93c233ce3df8ea93ac28735ca19ebda93ca29a9f8af4ddf", + "language": "Python", + "lines": 514, + "truncated": false, + "block": 1, + "row": 9208 + }, + { + "path": "ldscore/ldscore.py", + "sha256": "a5bb94b2050a1a34fa209c800cfb23724d8e1360af6764e238f5b1737db847e9", + "language": "Python", + "lines": 415, + "truncated": false, + "block": 1, + "row": 8982 + }, + { + "path": "ldscore/parse.py", + "sha256": "21c038d90840061a39b8e56a3195cc7e3ea8709b3d2e52a2f96f98f20ede965c", + "language": "Python", + "lines": 292, + "truncated": false, + "block": 1, + "row": 8568 + }, + { + "path": "ldscore/regressions.py", + "sha256": "024e230569e71e9b2e25a5368d0266c345fc34b892ed2bcd7416c3a1f149dc42", + "language": "Python", + "lines": 743, + "truncated": false, + "block": 1, + "row": 9593 + }, + { + "path": "ldscore/sumstats.py", + "sha256": "7ea98f9b46f8e9d18bae85010baacad57c3308e37c6f8fadc50a854835ae7aca", + "language": "Python", + "lines": 581, + "truncated": false, + "block": 1, + "row": 9455 + }, + { + "path": "make_annot.py", + "sha256": "ba00a28480297c48efdb51b9108b2ac4f12047e41256486a864ad58d5a3406ff", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 1, + "row": 6761 + }, + { + "path": "munge_sumstats.py", + "sha256": "4de9e61cb23ea854d7809fded7c214f3088f7539f95d0114560964313ee8df97", + "language": "Python", + "lines": 745, + "truncated": false, + "block": 1, + "row": 9610 + }, + { + "path": "setup.py", + "sha256": "04386fc9d638e97d66f21d015e184c996ae65725c327d05191b291c77b3e4dc3", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 1, + "row": 5433 + }, + { + "path": "test/parse_test/test.l2.M", + "sha256": "75e50fa16d59c94d1d0719010cf98272ee2a8c1af3e2a910b785294db09cda90", + "language": "MATLAB", + "lines": 1, + "truncated": false, + "block": 1, + "row": 2241 + }, + { + "path": "test/parse_test/test1.l2.M", + "sha256": "0c944e60f2140df3aaa1c17f7e4ed1e3699bcf647cf9e38623180ff5e86ac971", + "language": "MATLAB", + "lines": 1, + "truncated": false, + "block": 1, + "row": 2238 + }, + { + "path": "test/parse_test/test2.l2.M", + "sha256": "4e5bfd94a05464f46abcec07edd0717e8efd2181b7227dac087a2bb0e6d43053", + "language": "MATLAB", + "lines": 1, + "truncated": false, + "block": 1, + "row": 2239 + }, + { + "path": "test/parse_test/test_bad.l2.M", + "sha256": "f5156b6bae57626bc3998a8eb5352f1e5dddb756e6f30fb4c765fa07cd7d9811", + "language": "MATLAB", + "lines": 1, + "truncated": false, + "block": 1, + "row": 2240 + }, + { + "path": "test/simulate.py", + "sha256": "f8ab717407587e84dd5fca86733970512f643321fd69c4d1c2532b8312191a2d", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 1, + "row": 6553 + }, + { + "path": "test/test_irwls.py", + "sha256": "8bcb9201e633e180f272f9fe159ee69608bb653e5508d19eeecbc8bba4180e91", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 1, + "row": 6427 + }, + { + "path": "test/test_jackknife.py", + "sha256": "4570981804678788769260c3263a699c604b0c52762685fa3f1843b3890b2656", + "language": "Python", + "lines": 267, + "truncated": false, + "block": 1, + "row": 8681 + }, + { + "path": "test/test_ldscore.py", + "sha256": "a483a49110b2428c6bc82e2de55f4313499073a31a7856568dcd01c3b45b9614", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 1, + "row": 7039 + }, + { + "path": "test/test_munge_sumstats.py", + "sha256": "5aff7fd59a4d721b805dbd7d5b75a05ec2844094adcb63a53ef77dc1909c0a02", + "language": "Python", + "lines": 358, + "truncated": false, + "block": 1, + "row": 8783 + }, + { + "path": "test/test_parse.py", + "sha256": "db8908280cabd14cdfd08b472fd62a3250beba82c8910d46a889760cbfb65daa", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 1, + "row": 7295 + }, + { + "path": "test/test_regressions.py", + "sha256": "e0bd76c20e65f2dacbaaa19aef429cdad981a23ecb7a359e3ef99f31c9794e73", + "language": "Python", + "lines": 342, + "truncated": false, + "block": 1, + "row": 8863 + }, + { + "path": "test/test_sumstats.py", + "sha256": "46ec68a4be9aede3b3acd05bfda94d7e61348c5b4ace958535093f516faa9c7f", + "language": "Python", + "lines": 487, + "truncated": false, + "block": 1, + "row": 9162 + } + ] +} \ No newline at end of file diff --git a/manifests/50/zenodo__18224349.json b/manifests/50/zenodo__18224349.json new file mode 100644 index 0000000000000000000000000000000000000000..7b7296ff1d78188186345002270708d703783e5e --- /dev/null +++ b/manifests/50/zenodo__18224349.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18224349", + "url": "https://doi.org/10.5281/zenodo.18224349", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-SA-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "Kinkopf_HCA Analysis.Rmd", + "sha256": "680d95cbc30aca37d233ec1c817fcefee2293c83ef169046ccd8b6b18a4b0afb", + "language": "R", + "lines": 349, + "truncated": false, + "block": 1, + "row": 10446 + }, + { + "path": "Trombley_Intraskeletal Analysis.Rmd", + "sha256": "2cc4161866c4a5d2edc89167a7004e269b21f468e8204c3ec1c75a8661d6e237", + "language": "R", + "lines": 2206, + "truncated": false, + "block": 1, + "row": 10610 + } + ] +} \ No newline at end of file diff --git a/manifests/52/github.com__greener-group__garnet.json b/manifests/52/github.com__greener-group__garnet.json new file mode 100644 index 0000000000000000000000000000000000000000..128e9108812e9d071c651f96a0432d453c9e6eb2 --- /dev/null +++ b/manifests/52/github.com__greener-group__garnet.json @@ -0,0 +1,408 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/greener-group/garnet", + "url": "https://github.com/greener-group/garnet", + "host": "github.com", + "commit": "d594b0622ac55a7919a1826e52343d4c1d18b5a1", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "61b0365678938f30a3138f6ecf0033b1f7976dc8f7aca4a36ab9aa39abe29a6d", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2182 + }, + { + "path": "README.md", + "sha256": "177795145138902f960e8ea4fa9c8bc1807511855256dae9b8493d701ed10434", + "language": "Text", + "lines": 144, + "truncated": false, + "block": 1, + "row": 11932 + }, + { + "path": "garnetff/__init__.py", + "sha256": "1f71527949e924674d85f18a3a8f77451aca959416c44a2aeb3113b3a11a59d3", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4973 + }, + { + "path": "garnetff/garnetff.py", + "sha256": "662b7da369767ef1974e37a459921287f00e4e48f491f32905d9c04c063600ae", + "language": "Python", + "lines": 755, + "truncated": false, + "block": 1, + "row": 9704 + }, + { + "path": "garnetff/tests/test_garnet.py", + "sha256": "3fb8b76f3a556fb1faed954f34921872cc37cfd422e0f329c781dbd3a3f72550", + "language": "Python", + "lines": 200, + "truncated": false, + "block": 1, + "row": 8111 + }, + { + "path": "setup.py", + "sha256": "905ab9a7909078f859665b8a7c1f0fd9a551c5950be2a3cf7ac1c4d5bc1053d7", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 1, + "row": 5647 + }, + { + "path": "training/chem_shift.py", + "sha256": "79d16a521a05c7ec8e3681992bc95cd1733aa1322a3495e6df17aacef94adc15", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 1, + "row": 5684 + }, + { + "path": "training/data_maceoff/extract_water.jl", + "sha256": "3421cf7d8eac1a754703b80b6b86606e1bb3fd710220b7fa657fe2d1b93daab0", + "language": "Julia", + "lines": 36, + "truncated": false, + "block": 1, + "row": 1572 + }, + { + "path": "training/features/features.py", + "sha256": "ce9f7e524454d1de7436ab8d3b4d66f7fad06b86b2b661e88731d6a450e31ba4", + "language": "Python", + "lines": 133, + "truncated": false, + "block": 1, + "row": 7515 + }, + { + "path": "training/features/features_cond.py", + "sha256": "5d0c43c6f17d467d25af7b07d5cf5b8531db5a6490731c207d4f315c2ec0aafb", + "language": "Python", + "lines": 420, + "truncated": false, + "block": 1, + "row": 9308 + }, + { + "path": "training/features/features_gems.py", + "sha256": "67ed6e6e75a5a8e059584cd2521944e311bd5592e6fdc9f7509fe2ceb51898b7", + "language": "Python", + "lines": 192, + "truncated": false, + "block": 1, + "row": 8179 + }, + { + "path": "training/features/features_maceoff.jl", + "sha256": "1b317db6c92ecde9ab895c0e2785fd6730a53b063fb93a7fcf80bfe2bc771536", + "language": "Julia", + "lines": 41, + "truncated": false, + "block": 1, + "row": 1577 + }, + { + "path": "training/features/features_rna.py", + "sha256": "7cc0a3c8622e7b548435d012d9b08b31d3d77e0b82c71d7af5e0e017220bc572", + "language": "Python", + "lines": 127, + "truncated": false, + "block": 1, + "row": 7577 + }, + { + "path": "training/sim_training.py", + "sha256": "8343085ac692dc6922f9a30bf75f321b26720e8ad3300b7edddf85f8e0d1342c", + "language": "Python", + "lines": 270, + "truncated": false, + "block": 1, + "row": 8615 + }, + { + "path": "training/train.jl", + "sha256": "9472f3f323363ba61a08e4c2ed602b36ac6ec2675f9a79fff1ff118608b1b925", + "language": "Julia", + "lines": 4081, + "truncated": false, + "block": 1, + "row": 1681 + }, + { + "path": "validation/benchmarks/Datasets/spice-dataset-2.0.1/downloader/computeAtomEnergies.py", + "sha256": "05efa645324a76903a7cd161783b34f765904bc595d4405bc68dbfada06ffb62", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 1, + "row": 5962 + }, + { + "path": "validation/benchmarks/Datasets/spice-dataset-2.0.1/downloader/downloader.py", + "sha256": "77f7064ddc89cb61231e45a7f375f7b0c417f618040b06b463b0b611a08ad4bc", + "language": "Python", + "lines": 172, + "truncated": false, + "block": 1, + "row": 8136 + }, + { + "path": "validation/benchmarks/Datasets/spice-dataset-2.0.1/test/createAminoAcidLigandTest.py", + "sha256": "3a2b7d93f780cdc69f2475890363727fa9335aa54ec830334be63449c4550027", + "language": "Python", + "lines": 311, + "truncated": false, + "block": 1, + "row": 9078 + }, + { + "path": "validation/benchmarks/Datasets/spice-dataset-2.0.1/test/createTestDataset.py", + "sha256": "2e3d1839f15d32d80e945e2333aadd75bd2a3cecaccc9174f098e2d0df4ee012", + "language": "Python", + "lines": 159, + "truncated": false, + "block": 1, + "row": 7885 + }, + { + "path": "validation/benchmarks/calc_dipoles.ipynb", + "sha256": "d7c0a6f72269936e2d6fec0b56f2665cf9467c31579290895a1d7a0f3d407748", + "language": "Jupyter", + "lines": 696, + "truncated": false, + "block": 1, + "row": 2034 + }, + { + "path": "validation/benchmarks/enrich_analysis.py", + "sha256": "4aa6f666710331d1eef1a053622ba895ff02234bee99e3c65da4c87ce8224ae0", + "language": "Python", + "lines": 329, + "truncated": false, + "block": 1, + "row": 8585 + }, + { + "path": "validation/benchmarks/install_env.sh", + "sha256": "87da53982d54df44b16488961b7b1862d11a01f15557b8132fb2a4669f9e8e66", + "language": "Shell", + "lines": 25, + "truncated": false, + "block": 1, + "row": 11612 + }, + { + "path": "validation/benchmarks/main.py", + "sha256": "773a9083bd89606a7f680bfb0c22a72d1e66c60cdf024bf336cb6266f0ee4d3f", + "language": "Python", + "lines": 545, + "truncated": false, + "block": 1, + "row": 9277 + }, + { + "path": "validation/benchmarks/nmr_analysis.py", + "sha256": "5c43b89727bb4423387666de2d3c830d98663f3ed220f0a0d8fec95c1a7b3ea1", + "language": "Python", + "lines": 227, + "truncated": false, + "block": 1, + "row": 8176 + }, + { + "path": "validation/benchmarks/nmr_graphs.py", + "sha256": "4855d3804f6f427e0f19928aeb72d28e9883aa3a21f6fac0a9febb5be6cdfcf6", + "language": "Python", + "lines": 646, + "truncated": false, + "block": 1, + "row": 9164 + }, + { + "path": "validation/benchmarks/postprocess.py", + "sha256": "1ee6b1942204ddac777aad978c6b17df67b6d02be588760ea1d392df4a60f2ea", + "language": "Python", + "lines": 382, + "truncated": false, + "block": 1, + "row": 8767 + }, + { + "path": "validation/benchmarks/rmsd.py", + "sha256": "9f83c52356a8e8b36f8026a215139c1ca64daef6fb59c96e37528d9c3fcb5b4d", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 1, + "row": 5976 + }, + { + "path": "validation/benchmarks/src/chem.py", + "sha256": "d4c0c8f18971a2fec7382b441fade2c7848a3ae970afe2b07ef9816ed83f201c", + "language": "Python", + "lines": 277, + "truncated": false, + "block": 1, + "row": 8535 + }, + { + "path": "validation/benchmarks/src/datatypes.py", + "sha256": "fe5bd765c59f6ebd5292095463fc44ce5c63934b6eee911cf72c4ac1d26269f3", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 1, + "row": 5019 + }, + { + "path": "validation/benchmarks/src/geometry.py", + "sha256": "0ee0a30705cc9e6ebe5e65c6ac16c35c0da67dc3cc6f861dab83113a571d0869", + "language": "Python", + "lines": 205, + "truncated": false, + "block": 1, + "row": 7640 + }, + { + "path": "validation/benchmarks/src/graphs.py", + "sha256": "136e4d7d6b3678c735ef91e97faa65539641bfc11f11aa19eb8b624cc596c52c", + "language": "Python", + "lines": 112, + "truncated": false, + "block": 1, + "row": 7014 + }, + { + "path": "validation/benchmarks/src/hbonds.py", + "sha256": "4831e30ef861e54af6b9dfb77c0cc332d523cf15189070320f2a734ca59acbe4", + "language": "Python", + "lines": 239, + "truncated": false, + "block": 1, + "row": 8262 + }, + { + "path": "validation/benchmarks/src/io.py", + "sha256": "a4d2f8a5052895b7a18eb375ede381aed8575b02389392ccf56f5acd71e08ae8", + "language": "Python", + "lines": 475, + "truncated": false, + "block": 1, + "row": 9242 + }, + { + "path": "validation/benchmarks/src/run_model.py", + "sha256": "aa89dba7e6577f778ef904f113065891df8b976462877892393bf9c78fd944ae", + "language": "Python", + "lines": 507, + "truncated": false, + "block": 1, + "row": 9506 + }, + { + "path": "validation/benchmarks/src/stats.py", + "sha256": "83bdda7536148fc87773fb80a42b21a314990215fccc073997d4f3aa994b2edf", + "language": "Python", + "lines": 313, + "truncated": false, + "block": 1, + "row": 8326 + }, + { + "path": "validation/complex/sim.py", + "sha256": "1c78cbaab8e6f5bc203b5aa0d422361f6a0cf4a391fcff2311c40065e69eccb1", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 1, + "row": 6990 + }, + { + "path": "validation/condensed/analysis.ipynb", + "sha256": "9a9126bace669fee2973bbc20a1ae238b94edfc1acfe3eb19fd8a370946a83d0", + "language": "Jupyter", + "lines": 358, + "truncated": false, + "block": 1, + "row": 1950 + }, + { + "path": "validation/condensed/setup.py", + "sha256": "dd412814ff338d456a179a726c931387993ff5ec4d176e87129195c1481cfd8c", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 1, + "row": 6597 + }, + { + "path": "validation/condensed/sim.py", + "sha256": "113480855e855348abd13fda3c435b1d81c4c254ed3646a22a8e5b4873fb5398", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 1, + "row": 7710 + }, + { + "path": "validation/folded/sim.py", + "sha256": "1c78cbaab8e6f5bc203b5aa0d422361f6a0cf4a391fcff2311c40065e69eccb1", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 1, + "row": 6990 + }, + { + "path": "validation/idp/sim.py", + "sha256": "71239e74c19ab1d40836e025753c43c27dce1e94812018ddd84616de6075508c", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 1, + "row": 6992 + }, + { + "path": "validation/rbfe/notebooks/garnet_openfe_fep_plus.ipynb", + "sha256": "27b0da879304f3c66c89890c7e51879842505e54af117de1b0522e39d9aabf2c", + "language": "Jupyter", + "lines": 954, + "truncated": false, + "block": 1, + "row": 2046 + }, + { + "path": "validation/rbfe/scripts/plan_rbfe_network.py", + "sha256": "16c1082d1bb7ad032a8f569e45c25ad5d836b9c148dc8e36f2210ed50436132d", + "language": "Python", + "lines": 342, + "truncated": false, + "block": 1, + "row": 8847 + }, + { + "path": "validation/rbfe/scripts/write_xml_and_pdb.py", + "sha256": "6dfc779c4d7ffd47ba0cbd98c5ed1182a0580649f73aee1dabf9ca5ebffdd7d8", + "language": "Python", + "lines": 158, + "truncated": false, + "block": 1, + "row": 7669 + } + ] +} \ No newline at end of file diff --git a/manifests/52/zenodo__20933397.json b/manifests/52/zenodo__20933397.json new file mode 100644 index 0000000000000000000000000000000000000000..39e9c5556c9979009f05a9b7c8036511ed9ba376 --- /dev/null +++ b/manifests/52/zenodo__20933397.json @@ -0,0 +1,84 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:20933397", + "url": "https://doi.org/10.5281/zenodo.20933397", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license file LICENCE", + "redistribution": "yes", + "files": [ + { + "path": "Astrocyte_MFA_Barium_R.R", + "sha256": "fc87e55a0ec66f8f1743ea8a3184cd397e97c48b73fd2a409e6a0ec43fab8a5d", + "language": "R", + "lines": 516, + "truncated": false, + "block": 1, + "row": 10522 + }, + { + "path": "Coupling_R.R", + "sha256": "4588da72a5a9623dddbef19723419db73b2df4d942823dce613dfa14a511272a", + "language": "R", + "lines": 294, + "truncated": false, + "block": 1, + "row": 10386 + }, + { + "path": "Immunohistochemistry_R.R", + "sha256": "3b536bbdd4bbc9af22ef2470351b12d8959703309a2a91115cfbc1e1564b927f", + "language": "R", + "lines": 358, + "truncated": false, + "block": 1, + "row": 10471 + }, + { + "path": "K_dynamics_10Hz30s_R.R", + "sha256": "a1efad8f8b80a794b7e21965061cb1a5ba1de33eb5e39a9b1e94eb22534c4aaf", + "language": "R", + "lines": 416, + "truncated": false, + "block": 1, + "row": 10490 + }, + { + "path": "LICENCE", + "sha256": "9e5f1b3c610b9c2da5c313bf81d577a7d1acec686bdb0384edefa6df0f90cd94", + "language": "License", + "lines": 395, + "truncated": false, + "block": 1, + "row": 2223 + }, + { + "path": "README.md", + "sha256": "827f4304258fd84aa83e202a39a80fc73c333eb66b5e546ee9e1e8fb4bc465ff", + "language": "Text", + "lines": 108, + "truncated": false, + "block": 1, + "row": 11933 + }, + { + "path": "Rise_time_R.R", + "sha256": "477e0b8440e8f5ba5b06c51dae50335ed866122708504a632ec0de215a69c6f7", + "language": "R", + "lines": 272, + "truncated": false, + "block": 1, + "row": 10385 + }, + { + "path": "Undershoot_analysis_R.R", + "sha256": "5b7f65f27b675b76e3f769bb83a54b524982208d7f5b5e1861eeb3ee9d732842", + "language": "R", + "lines": 283, + "truncated": false, + "block": 1, + "row": 10384 + } + ] +} \ No newline at end of file diff --git a/manifests/53/github.com__grussmayerlab__blinkingsimulator.json b/manifests/53/github.com__grussmayerlab__blinkingsimulator.json new file mode 100644 index 0000000000000000000000000000000000000000..51b87d832fae8b54d2dcfadc62ec6f473a924a41 --- /dev/null +++ b/manifests/53/github.com__grussmayerlab__blinkingsimulator.json @@ -0,0 +1,336 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/grussmayerlab/blinkingsimulator", + "url": "https://github.com/GrussmayerLab/BlinkingSimulator", + "host": "github.com", + "commit": "2d3f38e9741c8544514a7e4d04dbea4894f61a03", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Experiments/create_DNA_origami.m", + "sha256": "e9d1e69bb1374138dfe0528e95076954101073b582537dda181ca5ccec865801", + "language": "MATLAB", + "lines": 101, + "truncated": false, + "block": 2, + "row": 1433 + }, + { + "path": "LICENSE", + "sha256": "e57f1c320b8cf8798a7d2ff83a6f9e06a33a03585f6e065fea97f1d86db84052", + "language": "License", + "lines": 675, + "truncated": false, + "block": 1, + "row": 2236 + }, + { + "path": "README.md", + "sha256": "4aa0c6e29f6a2adcbf18b7d566909bdcc1f382b88b882d3e4668aca330b330ff", + "language": "Text", + "lines": 18, + "truncated": false, + "block": 2, + "row": 2593 + }, + { + "path": "Settings/BaseSettings_DNAorigami.m", + "sha256": "cb34ff35a5f871680c57e82af78e4863ef2f9196628a816e085721f775f67453", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 2, + "row": 1401 + }, + { + "path": "Settings/BaseSettings_MISRGRU.m", + "sha256": "9e6662ae7497a8a4b7e357b94010cd6f09bc38d0076580dca678857c03f6fd83", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 2, + "row": 1399 + }, + { + "path": "Settings/randomly_distribute_centerpoints.m", + "sha256": "8759dcb088b0ea9800089b42464a152581a94f508e5ca66bb1d453acd10337e8", + "language": "MATLAB", + "lines": 44, + "truncated": false, + "block": 2, + "row": 1301 + }, + { + "path": "Utils/GroundTruth/gtGen_movie.m", + "sha256": "17d05e083c1b9bdafa29bbdbfa595e3338dcd1d7d48e07df86e251c892a593f7", + "language": "MATLAB", + "lines": 131, + "truncated": false, + "block": 2, + "row": 1472 + }, + { + "path": "Utils/GroundTruth/gtGen_v2.m", + "sha256": "16e21260aa55287ce2aaae19ce88230d7fd42bc80f81f11626f1c3dbc70b1f9c", + "language": "MATLAB", + "lines": 117, + "truncated": false, + "block": 2, + "row": 1430 + }, + { + "path": "Utils/GroundTruth/gtGen_v4.m", + "sha256": "8992216521e21944d15c824691a582baeb659d947e72753c6284c415f12e15e0", + "language": "MATLAB", + "lines": 115, + "truncated": false, + "block": 2, + "row": 1432 + }, + { + "path": "Utils/NCS/SRhist.m", + "sha256": "c67a1a35e274307d785fefd17a9bf0246769554d7fcc6134697b42847e520b79", + "language": "MATLAB", + "lines": 58, + "truncated": false, + "block": 2, + "row": 1278 + }, + { + "path": "Utils/PatternGenerator/dataGen.m", + "sha256": "8da23b42390c91e636a732cab7ec21bd8113cf092a8363a7da4ddf9abc27e942", + "language": "MATLAB", + "lines": 557, + "truncated": false, + "block": 2, + "row": 1553 + }, + { + "path": "Utils/PatternGenerator/generate_polygon.m", + "sha256": "69c482ad4f4788e33f7cd54afbc4d29e6b8f4cb7edef479788ff7d4d54f97172", + "language": "MATLAB", + "lines": 69, + "truncated": false, + "block": 2, + "row": 1347 + }, + { + "path": "Utils/PatternGenerator/microtubules.m", + "sha256": "5d14d20c891e71672dc1544de219263358551d109f5f6bd0e8762998e4ddd914", + "language": "MATLAB", + "lines": 191, + "truncated": false, + "block": 2, + "row": 1478 + }, + { + "path": "Utils/PatternGenerator/mithocondria_dblink.m", + "sha256": "70d3659f5c465f12b4aad62861562ed173494dcf636acbc8a9c63fa78452c4f5", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 2, + "row": 1274 + }, + { + "path": "Utils/PatternGenerator/mitochondria.m", + "sha256": "54cb8f9a54169c858c4999930c03f12360af330ebebbfab8016fffddc22e36f2", + "language": "MATLAB", + "lines": 183, + "truncated": false, + "block": 2, + "row": 1497 + }, + { + "path": "Utils/bgGen_Cam_v2.m", + "sha256": "761722affe71882bda618c2bacd34bd4819ec66239efc786a25e395f38cc2741", + "language": "MATLAB", + "lines": 211, + "truncated": false, + "block": 2, + "row": 1517 + }, + { + "path": "Utils/blinkPSF.m", + "sha256": "4cdd5112e96777ea74359e54e1fb6feb310b2ebb37b868e005f3d61553676b98", + "language": "MATLAB", + "lines": 140, + "truncated": false, + "block": 2, + "row": 1450 + }, + { + "path": "Utils/brightness.m", + "sha256": "674897c9e468eda3c8ba450bba95fad405c2bb05f905a9dcf10b056742139b6b", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 2, + "row": 1405 + }, + { + "path": "Utils/helpers/data_normalize.m", + "sha256": "815e7f14742af36666932f8912ecd98b4c43e85c4eea258d432e77722f2e40d0", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 2, + "row": 1208 + }, + { + "path": "Utils/helpers/downSample.m", + "sha256": "89a3142827a49e6cb18284fcfdbd1da3f46d90c5163cf90d1e7ae75887a36b3f", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 2, + "row": 1193 + }, + { + "path": "Utils/helpers/fourierInterpolation.m", + "sha256": "1b97c0a98bf6d1d312bb3a501e12509fed33236500a9bf5d231e43087cd11021", + "language": "MATLAB", + "lines": 445, + "truncated": false, + "block": 2, + "row": 1549 + }, + { + "path": "Utils/helpers/generate_psf.m", + "sha256": "e2ad72b9d9cac19bd9ab556aa8b6e6c2ab6b14afe371206a74558dac43d2410d", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 2, + "row": 1205 + }, + { + "path": "Utils/helpers/generate_psf_imdecor.m", + "sha256": "5e1ef4c5c933b5ab2f951d46443a404f387d357af0212bbd84f6f12a3c6393b7", + "language": "MATLAB", + "lines": 10, + "truncated": false, + "block": 2, + "row": 1190 + }, + { + "path": "Utils/io/imwritestack.m", + "sha256": "2f8c1fc6cbe852ff384f7447bc0e223133c30128cb06defee06e1bc7f15eeeae", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 2, + "row": 1197 + }, + { + "path": "Utils/io/loadData.m", + "sha256": "557320a0d21507b9e5cd3d55a63b28f23968bae3ec66e2fca43534b2034bda30", + "language": "MATLAB", + "lines": 60, + "truncated": false, + "block": 2, + "row": 1328 + }, + { + "path": "Utils/multiPatternExp.m", + "sha256": "23f5e3fa789ae24673ba31b4ffee68f54aac2788c287ba6c3a42b3f72451f871", + "language": "MATLAB", + "lines": 141, + "truncated": false, + "block": 2, + "row": 1467 + }, + { + "path": "c-tiff-main/c-tiff-main/parallelReadTiff/cSrc/main.c", + "sha256": "fbdcb7944fbcca2c367e9faf017c4b607f76fa5a1fac6b488c796d18e72120e7", + "language": "C", + "lines": 13, + "truncated": false, + "block": 2, + "row": 0 + }, + { + "path": "c-tiff-main/c-tiff-main/parallelReadTiff/cSrc/parallelReadTiff.c", + "sha256": "a97ae988ac3c42c19031fd0b0d8e0a883604f888604db6ce0feded025d511995", + "language": "C", + "lines": 326, + "truncated": false, + "block": 2, + "row": 37 + }, + { + "path": "c-tiff-main/c-tiff-main/parallelReadTiff/cSrc/parallelReadTiff.h", + "sha256": "9fc88524df98ef5de3c30288e74103fae9e55f2cd689603eca7a106fc670f626", + "language": "C/C++", + "lines": 16, + "truncated": false, + "block": 2, + "row": 550 + }, + { + "path": "c-tiff-main/c-tiff-main/parallelReadTiff/getImageSizeMex/getImageSize_mex.c", + "sha256": "32cdca574b498a6551e48063fdc12d8a60335c60b8343161d2ea093cfb0f2e16", + "language": "C", + "lines": 126, + "truncated": false, + "block": 2, + "row": 12 + }, + { + "path": "c-tiff-main/c-tiff-main/parallelReadTiff/parallelReadTiffMex/parallelReadTiff.c", + "sha256": "7ecfe9054c7c94fee92fab0986a682948750ee7c226f5cd17333fe33518565fd", + "language": "C", + "lines": 762, + "truncated": false, + "block": 2, + "row": 59 + }, + { + "path": "c-tiff-main/c-tiff-main/parallelWriteTiff/parallelWriteTiffMex/lzwEncode.c", + "sha256": "411744c3b993bd067df0f7276a7fa0ffa1276f505e20f0c474fd56bd2695aee8", + "language": "C", + "lines": 326, + "truncated": false, + "block": 2, + "row": 34 + }, + { + "path": "c-tiff-main/c-tiff-main/parallelWriteTiff/parallelWriteTiffMex/lzwEncode.h", + "sha256": "13795f662197e5f7dcd29318d3be5aebcd99560325c450db9484832f95312eb8", + "language": "C/C++", + "lines": 6, + "truncated": false, + "block": 2, + "row": 493 + }, + { + "path": "c-tiff-main/c-tiff-main/parallelWriteTiff/parallelWriteTiffMex/parallelWriteTiff.c", + "sha256": "b40c59290e0a01e78b016c85c71cc8e28e630bdff897bf986d70ecc2e13a629c", + "language": "C", + "lines": 500, + "truncated": false, + "block": 2, + "row": 45 + }, + { + "path": "create_TrainingSet.m", + "sha256": "166587219e7706f70ec7f42c4d9630d048197baa9100ceb53d0d64ff655f283f", + "language": "MATLAB", + "lines": 99, + "truncated": false, + "block": 2, + "row": 1429 + }, + { + "path": "sCMOS/Camera_Calibration.m", + "sha256": "9c39ea336c4286d269333cd35a2b2c2f56b6878edc46ca5807a307bc1b537a25", + "language": "MATLAB", + "lines": 122, + "truncated": false, + "block": 2, + "row": 1410 + } + ] +} \ No newline at end of file diff --git a/manifests/54/github.com__yaromirko__biostatistics-wd.json b/manifests/54/github.com__yaromirko__biostatistics-wd.json new file mode 100644 index 0000000000000000000000000000000000000000..630714ac1549cb7a121b6ebe215841f8f69f7dd1 --- /dev/null +++ b/manifests/54/github.com__yaromirko__biostatistics-wd.json @@ -0,0 +1,237 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/yaromirko/biostatistics-wd", + "url": "https://github.com/YaromirKo/biostatistics-wd", + "host": "github.com", + "commit": "e5adf0d53cbc24f9a6c30099b0874064dcdb87ea", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "1_task_mpa_pas_pa/report_MPA_wd_vs_control.Rmd", + "sha256": "edef6973c41516d15405e0f3e2a4e7b362373ed00405c93c67e06cbba8b3eb82", + "language": "R", + "lines": 433, + "truncated": false, + "block": 1, + "row": 10479 + }, + { + "path": "1_task_mpa_pas_pa/report_PAS_wd_control.Rmd", + "sha256": "a11e0589e5159839f127a23f122e194a607d3edb3f617b216640f945fb4ee965", + "language": "R", + "lines": 417, + "truncated": false, + "block": 1, + "row": 10452 + }, + { + "path": "1_task_mpa_pas_pa/report_Pa_wd_control.Rmd", + "sha256": "6c502311ab759cf8d474b5ea4095ffb89cc0cf44f167a9785012278de778427f", + "language": "R", + "lines": 413, + "truncated": false, + "block": 1, + "row": 10423 + }, + { + "path": "2_task_mpa_pas/report_MPA_wd_ssr_conivaptan.Rmd", + "sha256": "73640795b6a62fa21e79fbdf0ec6f5d5d736972efa90628e00951fcc79fd9ad3", + "language": "R", + "lines": 434, + "truncated": false, + "block": 1, + "row": 10477 + }, + { + "path": "2_task_mpa_pas/report_MPA_wd_ssr_conivaptan_control_2_3.Rmd", + "sha256": "3b143ddde1e18001a444a83a6cda51f99b03d4f8137492f667c1e3f43c8cba62", + "language": "R", + "lines": 434, + "truncated": false, + "block": 1, + "row": 10483 + }, + { + "path": "2_task_mpa_pas/report_PAS_wd_ssr_conivaptan.Rmd", + "sha256": "40355e53aa62a0c7a57d2c42a4bee068148e7042cf4016c3f817215d44008e76", + "language": "R", + "lines": 436, + "truncated": false, + "block": 1, + "row": 10478 + }, + { + "path": "2_task_mpa_pas/report_PAS_wd_ssr_conivaptan_control_2_3.Rmd", + "sha256": "7ea24f4d11957a57fb7a0cebfd666f1e3ccaf2e462b018a329bc0836089cf20e", + "language": "R", + "lines": 436, + "truncated": false, + "block": 1, + "row": 10484 + }, + { + "path": "3_task_mpa_pas/report_MPA_wd_sp.Rmd", + "sha256": "48ec2caa1d9c539e1462ed974d0278b6bb6fa9bfcac534c5ca1dca0c4fb7b42f", + "language": "R", + "lines": 431, + "truncated": false, + "block": 1, + "row": 10457 + }, + { + "path": "3_task_mpa_pas/report_MPA_wd_sp_control_2_3.Rmd", + "sha256": "2ffca762fad07bb9357f42144d6bf532de1bbdebd433cbd1cbae1c0561c41fa3", + "language": "R", + "lines": 431, + "truncated": false, + "block": 1, + "row": 10474 + }, + { + "path": "3_task_mpa_pas/report_PAS_wd_sp.Rmd", + "sha256": "55f05c9ab5cd8ea05036f5e13d60bbe094e727b27173b9e0cedc115938759237", + "language": "R", + "lines": 433, + "truncated": false, + "block": 1, + "row": 10459 + }, + { + "path": "3_task_mpa_pas/report_PAS_wd_sp_control_2_3.Rmd", + "sha256": "e4d5d0d254b722a132ece26732e652116b3dee3faac1e632a1f2c2615f4f9f69", + "language": "R", + "lines": 434, + "truncated": false, + "block": 1, + "row": 10476 + }, + { + "path": "BayesianPValue.R", + "sha256": "30f35eac5c54eb70507e596ea1e4ad240cf991e810b6d57b114789b0c4548a41", + "language": "R", + "lines": 149, + "truncated": false, + "block": 1, + "row": 10278 + }, + { + "path": "LICENSE", + "sha256": "3b7900ad72a749ee23f1125acd2f7340860b44c86ce356c83f96edc36f3dcb42", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2094 + }, + { + "path": "README.md", + "sha256": "39be8950b2745908c700e7c5c247071520d15eebabacbf4823b9a6b9b6be605d", + "language": "Text", + "lines": 187, + "truncated": false, + "block": 1, + "row": 11953 + }, + { + "path": "force_measurement/report_SF_preprocess.Rmd", + "sha256": "cd6ed3a9a0f3006d4111ab7d182d876dc3a289e1b81278456f8eb6954ef76157", + "language": "R", + "lines": 466, + "truncated": false, + "block": 1, + "row": 10468 + }, + { + "path": "force_measurement/task_1/report_SF_AI.Rmd", + "sha256": "946591e84e2dbeeb63291b7ea2b0f2d1827569c14439d1cfb8c9acb98dbd164a", + "language": "R", + "lines": 328, + "truncated": false, + "block": 1, + "row": 10400 + }, + { + "path": "force_measurement/task_1/report_SF_dw.Rmd", + "sha256": "f8861a49a55335b1bfbc80c1f96ff0d035543b8e08b5bd9ec98e7f3e6de34f37", + "language": "R", + "lines": 349, + "truncated": false, + "block": 1, + "row": 10432 + }, + { + "path": "force_measurement/task_2/report_SF_AI.Rmd", + "sha256": "a05a8697b095fa74243ffee1e41ebfdc8ddf8b59cc3b5cd1d34044b6f6e4eecd", + "language": "R", + "lines": 327, + "truncated": false, + "block": 1, + "row": 10407 + }, + { + "path": "force_measurement/task_2/report_SF_dw.Rmd", + "sha256": "044fe24d3c0e9ab19e6caad439d663fcd18470e598db859cfeb417aef0b342fb", + "language": "R", + "lines": 346, + "truncated": false, + "block": 1, + "row": 10433 + }, + { + "path": "force_measurement/task_2_2/report_SF_AI.Rmd", + "sha256": "4f35da4e209f4f642a8b87158eb2fdb1f65315b43b3f7593dcd00a9f6d13852e", + "language": "R", + "lines": 335, + "truncated": false, + "block": 1, + "row": 10411 + }, + { + "path": "force_measurement/task_2_2/report_SF_dw.Rmd", + "sha256": "8cddc52ea192905bf04c452d1932c63f2b9c0c561cfb4176a9f2286bff05bd68", + "language": "R", + "lines": 357, + "truncated": false, + "block": 1, + "row": 10440 + }, + { + "path": "force_measurement/task_3/report_SF_AI.Rmd", + "sha256": "071fd2df84ac24d00c1e0d613044e26a32942e11bba94adff3f2ab584b64b811", + "language": "R", + "lines": 336, + "truncated": false, + "block": 1, + "row": 10405 + }, + { + "path": "force_measurement/task_3/report_SF_dw.Rmd", + "sha256": "7bf26c90aadd2154024dbe0b848c1e5b5b1e09275ca1180085803223befca75f", + "language": "R", + "lines": 355, + "truncated": false, + "block": 1, + "row": 10436 + }, + { + "path": "force_measurement/task_3_2/report_SF_AI.Rmd", + "sha256": "23b7aac2d57ae8e0a229baae030310617ce03522af976196cc8ed493e29efa7e", + "language": "R", + "lines": 336, + "truncated": false, + "block": 1, + "row": 10408 + }, + { + "path": "force_measurement/task_3_2/report_SF_dw.Rmd", + "sha256": "285ef62bdd622ced895d7b8b773d636b7ed6640ccb2cbc4d3f94d6da30706fd1", + "language": "R", + "lines": 355, + "truncated": false, + "block": 1, + "row": 10438 + } + ] +} \ No newline at end of file diff --git a/manifests/54/zenodo__19120269.json b/manifests/54/zenodo__19120269.json new file mode 100644 index 0000000000000000000000000000000000000000..738e227b7bca662215e2498097e2ac0d0ebabe4c --- /dev/null +++ b/manifests/54/zenodo__19120269.json @@ -0,0 +1,21 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:19120269", + "url": "10.5281/zenodo.19120269", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "ReadMe.md", + "sha256": "7c1bd88d4a31de9f95172b89fd80db6750da5ec96df00ff6b1c2dd6e7741b675", + "language": "Text", + "lines": 70, + "truncated": false, + "block": 2, + "row": 2613 + } + ] +} \ No newline at end of file diff --git a/manifests/56/github.com__allenneuraldynamics__aind-ephys-job-dispatch.json b/manifests/56/github.com__allenneuraldynamics__aind-ephys-job-dispatch.json new file mode 100644 index 0000000000000000000000000000000000000000..4822ca8ad10dc5fc02b9587f6714c46a67c353c2 --- /dev/null +++ b/manifests/56/github.com__allenneuraldynamics__aind-ephys-job-dispatch.json @@ -0,0 +1,48 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/allenneuraldynamics/aind-ephys-job-dispatch", + "url": "https://github.com/AllenNeuralDynamics/aind-ephys-job-dispatch", + "host": "github.com", + "commit": "015114a2117b228fc2a97589d45d770e560ca886", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "d7609c858f47823b9d7cee46253bffc40e93fd55effa744aa249e97a603c65cb", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1139 + }, + { + "path": "README.md", + "sha256": "48b9f0ebdd2def9bd5587060503795817fd0bd451c4464517be5807d40223abc", + "language": "Text", + "lines": 59, + "truncated": false, + "block": 2, + "row": 2636 + }, + { + "path": "code/get_max_recording_duration_min.py", + "sha256": "9010f4b69462cdec55365411656865586009340052282193fb8c07deb1fb5878", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 2, + "row": 1662 + }, + { + "path": "code/run_capsule.py", + "sha256": "7c0ac07b386eec2a15e2a65879e83ec6a79e6efba561b13c89eb2fe4c3666ed9", + "language": "Python", + "lines": 832, + "truncated": false, + "block": 2, + "row": 2231 + } + ] +} \ No newline at end of file diff --git a/manifests/57/github.com__eroglu-lab__in-vitro-sholl.json b/manifests/57/github.com__eroglu-lab__in-vitro-sholl.json new file mode 100644 index 0000000000000000000000000000000000000000..9d136b48e30268d1490d428f138970ec3ec81883 --- /dev/null +++ b/manifests/57/github.com__eroglu-lab__in-vitro-sholl.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/eroglu-lab/in-vitro-sholl", + "url": "https://github.com/Eroglu-Lab/In-Vitro-Sholl", + "host": "github.com", + "commit": "7c358eca89be2501bab49419cc4fa0de9dc2c5f7", + "license": "MIT", + "license_confirmed_by": "license file license.txt", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "a0104b04c43c2a0ce60c3f0fd3055da75388b028a2e973e12ec99af4abbec5fb", + "language": "Text", + "lines": 46, + "truncated": false, + "block": 1, + "row": 11848 + }, + { + "path": "inVitro_sholl_analysis.r", + "sha256": "25e6627840c6985d710cbe36fb72231f1d93d4bbfff2d1ed83472bd3c54aadb3", + "language": "R", + "lines": 104, + "truncated": false, + "block": 1, + "row": 10213 + }, + { + "path": "license.txt", + "sha256": "b20b20ebfa4bc920fe7208248be9c4a30185969060c975848054011c198f4603", + "language": "License", + "lines": 23, + "truncated": false, + "block": 1, + "row": 2177 + } + ] +} \ No newline at end of file diff --git a/manifests/57/github.com__sotiraslab__csopnmf.json b/manifests/57/github.com__sotiraslab__csopnmf.json new file mode 100644 index 0000000000000000000000000000000000000000..0fa6b4c27d72bc1c90c998299a756618071fdab6 --- /dev/null +++ b/manifests/57/github.com__sotiraslab__csopnmf.json @@ -0,0 +1,93 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/sotiraslab/csopnmf", + "url": "https://github.com/sotiraslab/csopNMF", + "host": "github.com", + "commit": "7b404557b3c78761e9c67b96c2ed8da5e36ce44d", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "c71d239df91726fc519c6eb72d318ec65820627232b2f796219e87dcf35d0ab4", + "language": "License", + "lines": 201, + "truncated": false, + "block": 1, + "row": 2216 + }, + { + "path": "Python/csopnmf.py", + "sha256": "6b2503e148e9a801ecba48b2cbf4b005d177deafb8b93c09cacae1c3b382f65f", + "language": "Python", + "lines": 1469, + "truncated": false, + "block": 1, + "row": 9837 + }, + { + "path": "Python/initialize_nmf.py", + "sha256": "9d5f4e8a7489d0a9e998bedacb2bd3829366843e24456f13922283a2a4cd24fb", + "language": "Python", + "lines": 184, + "truncated": false, + "block": 1, + "row": 7824 + }, + { + "path": "Python/opnmf.py", + "sha256": "2e40e089722e3b442966390210a73c3a0aee7992804f49b459b8cc0c88b1509c", + "language": "Python", + "lines": 526, + "truncated": false, + "block": 1, + "row": 9488 + }, + { + "path": "Python/opnmf_update_rule.py", + "sha256": "0deb7189169eec5ff30bbf9e147f9b271dc5a14e0da38dde607cf2cbfe9c02c7", + "language": "Python", + "lines": 381, + "truncated": false, + "block": 1, + "row": 9309 + }, + { + "path": "Python/restart.py", + "sha256": "ed016a9a9ca35ee446176e9c9e6f724eb07d7c1f08296640ec5d6a6cfaa714d1", + "language": "Python", + "lines": 191, + "truncated": false, + "block": 1, + "row": 8270 + }, + { + "path": "Python/sopnmf.py", + "sha256": "2a3e690c937f7e9ae69e001f59a63fc497abb6966869900cbd1fa508bf06ccf8", + "language": "Python", + "lines": 905, + "truncated": false, + "block": 1, + "row": 9766 + }, + { + "path": "Python/utils.py", + "sha256": "d71e049bf929574afaa0bc33bec80988705315741c4b90fa0c2b9d985911b9ae", + "language": "Python", + "lines": 670, + "truncated": false, + "block": 1, + "row": 9536 + }, + { + "path": "README.md", + "sha256": "8c30bfcbf596349c281e138265bb03611973084a98e239fdece2d7501e2ce708", + "language": "Text", + "lines": 142, + "truncated": false, + "block": 1, + "row": 11976 + } + ] +} \ No newline at end of file diff --git a/manifests/5a/figshare__32257377.json b/manifests/5a/figshare__32257377.json new file mode 100644 index 0000000000000000000000000000000000000000..87e37a7e8bbc1f91b93f5fbe8889649df3c98a7a --- /dev/null +++ b/manifests/5a/figshare__32257377.json @@ -0,0 +1,21 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "figshare:32257377", + "url": "https://doi.org/10.6084/m9.figshare.32257377", + "host": "figshare.com", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "eye_cal.m", + "sha256": "c3ede85b78b5b678869770af7df90e44e7088852bab4c8433c508a027e2b6d6b", + "language": "MATLAB", + "lines": 712, + "truncated": false, + "block": 1, + "row": 4189 + } + ] +} \ No newline at end of file diff --git a/manifests/5a/github.com__filip-szczepankiewicz__resq.json b/manifests/5a/github.com__filip-szczepankiewicz__resq.json new file mode 100644 index 0000000000000000000000000000000000000000..4cff21c19c95f172b1881c10a6eac2b2169801be --- /dev/null +++ b/manifests/5a/github.com__filip-szczepankiewicz__resq.json @@ -0,0 +1,147 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/filip-szczepankiewicz/resq", + "url": "https://github.com/filip-szczepankiewicz/ResQ", + "host": "github.com", + "commit": "ce45c7450721c834f7917544d786821c0a2051e7", + "license": "BSD-3-Clause", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "f2db870730b4c19fa873a4f094f665d5b64b621da33ca80b48618c3e29d38859", + "language": "License", + "lines": 28, + "truncated": false, + "block": 1, + "row": 2197 + }, + { + "path": "README.md", + "sha256": "bd84d3140720a40a8dbfc62e1f6319c15bbe5488fff8d12bc59e2423868dcae9", + "language": "Text", + "lines": 47, + "truncated": false, + "block": 1, + "row": 11836 + }, + { + "path": "resQ_1d_data2fit.m", + "sha256": "e94dfbe85f2856a4e947ddd7e87ff909ddcfaf6eed229604a54e52e43edade11", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 1, + "row": 2608 + }, + { + "path": "resQ_1d_fit2data.m", + "sha256": "8d90430c84be294e77f0f158317faa850c278a958d6640463bb38a5fb4836506", + "language": "MATLAB", + "lines": 26, + "truncated": false, + "block": 1, + "row": 2582 + }, + { + "path": "resQ_1x6_to_shape.m", + "sha256": "ecfad66e664ed9f79412c4d0e826a020778024115882088121fa5003c844e836", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 1, + "row": 2517 + }, + { + "path": "resQ_4d_data2fit.m", + "sha256": "7816d0b64296e5f5a9d0cf8e55bed25376bf3e673e4ed9d71a8048d6c3f32010", + "language": "MATLAB", + "lines": 15, + "truncated": false, + "block": 1, + "row": 2424 + }, + { + "path": "resQ_4d_fit2param.m", + "sha256": "425f5df3682239926edf0e7824b055e4a02c8cc35dd4093835ae6365894a72db", + "language": "MATLAB", + "lines": 86, + "truncated": false, + "block": 1, + "row": 3227 + }, + { + "path": "resQ_check_xps.m", + "sha256": "ec29aa378132f8f81190277455f7bafb48bed08d88d5c28805f75ef34cc3339a", + "language": "MATLAB", + "lines": 14, + "truncated": false, + "block": 1, + "row": 2462 + }, + { + "path": "resQ_opt.m", + "sha256": "62936f10fe16013033917a9c833ff768a4e309a3bd7b07c0e543969503352922", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 1, + "row": 2797 + }, + { + "path": "resQ_pipe.m", + "sha256": "797e17e52a20f506c9abd5917127acab6f22f8cef020cfa72bd0ecdbb4db0928", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 1, + "row": 2638 + }, + { + "path": "resQ_plot.m", + "sha256": "0772d4b70df2a43c2573ef9be25995f5324e9da0dc6cfe69fd0c2773eb1d1dd1", + "language": "MATLAB", + "lines": 176, + "truncated": false, + "block": 1, + "row": 3481 + }, + { + "path": "resQ_unitSwap.m", + "sha256": "ddd93a9f00cc6ab7fcf07294dc40ace1baef11e74547fa04079186c68ec2a998", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 1, + "row": 2502 + }, + { + "path": "resQ_xps2paind.m", + "sha256": "f36e9cc7e3de682fac66bd697acb277185016aa9fb82672687d4f7402ccefca5", + "language": "MATLAB", + "lines": 16, + "truncated": false, + "block": 1, + "row": 2463 + }, + { + "path": "resQ_xps_example.m", + "sha256": "b672a1dc8bcd8480a7fbbc4033d324d2dd39733a18fc117a3d16da53bd61b076", + "language": "MATLAB", + "lines": 5, + "truncated": false, + "block": 1, + "row": 2288 + }, + { + "path": "test_resQ.m", + "sha256": "5b0e0facb2a11b2ac9c7dccc77d73ee22f4072c9238ad368afdae28732aa194e", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 1, + "row": 2422 + } + ] +} \ No newline at end of file diff --git a/manifests/5b/github.com__richzhang__perceptualsimilarity.json b/manifests/5b/github.com__richzhang__perceptualsimilarity.json new file mode 100644 index 0000000000000000000000000000000000000000..5ce79b21d7f1fb2623960ae7f9bfca7c95b4e997 --- /dev/null +++ b/manifests/5b/github.com__richzhang__perceptualsimilarity.json @@ -0,0 +1,282 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/richzhang/perceptualsimilarity", + "url": "https://github.com/richzhang/PerceptualSimilarity", + "host": "github.com", + "commit": "082bb24f84c091ea94de2867d34c4544f68e0963", + "license": "BSD-2-Clause", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "59d091d66b48f09a8a5107216f2007d9e775ffb4cc467a25733ec25f7c5c8fa1", + "language": "License", + "lines": 24, + "truncated": false, + "block": 1, + "row": 2191 + }, + { + "path": "README.md", + "sha256": "7d4c741dd55f4667997f10c70b7356d45a4703e514f2cfa33efebec858519421", + "language": "Text", + "lines": 187, + "truncated": false, + "block": 1, + "row": 11967 + }, + { + "path": "data/base_data_loader.py", + "sha256": "f7196f0e162ee66b9383d05aada4cb202d71e8d8b76441ff3e2060004921056d", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 1, + "row": 5138 + }, + { + "path": "data/custom_dataset_data_loader.py", + "sha256": "feb4e793ee284868405de165e7a44598f939f2d4738cb861569676fa14e4f8d5", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 6008 + }, + { + "path": "data/data_loader.py", + "sha256": "c9c0ca355342c39315214be3afa1081a0acf8f6d568c48b651b1ccbabd33550b", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 1, + "row": 5389 + }, + { + "path": "data/dataset/base_dataset.py", + "sha256": "643cf4743946d98a6e2f8426d7a691439f4a70de5f8be5a81fa00ce71a5dec49", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 1, + "row": 5173 + }, + { + "path": "data/dataset/jnd_dataset.py", + "sha256": "28c01cf5ac87ccd368cdce7c7a7665e6328db62e814d6c077ec30cf1da093585", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 1, + "row": 6173 + }, + { + "path": "data/dataset/twoafc_dataset.py", + "sha256": "09817e2ea5acada9fdc61dadcc753cd6a1fb100f76cb10bcc0bd8e40b69819ac", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 1, + "row": 6477 + }, + { + "path": "data/image_folder.py", + "sha256": "aec21edeb35166971d34e95e7f7841e14519b8216735e8656a642cf705280558", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 1, + "row": 6406 + }, + { + "path": "lpips/__init__.py", + "sha256": "eccfb23848beefe67bed3d0698e40c7e2f4ed43f7e92320e411681523a7a1776", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 1, + "row": 7158 + }, + { + "path": "lpips/lpips.py", + "sha256": "3eaeb96c0029b2d849745e6691ccb0d85361bed9cf9953b7ceaed8dc948a6d83", + "language": "Python", + "lines": 241, + "truncated": false, + "block": 1, + "row": 8513 + }, + { + "path": "lpips/pretrained_networks.py", + "sha256": "6a27f714c51796db466e86bebba6a617c1bfc4d566f3a1756497629c1248686e", + "language": "Python", + "lines": 180, + "truncated": false, + "block": 1, + "row": 7846 + }, + { + "path": "lpips/trainer.py", + "sha256": "c44726c274bd31ff20cc1491375a3dc930e61e5dc2660a63e863ce607ceac213", + "language": "Python", + "lines": 280, + "truncated": false, + "block": 1, + "row": 8684 + }, + { + "path": "lpips_1dir_allpairs.py", + "sha256": "5f201ea1c78a7e60873e998f384f47cfd6420ecb9897e16730e3046eb8c827bd", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 1, + "row": 6140 + }, + { + "path": "lpips_2dirs.py", + "sha256": "75ef1283b572e61a6918b5d6b799276c560a11652513411e9e431c3c304d15d3", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 1, + "row": 5826 + }, + { + "path": "lpips_2imgs.py", + "sha256": "475d4903d327df9f2e8bfc8d5198ae33ef65c7fe0363fb4a497b59f259d56cec", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 1, + "row": 5627 + }, + { + "path": "lpips_loss.py", + "sha256": "ea7aa0a3f03e045629cfbcbe17c17c9a1cff89add5746d22d5b173f1d23592c6", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 1, + "row": 6112 + }, + { + "path": "scripts/download_dataset.sh", + "sha256": "34945af63ee9aa1f0b5bb10a6acf9e73f99559d2c1ca001e4984305732ce4ad9", + "language": "Shell", + "lines": 25, + "truncated": false, + "block": 1, + "row": 11419 + }, + { + "path": "scripts/download_dataset_valonly.sh", + "sha256": "06f43e1999e007e43a5187f62006914eb54928c9230c6e45b674b8d69054c427", + "language": "Shell", + "lines": 17, + "truncated": false, + "block": 1, + "row": 11175 + }, + { + "path": "scripts/eval_valsets.sh", + "sha256": "b6b8c3d125f177ad5c9e56129c9a0cc93bb8aa248c53b449c023075baa1d5670", + "language": "Shell", + "lines": 3, + "truncated": false, + "block": 1, + "row": 11117 + }, + { + "path": "scripts/train_test_metric.sh", + "sha256": "117decbab85f6a2eb9d149468ada9605f31b9b2e3bd54cd01891c81a7db3c0ad", + "language": "Shell", + "lines": 7, + "truncated": false, + "block": 1, + "row": 11142 + }, + { + "path": "scripts/train_test_metric_scratch.sh", + "sha256": "8a994bbadd9d8fd57a6cd8ddbd74017711f31db11f89c52304c56da510815090", + "language": "Shell", + "lines": 8, + "truncated": false, + "block": 1, + "row": 11153 + }, + { + "path": "scripts/train_test_metric_tune.sh", + "sha256": "a9be0a6c6487150e060b3aada0d61cd3e304afa95f3d5a06fee5dae7bf58e043", + "language": "Shell", + "lines": 7, + "truncated": false, + "block": 1, + "row": 11146 + }, + { + "path": "setup.py", + "sha256": "7d92fca35455aee5a4ba0eedecb8aa0fe40beb1fe99868edff6daeff26387742", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 1, + "row": 5607 + }, + { + "path": "test_dataset_model.py", + "sha256": "3f6e6df3d1f28c11a507ade5f9e05d20e581e80035a371f4f08e11d3ca7f52dd", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 1, + "row": 6800 + }, + { + "path": "test_network.py", + "sha256": "c72086089d1568ea9e6194251ef3dd6b2c1be732d4e34ef87db9639038bc90e9", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 1, + "row": 5990 + }, + { + "path": "train.py", + "sha256": "f061877626f5fd58f4fca34ed26fd6b24765621fd8ccdb466c40002f2e5ee251", + "language": "Python", + "lines": 103, + "truncated": false, + "block": 1, + "row": 7578 + }, + { + "path": "util/html.py", + "sha256": "b2bb7d6794c5cb311852084df35f1885128399ea0323d0ef7cd700ef7dc55992", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 1, + "row": 6292 + }, + { + "path": "util/util.py", + "sha256": "19dd138a684ba2f05381c08845f04c2feaabdb89f0592f93ae9e573b72c1c7b0", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 1, + "row": 5974 + }, + { + "path": "util/visualizer.py", + "sha256": "1da0a4feb3a29577da3e7c8ca347171b7d8fdef330aa60f8980b525093a3dadc", + "language": "Python", + "lines": 215, + "truncated": false, + "block": 1, + "row": 8276 + } + ] +} \ No newline at end of file diff --git a/manifests/5b/github.com__tomdonoghue__aperiodicclinical.json b/manifests/5b/github.com__tomdonoghue__aperiodicclinical.json new file mode 100644 index 0000000000000000000000000000000000000000..f6517fe3942cdcd85e28f59f48b9ed0ab8f5d661 --- /dev/null +++ b/manifests/5b/github.com__tomdonoghue__aperiodicclinical.json @@ -0,0 +1,111 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/tomdonoghue/aperiodicclinical", + "url": "https://github.com/TomDonoghue/AperiodicClinical", + "host": "github.com", + "commit": "e5aa0378e7dbd0f9853d699218b4a4c7b53ca7b9", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "ce2aec29c7043d7c3ed5d530c9ed744a90923f8fb5af1653a87a2571f846b5d7", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2141 + }, + { + "path": "README.md", + "sha256": "d940230b8f099a0c68ebd343fef7341c5cf6d37f1657693a3339d175ee6f0251", + "language": "Text", + "lines": 52, + "truncated": false, + "block": 1, + "row": 11853 + }, + { + "path": "notebooks/01-SimulationExamples.ipynb", + "sha256": "6fe2d481236afda3ad57848a76adef49c446029f5d22971b5f65620414db24de", + "language": "Jupyter", + "lines": 212, + "truncated": false, + "block": 1, + "row": 1822 + }, + { + "path": "notebooks/02-LiteratureCounts.ipynb", + "sha256": "c4524c66319d181ab561f087d9dd23628b8e039f7ae47c8e22fc2e8fd8e46f66", + "language": "Jupyter", + "lines": 136, + "truncated": false, + "block": 1, + "row": 1722 + }, + { + "path": "notebooks/03-LiteratureSearches.ipynb", + "sha256": "0053384965ee8a3928e6156fee3f1a82e70148d47abb4b03fba6d1deb0104fac", + "language": "Jupyter", + "lines": 161, + "truncated": false, + "block": 1, + "row": 1748 + }, + { + "path": "notebooks/04-LiteratureAnalyses.ipynb", + "sha256": "3bde95fcae83f935642b897f22a7530fa87838960abdb46b3c6d53bc919bb3be", + "language": "Jupyter", + "lines": 420, + "truncated": false, + "block": 1, + "row": 1914 + }, + { + "path": "notebooks/05-LiteratureAnalyses-FreqRanges.ipynb", + "sha256": "ab2db9e83b5bce1b51c7a16a55bd2e9d30735e0571a2ce6b46b6de88850a3698", + "language": "Jupyter", + "lines": 177, + "truncated": false, + "block": 1, + "row": 1766 + }, + { + "path": "notebooks/06-LiteratureAnalyses-Time.ipynb", + "sha256": "f220cbfe30c5620a12a0e3b6c84f18ccb166cc889596c6fe4e4304af36873e89", + "language": "Jupyter", + "lines": 240, + "truncated": false, + "block": 1, + "row": 1851 + }, + { + "path": "notebooks/local/plts.py", + "sha256": "b9d823bc66a55bd358cb4ef92804b765454561e540ff004a4c0756db73d97198", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 1, + "row": 6656 + }, + { + "path": "notebooks/local/terms.py", + "sha256": "7a52631893f0ad3291c8cf742886002a4a0bc9c10b4056fcd01ea94187db56bb", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 1, + "row": 6340 + }, + { + "path": "notebooks/local/utils.py", + "sha256": "aada734f8530caddf337d3624c279a007d26eb28e3160d1d1bb223816659fc51", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 1, + "row": 7075 + } + ] +} \ No newline at end of file diff --git a/manifests/5c/zenodo__21651635.json b/manifests/5c/zenodo__21651635.json new file mode 100644 index 0000000000000000000000000000000000000000..88a77ca47d6e28a447da497ea906e9318a063b37 --- /dev/null +++ b/manifests/5c/zenodo__21651635.json @@ -0,0 +1,255 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:21651635", + "url": "10.5281/zenodo.21651635", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "Fig1_baseline.ipynb", + "sha256": "ffecd6193d6c1d9bfa3c4462004aa02c4c6099dd51c0f49ad318b5ab9e5d0a28", + "language": "Jupyter", + "lines": 92, + "truncated": false, + "block": 1, + "row": 1741 + }, + { + "path": "Fig1_meca.ipynb", + "sha256": "7a21b764eb308bb1a452a73565a3364a97259cb1f27e7b9f5f54d3e72d169f9d", + "language": "Jupyter", + "lines": 74, + "truncated": false, + "block": 1, + "row": 1726 + }, + { + "path": "Fig1_traces.ipynb", + "sha256": "b981c40060775699439b34168d0afadb24edb38e0ebee92dab4bad26b3cbaa4d", + "language": "Jupyter", + "lines": 144, + "truncated": false, + "block": 1, + "row": 1798 + }, + { + "path": "Fig2_baseline.ipynb", + "sha256": "b598da32e21b9c39af0550f485369d5be6e8c649498d2ddfb5967df1409c82e0", + "language": "Jupyter", + "lines": 125, + "truncated": false, + "block": 1, + "row": 1767 + }, + { + "path": "Fig2_meca.ipynb", + "sha256": "12cb54887c125912c3021c876ca6192e7d2de39dc9113394313e0e1e5cccccae", + "language": "Jupyter", + "lines": 133, + "truncated": false, + "block": 1, + "row": 1771 + }, + { + "path": "Fig2_traces.ipynb", + "sha256": "ec369d0cf7f99e1b093e40524693706c14765f556ce917d954783478560e80b1", + "language": "Jupyter", + "lines": 152, + "truncated": false, + "block": 1, + "row": 1808 + }, + { + "path": "Fig3_barPlots.ipynb", + "sha256": "33a2f9924c5449a8aa5b236f598611d120ea47cb7024796ff4d187455895b659", + "language": "Jupyter", + "lines": 212, + "truncated": false, + "block": 1, + "row": 1894 + }, + { + "path": "Fig4_population.ipynb", + "sha256": "1d23fbee600c63e573429b36d0682c1c4d6d6541e631c74a2a066dd41dcfc4f7", + "language": "Jupyter", + "lines": 144, + "truncated": false, + "block": 1, + "row": 1860 + }, + { + "path": "Fig4_traces.ipynb", + "sha256": "e927059410e0f7303d82697e6053e6194bac26e0838822e4e3bfd8baaf80b6ba", + "language": "Jupyter", + "lines": 113, + "truncated": false, + "block": 1, + "row": 1777 + }, + { + "path": "Fig5_population.ipynb", + "sha256": "b75da228474f6f1d1fcfcd1a5ebeea98f424d3bc2f5850c9e02337f47d2cc3b6", + "language": "Jupyter", + "lines": 189, + "truncated": false, + "block": 1, + "row": 1904 + }, + { + "path": "Fig5_traces.ipynb", + "sha256": "51d94001f68c557374f2ee54da2c3ac80d5d0970daaf3c8e11f89a958bddd7e5", + "language": "Jupyter", + "lines": 195, + "truncated": false, + "block": 1, + "row": 1820 + }, + { + "path": "Fig6_traces_population.ipynb", + "sha256": "2e1cc49c17ea16ec5473d368db31d0a1fc1b13b20160c32f2c3ecd39856fb6be", + "language": "Jupyter", + "lines": 103, + "truncated": false, + "block": 1, + "row": 1755 + }, + { + "path": "Fig7_population.ipynb", + "sha256": "91f625c09668103b0ce6d829cd2710b1d70dd380483c92b3ed8fe9e902b803bd", + "language": "Jupyter", + "lines": 121, + "truncated": false, + "block": 1, + "row": 1776 + }, + { + "path": "Fig7_traces.ipynb", + "sha256": "ca163ed15e0e2dff1d7572f04cd02c062660ccc1f0f5d99bd0cc4517dac0437c", + "language": "Jupyter", + "lines": 137, + "truncated": false, + "block": 1, + "row": 1853 + }, + { + "path": "Fig8_baseline.ipynb", + "sha256": "fb069a57c8722d575fa76e052eb77dad3150886e05d85cdbf4c0a4a9dcadb609", + "language": "Jupyter", + "lines": 70, + "truncated": false, + "block": 1, + "row": 1718 + }, + { + "path": "Fig8_meca.ipynb", + "sha256": "fe08609fac28698cd1bf210ef8eb88d57c36f71f955253a10a0452c02efedf2c", + "language": "Jupyter", + "lines": 88, + "truncated": false, + "block": 1, + "row": 1730 + }, + { + "path": "Fig8_traces.ipynb", + "sha256": "f7beb6baeebcdecac76fd9b73fce6c64144de2f58f096f43e384d63e53e7f3b7", + "language": "Jupyter", + "lines": 81, + "truncated": false, + "block": 1, + "row": 1756 + }, + { + "path": "SuppFig10_DLS.ipynb", + "sha256": "b52cb63edeea8b73e01854b109589276ab31d89513a8aa6625973ba73a5c680a", + "language": "Jupyter", + "lines": 305, + "truncated": false, + "block": 1, + "row": 1965 + }, + { + "path": "SuppFig1_saline_meca.ipynb", + "sha256": "04bdb971d124244da5fd8dfae8808e26dfe626158ce57ebbbcaa5ffb61a41dd1", + "language": "Jupyter", + "lines": 113, + "truncated": false, + "block": 1, + "row": 1759 + }, + { + "path": "SuppFig2_traces.ipynb", + "sha256": "e380b9604bc088fef807199946c15f482b6e233ff111399a0d9c28b8da34c3a0", + "language": "Jupyter", + "lines": 501, + "truncated": false, + "block": 1, + "row": 1973 + }, + { + "path": "SuppFig3_reward.ipynb", + "sha256": "635c20d5b383ff65ce8d0259e60cf6264e71e7addc902ff815a5a1052b4a74e8", + "language": "Jupyter", + "lines": 205, + "truncated": false, + "block": 1, + "row": 1856 + }, + { + "path": "SuppFig4_tone.ipynb", + "sha256": "604e312ad60083931bfb3583eb74e523a2f51a4a76388eb1321f4a324f6885f3", + "language": "Jupyter", + "lines": 298, + "truncated": false, + "block": 1, + "row": 1906 + }, + { + "path": "SuppFig5_rabies.ipynb", + "sha256": "e1a3f25b9a1cf00be48fde8208873757193c05d82b40acda5ef678740b19fe1a", + "language": "Jupyter", + "lines": 136, + "truncated": false, + "block": 1, + "row": 1836 + }, + { + "path": "SuppFig6_ephys.ipynb", + "sha256": "3c1f8ed5203390e19f4321979239ae2eb0088ed12b309e3db6392c434ca46420", + "language": "Jupyter", + "lines": 172, + "truncated": false, + "block": 1, + "row": 1864 + }, + { + "path": "SuppFig7_SSp.ipynb", + "sha256": "98cd81bf723a4b4d97256756faa421498104c15518b3547b2a9ee7aeb1bb885f", + "language": "Jupyter", + "lines": 209, + "truncated": false, + "block": 1, + "row": 1889 + }, + { + "path": "SuppFig8_traces.ipynb", + "sha256": "a7a70be4fa87a141a63164388b53e57bbe915401084ec80423d8d1a6963b34f7", + "language": "Jupyter", + "lines": 580, + "truncated": false, + "block": 1, + "row": 2025 + }, + { + "path": "SuppFig9_saline_meca.ipynb", + "sha256": "c3263b0811aad3325f970621cdfea29e1385a2c852dcd96cec37e00bf9da2ff1", + "language": "Jupyter", + "lines": 203, + "truncated": false, + "block": 1, + "row": 1871 + } + ] +} \ No newline at end of file diff --git a/manifests/5d/github.com__veronicamp__defective-ev-mediated-transport-of-shh-alters-neural-fate-specification-in-epm1-epilepsy.json b/manifests/5d/github.com__veronicamp__defective-ev-mediated-transport-of-shh-alters-neural-fate-specification-in-epm1-epilepsy.json new file mode 100644 index 0000000000000000000000000000000000000000..fc9a8c6e851597dd75a92e315a796d4d843a2865 --- /dev/null +++ b/manifests/5d/github.com__veronicamp__defective-ev-mediated-transport-of-shh-alters-neural-fate-specification-in-epm1-epilepsy.json @@ -0,0 +1,111 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/veronicamp/defective-ev-mediated-transport-of-shh-alters-neural-fate-specification-in-epm1-epilepsy", + "url": "https://github.com/VeronicaMP/Defective-EV-Mediated-Transport-of-SHH-Alters-Neural-Fate-Specification-in-EPM1-epilepsy", + "host": "github.com", + "commit": "4c22f863f350fa0a1844f76f2d9d723f46a6c011", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "1_PCA_TPM.R", + "sha256": "4df115a96cde2c5e31677bee2e1c90873630626e1a539b098b5f6fa1ae3621c2", + "language": "R", + "lines": 182, + "truncated": false, + "block": 1, + "row": 10395 + }, + { + "path": "LICENSE", + "sha256": "58235aea3cbee763d687c8010510348a7fda1748b77b883f5bab4aabe765b258", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2159 + }, + { + "path": "README.md", + "sha256": "d1f01ab42c33cbd22dc095a3cba588bf84115b7fe4e50e17ea5350746f7e76ca", + "language": "Text", + "lines": 35, + "truncated": false, + "block": 1, + "row": 11824 + }, + { + "path": "vCO_01_quality_control.ipynb", + "sha256": "48a87b202c61307b9d97f514d632736d432193920f4bf9d28924b34fbc28b58d", + "language": "Jupyter", + "lines": 266, + "truncated": false, + "block": 1, + "row": 1839 + }, + { + "path": "vCO_02_normalization.ipynb", + "sha256": "8d80a920a7520d506ea3f6e6b7e990e824f0b98f2d28283c1852b45acecced47", + "language": "Jupyter", + "lines": 153, + "truncated": false, + "block": 1, + "row": 1779 + }, + { + "path": "vCO_03_feature_selection.ipynb", + "sha256": "b8c61ceb1b3559a40c5f7a6462b11a9f63741fa4454d3b1c774971f35ea91436", + "language": "Jupyter", + "lines": 78, + "truncated": false, + "block": 1, + "row": 1693 + }, + { + "path": "vCO_04_dimensionality_reduction.ipynb", + "sha256": "177307145b81bd6124cec486241a7ce3a88786ff3a03d590e3d745e40aa18215", + "language": "Jupyter", + "lines": 91, + "truncated": false, + "block": 1, + "row": 1697 + }, + { + "path": "vCO_05_clustering.ipynb", + "sha256": "f6fa5cefde053dd900a872ae1891e0e55bff8913e21163437c6b2a2b0790a280", + "language": "Jupyter", + "lines": 53, + "truncated": false, + "block": 1, + "row": 1686 + }, + { + "path": "vCO_06_annotation.ipynb", + "sha256": "9232e17b4fb56d79be9ed58a5390676e7709229d62814da420e4b50fce11d59d", + "language": "Jupyter", + "lines": 834, + "truncated": false, + "block": 1, + "row": 2036 + }, + { + "path": "vCO_07_integration_Scranorama.ipynb", + "sha256": "716c10d0c6917e69e2e897b5b6d9709f0dc4dff93f388826d849943970d497c7", + "language": "Jupyter", + "lines": 158, + "truncated": false, + "block": 1, + "row": 1769 + }, + { + "path": "vCO_08_nomenclature_post_integration-PT2.ipynb", + "sha256": "3a78dab5dd6c854ff750a142750a52ac9693448b181b65eb8542ccdc1ed2dd74", + "language": "Jupyter", + "lines": 507, + "truncated": false, + "block": 1, + "row": 1980 + } + ] +} \ No newline at end of file diff --git a/manifests/5e/github.com__ai-med__vox2cortex.json b/manifests/5e/github.com__ai-med__vox2cortex.json new file mode 100644 index 0000000000000000000000000000000000000000..3b6c0d46f0a4a832c82cd16f10af6007487a3845 --- /dev/null +++ b/manifests/5e/github.com__ai-med__vox2cortex.json @@ -0,0 +1,480 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ai-med/vox2cortex", + "url": "https://github.com/ai-med/Vox2Cortex", + "host": "github.com", + "commit": "ef10ca2cf9999e1698a98a4bf9dce19b0000bd10", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "31b5cb25f71100bb2fd9e8a80aca741bdf88d038e35c2b267e3fb905459eac50", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2231 + }, + { + "path": "README.md", + "sha256": "dbf11762504513fd57167ce3c12c04c72f9baf567496b88d05837c564b689722", + "language": "Text", + "lines": 140, + "truncated": false, + "block": 1, + "row": 11936 + }, + { + "path": "docker/build.sh", + "sha256": "005fa6951c5c2472c7f8bd92a5b7feec51eff76a2f89f6dfb598be4b9ad0e6e8", + "language": "Shell", + "lines": 10, + "truncated": false, + "block": 1, + "row": 11130 + }, + { + "path": "preprocessing/abdomen/average_organ_template.py", + "sha256": "a1031581194e519218d1c2f1c0eb2ffc70856d1cf2b6f05bf05ee57ca1bebd71", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 1, + "row": 7000 + }, + { + "path": "preprocessing/abdomen/compute_intensity_stats.ipynb", + "sha256": "436365c7f7bb072dc952cbb46acb9e98bbe3a7016351096a07c4fb49041519c4", + "language": "Jupyter", + "lines": 66, + "truncated": false, + "block": 1, + "row": 1699 + }, + { + "path": "preprocessing/abdomen/preprocess_abdomen_ct_1k.ipynb", + "sha256": "1b64fee3d9d91a0095ebfbb6be1a4d68aa7096d3882a163b4bd8ecee34d7b0be", + "language": "Jupyter", + "lines": 249, + "truncated": false, + "block": 1, + "row": 1884 + }, + { + "path": "preprocessing/brain/preprocess.py", + "sha256": "61cd8fb88ddb7fb2f1ef72cb9c9b9ec7ebcffbbde629bf59f9557c4f907877f9", + "language": "Python", + "lines": 191, + "truncated": false, + "block": 1, + "row": 8125 + }, + { + "path": "preprocessing/brain/preprocess_scans.sh", + "sha256": "4ab722f8b3560ce05e226da51ab1a41919d73fdf446ca3caa5904834844a39c7", + "language": "Shell", + "lines": 42, + "truncated": false, + "block": 1, + "row": 11503 + }, + { + "path": "preprocessing/brain/v2cc_resampling.sh", + "sha256": "5932d37113659301d3a2e5c8620cb06f0a3974cc10e9af936d4774fd1eb86f9c", + "language": "Shell", + "lines": 55, + "truncated": false, + "block": 1, + "row": 11697 + }, + { + "path": "supplementary_material/abdomen_template/create_color_file.py", + "sha256": "f0b8a153fa2b79b04693903a4250405cd2bade3f810fc1eccdc759684c6f7940", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 1, + "row": 5633 + }, + { + "path": "supplementary_material/brain_template/create_color_file.py", + "sha256": "5179a81ae6a5889e6329457ddec4cf8ef3af8eb280c261bd3e5f4fbd3942b347", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 1, + "row": 5381 + }, + { + "path": "supplementary_material/brain_template/fsaverage/fs2ply.py", + "sha256": "e5328977e8751e0f2ef27f9b4ae2c674e0114f1f17005db6f0d78b338f07debf", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 1, + "row": 5383 + }, + { + "path": "supplementary_material/brain_template/fsaverage6/fs2ply.py", + "sha256": "e5328977e8751e0f2ef27f9b4ae2c674e0114f1f17005db6f0d78b338f07debf", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 1, + "row": 5383 + }, + { + "path": "vox2organ/__init__.py", + "sha256": "c2cabc0f04e29feb3a335c541f9be37a3f3f77f2c5a0334cf46b052a8c873eea", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 1, + "row": 5109 + }, + { + "path": "vox2organ/data/abdomen.py", + "sha256": "922e5b8292aeec055e16586333de35b8252a022a67227d52eafe200484473eb3", + "language": "Python", + "lines": 201, + "truncated": false, + "block": 1, + "row": 7771 + }, + { + "path": "vox2organ/data/cortex.py", + "sha256": "395a9de2f1846c06c144eb8e1b780c1627c5561da270e145d376d6fd6f7d8992", + "language": "Python", + "lines": 161, + "truncated": false, + "block": 1, + "row": 7511 + }, + { + "path": "vox2organ/data/cortex_labels.py", + "sha256": "a3adb1ab877f95746e24dff9bcceb1c31b880cdf58813be02c520d48a6b4015f", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 1, + "row": 5522 + }, + { + "path": "vox2organ/data/dataset.py", + "sha256": "1a509182183f5fbde26a0ecffc0dd0ad60370a0ff3a431bab687ebf1f8e27a05", + "language": "Python", + "lines": 311, + "truncated": false, + "block": 1, + "row": 8602 + }, + { + "path": "vox2organ/data/dataset_split_handler.py", + "sha256": "87e0037987bfa8d43743ff9ff69108b832e31d11dc1c327621616479a83fe9f9", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 1, + "row": 5441 + }, + { + "path": "vox2organ/data/image_and_mesh_dataset.py", + "sha256": "06a9ad17f1162ff7821808c663d59cd2e0f8116a997b8446e5a82e81a1076459", + "language": "Python", + "lines": 771, + "truncated": false, + "block": 1, + "row": 9592 + }, + { + "path": "vox2organ/data/supported_datasets.py", + "sha256": "89148c81a0edbcdb8cbf69f3ea6a8e1b032e2fa4c3b6d789ec6c4c4ded1d5036", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 1, + "row": 6257 + }, + { + "path": "vox2organ/logger/__init__.py", + "sha256": "e0ce153c1e570ccfa448da45890512a152824b2cb70d4231ca6d3c0a14c9f0af", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4971 + }, + { + "path": "vox2organ/logger/logger.py", + "sha256": "4ae972b0e57281d263c2978236c95489d6f4c96410c5b937d6a29ba5f25a9ea7", + "language": "Python", + "lines": 469, + "truncated": false, + "block": 1, + "row": 8741 + }, + { + "path": "vox2organ/main.py", + "sha256": "ff8f5b7c2c5eb92387dbc50b055253426072c240c67ee2372d8810bcf8aea29e", + "language": "Python", + "lines": 298, + "truncated": false, + "block": 1, + "row": 8693 + }, + { + "path": "vox2organ/models/base_model.py", + "sha256": "6a17a02ee14a204107ebee9126438fb468a75188995bd18c5ca695dd5f508d90", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 1, + "row": 6572 + }, + { + "path": "vox2organ/models/graph_net.py", + "sha256": "c71ceefabf1fcf5beaa05a4a9438a1bb2f251d2f47ea31dc068a40727a77bb8d", + "language": "Python", + "lines": 365, + "truncated": false, + "block": 1, + "row": 8715 + }, + { + "path": "vox2organ/models/model_handler.py", + "sha256": "f11c56531f957e43f6b5c55ce589390ddbe5ed9b1fe754aba96ed3820aadbcd8", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 1, + "row": 5367 + }, + { + "path": "vox2organ/models/u_net.py", + "sha256": "d260a3ebf7a5b3eaee68873a6628bbf81cbe4be35de9487e188bc4d30647ce44", + "language": "Python", + "lines": 322, + "truncated": false, + "block": 1, + "row": 8545 + }, + { + "path": "vox2organ/models/unet_flow.py", + "sha256": "efc57e498b02317d0e154ecb4b6c4badd76e5b2a6975073c5113e079eafa432d", + "language": "Python", + "lines": 265, + "truncated": false, + "block": 1, + "row": 8242 + }, + { + "path": "vox2organ/models/vox2cortex.py", + "sha256": "0b89f0708da10db61efccea6a684655c9bb2542047fb9ac873306e57c0252dd0", + "language": "Python", + "lines": 214, + "truncated": false, + "block": 1, + "row": 8114 + }, + { + "path": "vox2organ/params/default.py", + "sha256": "24bc95f7b9430e931752b7aaf6b1ac9fd86680245e16b8ee682025fe257de45b", + "language": "Python", + "lines": 361, + "truncated": false, + "block": 1, + "row": 8550 + }, + { + "path": "vox2organ/params/groups.py", + "sha256": "f04b1801fc8e079868d28f8f7730bbbfdc8757adb69b720e1f6069efa1a765f9", + "language": "Python", + "lines": 154, + "truncated": false, + "block": 1, + "row": 7159 + }, + { + "path": "vox2organ/params/models.py", + "sha256": "985aba0f18fdfb6a5ce8eee52f448fd893338d336992f11b7668824bcd274901", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 1, + "row": 5100 + }, + { + "path": "vox2organ/utils/coordinate_transform.py", + "sha256": "ad402c83f31f47eab4874208116581cf3f91d6083e5b7e9c74d290d6abc13dee", + "language": "Python", + "lines": 188, + "truncated": false, + "block": 1, + "row": 7882 + }, + { + "path": "vox2organ/utils/cortical_thickness.py", + "sha256": "a6389cfc749780dabf4dbdb503641ba4bc3a6d1314217b240478e02f1fbc9799", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 1, + "row": 7115 + }, + { + "path": "vox2organ/utils/custom_layers.py", + "sha256": "f74a3c66ab3457995d0dd5be6440263e492a6469e1702193891cbe3d60d783f7", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 1, + "row": 5200 + }, + { + "path": "vox2organ/utils/distributed.py", + "sha256": "aee879fc27a8c86c31abbf7e1da98189cf056b3a5e58fb42703868f97e4c1247", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 1, + "row": 6523 + }, + { + "path": "vox2organ/utils/eval_metrics.py", + "sha256": "31e18573cba93395b6ed4d5802ed5c75f5609e7f763b74695b347833746bf710", + "language": "Python", + "lines": 280, + "truncated": false, + "block": 1, + "row": 8142 + }, + { + "path": "vox2organ/utils/evaluate.py", + "sha256": "da2c0d8485a0c5040275c390189c5bc80f0815aa07153777944dc876afa58ec8", + "language": "Python", + "lines": 311, + "truncated": false, + "block": 1, + "row": 8674 + }, + { + "path": "vox2organ/utils/feature_aggregation.py", + "sha256": "3f74e32b8c820e1ea95f8abfce7dd8e5a5ce806852fabefc99f48e01879a4887", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 1, + "row": 6969 + }, + { + "path": "vox2organ/utils/file_handle.py", + "sha256": "95e6776bf5fd03d7da20ca240c73e4bc570702c23981757e9c27f450b36c05c8", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 1, + "row": 6499 + }, + { + "path": "vox2organ/utils/graph_conv.py", + "sha256": "0deeab524020e4a6987c9d84cc46b3d3ac8e06c71df0c47cd9f9de7d2f3f56c6", + "language": "Python", + "lines": 200, + "truncated": false, + "block": 1, + "row": 7956 + }, + { + "path": "vox2organ/utils/losses.py", + "sha256": "98ab45853b30d3014274b29fad583e2991efd0d9ac144e869c3e0d4e14bc2512", + "language": "Python", + "lines": 602, + "truncated": false, + "block": 1, + "row": 9401 + }, + { + "path": "vox2organ/utils/mesh.py", + "sha256": "4a7494421f94d288a71be97d31782899294cc1544b57fa6470e313e03d20b105", + "language": "Python", + "lines": 498, + "truncated": false, + "block": 1, + "row": 9246 + }, + { + "path": "vox2organ/utils/model_names.py", + "sha256": "344b2e9113d9b4fd3acd576fd3af12632e2b565c4c639db83c76a3a8c4189b97", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 1, + "row": 5161 + }, + { + "path": "vox2organ/utils/modes.py", + "sha256": "65507cacd4e7fac62a1914bb496459a2d138048d58d36b948d1da0c232d15d50", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 1, + "row": 5241 + }, + { + "path": "vox2organ/utils/template.py", + "sha256": "a9ae2138d3a81ace67c6eeec99b657660826781a7a213abc1516140628bbca1e", + "language": "Python", + "lines": 287, + "truncated": false, + "block": 1, + "row": 8304 + }, + { + "path": "vox2organ/utils/test.py", + "sha256": "74013029de7e82bc071d7739be46a13e0a47941f698996401cd51339b8689808", + "language": "Python", + "lines": 251, + "truncated": false, + "block": 1, + "row": 8166 + }, + { + "path": "vox2organ/utils/train.py", + "sha256": "2baf91cdc083b27eb5b4d1c77cdfe67c104a9c5d41ae69ae5724e411592c05f7", + "language": "Python", + "lines": 886, + "truncated": false, + "block": 1, + "row": 9630 + }, + { + "path": "vox2organ/utils/train_test.py", + "sha256": "13c2c6159927d2a07245fb9de4863fdd313a798a6c77423d6d4ad55d31f451b0", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5322 + }, + { + "path": "vox2organ/utils/utils.py", + "sha256": "93afadf7b69762b78b9c3ee839b4d83086dbf8bb0034fef7a881738ef5bc02fc", + "language": "Python", + "lines": 443, + "truncated": false, + "block": 1, + "row": 9029 + }, + { + "path": "vox2organ/utils/visualization.py", + "sha256": "f78d59f1eda0de778f681c100604e6ff3800257169d58f759dc26bb5c5af63b9", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 1, + "row": 6809 + } + ] +} \ No newline at end of file diff --git a/manifests/5e/github.com__xiaoqiansun0104__caiman-based-ca2-processing.json b/manifests/5e/github.com__xiaoqiansun0104__caiman-based-ca2-processing.json new file mode 100644 index 0000000000000000000000000000000000000000..b76d94b4d32cfd530c696503e7413e1b2ef3b5fa --- /dev/null +++ b/manifests/5e/github.com__xiaoqiansun0104__caiman-based-ca2-processing.json @@ -0,0 +1,48 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/xiaoqiansun0104/caiman-based-ca2-processing", + "url": "https://github.com/xiaoqiansun0104/caiman-based-ca2-processing", + "host": "github.com", + "commit": "1360d78dcc7d00ab5ece8af13f1a7660142bc410", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "CaImAn/CaImAn_Pipeline.py", + "sha256": "0b4a21649e501acb440623fa6662709a25e8fa82d4032ac08390af73904d24e4", + "language": "Python", + "lines": 279, + "truncated": false, + "block": 2, + "row": 2066 + }, + { + "path": "CaImAn/Functions.py", + "sha256": "6b5ae304fff29c1b922c17a953590c051ea75c788673ac85fdd337df4975259f", + "language": "Python", + "lines": 169, + "truncated": false, + "block": 2, + "row": 1961 + }, + { + "path": "LICENSE", + "sha256": "0b1f69b7c810268a069bc1ba4ef9cc90302cda579e69b5ad21d0b82c6307e9f6", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1130 + }, + { + "path": "README.md", + "sha256": "3958668af325dfae61530a24af93fb3519ab6f2f9f015cfb68958dec2d056ce5", + "language": "Text", + "lines": 102, + "truncated": false, + "block": 2, + "row": 2630 + } + ] +} \ No newline at end of file diff --git a/manifests/5f/github.com__greener-group__openfe.json b/manifests/5f/github.com__greener-group__openfe.json new file mode 100644 index 0000000000000000000000000000000000000000..3d55f856b321890a1f754afe3951a6f2ad4a81b6 --- /dev/null +++ b/manifests/5f/github.com__greener-group__openfe.json @@ -0,0 +1,1866 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/greener-group/openfe", + "url": "https://github.com/greener-group/openfe", + "host": "github.com", + "commit": "4ff3416c01a0eb26aa3a2dd9e67f459eba2e79d3", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "451bfbac1087b5a608a73df1c585cb3c6b6f27c48f88f9847eecf2a0b9771b23", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2131 + }, + { + "path": "README.md", + "sha256": "d49854cbce56369fb76d4ca837ad57ae26f32eb9ad6f5180e26037ca89d85bcd", + "language": "Text", + "lines": 41, + "truncated": false, + "block": 1, + "row": 11849 + }, + { + "path": "devtools/data/fix_rbfe_results.py", + "sha256": "ba450d6dbc8afb5c5385cc3cd2504c6d9924b6645a3859cefaffc15a9362161b", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 1, + "row": 6046 + }, + { + "path": "devtools/data/gen_serialized_results.py", + "sha256": "810533b4c8bd9f3b183b8dbe183dd128be4e533c9c390a2ab6a5710ba3e4ed05", + "language": "Python", + "lines": 314, + "truncated": false, + "block": 1, + "row": 8842 + }, + { + "path": "devtools/debug_openmm.sh", + "sha256": "3039dcca71d48fffb61f1905817b50675c067787cc9ef4c20c6492116976026f", + "language": "Shell", + "lines": 31, + "truncated": false, + "block": 1, + "row": 11501 + }, + { + "path": "docs/_ext/sass.py", + "sha256": "7653d25956ba62698bb20f735d5b5eacab1875ac495d5960428ac6009d5cb710", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 1, + "row": 6565 + }, + { + "path": "docs/conf.py", + "sha256": "5bc9201a903c6ecd9ff35872dcd66c6be14bbb1eb23b0f58c662b0262ecc5a9d", + "language": "Python", + "lines": 255, + "truncated": false, + "block": 1, + "row": 8107 + }, + { + "path": "openfe/__init__.py", + "sha256": "d211f2ea885f730b5df244f91e3cec7fae3297284be6e9144c328cbcabfc69dc", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 1, + "row": 6333 + }, + { + "path": "openfe/analysis/__init__.py", + "sha256": "9d3a893680dca29134c54afacda89bbc99bafdaf6aea3fe8980c2732f89be17f", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5122 + }, + { + "path": "openfe/analysis/plotting.py", + "sha256": "17dfff335b50f309f4a35bcfc5c97cf0e75b2365002e68155f5940a025205938", + "language": "Python", + "lines": 361, + "truncated": false, + "block": 1, + "row": 8614 + }, + { + "path": "openfe/due.py", + "sha256": "7d13111a41d3dcf5a1cf0619f83bb75a914bac7367f296584b1a913216c73549", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 1, + "row": 6293 + }, + { + "path": "openfe/protocols/__init__.py", + "sha256": "d91143de66fda8ad385e7bbc26dfd26ee68554c26194578e18a3be819bae791b", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 1, + "row": 5102 + }, + { + "path": "openfe/protocols/openmm_afe/__init__.py", + "sha256": "ec02b34dbf25d76dcb90422d62bb41b33c84bdb4cd6ecc86a8d4c274bfc20d02", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 1, + "row": 5681 + }, + { + "path": "openfe/protocols/openmm_afe/base.py", + "sha256": "02c5bc7b5a6905d4dcad16f37e2e2c596b832f2610d67e5930e6acd0c19867b0", + "language": "Python", + "lines": 1280, + "truncated": false, + "block": 1, + "row": 9762 + }, + { + "path": "openfe/protocols/openmm_afe/equil_afe_settings.py", + "sha256": "c0ae6b963149c6f509db0d62b298ab970dbdab687899b74ecf2278ab47f71e0c", + "language": "Python", + "lines": 443, + "truncated": false, + "block": 1, + "row": 8963 + }, + { + "path": "openfe/protocols/openmm_afe/equil_binding_afe_method.py", + "sha256": "1c236685f2b114fd43789b2b4c954535bcd74d47c9e9e9021cc81745409029f9", + "language": "Python", + "lines": 1334, + "truncated": false, + "block": 1, + "row": 9783 + }, + { + "path": "openfe/protocols/openmm_afe/equil_solvation_afe_method.py", + "sha256": "a8e68704d16f8a7a71cbf3ced7efb40c05b4eee79193a4417d8895fa1d18a34d", + "language": "Python", + "lines": 962, + "truncated": false, + "block": 1, + "row": 9700 + }, + { + "path": "openfe/protocols/openmm_md/__init__.py", + "sha256": "e4957ceb7510249b5d81e47e8ffa80e6be18d9a2ddc2b690d1071d29ba337815", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 1, + "row": 5360 + }, + { + "path": "openfe/protocols/openmm_md/plain_md_methods.py", + "sha256": "9b2d2916d09b3cd08e8ea0de39bf02fb560dd8418ee73b57bed98bb602ecd5c3", + "language": "Python", + "lines": 725, + "truncated": false, + "block": 1, + "row": 9509 + }, + { + "path": "openfe/protocols/openmm_md/plain_md_settings.py", + "sha256": "31e2e44ccf1fcc2499befceb97a421f3fd785a43527d0678338961f303939587", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 1, + "row": 6071 + }, + { + "path": "openfe/protocols/openmm_rfe/__init__.py", + "sha256": "038870300c903358d384bb670d7f2f34db5426f5cad430704867e05a49d3ef23", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 1, + "row": 5292 + }, + { + "path": "openfe/protocols/openmm_rfe/_rfe_utils/__init__.py", + "sha256": "ae50b253745240ee8b23f41e953e771ec54f224271ceaf7ced5614cb817e8764", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 1, + "row": 5113 + }, + { + "path": "openfe/protocols/openmm_rfe/_rfe_utils/lambdaprotocol.py", + "sha256": "ca54453183c170e1461effbd7e0b6b62d85c8b4ccfd16be31e2c88634b88f8d1", + "language": "Python", + "lines": 340, + "truncated": false, + "block": 1, + "row": 8933 + }, + { + "path": "openfe/protocols/openmm_rfe/_rfe_utils/multistate.py", + "sha256": "e60fce80aed3203c39bd460c82188120d665b3ac3a4adbcd9df43219f7ee6a14", + "language": "Python", + "lines": 311, + "truncated": false, + "block": 1, + "row": 8883 + }, + { + "path": "openfe/protocols/openmm_rfe/_rfe_utils/relative.py", + "sha256": "003714e99673378ccbe70dd57d92855f16c7e71ee767a50fa32fe98cd6795716", + "language": "Python", + "lines": 3000, + "truncated": false, + "block": 1, + "row": 9875 + }, + { + "path": "openfe/protocols/openmm_rfe/_rfe_utils/topologyhelpers.py", + "sha256": "ceaea404cbbfb0bee164656c2e8443e645ad68f23eb73434ec7f936d73b63499", + "language": "Python", + "lines": 722, + "truncated": false, + "block": 1, + "row": 9546 + }, + { + "path": "openfe/protocols/openmm_rfe/equil_rfe_methods.py", + "sha256": "0ca3640ef0ef9bce73cbb875864ce455ab2f5d53522684405b042750ba715d3c", + "language": "Python", + "lines": 1323, + "truncated": false, + "block": 1, + "row": 9787 + }, + { + "path": "openfe/protocols/openmm_rfe/equil_rfe_settings.py", + "sha256": "0754c1c2312251a4a860c43a796647a241b822a489ee2d8b703e196682b5c175", + "language": "Python", + "lines": 158, + "truncated": false, + "block": 1, + "row": 7480 + }, + { + "path": "openfe/protocols/openmm_septop/__init__.py", + "sha256": "a0aba64383ceee56462481c957066f1220cd9c58f554626e362907b5398ebb7a", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 1, + "row": 5489 + }, + { + "path": "openfe/protocols/openmm_septop/base.py", + "sha256": "4a43649c4f4a30aa4b51832985c431d33443989ab94d767b4d0e87c92714c438", + "language": "Python", + "lines": 1376, + "truncated": false, + "block": 1, + "row": 9775 + }, + { + "path": "openfe/protocols/openmm_septop/equil_septop_method.py", + "sha256": "fd78bcb192d8ce7c791329cc5ed16b5f4e5f1aa1613ffaa27a53375f93826cdc", + "language": "Python", + "lines": 2426, + "truncated": false, + "block": 1, + "row": 9851 + }, + { + "path": "openfe/protocols/openmm_septop/equil_septop_settings.py", + "sha256": "3d013b04ae70a324159335931c504d7aeb69dae61d8f749b3f7a7e7d05f1ec11", + "language": "Python", + "lines": 442, + "truncated": false, + "block": 1, + "row": 8827 + }, + { + "path": "openfe/protocols/openmm_septop/utils.py", + "sha256": "b7c1eab2f8b775d6df9351bbd7b5700e4d27704ef086aa8bc5dd51cb4b22a305", + "language": "Python", + "lines": 162, + "truncated": false, + "block": 1, + "row": 7705 + }, + { + "path": "openfe/protocols/openmm_utils/__init__.py", + "sha256": "01ba4719c80b6fe911b091a7c05124b64eeece964e09c058ef8f9805daca546b", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4956 + }, + { + "path": "openfe/protocols/openmm_utils/charge_generation.py", + "sha256": "3c27e5317677a62752694a95e7c95803de6ec43db3494ac979ae67f899ee7661", + "language": "Python", + "lines": 522, + "truncated": false, + "block": 1, + "row": 9295 + }, + { + "path": "openfe/protocols/openmm_utils/multistate_analysis.py", + "sha256": "9384669e906f2e99312c82bda6b43c0879338ea9eec18dde3e0343b91490cd0b", + "language": "Python", + "lines": 499, + "truncated": false, + "block": 1, + "row": 9207 + }, + { + "path": "openfe/protocols/openmm_utils/omm_compute.py", + "sha256": "5f61feae0aff9a71b352dd856bb72a60f3e024b8921451361389ace23bda3883", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 1, + "row": 6709 + }, + { + "path": "openfe/protocols/openmm_utils/omm_settings.py", + "sha256": "3234976caafe04f4300c27758a61a7ed711a31a361ce43cbfb883b7fcac2079b", + "language": "Python", + "lines": 713, + "truncated": false, + "block": 1, + "row": 9505 + }, + { + "path": "openfe/protocols/openmm_utils/settings_validation.py", + "sha256": "02864d52100e38ecb9ee6e31b05c4397b6318dfacd17c5fbfdf2056fd3a9307c", + "language": "Python", + "lines": 315, + "truncated": false, + "block": 1, + "row": 8356 + }, + { + "path": "openfe/protocols/openmm_utils/system_creation.py", + "sha256": "a676a98f7d717727f28f176a0770c314bfd321b34643acc8180fbe15502fb08f", + "language": "Python", + "lines": 247, + "truncated": false, + "block": 1, + "row": 8312 + }, + { + "path": "openfe/protocols/openmm_utils/system_validation.py", + "sha256": "5d2ed3ad2e030e6cc66076c1e839e8dceeba2b0c7f78f1865cce35dd1156da6e", + "language": "Python", + "lines": 184, + "truncated": false, + "block": 1, + "row": 7600 + }, + { + "path": "openfe/protocols/restraint_utils/geometry/__init__.py", + "sha256": "ce7437e36114e000e3a89d6931e09f5f3f54104205e2097129206d3854c30808", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 1, + "row": 5159 + }, + { + "path": "openfe/protocols/restraint_utils/geometry/base.py", + "sha256": "b72060451ea83b8d664fe3f4e02d7378fcf3fa9610cb4fdfb13d33115e9049aa", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 1, + "row": 5808 + }, + { + "path": "openfe/protocols/restraint_utils/geometry/boresch/__init__.py", + "sha256": "4b68e801a82fbaa60fcff9af3f43067955fc0bd0a6f2338a0fce3a793a32975b", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 1, + "row": 5091 + }, + { + "path": "openfe/protocols/restraint_utils/geometry/boresch/geometry.py", + "sha256": "494cbe329caf8568205f1aed284308df7dcdb9ffa243111d0a5617fa2fbd354e", + "language": "Python", + "lines": 317, + "truncated": false, + "block": 1, + "row": 8702 + }, + { + "path": "openfe/protocols/restraint_utils/geometry/boresch/guest.py", + "sha256": "935e61b19796edd93b7e3822f64acb3ec7d00a9da9a1ab18999886798f0db7fa", + "language": "Python", + "lines": 247, + "truncated": false, + "block": 1, + "row": 8057 + }, + { + "path": "openfe/protocols/restraint_utils/geometry/boresch/host.py", + "sha256": "21da3b8b26f51d1c173ba6ee6a44bb8869153db660dfb293ea5be64ab7fccf4a", + "language": "Python", + "lines": 784, + "truncated": false, + "block": 1, + "row": 9576 + }, + { + "path": "openfe/protocols/restraint_utils/geometry/flatbottom.py", + "sha256": "a7a62fab8cb7c6d44fef3aa6c101b6a411a9113ee6e8be74566ba562b2b36516", + "language": "Python", + "lines": 127, + "truncated": false, + "block": 1, + "row": 7125 + }, + { + "path": "openfe/protocols/restraint_utils/geometry/harmonic.py", + "sha256": "8cab974f2cf9dbd62ba724327248b8deebc11d86b0e14be20bc1e9dbcff1c49b", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 1, + "row": 6883 + }, + { + "path": "openfe/protocols/restraint_utils/geometry/utils.py", + "sha256": "ff6d434ca18e162341e3d7a90096e71795521d04416da549351477726ddf27bf", + "language": "Python", + "lines": 789, + "truncated": false, + "block": 1, + "row": 9502 + }, + { + "path": "openfe/protocols/restraint_utils/openmm/omm_forces.py", + "sha256": "4d242736cb60666d9daece0124982c36db62666b85707f2019ad26051aa41d8f", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 1, + "row": 7025 + }, + { + "path": "openfe/protocols/restraint_utils/openmm/omm_restraints.py", + "sha256": "9893740ee23b472fbc43d1cfb06744ede723e21316acee9b5fde5bc06f82d89b", + "language": "Python", + "lines": 685, + "truncated": false, + "block": 1, + "row": 9454 + }, + { + "path": "openfe/protocols/restraint_utils/settings.py", + "sha256": "9d7b60ea65aec4b70f5a9434bd44a639073eaa8862ea76dd1ec02cc706cbf6d2", + "language": "Python", + "lines": 203, + "truncated": false, + "block": 1, + "row": 7959 + }, + { + "path": "openfe/setup/__init__.py", + "sha256": "c1ec160d901b9870bf1bcf9547bcc60a85ecb18f20ff998cbe1adc2c2f8e57e6", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 1, + "row": 5418 + }, + { + "path": "openfe/setup/alchemical_network_planner/__init__.py", + "sha256": "3f5eeb2482d9ed8fd40e003190c57d66c3785f36a4467124fc4eeabdb826a9e7", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 1, + "row": 5183 + }, + { + "path": "openfe/setup/alchemical_network_planner/abstract_alchemical_network_planner.py", + "sha256": "2d4d5af0e043d486f6eccfbc1d20ce5cd9c4bc829a3b754fc54f399a935991f5", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5379 + }, + { + "path": "openfe/setup/alchemical_network_planner/relative_alchemical_network_planner.py", + "sha256": "5462027cfff20f861be3340b907affe9a246a2b642f96b6ee867b034f44b6231", + "language": "Python", + "lines": 389, + "truncated": false, + "block": 1, + "row": 8966 + }, + { + "path": "openfe/setup/atom_mapping/__init__.py", + "sha256": "761d36f42b9bdf1e5d0002bccbb785d96c45129fac3849854501fa3f0fcd98b0", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 1, + "row": 5187 + }, + { + "path": "openfe/setup/atom_mapping/ligandatommapper.py", + "sha256": "f9ecfc10e478d4b21184d6f89b378e4cf49ae23a6112239a1126abecf94147f7", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 1, + "row": 6341 + }, + { + "path": "openfe/setup/atom_mapping/lomap_mapper.py", + "sha256": "ee7f9f72e6e4c719e4dc614a30c41962f1d874de8a166a1946ae83eee3180b38", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 1, + "row": 5184 + }, + { + "path": "openfe/setup/atom_mapping/lomap_scorers.py", + "sha256": "b1e70505d63aa6cd1fac3a69f9c421fa18ccfbd077fcd3cc6c9da2e2305f9a17", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5387 + }, + { + "path": "openfe/setup/atom_mapping/perses_mapper.py", + "sha256": "a1746ba5abe4154bcae5b444acdec91222ac55bfff709a3bb2aa67c5a509f684", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 1, + "row": 7011 + }, + { + "path": "openfe/setup/atom_mapping/perses_scorers.py", + "sha256": "aec5d80bc27869713462cecef6724d7d484c3ea1d42b437be1d945f9ff657273", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 1, + "row": 7182 + }, + { + "path": "openfe/setup/chemicalsystem_generator/__init__.py", + "sha256": "c9a203944648bfe3d85e1e8d27ca290f4d59d33bc2d33e85f4b23775109b8754", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 1, + "row": 5197 + }, + { + "path": "openfe/setup/chemicalsystem_generator/abstract_chemicalsystem_generator.py", + "sha256": "dfb39792d65028151216c41445be54952996a75b4190a1c77271d1ebe2cd97a3", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 1, + "row": 5511 + }, + { + "path": "openfe/setup/chemicalsystem_generator/easy_chemicalsystem_generator.py", + "sha256": "401e417492a3587c548620b3384da94fa88be0b1b16a0fec2f8900a40acf5fc9", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 1, + "row": 7301 + }, + { + "path": "openfe/setup/ligand_network_planning.py", + "sha256": "d605bacbf4044059e9082207e25fbce774924da5977381cb062ef39b5495d087", + "language": "Python", + "lines": 471, + "truncated": false, + "block": 1, + "row": 9051 + }, + { + "path": "openfe/storage/metadatastore.py", + "sha256": "4ce606200e73bcffbe734d3a489ddc129f06f971967eb51b7518c5072f2d84b3", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 1, + "row": 6985 + }, + { + "path": "openfe/storage/resultclient.py", + "sha256": "1abb592caeef377d258f4db09564feb0c6c314b845902942d288b9f4beafda21", + "language": "Python", + "lines": 287, + "truncated": false, + "block": 1, + "row": 8412 + }, + { + "path": "openfe/storage/resultserver.py", + "sha256": "9548c7abd9a78c0bc4c2f73313f6541c969164a2abdd69f8e94238b6d05facd3", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 1, + "row": 6413 + }, + { + "path": "openfe/tests/analysis/test_plotting.py", + "sha256": "ab8d6b97dc608a292ebc962b6c58e4d35f33edadd5388ed6b743299b8a153845", + "language": "Python", + "lines": 169, + "truncated": false, + "block": 1, + "row": 8102 + }, + { + "path": "openfe/tests/conftest.py", + "sha256": "6d9f7a0357911747798733778c51a19202438404e25d96bdaaec0d3b458278dd", + "language": "Python", + "lines": 519, + "truncated": false, + "block": 1, + "row": 9183 + }, + { + "path": "openfe/tests/data/external_formats/__init__.py", + "sha256": "01ba4719c80b6fe911b091a7c05124b64eeece964e09c058ef8f9805daca546b", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4956 + }, + { + "path": "openfe/tests/data/openmm_afe/__init__.py", + "sha256": "01ba4719c80b6fe911b091a7c05124b64eeece964e09c058ef8f9805daca546b", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4956 + }, + { + "path": "openfe/tests/data/openmm_md/__init__.py", + "sha256": "01ba4719c80b6fe911b091a7c05124b64eeece964e09c058ef8f9805daca546b", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4956 + }, + { + "path": "openfe/tests/dev/serialization_test_templates.py", + "sha256": "d08f484a421fa12e1e3210424d6ad80c8f9ab9146515952bac877ec72a12a359", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 1, + "row": 6095 + }, + { + "path": "openfe/tests/protocols/conftest.py", + "sha256": "d5b9ecbf0935d9ef1affb5559ec2ea6d20175be0bc52f62dfef8c1149b3a7fbb", + "language": "Python", + "lines": 376, + "truncated": false, + "block": 1, + "row": 8696 + }, + { + "path": "openfe/tests/protocols/openmm_abfe/conftest.py", + "sha256": "a7020ec4df5f8e4898fd20d1ab50e9cccab9af832d9241d9e166094e823a27e2", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 1, + "row": 5697 + }, + { + "path": "openfe/tests/protocols/openmm_abfe/test_abfe_energies.py", + "sha256": "2df916c544b11bc8a722fb18cae449730d2351e97a87aaa37293137f837f577b", + "language": "Python", + "lines": 280, + "truncated": false, + "block": 1, + "row": 8478 + }, + { + "path": "openfe/tests/protocols/openmm_abfe/test_abfe_protocol.py", + "sha256": "f5d33d871646822dbf6fae294472713fc3f389be8eb98aa9b0551c1ff3d0f4f3", + "language": "Python", + "lines": 522, + "truncated": false, + "block": 1, + "row": 9292 + }, + { + "path": "openfe/tests/protocols/openmm_abfe/test_abfe_protocol_results.py", + "sha256": "1db5efa4e7dd3d10549fef8ae3e6a6092551991404bc9f73d1e419978cf3252d", + "language": "Python", + "lines": 200, + "truncated": false, + "block": 1, + "row": 8071 + }, + { + "path": "openfe/tests/protocols/openmm_abfe/test_abfe_settings.py", + "sha256": "19c3204be4ad7b6e6d7f98611a43662d501781c83025ac0fdb41e239ac8a3385", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 1, + "row": 6510 + }, + { + "path": "openfe/tests/protocols/openmm_abfe/test_abfe_slow.py", + "sha256": "33db48dd3c518e7ee4ca12f2bdf97f19f0f1bb1985005171e8296859027c649e", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 1, + "row": 7380 + }, + { + "path": "openfe/tests/protocols/openmm_abfe/test_abfe_tokenization.py", + "sha256": "2d675f7c8c11a425cd2f1d1a34b08f4a3d24b79f422a59c8cb2b04fd86d194b2", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 1, + "row": 6906 + }, + { + "path": "openfe/tests/protocols/openmm_abfe/test_abfe_validation.py", + "sha256": "c20dc4a9cbb5738a2b0c47b409c304293399099bd1c9490744497e18e5c60581", + "language": "Python", + "lines": 350, + "truncated": false, + "block": 1, + "row": 8689 + }, + { + "path": "openfe/tests/protocols/openmm_ahfe/test_ahfe_protocol.py", + "sha256": "a0b507683d2bcf55dd040faa61d4e54facb8bbedb8af486f16af93891351a20f", + "language": "Python", + "lines": 845, + "truncated": false, + "block": 1, + "row": 9605 + }, + { + "path": "openfe/tests/protocols/openmm_ahfe/test_ahfe_settings.py", + "sha256": "69580b9c43d4b779a049c5e617710c8262ed467ffcb37b617430a4360b90ed33", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 1, + "row": 6176 + }, + { + "path": "openfe/tests/protocols/openmm_ahfe/test_ahfe_slow.py", + "sha256": "10c32b7bdcc1e9db33fb8a00a1515b8fbba1012686a075cc24b5eb804e8b170c", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 1, + "row": 7156 + }, + { + "path": "openfe/tests/protocols/openmm_ahfe/test_ahfe_tokenization.py", + "sha256": "a7f6c8f32c9cfcbc7568b8a6364de537e80895aa347f1403d33424376ce64279", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 1, + "row": 6885 + }, + { + "path": "openfe/tests/protocols/openmm_ahfe/test_ahfe_validation.py", + "sha256": "f30972621864abf2f5176fcbc622c069ab88c5d521f7b906dda44dcc31b3b1ac", + "language": "Python", + "lines": 327, + "truncated": false, + "block": 1, + "row": 8652 + }, + { + "path": "openfe/tests/protocols/openmm_md/test_plain_md_protocol.py", + "sha256": "9846286651b10b45bc2446aef1d854c8779893e5d9d90b52229cb9649d79d56d", + "language": "Python", + "lines": 572, + "truncated": false, + "block": 1, + "row": 9256 + }, + { + "path": "openfe/tests/protocols/openmm_md/test_plain_md_slow.py", + "sha256": "6663048878fa302fe78e6fdaaec583eae2fdb56d0eda0a5315c447959974a06f", + "language": "Python", + "lines": 146, + "truncated": false, + "block": 1, + "row": 7338 + }, + { + "path": "openfe/tests/protocols/openmm_md/test_plain_md_tokenization.py", + "sha256": "854896b0931b540a84d9842628c8dc074c947021ddc19cc17e476df0ace97f1a", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 1, + "row": 6357 + }, + { + "path": "openfe/tests/protocols/openmm_rfe/helpers.py", + "sha256": "2425dd03519077e55a2834f58f9ea9605fe79dec783621c65d81bec044b65bc4", + "language": "Python", + "lines": 206, + "truncated": false, + "block": 1, + "row": 8210 + }, + { + "path": "openfe/tests/protocols/openmm_rfe/test_hybrid_factory.py", + "sha256": "6215a16af19874ecd1dc1aee0f13ffe734187dd181f971f43d08d7629c8681fa", + "language": "Python", + "lines": 230, + "truncated": false, + "block": 1, + "row": 8479 + }, + { + "path": "openfe/tests/protocols/openmm_rfe/test_hybrid_top_protocol.py", + "sha256": "1d8c400d236dce6ae47fb7573cbc53a8fb617459aa2c615207837e50111e785c", + "language": "Python", + "lines": 2326, + "truncated": false, + "block": 1, + "row": 9845 + }, + { + "path": "openfe/tests/protocols/openmm_rfe/test_hybrid_top_slow.py", + "sha256": "5c58db5b72d99090be38f21acdf591da0ccbbac569a6bcced05dd6d1ffde01e5", + "language": "Python", + "lines": 185, + "truncated": false, + "block": 1, + "row": 7917 + }, + { + "path": "openfe/tests/protocols/openmm_rfe/test_hybrid_top_tokenization.py", + "sha256": "f1a68190d993a77eb51542649eb66459693f0334810051255d166509eacb9172", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 1, + "row": 6790 + }, + { + "path": "openfe/tests/protocols/openmm_septop/test_septop_protocol.py", + "sha256": "145e1d3cfa935f0b8d65c1700e50c90885dfe878c717bb8f23e4aa5e648b6bcf", + "language": "Python", + "lines": 1499, + "truncated": false, + "block": 1, + "row": 9786 + }, + { + "path": "openfe/tests/protocols/openmm_septop/test_septop_slow.py", + "sha256": "a4558414961fd88f9057b95f789c63b09627f75e069175c4cef17ae5b9cc6db1", + "language": "Python", + "lines": 338, + "truncated": false, + "block": 1, + "row": 8869 + }, + { + "path": "openfe/tests/protocols/openmm_septop/test_septop_tokenization.py", + "sha256": "b93630d05b49b046889ba40cc9050ac8b405f2737830f2c449fc9908ee404a30", + "language": "Python", + "lines": 168, + "truncated": false, + "block": 1, + "row": 7351 + }, + { + "path": "openfe/tests/protocols/openmm_septop/test_septop_utils.py", + "sha256": "fe15fa80337d6aa59c57888b092f095af9e786ddbc0efb4f2c8d43bab8994153", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 1, + "row": 6637 + }, + { + "path": "openfe/tests/protocols/restraints/test_geometry_base.py", + "sha256": "000e0ccf5cb083cecb554e1c83fb75295a768e9245cb9d6f0bff29e47f0b7ac3", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 1, + "row": 5528 + }, + { + "path": "openfe/tests/protocols/restraints/test_geometry_boresch.py", + "sha256": "f5bbf6ec4363513323b8303883e9eeaa328155818a2195fc531b9603d1bc5a5f", + "language": "Python", + "lines": 356, + "truncated": false, + "block": 1, + "row": 8964 + }, + { + "path": "openfe/tests/protocols/restraints/test_geometry_boresch_guest.py", + "sha256": "67e53a95314c4fd8d96e350d5e46d89f6b8bb782b1f1b5e76192d9baecf3e0df", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 1, + "row": 7031 + }, + { + "path": "openfe/tests/protocols/restraints/test_geometry_boresch_host.py", + "sha256": "6832a3eef5973a4c48f174ae0c63854585dcfcf1f7737d227bd88a27dded262b", + "language": "Python", + "lines": 444, + "truncated": false, + "block": 1, + "row": 9149 + }, + { + "path": "openfe/tests/protocols/restraints/test_geometry_flatbottom.py", + "sha256": "badd1a4ffb5d0a1f3695c0586631e3c2c581090dab6c20d6a17bdaf1afbbff87", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 1, + "row": 6924 + }, + { + "path": "openfe/tests/protocols/restraints/test_geometry_harmonic.py", + "sha256": "9ac6655dcc40ae739edb30d08e12fb3a7ecc6e507b50a08561c248469564b746", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 1, + "row": 6878 + }, + { + "path": "openfe/tests/protocols/restraints/test_geometry_utils.py", + "sha256": "47b58a064ffca63cb68844cb7e6ea5c423b9547402676cd16b30ad72a40740db", + "language": "Python", + "lines": 634, + "truncated": false, + "block": 1, + "row": 9327 + }, + { + "path": "openfe/tests/protocols/restraints/test_omm_restraints.py", + "sha256": "26dc380b7588a747726034262dcb5819dbaa6228ecb44d8d5526b09115b1233d", + "language": "Python", + "lines": 352, + "truncated": false, + "block": 1, + "row": 9001 + }, + { + "path": "openfe/tests/protocols/restraints/test_openmm_forces.py", + "sha256": "c8e8fa59363fba4333fe34ff588e4e5a33dca1bf5befd18ab23aaad7d216aa76", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 1, + "row": 7130 + }, + { + "path": "openfe/tests/protocols/restraints/test_settings.py", + "sha256": "98c8ca8a5808d170297739e2ac14a2428f73622ad07977b14c33da666fdb516d", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 1, + "row": 6825 + }, + { + "path": "openfe/tests/protocols/test_openmm_settings.py", + "sha256": "5dde301fa02e040e5b46c5f3c0ef9d98b0b3901ddf86055f0703b5e170f136f3", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 1, + "row": 7015 + }, + { + "path": "openfe/tests/protocols/test_openmmutils.py", + "sha256": "4081875283f3a8362a5aaa13ad15d48a39aad7dbb918198f2dff7e0f4b99b4c4", + "language": "Python", + "lines": 1055, + "truncated": false, + "block": 1, + "row": 9687 + }, + { + "path": "openfe/tests/setup/alchemical_network_planner/edge_types.py", + "sha256": "e7f4f79e440be803a16eda133c8e3a3e31206505586f9f98b222065fea78c6ea", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 1, + "row": 5842 + }, + { + "path": "openfe/tests/setup/alchemical_network_planner/test_relative_alchemical_network_planner.py", + "sha256": "aaa708cd6f3ef1194d3117bdd5680be3233f7d778923b746d6bc75edac443273", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 1, + "row": 7700 + }, + { + "path": "openfe/tests/setup/atom_mapping/conftest.py", + "sha256": "3838625ec910f971369cedf052898da0b8c62c5e57170b29323137175eaba725", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 1, + "row": 6309 + }, + { + "path": "openfe/tests/setup/atom_mapping/test_atommapper.py", + "sha256": "9bb6938911c5e7f4d93a27b48de3b98285dbbe62058d8403d60b8b8a7babbe80", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 1, + "row": 6209 + }, + { + "path": "openfe/tests/setup/atom_mapping/test_lomap_atommapper.py", + "sha256": "a3d5412d17c56f2047deffbc1bbc906fa73eea5511ec9e262a86c160fc8a2fe5", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 1, + "row": 7017 + }, + { + "path": "openfe/tests/setup/atom_mapping/test_lomap_scorers.py", + "sha256": "5c31ec935fa06d1af090e60146525ffc86d0a3671ee3b155583fa4fe693cf5c5", + "language": "Python", + "lines": 346, + "truncated": false, + "block": 1, + "row": 8576 + }, + { + "path": "openfe/tests/setup/atom_mapping/test_perses_atommapper.py", + "sha256": "81efebeb55b44d584361295cedfb9d29073a87a1d5f2ef7aa2bc1bc8f10f58eb", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 1, + "row": 6359 + }, + { + "path": "openfe/tests/setup/atom_mapping/test_perses_scorers.py", + "sha256": "6a8c1bcef9fb5d56cd68343a65c6bca734d27cf2305c5137dea69ff198941f7a", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 1, + "row": 6926 + }, + { + "path": "openfe/tests/setup/chemicalsystem_generator/component_checks.py", + "sha256": "68b34dffc09d7fe43fc5abc64be7929525e481bb4190da6f436f235d9b73cfd9", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 1, + "row": 5535 + }, + { + "path": "openfe/tests/setup/chemicalsystem_generator/test_easy_chemicalsystem_generator.py", + "sha256": "7d2b87f731815019fe847033c1508656de2cdd8761e93acf970df5b9ca1a84fd", + "language": "Python", + "lines": 128, + "truncated": false, + "block": 1, + "row": 7460 + }, + { + "path": "openfe/tests/setup/test_network_planning.py", + "sha256": "4c0d0ff1229a71ad7042b980352434dfb75b50b0b3e47656f84915bafbd0cabc", + "language": "Python", + "lines": 779, + "truncated": false, + "block": 1, + "row": 9595 + }, + { + "path": "openfe/tests/storage/conftest.py", + "sha256": "d4cc3d975057a8e9992def18008457f369d4985845fe955326eeb7f95616502a", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 1, + "row": 6968 + }, + { + "path": "openfe/tests/storage/test_metadatastore.py", + "sha256": "be29f8fa4222d5cffe8f565a45217d9a05ab8f79a198a52150213511e7184b44", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 1, + "row": 7541 + }, + { + "path": "openfe/tests/storage/test_resultclient.py", + "sha256": "e5452d584a4edae0b3da4ff30578aa25ea4be106f84cc6e1c93f09a305220e71", + "language": "Python", + "lines": 304, + "truncated": false, + "block": 1, + "row": 8587 + }, + { + "path": "openfe/tests/storage/test_resultserver.py", + "sha256": "0148a731611f38572d0c15350faf59806121d2c310fe10dc5f32fb28ab478969", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 1, + "row": 7317 + }, + { + "path": "openfe/tests/utils/conftest.py", + "sha256": "222f499f5fa4915b09f6a976fb2464a85472c2610b1688d7c13502b7ef3f684e", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 1, + "row": 6184 + }, + { + "path": "openfe/tests/utils/test_atommapping_network_plotting.py", + "sha256": "80bcccb04a188d8825fc7585c79af86f058931bab9401c5287fee15d00baa978", + "language": "Python", + "lines": 188, + "truncated": false, + "block": 1, + "row": 7829 + }, + { + "path": "openfe/tests/utils/test_duecredit.py", + "sha256": "42f57a6451f5d9077ae22e2cfb4d597d0a7d96dc8926debf7dbe3dee80f56be4", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 1, + "row": 6334 + }, + { + "path": "openfe/tests/utils/test_log_control.py", + "sha256": "5df4358972d7b882a7150b54eeaa33632e7fa5dec1270d4b3fc68425eb2c4d74", + "language": "Python", + "lines": 518, + "truncated": false, + "block": 1, + "row": 9165 + }, + { + "path": "openfe/tests/utils/test_network_plotting.py", + "sha256": "e3a745ea7e2118bbbe2d0fed45044fe6f07689f197527fe699d04163ca0a7025", + "language": "Python", + "lines": 567, + "truncated": false, + "block": 1, + "row": 9321 + }, + { + "path": "openfe/tests/utils/test_optional_imports.py", + "sha256": "bedaf0fa423b5e7095b825f17ff049b9fe29b527ba7bb1dc7f6ada92a1614108", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5268 + }, + { + "path": "openfe/tests/utils/test_remove_oechem.py", + "sha256": "809d40efb7af1da5dab95c1bb26dd34b1e58b199da59a1653156dcfe9ccc4216", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5570 + }, + { + "path": "openfe/tests/utils/test_system_probe.py", + "sha256": "90de47b5e432c9140d959ab2d8b212e5cbca455712de8f1d70b2a04cfae11aae", + "language": "Python", + "lines": 488, + "truncated": false, + "block": 1, + "row": 9144 + }, + { + "path": "openfe/tests/utils/test_visualization_3D.py", + "sha256": "b9778f8749e6c351c4638f89ee1b437f6bc20b50f32e1b5c42f329cad77a7e4a", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 1, + "row": 6273 + }, + { + "path": "openfe/utils/__init__.py", + "sha256": "82027ddc6d1cc6b0e4d72c80886e0d001ee2f2ef12fd1f415332dca73db7f0e9", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 1, + "row": 5239 + }, + { + "path": "openfe/utils/atommapping_network_plotting.py", + "sha256": "b470061984186081d40cb056fb44196ee41dcf1cbd4e37ed80bff25af62896ee", + "language": "Python", + "lines": 172, + "truncated": false, + "block": 1, + "row": 7636 + }, + { + "path": "openfe/utils/custom_typing.py", + "sha256": "c1b3f050034f3bf3e8e56aad1d29c6c96c414231bca86972f03e0150113e10c4", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 1, + "row": 5438 + }, + { + "path": "openfe/utils/ligand_utils.py", + "sha256": "ecb5f9f130b91e97dd015f0a48438bf439b11d48802b9cc1192c6c15b46e193b", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 1, + "row": 5482 + }, + { + "path": "openfe/utils/logging_control.py", + "sha256": "fa6fc9f661eb566d688ac8ebac87f6668dc6e0ca426cec475ae7480462f7a5a5", + "language": "Python", + "lines": 171, + "truncated": false, + "block": 1, + "row": 7354 + }, + { + "path": "openfe/utils/network_plotting.py", + "sha256": "8fce7ef080d200c577d5fef9fd55827dd9c0d33398635eae6f17fb030ec781a6", + "language": "Python", + "lines": 426, + "truncated": false, + "block": 1, + "row": 9061 + }, + { + "path": "openfe/utils/optional_imports.py", + "sha256": "b4fb7ba575ad678cb2ce922bff5364a91233fcbb48988a5001f20e7f408f1310", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 1, + "row": 5848 + }, + { + "path": "openfe/utils/remove_oechem.py", + "sha256": "3dd0ee793a50e324e7058223211dbcbc12d57a939bd4848b9ddc1e02003fcbd7", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 1, + "row": 5753 + }, + { + "path": "openfe/utils/silence_root_logging.py", + "sha256": "5747f4a5385b37786f5d7dcc703e21686ca7875f6fa2cedf989f3a53edd31450", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 1, + "row": 5449 + }, + { + "path": "openfe/utils/system_probe.py", + "sha256": "9f182d722c16dd5ee4dad0b44742061c020d01370b9c2d980c3493857cf91901", + "language": "Python", + "lines": 545, + "truncated": false, + "block": 1, + "row": 9218 + }, + { + "path": "openfe/utils/visualization_3D.py", + "sha256": "54e7bf0d83d95a88d448872bda7a92fa0c620d14d9e23d74638ac8a2adeffef8", + "language": "Python", + "lines": 239, + "truncated": false, + "block": 1, + "row": 7985 + }, + { + "path": "openfecli/__init__.py", + "sha256": "2cdbf0a7b50ee4740a3a3488c12671898618dbd654211750b9d9b7aaa14080d2", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 1, + "row": 5195 + }, + { + "path": "openfecli/cli.py", + "sha256": "950be40e42df1035ee9781f20ada5477bb86014b370fb464799ab2dda36a5039", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 1, + "row": 5986 + }, + { + "path": "openfecli/clicktypes/__init__.py", + "sha256": "a9bd1443970761e04d984afcaec7d7f4edb776610e890aa270158d964c20b8c6", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 5008 + }, + { + "path": "openfecli/clicktypes/hyphenchoice.py", + "sha256": "82db081c1d63bca449c1183aff51d9380abcfb0c3070be2764da598412deae73", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 1, + "row": 5347 + }, + { + "path": "openfecli/commands/atommapping.py", + "sha256": "ac887b6aa9fd77e99df84026e85d1488dfd2acff857bec07129c7a1a6e034a67", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 1, + "row": 6884 + }, + { + "path": "openfecli/commands/fetch.py", + "sha256": "16180d8a98f6adca44cf3beb54fec349ab88b804a36af728831d9bb841a71c63", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 1, + "row": 6170 + }, + { + "path": "openfecli/commands/gather.py", + "sha256": "54ea471897bdda2cc9f70acdfa3c4baf19ac5f81a2ad5f4fa538b8ada5011f1a", + "language": "Python", + "lines": 812, + "truncated": false, + "block": 1, + "row": 9579 + }, + { + "path": "openfecli/commands/gather_abfe.py", + "sha256": "bb4fbea14bf361d7bf706ee39770cd7e79016021b8fd1d47c6a642b2d9e00407", + "language": "Python", + "lines": 343, + "truncated": false, + "block": 1, + "row": 8676 + }, + { + "path": "openfecli/commands/gather_septop.py", + "sha256": "c570dd00ad5b66175053e60159e1fcb0d67dee3c9fa8da9c11a65817db21131a", + "language": "Python", + "lines": 433, + "truncated": false, + "block": 1, + "row": 8947 + }, + { + "path": "openfecli/commands/generate_partial_charges.py", + "sha256": "64c89b29ff1547c70c88f99d28d32d6a715c1b78a7c4bcc50770d1766936815a", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 1, + "row": 6866 + }, + { + "path": "openfecli/commands/plan_rbfe_network.py", + "sha256": "3ca46a6b776a58d3b689aceca7d62363da727bf8001660a403333254383d13ba", + "language": "Python", + "lines": 255, + "truncated": false, + "block": 1, + "row": 8408 + }, + { + "path": "openfecli/commands/plan_rhfe_network.py", + "sha256": "790d7a663f7e6898f99ec7ccf38ac63e69719688aa527f775bc77e58bce0a04c", + "language": "Python", + "lines": 220, + "truncated": false, + "block": 1, + "row": 8132 + }, + { + "path": "openfecli/commands/quickrun.py", + "sha256": "ad0309648acdad9820c73446879ef35d81219d04ca5b2945402bb72d54ab4a0f", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 1, + "row": 7431 + }, + { + "path": "openfecli/commands/test.py", + "sha256": "370a9b20ead8a86309f0c306a0dd89cd133aad806d40c6da59e0a2164bd1e3be", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 1, + "row": 5933 + }, + { + "path": "openfecli/commands/view_ligand_network.py", + "sha256": "80b9db0699c960bd40a3fa75b3ec67cbfa8a0ef5ab66369cd1d76a1d647f72c6", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 1, + "row": 5698 + }, + { + "path": "openfecli/fetchables.py", + "sha256": "55afe294be8b1d8774c0a3f22f3bc893ea9d16302520939205ba588a07af24ca", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 1, + "row": 5702 + }, + { + "path": "openfecli/fetching.py", + "sha256": "72771b72b9010e059538af4ad81de96c9ccaee7edfc79e548a3beead812e04d2", + "language": "Python", + "lines": 171, + "truncated": false, + "block": 1, + "row": 7403 + }, + { + "path": "openfecli/parameters/__init__.py", + "sha256": "c78da1755ed87c3d012f24cdb1c949537f80b92d248918810d8aa132119748c1", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 1, + "row": 5341 + }, + { + "path": "openfecli/parameters/mapper.py", + "sha256": "2ce2feaf215515bd1b2999c75042066373ad04b1dcf455d8dc64f566ffc9971b", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 1, + "row": 5680 + }, + { + "path": "openfecli/parameters/misc.py", + "sha256": "50ed4281006ee507e066f49fe8188032a1fff486415e8843c7db6e768cbac5c2", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 1, + "row": 5637 + }, + { + "path": "openfecli/parameters/mol.py", + "sha256": "50e223d8e5c292fe84716e0c2256694c2581fc27ad9943223fe389ddfe1ee02c", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 1, + "row": 6290 + }, + { + "path": "openfecli/parameters/molecules.py", + "sha256": "312e660f282cc86aa95ed8e8f0e95f0907db4cfaab8a3bcbc91056f0ca700127", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 1, + "row": 6502 + }, + { + "path": "openfecli/parameters/output.py", + "sha256": "d50bafd019bec262304aae87514dee99a2d4b6416d4dc9c387c01d997e8e5f83", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 1, + "row": 5301 + }, + { + "path": "openfecli/parameters/output_dir.py", + "sha256": "46074dc422c8957cba74c43b9f44ba2ba89e369270738117eeeb6e54fef4dd9f", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 1, + "row": 5288 + }, + { + "path": "openfecli/parameters/plan_network_options.py", + "sha256": "cd3446c99489aa05943c3ce27ff1d28772431054bd7cc0ca5d52c0974fa7a60d", + "language": "Python", + "lines": 278, + "truncated": false, + "block": 1, + "row": 8162 + }, + { + "path": "openfecli/parameters/protein.py", + "sha256": "a2000256c1a5ec19e983327ab1a6a6fdc81b60e53030cd0a85a690aecf5194a1", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 1, + "row": 5912 + }, + { + "path": "openfecli/parameters/utils.py", + "sha256": "f739844e4f7833ea28a08f3467c0c24f10e0372dfac7dce2841857c2b6185072", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 1, + "row": 5639 + }, + { + "path": "openfecli/plan_alchemical_networks_utils.py", + "sha256": "342d6a562eb82d238618e9c8a8dd382494d207178c74d5c780b16252710b1e02", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 1, + "row": 5884 + }, + { + "path": "openfecli/plugins.py", + "sha256": "84debd1bec0df4ef1b10d8448d48489b3fb86495e778622769278706036a3edb", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 1, + "row": 5364 + }, + { + "path": "openfecli/tests/clicktypes/test_hyphenchoice.py", + "sha256": "841a3e9c8b2ed6d59a4f16cedf28a5cfad007662aca04aed3250ec4a3fded746", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5465 + }, + { + "path": "openfecli/tests/commands/conftest.py", + "sha256": "ff64cf57f0bc5b9366f0357aef0e2051ca6f7675e9d5d07be7b18c635304e701", + "language": "Python", + "lines": 423, + "truncated": false, + "block": 1, + "row": 9712 + }, + { + "path": "openfecli/tests/commands/test_atommapping.py", + "sha256": "42083943fc88891ec657ef241f678788f1f2e60100f887b87607101888874174", + "language": "Python", + "lines": 130, + "truncated": false, + "block": 1, + "row": 7269 + }, + { + "path": "openfecli/tests/commands/test_charge_generation.py", + "sha256": "9eb02ba45128cd90304a5b91d6a4f0e1eafb3bd5ef7d0a0c9ae340289809be2e", + "language": "Python", + "lines": 153, + "truncated": false, + "block": 1, + "row": 7506 + }, + { + "path": "openfecli/tests/commands/test_gather.py", + "sha256": "7689be90ebcb81092b4e1bc4fef8deaaf9dee91f359e9d97882317582279fa0b", + "language": "Python", + "lines": 519, + "truncated": false, + "block": 1, + "row": 9338 + }, + { + "path": "openfecli/tests/commands/test_ligand_network_viewer.py", + "sha256": "0bf5be618a2bb9bfd23373568a87705b6e78bc4951be9eab57e18ff7214fd8fd", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 1, + "row": 5582 + }, + { + "path": "openfecli/tests/commands/test_plan_rbfe_network.py", + "sha256": "3e304ffa093d2b495e0f8ba2acfa303090bed944f4d9c62497962ce2f9eb9868", + "language": "Python", + "lines": 434, + "truncated": false, + "block": 1, + "row": 8979 + }, + { + "path": "openfecli/tests/commands/test_plan_rhfe_network.py", + "sha256": "1eb3f7faec5e2b2d0343493391b4e28915fca7a623ae7beed97e1134b4111d69", + "language": "Python", + "lines": 241, + "truncated": false, + "block": 1, + "row": 8098 + }, + { + "path": "openfecli/tests/commands/test_quickrun.py", + "sha256": "4aabfb177742ec58558ad5f4f0a31d401475a2737165e7210503b9170dbfb576", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 1, + "row": 6850 + }, + { + "path": "openfecli/tests/commands/test_test.py", + "sha256": "592fd4a1040adeb5516b6e49bccb5cfd41c6bc02ac7199c7ab786dd5ab191305", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 1, + "row": 5638 + }, + { + "path": "openfecli/tests/conftest.py", + "sha256": "81f2918d2321e9138f0f1f15bf475a1461c09c312c151fac2b5dbe58fde923f1", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 1, + "row": 5150 + }, + { + "path": "openfecli/tests/dev/write_transformation_json.py", + "sha256": "9b6b0af8bd11edd52093126a5071ab37207c3bddda5194dd7d4751d51af4fdd7", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 1, + "row": 6172 + }, + { + "path": "openfecli/tests/parameters/test_mapper.py", + "sha256": "6a1f59251cfd8bc0f677a908e250b20c909c9a0e24bc8771c7e56fc858b2982f", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 1, + "row": 5394 + }, + { + "path": "openfecli/tests/parameters/test_mol.py", + "sha256": "dfbb61196c155e3a1099d30d0b37a764b7065116be673e1b930a95641423e261", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 5814 + }, + { + "path": "openfecli/tests/parameters/test_molecules.py", + "sha256": "49f6ed1b5933aeb68034f64456e862dead0b34d7350a1070b6dc90ffc19ff674", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 1, + "row": 6105 + }, + { + "path": "openfecli/tests/parameters/test_output.py", + "sha256": "813f19a1fec91ab5cddef6511a8bdf803fcca04403a006f3d5574cac98d1533f", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5346 + }, + { + "path": "openfecli/tests/parameters/test_output_dir.py", + "sha256": "741021efa7fe75b86e27b9ff59c3027e1e70a744400bf9776bcd5a5c329d39b1", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 1, + "row": 5257 + }, + { + "path": "openfecli/tests/parameters/test_plan_network_options.py", + "sha256": "c903535a916b9859ae66b50db21117d73d0276d978653906e96d078c12ca2148", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 1, + "row": 6378 + }, + { + "path": "openfecli/tests/parameters/test_protein.py", + "sha256": "3cd1e617abe4be8c422e5d1ac6cbe8c3c1754bf1d320de18e6f3d233844997a4", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 1, + "row": 5548 + }, + { + "path": "openfecli/tests/parameters/test_utils.py", + "sha256": "1b6adfb681d7494bbb630bdbb244a970ee2afd7a5d6210ee52bc1249a2f1fb9a", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 1, + "row": 5370 + }, + { + "path": "openfecli/tests/test_cli.py", + "sha256": "382211af0a1e95727b3ced854156129ef04ead09f6a2936e746eb735497e0445", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 1, + "row": 6832 + }, + { + "path": "openfecli/tests/test_fetchables.py", + "sha256": "e36b5342549901af664e6f0a61edeb9aa26be47bfb101ff742c701c599a51166", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 1, + "row": 5778 + }, + { + "path": "openfecli/tests/test_fetching.py", + "sha256": "0f75af0f0fe066cb86d882012148caebca31c718796c462f09cd8cb80f989c7a", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 1, + "row": 6556 + }, + { + "path": "openfecli/tests/test_plugins.py", + "sha256": "eb79004e958479667db87511a129055729984a074fe711136ad3fa6706022c99", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 1, + "row": 5536 + }, + { + "path": "openfecli/tests/test_rbfe_tutorial.py", + "sha256": "c34f43df896ab59dcb7cc2e000157abbd552872deb0389e53218c469b47bf4bb", + "language": "Python", + "lines": 148, + "truncated": false, + "block": 1, + "row": 7493 + }, + { + "path": "openfecli/tests/test_utils.py", + "sha256": "85bdc6f3dee589f2697fbbe855410841e50b1225bad1fac6194a3dfd78295da3", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 1, + "row": 6710 + }, + { + "path": "openfecli/tests/utils.py", + "sha256": "dd2646bb8c0ba13688365c3d1cdc4d4216523484d85a318810f5add2332aaf13", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5399 + }, + { + "path": "openfecli/utils.py", + "sha256": "54c8e6a7d148d31940ff081e5ee04aee2ea3cc4002477db13d49aa216dfdd5fc", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 1, + "row": 6917 + } + ] +} \ No newline at end of file diff --git a/manifests/5f/github.com__kyllev__noclame.json b/manifests/5f/github.com__kyllev__noclame.json new file mode 100644 index 0000000000000000000000000000000000000000..38574d1e86a9e133204b27e7354ffae4e1b46a73 --- /dev/null +++ b/manifests/5f/github.com__kyllev__noclame.json @@ -0,0 +1,48 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/kyllev/noclame", + "url": "https://github.com/KylleV/noclame", + "host": "github.com", + "commit": "b91def2a76a016618123e574229c9feee06edf24", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "6df351dbf936318c0fb7a3b955526eb34bbdb1b31218789ab942c489e2ebb8a0", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2148 + }, + { + "path": "README.md", + "sha256": "39cb28cd9ebb023d922427ebf5805c102eee450f72ffbf20c46599f2f8bc6f7c", + "language": "Text", + "lines": 166, + "truncated": false, + "block": 1, + "row": 11949 + }, + { + "path": "src/noclame/__init__.py", + "sha256": "16e3337316ce2f0e55da7b033f41632958f0863eb818588bb715a3ae5b80e071", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 1, + "row": 5867 + }, + { + "path": "src/noclame/noclame.py", + "sha256": "90846a3be3ec95ec40630a65812c38db3d4a60ebeb9f74e2e415e68c4d6e253c", + "language": "Python", + "lines": 763, + "truncated": false, + "block": 1, + "row": 9600 + } + ] +} \ No newline at end of file diff --git a/manifests/5f/github.com__naokitomita1221__rinami_protein_science.json b/manifests/5f/github.com__naokitomita1221__rinami_protein_science.json new file mode 100644 index 0000000000000000000000000000000000000000..124b027a389e38a568daa48d0a81fb39c057f2a9 --- /dev/null +++ b/manifests/5f/github.com__naokitomita1221__rinami_protein_science.json @@ -0,0 +1,273 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/naokitomita1221/rinami_protein_science", + "url": "https://github.com/NaokiTOMITA1221/RINAMI_PROTEIN_SCIENCE.git", + "host": "github.com", + "commit": "4ebcc24ae57d1f3ef991d7e289ed100b622c1f38", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "c71d239df91726fc519c6eb72d318ec65820627232b2f796219e87dcf35d0ab4", + "language": "License", + "lines": 201, + "truncated": false, + "block": 1, + "row": 2216 + }, + { + "path": "README.md", + "sha256": "8c0972cab4c4d32230cdca7242d141b88b97bda3a0b3e1271c6f4261702ab948", + "language": "Text", + "lines": 190, + "truncated": false, + "block": 1, + "row": 11968 + }, + { + "path": "RINAMI/Baseline_RINAMI_model_main.py", + "sha256": "365e15525ef4ce8e68ddc53384203af417c49ac82d6337dcecef7be3d4079b74", + "language": "Python", + "lines": 178, + "truncated": false, + "block": 1, + "row": 7914 + }, + { + "path": "RINAMI/RINAMI_model_main.py", + "sha256": "f054187e8a6336675d1ca2d436aaa96933b37c296f2c9c8746ef5350404b5e45", + "language": "Python", + "lines": 206, + "truncated": false, + "block": 1, + "row": 8097 + }, + { + "path": "RINAMI/RINAMI_train_and_test.py", + "sha256": "b018d709726f0dd20674ca6b0e72011376455494582f83893eaa4140df8a57b2", + "language": "Python", + "lines": 554, + "truncated": false, + "block": 1, + "row": 9291 + }, + { + "path": "RINAMI/modules.py", + "sha256": "d1a6657ad483c57b2d277fb79a90a26a6e18b6bf7b9360d7e2a5045517dc5750", + "language": "Python", + "lines": 248, + "truncated": false, + "block": 1, + "row": 8401 + }, + { + "path": "RINAMI/test_Baseline_RINAMI.sh", + "sha256": "981fe781e3e19cc7912b0d0040086484be71c78c52b71418abbac13c3bba0eb6", + "language": "Shell", + "lines": 59, + "truncated": false, + "block": 1, + "row": 11665 + }, + { + "path": "RINAMI/train_RINAMI.sh", + "sha256": "ee47af53d422b8f8a6aeae928a089abafe2f6f82e3aa6713dc6a7ad650a67a27", + "language": "Shell", + "lines": 69, + "truncated": false, + "block": 1, + "row": 11678 + }, + { + "path": "RINAMI/util.py", + "sha256": "151d0ad59df280abbcdc5a57be9278865448c09ff1da0308a1582b13274ec328", + "language": "Python", + "lines": 1402, + "truncated": false, + "block": 1, + "row": 9764 + }, + { + "path": "scripts/ProteinMPNN_to_get_emb/helper_scripts/assign_fixed_chains.py", + "sha256": "3402950dae8e65fa1800f1211ead9db9ede56aa0d599c186994262a30fc1ba81", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 6023 + }, + { + "path": "scripts/ProteinMPNN_to_get_emb/helper_scripts/make_bias_AA.py", + "sha256": "c74b570c104b9e58722361cdd681e96408d9af0d1ea05a78b73672a71cb25754", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 1, + "row": 5597 + }, + { + "path": "scripts/ProteinMPNN_to_get_emb/helper_scripts/make_bias_per_res_dict.py", + "sha256": "7af21ab1a59c0a2f1dc044a1f9b609a57bdddb06714a00640b1dd0c527e748a5", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 1, + "row": 6235 + }, + { + "path": "scripts/ProteinMPNN_to_get_emb/helper_scripts/make_fixed_positions_dict.py", + "sha256": "31b7cea547cda162ed1ddb0e341906b6e84e0ca4061dae5c6dddeca3eb6053ef", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 1, + "row": 6657 + }, + { + "path": "scripts/ProteinMPNN_to_get_emb/helper_scripts/make_pos_neg_tied_positions_dict.py", + "sha256": "97736a00601ae54433fc074950b79ee661901c2fd8dc3d542ce2f5023811370c", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 1, + "row": 7727 + }, + { + "path": "scripts/ProteinMPNN_to_get_emb/helper_scripts/make_pssm_input_dict.py", + "sha256": "dd8f8785f6360e23b0358fe781274d5a2a96d68b4b51ac0f15a906672df9f32f", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 1, + "row": 6138 + }, + { + "path": "scripts/ProteinMPNN_to_get_emb/helper_scripts/make_tied_positions_dict.py", + "sha256": "3d9b3cece5d61faf7cdacac49d33fc8a16cc5e54f103b76218c8ce5b1b6b4e0f", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 1, + "row": 7405 + }, + { + "path": "scripts/ProteinMPNN_to_get_emb/helper_scripts/other_tools/make_omit_AA.py", + "sha256": "a84eb412c6d916befb0aa7190915408ea43185ad0c822aff3123ad48c35a2616", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 6398 + }, + { + "path": "scripts/ProteinMPNN_to_get_emb/helper_scripts/other_tools/make_pssm_dict.py", + "sha256": "3e1cd315602c0221f303ea95a12b44527a2b5de181ce085ec66397c92ebc2ae5", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 1, + "row": 6405 + }, + { + "path": "scripts/ProteinMPNN_to_get_emb/helper_scripts/parse_multiple_chains.py", + "sha256": "3d68c7fcc37c0763c42bfaf6099b4b2f5dd30710f9870b6b38d7a9e1ac18b790", + "language": "Python", + "lines": 163, + "truncated": false, + "block": 1, + "row": 7726 + }, + { + "path": "scripts/ProteinMPNN_to_get_emb/helper_scripts/parse_multiple_chains.sh", + "sha256": "dea7c51f307a9547e78fcca147ff3c6a71efa7c1b312aa2317dcb6c69b6f3a10", + "language": "Shell", + "lines": 7, + "truncated": false, + "block": 1, + "row": 11140 + }, + { + "path": "scripts/ProteinMPNN_to_get_emb/protein_mpnn_run.py", + "sha256": "61f2c519a7f73fa12da9eb90da97b97ec2f8d5f31d42605639c7600cbd321cbe", + "language": "Python", + "lines": 469, + "truncated": false, + "block": 1, + "row": 9588 + }, + { + "path": "scripts/ProteinMPNN_to_get_emb/protein_mpnn_utils.py", + "sha256": "08e8c913ed55d015936f744215315edd29c21f84a45b98dcea9bd1d540fee1cc", + "language": "Python", + "lines": 1385, + "truncated": false, + "block": 1, + "row": 9821 + }, + { + "path": "scripts/model_utils.py", + "sha256": "20d941bd3e1b94c150a267609c237ee0c920df5dadaa2ce682c5ddb20482bbbe", + "language": "Python", + "lines": 512, + "truncated": false, + "block": 1, + "row": 9405 + }, + { + "path": "scripts/pdb_to_mpnn_node_rep.py", + "sha256": "a1b90ef48bfa96b6a4cec8dd91c5bdac93c154f071777ce9fcce3c20ab59e8a3", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 1, + "row": 6439 + }, + { + "path": "scripts/pdb_to_mpnn_output_profile.py", + "sha256": "78315fb5bf156f967536e291bbe6bbb541cdd04c4ed7f09afeaf908dee105bc3", + "language": "Python", + "lines": 192, + "truncated": false, + "block": 1, + "row": 7884 + }, + { + "path": "scripts/protein_mpnn_utils.py", + "sha256": "7af96222c4cdc4f16741f06ad1fb49fe5f5e1bde8b784cb8fd59f3b392f9e45e", + "language": "Python", + "lines": 212, + "truncated": false, + "block": 1, + "row": 7820 + }, + { + "path": "scripts/run_ESMFold_prediction.py", + "sha256": "8f943e932cc664d60614502dc94f716406e13dd4dfba252beebc29204c2bb5d4", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 1, + "row": 5850 + }, + { + "path": "scripts/run_inference_for_pdb_batch.py", + "sha256": "821361c246c7c6ecb121eaef44b4b328d91e96ac847ea3a5170b0971ba6fe42b", + "language": "Python", + "lines": 552, + "truncated": false, + "block": 1, + "row": 9211 + }, + { + "path": "scripts/run_inference_for_single_pdb.py", + "sha256": "603b0de92ee7435503ddb1357ee36edb956bddd5f15d935d61372846f2f588cb", + "language": "Python", + "lines": 465, + "truncated": false, + "block": 1, + "row": 9081 + } + ] +} \ No newline at end of file diff --git a/manifests/5f/zenodo__21416777.json b/manifests/5f/zenodo__21416777.json new file mode 100644 index 0000000000000000000000000000000000000000..f64d35331be389811ea529a352f634cb5cde3ef4 --- /dev/null +++ b/manifests/5f/zenodo__21416777.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:21416777", + "url": "10.5281/zenodo.21416777", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "2a7a20165cac3224baa031a0c7735098430ed24ac707560e6b99b37e11c3d476", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2155 + }, + { + "path": "R/01_PEP_Demo.R", + "sha256": "eff9bf1fbfbb19517bcc3c1968dac851b03fabd8f7b62d7a54238b1bd49e5e7e", + "language": "R", + "lines": 1794, + "truncated": false, + "block": 1, + "row": 10613 + }, + { + "path": "R/02_PEP_Demo_MachineLearning.R", + "sha256": "4e31077525a97d6964a8c5a13803adb2b1b04c5c97b7ab20d86ab2b5e990ad6d", + "language": "R", + "lines": 997, + "truncated": false, + "block": 1, + "row": 10600 + }, + { + "path": "R/compute_wri.R", + "sha256": "466932278d83d7579f5ee3882dc2b28a8f0f95a200c66c11d1414682824fbf45", + "language": "R", + "lines": 207, + "truncated": false, + "block": 1, + "row": 10381 + }, + { + "path": "README.md", + "sha256": "d0bfabf393abcd480794b62b8f99d086d962cda25fb8250269a63c8dbcc61513", + "language": "Text", + "lines": 116, + "truncated": false, + "block": 1, + "row": 11962 + } + ] +} \ No newline at end of file diff --git a/manifests/61/github.com__dcupolillo__roipy.json b/manifests/61/github.com__dcupolillo__roipy.json new file mode 100644 index 0000000000000000000000000000000000000000..78a2dae26b9180e3bf52288994f31f740a807fc3 --- /dev/null +++ b/manifests/61/github.com__dcupolillo__roipy.json @@ -0,0 +1,192 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/dcupolillo/roipy", + "url": "https://github.com/dcupolillo/ROIpy", + "host": "github.com", + "commit": "7f920ed31f0ec41ae27fd935c5519dd7ba9a0143", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "77b430b7dcab4f1591bba1e09b63ee44928d1a7f9ea17759b1ad5dd7d66885a6", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2104 + }, + { + "path": "README.md", + "sha256": "f8b1f051651b4b09314505cbe2fb36b08d7fb7610c6a5c6e92c9f0d8097004c1", + "language": "Text", + "lines": 159, + "truncated": false, + "block": 1, + "row": 11904 + }, + { + "path": "assets/palette.py", + "sha256": "bb1e4421a45e0d01f5b127802236e7f3467d7a8f02653d00def3345a71f9fba2", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 1, + "row": 6520 + }, + { + "path": "getting_started.py", + "sha256": "e107045b20a15ef193ba6cd0ee189bd786415e77239399c12ce0cd8cebe8fb59", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 1, + "row": 5897 + }, + { + "path": "src/ROIpy/GUIv2/canvas.py", + "sha256": "c09032cd39c21c44fd998d80b682e7d742375203d9b071aafdfd5c9ac0c61b05", + "language": "Python", + "lines": 379, + "truncated": false, + "block": 1, + "row": 8873 + }, + { + "path": "src/ROIpy/GUIv2/load_frame.py", + "sha256": "ffc6270eb285ff89496eb204d32f1635be05df678ed4d1e02e28dc1d0406ef86", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 1, + "row": 7096 + }, + { + "path": "src/ROIpy/GUIv2/main.py", + "sha256": "d906e79d340ce99e2a8943c558871c92ab2892822889f482351a5ac885d48149", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 1, + "row": 7050 + }, + { + "path": "src/ROIpy/GUIv2/plot_structures_controller.py", + "sha256": "e7c78c7e5e80ec9b92863f53d47cced50826f8278968c3e94a8a3f3a59668c36", + "language": "Python", + "lines": 212, + "truncated": false, + "block": 1, + "row": 7908 + }, + { + "path": "src/ROIpy/GUIv2/save_files.py", + "sha256": "ac16bcab08d8866b73739e55e2c36107bfabdc1cd434daa9abf330dc21f547f9", + "language": "Python", + "lines": 96, + "truncated": false, + "block": 1, + "row": 6733 + }, + { + "path": "src/ROIpy/GUIv2/scan_parameters.py", + "sha256": "f5a0c1b38e762c9918ab8b11afecfeb23755d0dbbb2ab5671ec5bd5f667474b8", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 1, + "row": 7521 + }, + { + "path": "src/ROIpy/__init__.py", + "sha256": "8ad018155ba890d782a943cc687099d5796ebfc30fb7bc2d117603d95cc0807f", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 1, + "row": 5771 + }, + { + "path": "src/ROIpy/analysis/savejson.py", + "sha256": "2f1e0ec377f4767a3457deda3170b093d35d43b77b58f2dfe5cbbd2cc4e06181", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 1, + "row": 5894 + }, + { + "path": "src/ROIpy/analysis/stats.py", + "sha256": "81fb8aeb1040a39684afe3e6ba18edaaa7734b2878794b42a0494c452f467241", + "language": "Python", + "lines": 522, + "truncated": false, + "block": 1, + "row": 9105 + }, + { + "path": "src/ROIpy/core/bundles.py", + "sha256": "860e334705b6afee2f02ced3f5008074d58b3a7f230727ca4a3db5cd3050c0aa", + "language": "Python", + "lines": 635, + "truncated": false, + "block": 1, + "row": 9263 + }, + { + "path": "src/ROIpy/core/components.py", + "sha256": "6165cbcea249c264ae31e873057522425bfe5c7088b875211f8bf3b0ea018fe6", + "language": "Python", + "lines": 624, + "truncated": false, + "block": 1, + "row": 9296 + }, + { + "path": "src/ROIpy/core/makeroi/make_roi.py", + "sha256": "804d856f2b14ab23d20f876a0af4e5ec0e11db1753833382f91994805bec45e0", + "language": "Python", + "lines": 1863, + "truncated": false, + "block": 1, + "row": 9803 + }, + { + "path": "src/ROIpy/core/makeroi/roi_file.py", + "sha256": "f8d4ac42e7cf4aefff4209eeb5808bda143c029e684b603b46971bda0d75e5f1", + "language": "Python", + "lines": 357, + "truncated": false, + "block": 1, + "row": 8597 + }, + { + "path": "src/ROIpy/core/structures.py", + "sha256": "90cb355400072c8aae0a2e19e8f27b75d7b0ee33d4bcb2141ce1fdde9e411fc8", + "language": "Python", + "lines": 616, + "truncated": false, + "block": 1, + "row": 9315 + }, + { + "path": "src/ROIpy/core/utils/utils.py", + "sha256": "b0896917e8fd20e8bf7fb3bf446bed6e66d451e60a09b69bc22b16e317188275", + "language": "Python", + "lines": 428, + "truncated": false, + "block": 1, + "row": 8864 + }, + { + "path": "src/ROIpy/plot/plot.py", + "sha256": "c42fec0b3847feb8cf4537e0cf2a7a058c290c33d453eb26ea85290deabc25a4", + "language": "Python", + "lines": 1599, + "truncated": false, + "block": 1, + "row": 9773 + } + ] +} \ No newline at end of file diff --git a/manifests/61/github.com__juliamolsim__molly.jl.json b/manifests/61/github.com__juliamolsim__molly.jl.json new file mode 100644 index 0000000000000000000000000000000000000000..d686389c7b6b6d131ec3008bbc125d53b46eafe1 --- /dev/null +++ b/manifests/61/github.com__juliamolsim__molly.jl.json @@ -0,0 +1,1065 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/juliamolsim/molly.jl", + "url": "https://github.com/JuliaMolSim/Molly.jl", + "host": "github.com", + "commit": "e35e3127f5648b56384019f2bd860b95dcf71b7d", + "license": "MIT", + "license_confirmed_by": "license file LICENSE.md", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.md", + "sha256": "409b338be9582f1a604ee22332c0b3cd12406cf76e776631626ca545702ec471", + "language": "License", + "lines": 23, + "truncated": false, + "block": 1, + "row": 2185 + }, + { + "path": "README.md", + "sha256": "8f20353d3200285e2cdb54475d4ab2875432cb82f3b9def6351c0e769452d2c4", + "language": "Text", + "lines": 157, + "truncated": false, + "block": 1, + "row": 11958 + }, + { + "path": "benchmark/benchmark_gpu_tiles.jl", + "sha256": "513af1f49e5a3ecb4022d175d308d57d6dda6547ff4892f6093862fb1e273df9", + "language": "Julia", + "lines": 165, + "truncated": false, + "block": 1, + "row": 1611 + }, + { + "path": "benchmark/benchmarks.jl", + "sha256": "18c9621d6a3cedfde610a85d22a845f67509c4621fecce4a4f81b304b17baccd", + "language": "Julia", + "lines": 158, + "truncated": false, + "block": 1, + "row": 1614 + }, + { + "path": "benchmark/gpu_profile_utils.jl", + "sha256": "c3004a704da17ced74efc643f88927f40accac12ead07935da3cf969bd37648b", + "language": "Julia", + "lines": 415, + "truncated": false, + "block": 1, + "row": 1631 + }, + { + "path": "benchmark/protein.jl", + "sha256": "0f8c8e4f8fced47a84be98be1c6ad6f5e935f99d05f26fd191d2002a4c9ba23f", + "language": "Julia", + "lines": 62, + "truncated": false, + "block": 1, + "row": 1587 + }, + { + "path": "docs/make.jl", + "sha256": "b63b99b1fc4adf3a55dc1715006980afd4797db65d0e9345a3741817632209b9", + "language": "Julia", + "lines": 28, + "truncated": false, + "block": 1, + "row": 1569 + }, + { + "path": "exercises/molly_exercise.ipynb", + "sha256": "c23be1a40afd821984f7e2bc79218a16e29552c46ae1a0521db82e9fdd8358ab", + "language": "Jupyter", + "lines": 475, + "truncated": false, + "block": 1, + "row": 1974 + }, + { + "path": "exercises/molly_exercise_answers.ipynb", + "sha256": "122e38a28b0396fb4c1180b33272eef691ea0b5af71f646eb3b290f84cc584e7", + "language": "Jupyter", + "lines": 614, + "truncated": false, + "block": 1, + "row": 2005 + }, + { + "path": "ext/MollyCUDAExt.jl", + "sha256": "bc1d2ef1dab99a94b7564f741eab95b26e8dff128178bf6ac579c75f0a536cc8", + "language": "Julia", + "lines": 2839, + "truncated": false, + "block": 1, + "row": 1680 + }, + { + "path": "ext/MollyEnzymeExt.jl", + "sha256": "3c30832fde703c186a03294a613316cf92d345574d7b0e7b2272a3fce648a815", + "language": "Julia", + "lines": 1339, + "truncated": false, + "block": 1, + "row": 1671 + }, + { + "path": "ext/MollyGLMakieExt.jl", + "sha256": "eed238603c3402fb54c9d2d1a785dad083d8596ce4f74e9a9085b7a1f405d7fd", + "language": "Julia", + "lines": 140, + "truncated": false, + "block": 1, + "row": 1612 + }, + { + "path": "ext/MollyKernelDensityExt.jl", + "sha256": "3a8744f2eebe5170b1e507a6ab6f6714df3f1be493118377d822ff05008f21e7", + "language": "Julia", + "lines": 30, + "truncated": false, + "block": 1, + "row": 1573 + }, + { + "path": "ext/MollyLuxExt.jl", + "sha256": "d0d19abc8313158804875318fbb038bce0bf704421b2e1261ee711a20e68e0ce", + "language": "Julia", + "lines": 1817, + "truncated": false, + "block": 1, + "row": 1676 + }, + { + "path": "ext/MollyPythonCallExt.jl", + "sha256": "4c29284494bd68e331a069ead88a8db76fcba3730147b5361598fb6a12b861b7", + "language": "Julia", + "lines": 140, + "truncated": false, + "block": 1, + "row": 1608 + }, + { + "path": "scripts/awh_dipeptide.jl", + "sha256": "345d9c388272260fe2e66ec7f9a38b04ec93a7175abf8959a2b8585868fade6a", + "language": "Julia", + "lines": 262, + "truncated": false, + "block": 1, + "row": 1609 + }, + { + "path": "scripts/awh_solvation.jl", + "sha256": "747118452ff5d851a47254f71f0aa6659811b29c48d36a483e109c6ae6ce281d", + "language": "Julia", + "lines": 482, + "truncated": false, + "block": 1, + "row": 1629 + }, + { + "path": "scripts/tss_dipeptide.jl", + "sha256": "6b761114a372c0dbb726b5a0458b01899da8e20cf00302744ac4fd6d5ad864df", + "language": "Julia", + "lines": 322, + "truncated": false, + "block": 1, + "row": 1615 + }, + { + "path": "scripts/tss_solvation.jl", + "sha256": "8d045129ecad2db92c43937897c3727a51d3e6c9df5d870973664b37421f89eb", + "language": "Julia", + "lines": 557, + "truncated": false, + "block": 1, + "row": 1635 + }, + { + "path": "src/Molly.jl", + "sha256": "1458cf41fcde3dfb66eb20c02b35de3b8ef853017db0c3bf8770f72972489e4f", + "language": "Julia", + "lines": 98, + "truncated": false, + "block": 1, + "row": 1593 + }, + { + "path": "src/analysis.jl", + "sha256": "828a41eb4703da4bd4de3a80ef942e4e852d40426971a98968601a469bfc2443", + "language": "Julia", + "lines": 175, + "truncated": false, + "block": 1, + "row": 1613 + }, + { + "path": "src/bias/bias.jl", + "sha256": "e9d17b7c27c13f2a25cee1bae87ca46939063b861bc6c51f5013b23e37909f5b", + "language": "Julia", + "lines": 329, + "truncated": false, + "block": 1, + "row": 1619 + }, + { + "path": "src/bias/cv.jl", + "sha256": "ef30161e8d9afb23623c07e2984b26e214ff13101b88bbafed52658fa3a3cde3", + "language": "Julia", + "lines": 861, + "truncated": false, + "block": 1, + "row": 1649 + }, + { + "path": "src/constraints/constraints.jl", + "sha256": "dbd6d43d48028c48fa167ab20f048e29a94e6a9b2aeaceca87a523efd42f8457", + "language": "Julia", + "lines": 660, + "truncated": false, + "block": 1, + "row": 1643 + }, + { + "path": "src/constraints/lincs.jl", + "sha256": "75ecb040963801722acdd6a25e0200708d510267c3f8d20aea1faf586f5ede91", + "language": "Julia", + "lines": 1420, + "truncated": false, + "block": 1, + "row": 1665 + }, + { + "path": "src/constraints/shake.jl", + "sha256": "b543133282d22538db0f4cfae2b4ee4b79e1acca0ffc5928e448797e5f56cda1", + "language": "Julia", + "lines": 1401, + "truncated": false, + "block": 1, + "row": 1666 + }, + { + "path": "src/coupling.jl", + "sha256": "1b00b241202c45f83adce3eb5e0596226ce90f5f00c4aa9cbbb7d8747844c570", + "language": "Julia", + "lines": 1094, + "truncated": false, + "block": 1, + "row": 1660 + }, + { + "path": "src/cuda_config.jl", + "sha256": "0d40fd1c7562c6c40672dcf661f10212ad46721a5d7802193dc7bab02d301709", + "language": "Julia", + "lines": 75, + "truncated": false, + "block": 1, + "row": 1589 + }, + { + "path": "src/cutoffs.jl", + "sha256": "f96dc6282c61710bc9b713ea07e3ec9ac5421cb914c9acd0d7169e4ecac44b66", + "language": "Julia", + "lines": 280, + "truncated": false, + "block": 1, + "row": 1616 + }, + { + "path": "src/energy.jl", + "sha256": "2a4e8a4769522d8aa9af5664e7c9347ee3b1163eba01c8c4d4ba983eaac17ef6", + "language": "Julia", + "lines": 578, + "truncated": false, + "block": 1, + "row": 1644 + }, + { + "path": "src/force.jl", + "sha256": "15598e0c4139ff08511d4b446de0cc8f47535dfc161087c6be13648b455c974e", + "language": "Julia", + "lines": 1331, + "truncated": false, + "block": 1, + "row": 1667 + }, + { + "path": "src/force_field.jl", + "sha256": "493146a37b36d65e515115def3b05745b2517883d33ec43ac743a5e0a9248ca9", + "language": "Julia", + "lines": 1324, + "truncated": false, + "block": 1, + "row": 1669 + }, + { + "path": "src/free_energy/AWH.jl", + "sha256": "5aa4002046c9f807da491727aa3fc1561b1aa953afd70d05cbc85c042e1f9223", + "language": "Julia", + "lines": 617, + "truncated": false, + "block": 1, + "row": 1641 + }, + { + "path": "src/free_energy/TSS.jl", + "sha256": "0a9a2a40a6eee583cf11e829cbc4a3ceec64c30c44f2507e684614c8f522123a", + "language": "Julia", + "lines": 16, + "truncated": false, + "block": 1, + "row": 1568 + }, + { + "path": "src/free_energy/TSS/common.jl", + "sha256": "1d92fd40b5b277658ecf97f41c3c7ab3e57dd01d5c9cd411b834d96ef972bcd9", + "language": "Julia", + "lines": 105, + "truncated": false, + "block": 1, + "row": 1596 + }, + { + "path": "src/free_energy/TSS/deconvolution.jl", + "sha256": "939ef8397782fd845838a414dd0ebb05ee72ecdb4b580cc05bd213eb4df84d09", + "language": "Julia", + "lines": 257, + "truncated": false, + "block": 1, + "row": 1617 + }, + { + "path": "src/free_energy/TSS/global_estimators.jl", + "sha256": "222320d2fb02ec4ccd2b842f1097dd41184f8a9e043faa21d7ec601f5fa5acee", + "language": "Julia", + "lines": 964, + "truncated": false, + "block": 1, + "row": 1655 + }, + { + "path": "src/free_energy/TSS/history.jl", + "sha256": "2fe491fc6115cc52f62338e29d1a4bdae1c4aa34151c604a9b1aa759555698d9", + "language": "Julia", + "lines": 319, + "truncated": false, + "block": 1, + "row": 1624 + }, + { + "path": "src/free_energy/TSS/observables.jl", + "sha256": "2549c292fefc9fbb0169839262a0bd5f842a57565f8600d0a1249e7e38ff22c1", + "language": "Julia", + "lines": 287, + "truncated": false, + "block": 1, + "row": 1625 + }, + { + "path": "src/free_energy/TSS/single_window.jl", + "sha256": "6e0fead50181432a46a82488657c3ff88586cd23388cedbac5c03507eba4759a", + "language": "Julia", + "lines": 444, + "truncated": false, + "block": 1, + "row": 1634 + }, + { + "path": "src/free_energy/TSS/windowed_simulation.jl", + "sha256": "8fd3e849cda75fd484128e1551af8545ebe37bb335c928cb0ce958e19798f15e", + "language": "Julia", + "lines": 1065, + "truncated": false, + "block": 1, + "row": 1658 + }, + { + "path": "src/free_energy/TSS/windows.jl", + "sha256": "87a0a19178f59037eae19749b4c465e8c20ebda7e3e10d67cab0454196281007", + "language": "Julia", + "lines": 966, + "truncated": false, + "block": 1, + "row": 1651 + }, + { + "path": "src/free_energy/alchemy.jl", + "sha256": "5973fdd8ab52094b187c87458895938fb7ad27ab35b59d13fc5effb95ca9fd64", + "language": "Julia", + "lines": 122, + "truncated": false, + "block": 1, + "row": 1599 + }, + { + "path": "src/free_energy/extended_ensemble.jl", + "sha256": "43242030a97b8352be7420d2076ab7c6e410594e052e45491906b4abf3a71633", + "language": "Julia", + "lines": 363, + "truncated": false, + "block": 1, + "row": 1633 + }, + { + "path": "src/free_energy/mbar.jl", + "sha256": "7725b3116439f8e8e50a61d3087d88c2714ba2182309b935c81110700ee91572", + "language": "Julia", + "lines": 1022, + "truncated": false, + "block": 1, + "row": 1654 + }, + { + "path": "src/free_energy/pmf_deconvolution.jl", + "sha256": "d4e7c5e31d383ba9422f91ab537a748f1a824ebe4f9567b4149defafa8b8dfd7", + "language": "Julia", + "lines": 506, + "truncated": false, + "block": 1, + "row": 1637 + }, + { + "path": "src/free_energy/reweighting.jl", + "sha256": "76e285a767659dd8f7c4c76d0923253845e9c9b791a70d509b8cc227d5594c10", + "language": "Julia", + "lines": 303, + "truncated": false, + "block": 1, + "row": 1623 + }, + { + "path": "src/free_energy/stats.jl", + "sha256": "48c312fb43905df81a737fb703e68f40d38838fc8b2eee8958fb71ffe7aef68e", + "language": "Julia", + "lines": 103, + "truncated": false, + "block": 1, + "row": 1594 + }, + { + "path": "src/free_energy/thermo.jl", + "sha256": "9883682121e3bc2ed91a3009470342936891a7280f779a2a8e87f166f7ac96f1", + "language": "Julia", + "lines": 345, + "truncated": false, + "block": 1, + "row": 1628 + }, + { + "path": "src/interactions/buckingham.jl", + "sha256": "cb896c3273c7561d00395d6c5a31dfc79fa6f699da07ae0826ff1114c22b71c2", + "language": "Julia", + "lines": 116, + "truncated": false, + "block": 1, + "row": 1598 + }, + { + "path": "src/interactions/cmap_torsion.jl", + "sha256": "da77a69c38152c5097a2b329fca5076c9d504b29f760fb3e6e6fead53d9f8bfa", + "language": "Julia", + "lines": 346, + "truncated": false, + "block": 1, + "row": 1626 + }, + { + "path": "src/interactions/cosine_angle.jl", + "sha256": "5246b33d57f37c58fbde5f0cfb274b242e1851d2e075d1a95073a59f7a8283d6", + "language": "Julia", + "lines": 51, + "truncated": false, + "block": 1, + "row": 1579 + }, + { + "path": "src/interactions/coulomb.jl", + "sha256": "eb43097f7e948404d465fb5f7eb5d2afec2859534e21a93a9873497be3cba2b7", + "language": "Julia", + "lines": 2105, + "truncated": false, + "block": 1, + "row": 1672 + }, + { + "path": "src/interactions/double_exponential.jl", + "sha256": "178782df7632b5d79d821c052008f21b292f004ae940081fcefe402ef198aa79", + "language": "Julia", + "lines": 334, + "truncated": false, + "block": 1, + "row": 1621 + }, + { + "path": "src/interactions/dpd.jl", + "sha256": "cf240601195cdce0b8306836c22bb0c3342eefc36df4377034eabb12cff83e24", + "language": "Julia", + "lines": 149, + "truncated": false, + "block": 1, + "row": 1607 + }, + { + "path": "src/interactions/ewald.jl", + "sha256": "4cba9a45fa366d912a8249c1e0cee85aeecbc87c52f306e166972985d3a18ff6", + "language": "Julia", + "lines": 1410, + "truncated": false, + "block": 1, + "row": 1668 + }, + { + "path": "src/interactions/fene_bond.jl", + "sha256": "13583202f02f7ba04f8c90de46aee5ac2b223f2179385464c6903bd0598cbb3b", + "language": "Julia", + "lines": 78, + "truncated": false, + "block": 1, + "row": 1586 + }, + { + "path": "src/interactions/gravity.jl", + "sha256": "02f031adfc5dc25fcafdcf7b244ba0b13be460339bc699707239b97faa6c4ebf", + "language": "Julia", + "lines": 62, + "truncated": false, + "block": 1, + "row": 1582 + }, + { + "path": "src/interactions/harmonic_angle.jl", + "sha256": "ca122d551842867048f37780dce546f76c4f1032a2766bc44fbe025977828c69", + "language": "Julia", + "lines": 51, + "truncated": false, + "block": 1, + "row": 1581 + }, + { + "path": "src/interactions/harmonic_bond.jl", + "sha256": "17a53fd7ccbb8128d2ed070361dccb24465cef70c7d69a8fdaf81e774784fcdc", + "language": "Julia", + "lines": 38, + "truncated": false, + "block": 1, + "row": 1571 + }, + { + "path": "src/interactions/harmonic_position_restraint.jl", + "sha256": "15738f435cf6c22060447612b44d15472d72e40910f2ed8d61b3473b166202d3", + "language": "Julia", + "lines": 48, + "truncated": false, + "block": 1, + "row": 1576 + }, + { + "path": "src/interactions/harmonic_torsion.jl", + "sha256": "25e129b5d3ad56d1d76ed3023475491a3982418ca5f140023b9c0df27b684bba", + "language": "Julia", + "lines": 49, + "truncated": false, + "block": 1, + "row": 1583 + }, + { + "path": "src/interactions/implicit_solvent.jl", + "sha256": "53ab8905840b87f52af05a370190afe633c92d2e84d1dc32c37f5f6f949aac80", + "language": "Julia", + "lines": 1835, + "truncated": false, + "block": 1, + "row": 1675 + }, + { + "path": "src/interactions/lennard_jones.jl", + "sha256": "548e4fd7f94d591018dc4999a9d8fbb6bcfefb0fe15d8c667d58f080b4eaa30b", + "language": "Julia", + "lines": 957, + "truncated": false, + "block": 1, + "row": 1650 + }, + { + "path": "src/interactions/mie.jl", + "sha256": "633b52a05e9302ed0f86d809f6850fea9d21b2ebb3b8413b03f60cc76272343a", + "language": "Julia", + "lines": 137, + "truncated": false, + "block": 1, + "row": 1601 + }, + { + "path": "src/interactions/ml_potentials.jl", + "sha256": "4f9c760d1aadb720c3c25b8f75f0a59639e1f4ab197e44798f47d83a6e3d07d2", + "language": "Julia", + "lines": 97, + "truncated": false, + "block": 1, + "row": 1604 + }, + { + "path": "src/interactions/morse_bond.jl", + "sha256": "bfa024dfb68b0fc49b810d22c44c3253d13cd6fd47a9d6f646a0529e16d51e00", + "language": "Julia", + "lines": 43, + "truncated": false, + "block": 1, + "row": 1574 + }, + { + "path": "src/interactions/muller_brown.jl", + "sha256": "e94bcf07c35a0f03d6eb8ab18f7a31d0ea255398513417fefea199dd8db6871a", + "language": "Julia", + "lines": 93, + "truncated": false, + "block": 1, + "row": 1595 + }, + { + "path": "src/interactions/periodic_torsion.jl", + "sha256": "84f18813f7bab32dd606c80fcd99ba0f072346a38cb8f3b9d7cb967141877b5b", + "language": "Julia", + "lines": 127, + "truncated": false, + "block": 1, + "row": 1606 + }, + { + "path": "src/interactions/rb_torsion.jl", + "sha256": "16bdc85282904c80dda9a9b79c9cbbcde0c67e251f56b2ae0f60b5c2221b2798", + "language": "Julia", + "lines": 69, + "truncated": false, + "block": 1, + "row": 1590 + }, + { + "path": "src/interactions/soft_sphere.jl", + "sha256": "0859a1e4caa95515c01eeb573003115afa244706f8a8940c9ef6d557a2a86ed0", + "language": "Julia", + "lines": 83, + "truncated": false, + "block": 1, + "row": 1592 + }, + { + "path": "src/interactions/urey_bradley.jl", + "sha256": "5a8ce73f41e9da4d7c68a2a50f66611f76bdf20d2896fbaee9da0858cd06e027", + "language": "Julia", + "lines": 68, + "truncated": false, + "block": 1, + "row": 1588 + }, + { + "path": "src/kernels.jl", + "sha256": "2bf7802a2eabe6f17978c4a6283f42f3adeaf5358d4c446569ced97eee7ef666", + "language": "Julia", + "lines": 826, + "truncated": false, + "block": 1, + "row": 1657 + }, + { + "path": "src/loggers.jl", + "sha256": "7c118d3b2f5f8349132200c00695cba885a2cd52441189ca20b8e6bb8193c6bc", + "language": "Julia", + "lines": 1274, + "truncated": false, + "block": 1, + "row": 1664 + }, + { + "path": "src/mixing.jl", + "sha256": "8f62741a464fc7c6b5be811dd4e7181af76ab927e34f3e173834fadd56b36d3c", + "language": "Julia", + "lines": 131, + "truncated": false, + "block": 1, + "row": 1602 + }, + { + "path": "src/neighbors.jl", + "sha256": "4845a498f6fb4262d3c1cac83a3a05e8d5a96d2b2b922d1db8cc4003abb762be", + "language": "Julia", + "lines": 958, + "truncated": false, + "block": 1, + "row": 1656 + }, + { + "path": "src/parameters.jl", + "sha256": "59fad8999972528108e691e2c60b9e1db83eb5d0379e9d716f7b4d6c17bd8693", + "language": "Julia", + "lines": 422, + "truncated": false, + "block": 1, + "row": 1636 + }, + { + "path": "src/residues.jl", + "sha256": "513541fc30b26f40bdf22ee7ebf863c34ecb60ef59c5c9b713131d03e8ddf5a2", + "language": "Julia", + "lines": 1159, + "truncated": false, + "block": 1, + "row": 1661 + }, + { + "path": "src/setup.jl", + "sha256": "ed9f571b1735cc553a95a509ae864f6694df64c59b5312f4971edefe1caef331", + "language": "Julia", + "lines": 1800, + "truncated": false, + "block": 1, + "row": 1674 + }, + { + "path": "src/simulators.jl", + "sha256": "387c716fda3f111367db0f973cead45d1ca640491d2a245cca667a37981fe9be", + "language": "Julia", + "lines": 2429, + "truncated": false, + "block": 1, + "row": 1679 + }, + { + "path": "src/spatial.jl", + "sha256": "e2dea87e23165622a8b1a1426bb6a7f85a6278af01409fda78424a263cc8863e", + "language": "Julia", + "lines": 1355, + "truncated": false, + "block": 1, + "row": 1663 + }, + { + "path": "src/trajectory.jl", + "sha256": "3c41f8c1e64fea5daabe7159b111c3b0da1a55cc3862e74f46f572803d6dafc0", + "language": "Julia", + "lines": 57, + "truncated": false, + "block": 1, + "row": 1584 + }, + { + "path": "src/types.jl", + "sha256": "b6c9468fc4ccd17225e5fc803b60c8970ba44caf30d48034d1f0b6b188339f99", + "language": "Julia", + "lines": 2212, + "truncated": false, + "block": 1, + "row": 1677 + }, + { + "path": "src/units.jl", + "sha256": "8b30bada32e82928212bde66351bae357442c05868111079e91e5102a65a2521", + "language": "Julia", + "lines": 236, + "truncated": false, + "block": 1, + "row": 1618 + }, + { + "path": "src/virtual.jl", + "sha256": "b9333c665b5f25e6d6a165d3ebc573f4f6094b7f6c67dcf4e6638f656efa929d", + "language": "Julia", + "lines": 363, + "truncated": false, + "block": 1, + "row": 1630 + }, + { + "path": "test/analysis.jl", + "sha256": "d04a2f88858587241e9b13aca6817c9c97f9f9548899b237f37940a7687454ec", + "language": "Julia", + "lines": 116, + "truncated": false, + "block": 1, + "row": 1610 + }, + { + "path": "test/aqua.jl", + "sha256": "54aa2f7ea138eddfae2a5e187cd06ea1266ef8307fb305921ab30fa9539d4e44", + "language": "Julia", + "lines": 6, + "truncated": false, + "block": 1, + "row": 1567 + }, + { + "path": "test/basic.jl", + "sha256": "60d65a6befd7aab781a240e4c80735ab7d17ed428866c7bc54be917e0d0a3b0f", + "language": "Julia", + "lines": 1483, + "truncated": false, + "block": 1, + "row": 1670 + }, + { + "path": "test/bias.jl", + "sha256": "823ce03dd3dafdb2a791ee29194c9813e5b3873834319121e663c3bf377acf61", + "language": "Julia", + "lines": 664, + "truncated": false, + "block": 1, + "row": 1639 + }, + { + "path": "test/constraints.jl", + "sha256": "e10f3cb1ce509da356af4877f4b4579f99e2fba81712e70d740d8c4c55a688cf", + "language": "Julia", + "lines": 1891, + "truncated": false, + "block": 1, + "row": 1673 + }, + { + "path": "test/coupling.jl", + "sha256": "e5e99323e75f777d9a3bd4b7f81be107a2586528f3ddd12e05edb9ba7d6ce4af", + "language": "Julia", + "lines": 619, + "truncated": false, + "block": 1, + "row": 1642 + }, + { + "path": "test/extra/acemd.jl", + "sha256": "c39938e07fa881d38ba054810dd684db55c7acea5331bfd38cef4587150de2ac", + "language": "Julia", + "lines": 39, + "truncated": false, + "block": 1, + "row": 1570 + }, + { + "path": "test/extra/ase_calculator.jl", + "sha256": "b6cf4f5afe9a99906772c3851d194505dfedeb4ef5bd75550c352906c420fca3", + "language": "Julia", + "lines": 85, + "truncated": false, + "block": 1, + "row": 1585 + }, + { + "path": "test/extra/check_ff_xml.jl", + "sha256": "7d27650cd7211d076aa08725b045f62a7c1ca99f199b8637544c95e236474cb2", + "language": "Julia", + "lines": 44, + "truncated": false, + "block": 1, + "row": 1575 + }, + { + "path": "test/extra/energy_conservation.jl", + "sha256": "be89a79e863f0957f2c6ae65cd1339cead9b6eca8edfe2a4ce25670f261a6671", + "language": "Julia", + "lines": 94, + "truncated": false, + "block": 1, + "row": 1597 + }, + { + "path": "test/gpu_consistency.jl", + "sha256": "646237c2c950bf97ac8e0ac0c007c55a8b8634175dd8f7c62ba5f3d71f3ac7ca", + "language": "Julia", + "lines": 677, + "truncated": false, + "block": 1, + "row": 1646 + }, + { + "path": "test/gpu_optimizations.jl", + "sha256": "4c4ccb45464d5946a40b966beeba416a1502809af8da29283ea18b46c3123fe8", + "language": "Julia", + "lines": 252, + "truncated": false, + "block": 1, + "row": 1627 + }, + { + "path": "test/gradients_1.jl", + "sha256": "8868560c32c7c81c843faf559f2a8423540a12c8c09ec91228901148f4dff784", + "language": "Julia", + "lines": 470, + "truncated": false, + "block": 1, + "row": 1638 + }, + { + "path": "test/gradients_2.jl", + "sha256": "87e121041c223a26535a7db087da73bf605d638dc18aab2a867b2d452947c8ed", + "language": "Julia", + "lines": 1123, + "truncated": false, + "block": 1, + "row": 1662 + }, + { + "path": "test/gradients_3.jl", + "sha256": "15b2ee48b3226849a825e813729924327e02f861661e268a10b488cfd512a6d5", + "language": "Julia", + "lines": 225, + "truncated": false, + "block": 1, + "row": 1620 + }, + { + "path": "test/gradients_4.jl", + "sha256": "c6da9c0a584b25ee22bc3fe4561e896ed00c80e87276a4f1e070790ccbca5dd5", + "language": "Julia", + "lines": 112, + "truncated": false, + "block": 1, + "row": 1605 + }, + { + "path": "test/interactions.jl", + "sha256": "a4e964e71d448839ca658896eef2ae11529cc669ac2916c6e85aaa34c528e0c6", + "language": "Julia", + "lines": 2059, + "truncated": false, + "block": 1, + "row": 1678 + }, + { + "path": "test/jet.jl", + "sha256": "dbb5db460342b14b8a5227b1b9035e109ea8e7adedf71beaf7bec6a892e8d19d", + "language": "Julia", + "lines": 509, + "truncated": false, + "block": 1, + "row": 1648 + }, + { + "path": "test/minimization.jl", + "sha256": "961261d3a171914317cebc6af672a843284eee203ed10a3cabe1a61744c9ff04", + "language": "Julia", + "lines": 67, + "truncated": false, + "block": 1, + "row": 1591 + }, + { + "path": "test/ml_potentials.jl", + "sha256": "21b101f83aa09d7bfb44fb1cc3c4c894a6dc3c0bbbbdc5371a8dc14973be7bee", + "language": "Julia", + "lines": 740, + "truncated": false, + "block": 1, + "row": 1653 + }, + { + "path": "test/protein_1.jl", + "sha256": "61bdf63c9e0ee2b7585d56021fb0e1510f1f581cc1df3b4ed14a1e044f04a10e", + "language": "Julia", + "lines": 633, + "truncated": false, + "block": 1, + "row": 1647 + }, + { + "path": "test/protein_2.jl", + "sha256": "bbd19a17c950320512b8737af2959b1b7dd3c22974f85ea739a4be8029a5f817", + "language": "Julia", + "lines": 215, + "truncated": false, + "block": 1, + "row": 1622 + }, + { + "path": "test/reference/openmm_a99SB-disp.py", + "sha256": "d11c9f3eaa60d7dd6f7c4331a0f693df2bdfef4bdf396f162c1e6782bf4763d9", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 1, + "row": 6548 + }, + { + "path": "test/reference/openmm_comparison.py", + "sha256": "35959f859538bfb6c4e213fb00ae188d8725a106334b18bb30745bdd52b80a6c", + "language": "Python", + "lines": 155, + "truncated": false, + "block": 1, + "row": 7602 + }, + { + "path": "test/reference/openmm_ethanol_garnet.py", + "sha256": "9fd1b002df21269549d2a97f68041908e61f2215a1cbcdda7c4b75663553f514", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 1, + "row": 6244 + }, + { + "path": "test/reference/openmm_implicit_solvent.py", + "sha256": "3272f35554be1c46227dc028873aee18e226a61650ef4b2c20fa1754833af4b0", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 1, + "row": 6051 + }, + { + "path": "test/reference/openmm_mts.py", + "sha256": "ae9562fb5051c3ddb33903c1fb92b6f62af29c8e13b9a312a533f01784077904", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 1, + "row": 6501 + }, + { + "path": "test/reference/torchani_reference.py", + "sha256": "54de354a2492a61e7fd15cb6c8130bfc60198695fd12ca095d3110c419a580e6", + "language": "Python", + "lines": 429, + "truncated": false, + "block": 1, + "row": 9205 + }, + { + "path": "test/runtests.jl", + "sha256": "eb6d7a1e69e0c571d9b04250ee6fba15313219fcff5fedec632ee90b7135ecb0", + "language": "Julia", + "lines": 143, + "truncated": false, + "block": 1, + "row": 1600 + }, + { + "path": "test/simulation_1.jl", + "sha256": "86e0e3809bc5f3bdbaebe9de9da88d7487823c909acf86e0497db403170324a6", + "language": "Julia", + "lines": 1014, + "truncated": false, + "block": 1, + "row": 1659 + }, + { + "path": "test/simulation_2.jl", + "sha256": "ff24ec202f41b4c86b33031abbe85bdd48b27613eb72031f69ad1ec6a8249b8a", + "language": "Julia", + "lines": 923, + "truncated": false, + "block": 1, + "row": 1652 + }, + { + "path": "test/tss.jl", + "sha256": "9aacc3f8538871ee2cbe43cd57bd56966f5da5f92e415224b837b5f91b8b8cf9", + "language": "Julia", + "lines": 655, + "truncated": false, + "block": 1, + "row": 1645 + } + ] +} \ No newline at end of file diff --git a/manifests/61/github.com__mdbudde__mcw_preclinical_mrisequences.json b/manifests/61/github.com__mdbudde__mcw_preclinical_mrisequences.json new file mode 100644 index 0000000000000000000000000000000000000000..eea6298f967f8d8dc5a33f9f9fab4eaaf799446f --- /dev/null +++ b/manifests/61/github.com__mdbudde__mcw_preclinical_mrisequences.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/mdbudde/mcw_preclinical_mrisequences", + "url": "http://github.com/mdbudde/mcw_Preclinical_MRIsequences", + "host": "github.com", + "commit": "ac17b7b3437458468c92c9e08091a72778f98c83", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "cbf52bcbdc46527cfc2b39cb9d1e6f53f2a69075eef2adc039333b71e165e835", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2128 + }, + { + "path": "README.md", + "sha256": "df7326673650d6f3c502311634de6ab20b94867b8941698d54c22151f7784917", + "language": "Text", + "lines": 110, + "truncated": false, + "block": 1, + "row": 11924 + } + ] +} \ No newline at end of file diff --git a/manifests/62/github.com__hbyrne07__brainage-in-adolescent-alcohol-initiation.json b/manifests/62/github.com__hbyrne07__brainage-in-adolescent-alcohol-initiation.json new file mode 100644 index 0000000000000000000000000000000000000000..cb81e94c9fcc4fbbb8570ab512b088cce1bd103e --- /dev/null +++ b/manifests/62/github.com__hbyrne07__brainage-in-adolescent-alcohol-initiation.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/hbyrne07/brainage-in-adolescent-alcohol-initiation", + "url": "https://github.com/hbyrne07/brainage-in-adolescent-alcohol-initiation", + "host": "github.com", + "commit": "96ec5309c48f74b92a0cb24118f4162d62ea7874", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "d16ba326a1bd87609d337efad99983153653567f6267316de9c0ca076beab835", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2092 + }, + { + "path": "README.md", + "sha256": "5eef20ddfb7cb2dec4ac07ef1998249eb0270e2b16a3c8eac152ff45c2828b1a", + "language": "Text", + "lines": 2, + "truncated": false, + "block": 1, + "row": 11765 + } + ] +} \ No newline at end of file diff --git a/manifests/62/zenodo__22827658.json b/manifests/62/zenodo__22827658.json new file mode 100644 index 0000000000000000000000000000000000000000..6c8ec9175aa2d7008cdb9d3b6092369ef325ac60 --- /dev/null +++ b/manifests/62/zenodo__22827658.json @@ -0,0 +1,120 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:22827658", + "url": "https://doi.org/10.5281/zenodo.22827658", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENCE.md", + "sha256": "6f96ec397259fa573199234a7bfac8eb732a3aaf253a0c7a7cae6e3b0153c6b6", + "language": "License", + "lines": 31, + "truncated": false, + "block": 1, + "row": 2190 + }, + { + "path": "LICENSE", + "sha256": "0ebcc61366aff03c717f7054ef7029cd1d79d92058f62f2497f11bae0a58df20", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2146 + }, + { + "path": "README.md", + "sha256": "031296e93232547400ca7379d1226a9940bad957deba743b43e91f01a41ea4eb", + "language": "Text", + "lines": 88, + "truncated": false, + "block": 1, + "row": 11886 + }, + { + "path": "mcp/psyp70385-mcp/server.py", + "sha256": "35c400af2523d478f1f2487e713a765f103dd54e86af13d3f805c8319ddc53dc", + "language": "Python", + "lines": 348, + "truncated": false, + "block": 1, + "row": 8959 + }, + { + "path": "mcp/psyp70385-mcp/tests/test_tools.py", + "sha256": "df928517b28d61a0b3f5d1366f2fa36499c1cf750408af1dec280403142dd4c0", + "language": "Python", + "lines": 314, + "truncated": false, + "block": 1, + "row": 8623 + }, + { + "path": "tooling/adjudicate.py", + "sha256": "ee83673d21fb435c9be388d2534e7e5e73fdf504390c5d656d550202fed63730", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 1, + "row": 7206 + }, + { + "path": "tooling/apply_review.py", + "sha256": "f2b9cc9851c870f9dc7b54ae1bf78ee708cf6405135d93133ccaf2ad86c468e4", + "language": "Python", + "lines": 347, + "truncated": false, + "block": 1, + "row": 9168 + }, + { + "path": "tooling/build_metadata.py", + "sha256": "dfce2e302c4b7f3c9d091afd49484a77ab8ee3f7e9e1d6f05de3d3f70f881464", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 1, + "row": 8043 + }, + { + "path": "tooling/build_studies.py", + "sha256": "70318088f4a5a867b5a8bd7fedc310e9b83b2650e3f25a4035df268b32ed4df8", + "language": "Python", + "lines": 144, + "truncated": false, + "block": 1, + "row": 7802 + }, + { + "path": "tooling/bundle_setup.py", + "sha256": "15e66c899b6e3c49be0334a70c0275b09e94c6b2752537eee75be64408b96746", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 1, + "row": 7319 + }, + { + "path": "tooling/pmc_tables.py", + "sha256": "52b322b9281fc94b73258e5ebb611e2f74636aa726d59f27b5ca0e628fec7a3b", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 1, + "row": 6587 + }, + { + "path": "tooling/sync_mcp_data.py", + "sha256": "b8d5906156124154e7c8f30b07f5097f073b34d012ec43199b776927d8a6f169", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 1, + "row": 5526 + } + ] +} \ No newline at end of file diff --git a/manifests/62/zenodo__22827659.json b/manifests/62/zenodo__22827659.json new file mode 100644 index 0000000000000000000000000000000000000000..afb7dde080152030c29623e7493c86c8901b32f9 --- /dev/null +++ b/manifests/62/zenodo__22827659.json @@ -0,0 +1,120 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:22827659", + "url": "https://doi.org/10.5281/zenodo.22827659", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENCE.md", + "sha256": "6f96ec397259fa573199234a7bfac8eb732a3aaf253a0c7a7cae6e3b0153c6b6", + "language": "License", + "lines": 31, + "truncated": false, + "block": 1, + "row": 2190 + }, + { + "path": "LICENSE", + "sha256": "0ebcc61366aff03c717f7054ef7029cd1d79d92058f62f2497f11bae0a58df20", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2146 + }, + { + "path": "README.md", + "sha256": "031296e93232547400ca7379d1226a9940bad957deba743b43e91f01a41ea4eb", + "language": "Text", + "lines": 88, + "truncated": false, + "block": 1, + "row": 11886 + }, + { + "path": "mcp/psyp70385-mcp/server.py", + "sha256": "35c400af2523d478f1f2487e713a765f103dd54e86af13d3f805c8319ddc53dc", + "language": "Python", + "lines": 348, + "truncated": false, + "block": 1, + "row": 8959 + }, + { + "path": "mcp/psyp70385-mcp/tests/test_tools.py", + "sha256": "df928517b28d61a0b3f5d1366f2fa36499c1cf750408af1dec280403142dd4c0", + "language": "Python", + "lines": 314, + "truncated": false, + "block": 1, + "row": 8623 + }, + { + "path": "tooling/adjudicate.py", + "sha256": "ee83673d21fb435c9be388d2534e7e5e73fdf504390c5d656d550202fed63730", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 1, + "row": 7206 + }, + { + "path": "tooling/apply_review.py", + "sha256": "f2b9cc9851c870f9dc7b54ae1bf78ee708cf6405135d93133ccaf2ad86c468e4", + "language": "Python", + "lines": 347, + "truncated": false, + "block": 1, + "row": 9168 + }, + { + "path": "tooling/build_metadata.py", + "sha256": "dfce2e302c4b7f3c9d091afd49484a77ab8ee3f7e9e1d6f05de3d3f70f881464", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 1, + "row": 8043 + }, + { + "path": "tooling/build_studies.py", + "sha256": "70318088f4a5a867b5a8bd7fedc310e9b83b2650e3f25a4035df268b32ed4df8", + "language": "Python", + "lines": 144, + "truncated": false, + "block": 1, + "row": 7802 + }, + { + "path": "tooling/bundle_setup.py", + "sha256": "15e66c899b6e3c49be0334a70c0275b09e94c6b2752537eee75be64408b96746", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 1, + "row": 7319 + }, + { + "path": "tooling/pmc_tables.py", + "sha256": "52b322b9281fc94b73258e5ebb611e2f74636aa726d59f27b5ca0e628fec7a3b", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 1, + "row": 6587 + }, + { + "path": "tooling/sync_mcp_data.py", + "sha256": "b8d5906156124154e7c8f30b07f5097f073b34d012ec43199b776927d8a6f169", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 1, + "row": 5526 + } + ] +} \ No newline at end of file diff --git a/manifests/63/github.com__liaoherui__accusnv.json b/manifests/63/github.com__liaoherui__accusnv.json new file mode 100644 index 0000000000000000000000000000000000000000..4e1e51cf2ff9ffcf6ae91e1a95c3c55c28fea282 --- /dev/null +++ b/manifests/63/github.com__liaoherui__accusnv.json @@ -0,0 +1,264 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/liaoherui/accusnv", + "url": "https://github.com/liaoherui/AccuSNV", + "host": "github.com", + "commit": "562d1a5c4e528e7311259559fa93132bdfc23c46", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "61e2ad90a3b30a5d48d12438c79a2a1d585a4ef60f5317cdb6470d10b59405dd", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2076 + }, + { + "path": "README.md", + "sha256": "51ece04bd199211fec441a33e39ceabc5e68f63d7d50aed82fb66490a55d8531", + "language": "Text", + "lines": 320, + "truncated": false, + "block": 1, + "row": 11990 + }, + { + "path": "src/accusnv/__init__.py", + "sha256": "c876ec4636df5cf15537cc7685c767ac2e643256af7ddfed7b0e5cee5a3c5065", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 1, + "row": 5112 + }, + { + "path": "src/accusnv/accusnv/accusnv.py", + "sha256": "9fbe5b5f593938053d8834a40501b28e38182eba92679081156d11a40b1f516a", + "language": "Python", + "lines": 502, + "truncated": false, + "block": 1, + "row": 9621 + }, + { + "path": "src/accusnv/accusnv/cnn_pred.py", + "sha256": "5fb573adf4a93a7aa3b4278581e5404e5357de4b7a7e0b0a320ee8867b13a048", + "language": "Python", + "lines": 620, + "truncated": false, + "block": 1, + "row": 9432 + }, + { + "path": "src/accusnv/cli.py", + "sha256": "2cd12a96139ac016e719e1585f49494465124721caecea8e6709cc01b71345f4", + "language": "Python", + "lines": 611, + "truncated": false, + "block": 1, + "row": 9597 + }, + { + "path": "src/accusnv/downstream/__init__.py", + "sha256": "f8fd5c070524d515cc09c90928a8a800e5662e5a19f9917ac6d6767f225c03e1", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 1, + "row": 5298 + }, + { + "path": "src/accusnv/downstream/annotate.py", + "sha256": "53296490641266ff41d272c38c574d4f63e10fd3204c1115a5a78e0a935b1b4f", + "language": "Python", + "lines": 522, + "truncated": false, + "block": 1, + "row": 9598 + }, + { + "path": "src/accusnv/downstream/dnds.py", + "sha256": "8520fd77e5d2c1f69985e3f02483f131dc225e1d4c1d43317ccb45006a7dfcec", + "language": "Python", + "lines": 482, + "truncated": false, + "block": 1, + "row": 9418 + }, + { + "path": "src/accusnv/downstream/generate_dashboard.py", + "sha256": "bd091f150296d59be5fd7e4b2530476357d070d9cc4bac1ca9ad2a0f5f43e53b", + "language": "Python", + "lines": 412, + "truncated": false, + "block": 1, + "row": 9357 + }, + { + "path": "src/accusnv/downstream/snv.py", + "sha256": "e25b5e61f497d8ed06981644d0c7ec55b427a33e56e7fd9e0e97b15d2ce3fa16", + "language": "Python", + "lines": 2008, + "truncated": false, + "block": 1, + "row": 9854 + }, + { + "path": "src/accusnv/downstream/tree_building.py", + "sha256": "8d5c7e7dd7ab2ab537c8ae28dfd8fe564222224c3090afc764c26678c20e8a3f", + "language": "Python", + "lines": 432, + "truncated": false, + "block": 1, + "row": 9248 + }, + { + "path": "src/accusnv/log.py", + "sha256": "65a0171e1a06cbb578adeff70c113fa876061d1b3503b08ee270be35b330437f", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 1, + "row": 7523 + }, + { + "path": "src/accusnv/models/train.py", + "sha256": "9bcb853e182774dd6dfac1bb73cb46aeabd7814e46b54ade2caadd7f1f4eba12", + "language": "Python", + "lines": 837, + "truncated": false, + "block": 1, + "row": 9612 + }, + { + "path": "src/accusnv/preprocessing/build_candidate_mutation_table.py", + "sha256": "829af9dc9099e8731ba1758347c1ca5da06602804a707133058e07ee61736806", + "language": "Python", + "lines": 166, + "truncated": false, + "block": 1, + "row": 8247 + }, + { + "path": "src/accusnv/preprocessing/pileup2diversity.py", + "sha256": "f558a48821fc1920ab140ab18c922f865c23370df72f878c711f1be37bfa4f16", + "language": "Python", + "lines": 262, + "truncated": false, + "block": 1, + "row": 8860 + }, + { + "path": "src/accusnv/preprocessing/upstream_rejects.py", + "sha256": "e5f37e0b219effdb7581456df1d10de90111071986018568d5b546e7fc125a54", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 1, + "row": 7407 + }, + { + "path": "src/accusnv/preprocessing/utils.py", + "sha256": "d14620a956d3e741fa094262fae5961d9993afd6454e6a4db3a0c8cbfba1d35f", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 1, + "row": 7095 + }, + { + "path": "src/accusnv/preprocessing/variants2positions.py", + "sha256": "5ab334e5aaf4589a43ca8e25caf51f51ffc560bc84c1a4b99c7ef3a11e32c8dd", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 1, + "row": 7209 + }, + { + "path": "src/accusnv/preprocessing/vcf2quals_snakemake.py", + "sha256": "fadc2f8faf44aef926d64941b9ba020cf748503ca4b600dc86c17e8a4ab0ac78", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 1, + "row": 7085 + }, + { + "path": "src/accusnv/templates/peartree.bundle.min.js", + "sha256": "b6b5fa5b4562e0613b92a3ba7e2b201953f18cdbc6c4a18ba88a648fe5208365", + "language": "JavaScript", + "lines": 2, + "truncated": true, + "block": 1, + "row": 1565 + }, + { + "path": "src/accusnv/workflow/resources.py", + "sha256": "80e1f2b02881f9655caaa2000927795d720e70a363063800a033d4ddcefa9cba", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 6252 + }, + { + "path": "tests/test_annotation_alignment.py", + "sha256": "ab2f376d6e7c45773ebc2590f852ef69d224403611b3aadf990d82d1a5262f73", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 1, + "row": 6066 + }, + { + "path": "tests/test_edge_filter.py", + "sha256": "75c94f59fe2c6662c2e0f495d3dc359ad74f9b78f10dd740a75da833a57a1fa7", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 1, + "row": 6721 + }, + { + "path": "tests/test_input_validation.py", + "sha256": "c4728b331b659632c0d7e5a2d65b670c4f34964e0af6ac72d261de78f07115cf", + "language": "Python", + "lines": 165, + "truncated": false, + "block": 1, + "row": 8209 + }, + { + "path": "tests/test_path_handling.py", + "sha256": "bd2d3d712c496bd3e5f4fff2ab889c28fd798aeef826af60b8dab18f91c71136", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 1, + "row": 7157 + }, + { + "path": "tests/test_pileup_reference_base.py", + "sha256": "5fc449adca5f36921ee5fbb51d5a32a71f202bbc8105334dbb7f6319ad47a8dc", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 1, + "row": 7527 + }, + { + "path": "tests/test_sample_name_handling.py", + "sha256": "f0da2bc28ed498608a2bb7c3dfb1e0669036f972c11e97eda2bd1de456a9096d", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 1, + "row": 5931 + } + ] +} \ No newline at end of file diff --git a/manifests/64/github.com__khanlab__snakebids.json b/manifests/64/github.com__khanlab__snakebids.json new file mode 100644 index 0000000000000000000000000000000000000000..bc408b1aa33ce2694fd6f594aeb0a0aecca88733 --- /dev/null +++ b/manifests/64/github.com__khanlab__snakebids.json @@ -0,0 +1,867 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/khanlab/snakebids", + "url": "https://github.com/khanlab/snakebids", + "host": "github.com", + "commit": "1d97feeb39fde9e47b4a403c8f277bd0e8781eef", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "82d642620291a58eaa448c9de432c43dd7157d3426fa6d0f9ef0ad384afa77c4", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2090 + }, + { + "path": "README.md", + "sha256": "5f892c8872a854c9029ac77fce0c6523512d10a9e1b064122112bc2a5c7c5475", + "language": "Text", + "lines": 109, + "truncated": false, + "block": 1, + "row": 11905 + }, + { + "path": "containers/test-template/test-template.sh", + "sha256": "e8ccb3956c538d3a09f68aa65454b2f2a0322790468d1400fd02e9dc1a3ed1b0", + "language": "Shell", + "lines": 43, + "truncated": false, + "block": 1, + "row": 11574 + }, + { + "path": "docs/conf.py", + "sha256": "ad93ca652c1a772154fd9360505cbbc2638d8eb8d7c1e9ed2e6e17988ce81695", + "language": "Python", + "lines": 125, + "truncated": false, + "block": 1, + "row": 6993 + }, + { + "path": "docs/tutorial/step8/run.py", + "sha256": "a673d4de1b8f361b51be9d0534ea2c9963f68fdf5a4cb91e45e5e396c8dbc712", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 1, + "row": 5170 + }, + { + "path": "scripts/__init__.py", + "sha256": "d091529cfe095148a323f73500b2a1d11c83e5881196499a0d8dbaa0a0c8f6c5", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 1, + "row": 4995 + }, + { + "path": "scripts/update_bids.py", + "sha256": "bc6388ae11e34a11b4dd6f50cce659423353276a0dbf7494b899cdac897b3d04", + "language": "Python", + "lines": 158, + "truncated": false, + "block": 1, + "row": 7237 + }, + { + "path": "src/snakebids/__init__.py", + "sha256": "ad00a32a09b971c43fcb1458891000ac11cd247bd8d48c78effc500d4a7d6cd2", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 1, + "row": 5534 + }, + { + "path": "src/snakebids/_warningformat.py", + "sha256": "df0e5c110c1d5d14eb2073c0ffbc020e5878e6b72dfd54db7323708af048eba3", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 1, + "row": 5796 + }, + { + "path": "src/snakebids/admin.py", + "sha256": "a4abba6ed60c45e8953ae818a1a105503679c1014f94d937fb291884f280c3c4", + "language": "Python", + "lines": 136, + "truncated": false, + "block": 1, + "row": 7257 + }, + { + "path": "src/snakebids/app.py", + "sha256": "74cbaec7dc071bdc0b5f117e0695ddfe72f0f12a296117dda87875588e6bf3b4", + "language": "Python", + "lines": 158, + "truncated": false, + "block": 1, + "row": 7572 + }, + { + "path": "src/snakebids/bidsapp/__init__.py", + "sha256": "d3243ee7713fc17b8ceb2ddfff52298e3fda7f2d22bd354ec405dc626991b3cd", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 1, + "row": 5202 + }, + { + "path": "src/snakebids/bidsapp/args.py", + "sha256": "506448d89a02368163b0c618351d3a3f786ad2bfbd9bac3109e5d60f019185b9", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 1, + "row": 5440 + }, + { + "path": "src/snakebids/bidsapp/hook.py", + "sha256": "22f6145d98eb9f7b38244e105a5184483105d3b771cf0e2824f43d038beb625b", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 1, + "row": 5111 + }, + { + "path": "src/snakebids/bidsapp/hookspecs.py", + "sha256": "d123647427a40cdce9f1eb5668656e10c3a96288fd2cebeb52a7c42db014465b", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 1, + "row": 6717 + }, + { + "path": "src/snakebids/bidsapp/run.py", + "sha256": "393f4d0f79fbdf18fe8bf29fc1f027edaff88802aab098525e4c8c4d3f9d5408", + "language": "Python", + "lines": 188, + "truncated": false, + "block": 1, + "row": 7803 + }, + { + "path": "src/snakebids/cli.py", + "sha256": "020e8b9d06ea58cd0f09aab3deb2d680533cf9501181768541646def0fd7b91e", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 1, + "row": 5581 + }, + { + "path": "src/snakebids/core/__init__.py", + "sha256": "4114e9938fa2699799db0071d71b3236e66e2399ca1ca240c93b2e966520e6b4", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 1, + "row": 5392 + }, + { + "path": "src/snakebids/core/_querying.py", + "sha256": "ba76963bd5b4b8233e6c299d0c52b98963730ef6fbda1415b696024653403a9d", + "language": "Python", + "lines": 388, + "truncated": false, + "block": 1, + "row": 8913 + }, + { + "path": "src/snakebids/core/datasets.py", + "sha256": "607b707fc7a91213191cdb70aa07f4b84137e51c1083f1b4e351999aac19ec7e", + "language": "Python", + "lines": 1003, + "truncated": false, + "block": 1, + "row": 9711 + }, + { + "path": "src/snakebids/core/filtering.py", + "sha256": "34a0add1293f3a15960a388fe975e668d5f69b6a458c4572999a415fa63f2528", + "language": "Python", + "lines": 286, + "truncated": false, + "block": 1, + "row": 8354 + }, + { + "path": "src/snakebids/core/input_generation.py", + "sha256": "58c2aa25c16137064422927edf12e45664f97d80e600f54a4c8104280c430ee5", + "language": "Python", + "lines": 803, + "truncated": false, + "block": 1, + "row": 9549 + }, + { + "path": "src/snakebids/exceptions.py", + "sha256": "9bf5c8f1c206c0dc048dc173ad9258bf577ab6858a32724d440c216d977941f5", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 5835 + }, + { + "path": "src/snakebids/io/__init__.py", + "sha256": "bd7957a3c096f001f0dafc34d8b96ef3b1adda187d7fe5a688582343ccd42d9a", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 1, + "row": 5145 + }, + { + "path": "src/snakebids/io/config.py", + "sha256": "de3689ff8a7459f45631267ac1b8452c18a7a06f27b867a64edb0eafb7819dea", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 1, + "row": 5811 + }, + { + "path": "src/snakebids/io/console.py", + "sha256": "30f60396252015b89697786d4baa9535fab30f4ad6337f8e21720fc524081cba", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 1, + "row": 7183 + }, + { + "path": "src/snakebids/io/printing.py", + "sha256": "6bf0a547818395184760f9fa285a710e72659f483ef4a11d23c9161e43263d52", + "language": "Python", + "lines": 133, + "truncated": false, + "block": 1, + "row": 7133 + }, + { + "path": "src/snakebids/io/yaml.py", + "sha256": "a1e1be9445c27052bcec3eca739ee284ace113db555ebac612c2033f47130b41", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 1, + "row": 5728 + }, + { + "path": "src/snakebids/jinja2_ext/__init__.py", + "sha256": "bd7957a3c096f001f0dafc34d8b96ef3b1adda187d7fe5a688582343ccd42d9a", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 1, + "row": 5145 + }, + { + "path": "src/snakebids/jinja2_ext/colorama.py", + "sha256": "8ee74346c74834c6fed2f51defec46e8b67f2818ce136f74c53473691fd4a807", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 1, + "row": 5265 + }, + { + "path": "src/snakebids/jinja2_ext/format_dep_spec.py", + "sha256": "911b24d6e621bdbddd1d0c21cf8993c285ceac14d8647308889c2a3048c3c4ec", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 1, + "row": 5670 + }, + { + "path": "src/snakebids/jinja2_ext/snakebids_version.py", + "sha256": "246b869be24d3c52c5a14fd79695c93c2508a23aa03841726a3d4c774b430590", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 1, + "row": 5761 + }, + { + "path": "src/snakebids/jinja2_ext/toml_encode.py", + "sha256": "94aa5b2b2d54c039a4dbddcf671a1fd9bce30a499b927cc059544e9fc7033d71", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 1, + "row": 5631 + }, + { + "path": "src/snakebids/jinja2_ext/vcs.py", + "sha256": "3f96932ded49e62df7fedc07e48f19cd70c50e2627516a4a4f67817592f05940", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 1, + "row": 6486 + }, + { + "path": "src/snakebids/paths/__init__.py", + "sha256": "f74b41f8f0dc28907121aef6706eb3b8503b931ab43a0013248de4b99447c381", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 1, + "row": 5317 + }, + { + "path": "src/snakebids/paths/_config.py", + "sha256": "1b148828c344fd6034601013692fa37519113cde99d9a8d22c322f9be9a2a99d", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 1, + "row": 6064 + }, + { + "path": "src/snakebids/paths/_factory.py", + "sha256": "8320503b30f727ca551e467100b855b2da1ba16aff1a48fe6cc51c3735921758", + "language": "Python", + "lines": 374, + "truncated": false, + "block": 1, + "row": 8816 + }, + { + "path": "src/snakebids/paths/_presets.py", + "sha256": "4527a584f2486132bab7daefb3c477dd5d800541d28592a102ae851f488d7921", + "language": "Python", + "lines": 172, + "truncated": false, + "block": 1, + "row": 7838 + }, + { + "path": "src/snakebids/paths/_templates/__init__.py", + "sha256": "bd7957a3c096f001f0dafc34d8b96ef3b1adda187d7fe5a688582343ccd42d9a", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 1, + "row": 5145 + }, + { + "path": "src/snakebids/paths/_templates/spec_func.py", + "sha256": "86779e56ec7a406a3a967d43276fd429a59cf3f717d88a4d3feb8b69d20846ca", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 1, + "row": 6775 + }, + { + "path": "src/snakebids/paths/_utils.py", + "sha256": "b43b6f64254032c053b15de8fd4abb205f25726f402ef9ce468aee61256cfa40", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 1, + "row": 6998 + }, + { + "path": "src/snakebids/paths/resources/__init__.py", + "sha256": "e4ada44d7d75795647444c9654e449644e4f7cd074416d9eb333affd3c42b1a6", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 1, + "row": 5130 + }, + { + "path": "src/snakebids/paths/specs.py", + "sha256": "7f1f3a3521e8ef4079278f76d9e721ce893fda1164cf7e13f6c28c7de33cd7c5", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 1, + "row": 6021 + }, + { + "path": "src/snakebids/plugins/__init__.py", + "sha256": "f5d11a38ff9724ef52c53b7507b815336159aa7899b99e364f531efbb774bc94", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 1, + "row": 5402 + }, + { + "path": "src/snakebids/plugins/base.py", + "sha256": "1ede0b3861d063dff284a91d3af790d31f3610dbf6e76ccaf4bf5eb3dc74620b", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 1, + "row": 7034 + }, + { + "path": "src/snakebids/plugins/bidsargs.py", + "sha256": "84258dc549cdcaab2d955d804d8d25406b4b9c4f6cb6ac7d3e0ffbdda7002369", + "language": "Python", + "lines": 212, + "truncated": false, + "block": 1, + "row": 8249 + }, + { + "path": "src/snakebids/plugins/cli_config.py", + "sha256": "80fd41d10105b91334290c5b5c3b7c6cf2e5f853e481d5fb85c873bc307d5a86", + "language": "Python", + "lines": 128, + "truncated": false, + "block": 1, + "row": 7162 + }, + { + "path": "src/snakebids/plugins/component_edit.py", + "sha256": "25e47ca2a4e7257ac51be1f88f5c10ff1b77d6893620ad7b39d7e8c969e61bef", + "language": "Python", + "lines": 257, + "truncated": false, + "block": 1, + "row": 8470 + }, + { + "path": "src/snakebids/plugins/pybidsdb.py", + "sha256": "65c00e4bcd90d7f64c09026ec6445f2c706ec0cec3697e2d54bbccb04cb871ee", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 1, + "row": 7083 + }, + { + "path": "src/snakebids/plugins/snakemake.py", + "sha256": "b4b1a902c3d29aaeef037a7a57600179c7b3b1e6a93c9de910665273d5ee9a20", + "language": "Python", + "lines": 339, + "truncated": false, + "block": 1, + "row": 8688 + }, + { + "path": "src/snakebids/plugins/validator.py", + "sha256": "9b9a665cd6325ae3ca87b5cf181c544923e5a11f6aeda1f3ecb179c4571abfb7", + "language": "Python", + "lines": 108, + "truncated": false, + "block": 1, + "row": 6987 + }, + { + "path": "src/snakebids/plugins/version.py", + "sha256": "09113c1f9c7c5b173c1e990d979d255670f19281b0ca65ae23c6a451479bcbd5", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 1, + "row": 6171 + }, + { + "path": "src/snakebids/resources/__init__.py", + "sha256": "8e5c2f5aea99ec789bf43dc640d54f230e33b03081d30ca7399792c7c55ee0b5", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 1, + "row": 5097 + }, + { + "path": "src/snakebids/snakemake_compat.py", + "sha256": "01de158238f16c719ee8d87c3baae699915afbc34a749e763c00056961a76bce", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 1, + "row": 5602 + }, + { + "path": "src/snakebids/types.py", + "sha256": "c375b78fbc6a3feafe4924fa1f61aeadf023b2924b433697cc54419853754170", + "language": "Python", + "lines": 148, + "truncated": false, + "block": 1, + "row": 7404 + }, + { + "path": "src/snakebids/utils/__init__.py", + "sha256": "bd7957a3c096f001f0dafc34d8b96ef3b1adda187d7fe5a688582343ccd42d9a", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 1, + "row": 5145 + }, + { + "path": "src/snakebids/utils/containers.py", + "sha256": "14143bdb4022e26d1dee91609d821600dbdc15425667e6376f5d40bae1a7cfd0", + "language": "Python", + "lines": 231, + "truncated": false, + "block": 1, + "row": 8054 + }, + { + "path": "src/snakebids/utils/output.py", + "sha256": "767c2066b4eb4d22ddb983b0c53992af98c2841da8ad7e8b78e21eb344af5e4c", + "language": "Python", + "lines": 134, + "truncated": false, + "block": 1, + "row": 7139 + }, + { + "path": "src/snakebids/utils/sb_itertools.py", + "sha256": "a31baaea2a41143fc38d8314a953d98af9a1d68ebde9807dbfe84113f6432a9b", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 1, + "row": 5378 + }, + { + "path": "src/snakebids/utils/snakemake_io.py", + "sha256": "e674728ba68cdad05d860e1b2054fba8c66187f0fe4aaed5dd8860e5ec608c43", + "language": "Python", + "lines": 156, + "truncated": false, + "block": 1, + "row": 7430 + }, + { + "path": "src/snakebids/utils/snakemake_templates.py", + "sha256": "92f57b8d4d7504d54c22eca876720f6661873f69e31b12cbfadd20dd444bf6c2", + "language": "Python", + "lines": 418, + "truncated": false, + "block": 1, + "row": 9025 + }, + { + "path": "src/snakebids/utils/user_property.py", + "sha256": "5e7ef7f93b5374923da7e79cbdf7e396d2fbe25f939cb74d45b6eeed793bd74c", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 1, + "row": 5065 + }, + { + "path": "src/snakebids/utils/utils.py", + "sha256": "165584409a4024514ad8dc7245d12b0dffae0f14687752244c281ceb6006e251", + "language": "Python", + "lines": 338, + "truncated": false, + "block": 1, + "row": 8509 + }, + { + "path": "tests/__init__.py", + "sha256": "58894a5a88f644bdcb2073c03af902bc3a9e5100a975734b89dccac432168111", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 1, + "row": 5135 + }, + { + "path": "tests/conftest.py", + "sha256": "e738f39859693cd5f176c873a652c12a8ddecf21562ac80498dd49e2aa767f6b", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 1, + "row": 6424 + }, + { + "path": "tests/helpers.py", + "sha256": "d2e3df37726e21f59204e55c2a99b332906e01f2885b8f524533f13371d91bee", + "language": "Python", + "lines": 359, + "truncated": false, + "block": 1, + "row": 8646 + }, + { + "path": "tests/strategies.py", + "sha256": "abdace999bf733410176f6b65f95f1231ba01b092a010e178d6dfddd3dda627e", + "language": "Python", + "lines": 693, + "truncated": false, + "block": 1, + "row": 9331 + }, + { + "path": "tests/test_admin.py", + "sha256": "a77691df2993e04e003098d7c3e31bb2950476ea5f7ac6b8093c1b3c86eb5294", + "language": "Python", + "lines": 184, + "truncated": false, + "block": 1, + "row": 7693 + }, + { + "path": "tests/test_app.py", + "sha256": "f002d360c7234f1de5724eb4897bc29310b9e802c2c5fc56a8b4b1576823c6b6", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 1, + "row": 7250 + }, + { + "path": "tests/test_bidsapp.py", + "sha256": "7bb7a5fc9a4fc0a66242baed8489d45c85d308be2a87129c603a179ed9c8c1d4", + "language": "Python", + "lines": 223, + "truncated": false, + "block": 1, + "row": 7934 + }, + { + "path": "tests/test_datasets.py", + "sha256": "1430552c048368a98c37f570de9a7c7e7ab707f21dc1bb9421c920db443d8674", + "language": "Python", + "lines": 1008, + "truncated": false, + "block": 1, + "row": 9689 + }, + { + "path": "tests/test_filtering.py", + "sha256": "97734e8b5f0c3a82121d6714179c71ba1b83729d48a2290673cdad3b5eb815fb", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 1, + "row": 6759 + }, + { + "path": "tests/test_generate_inputs.py", + "sha256": "f0d4c2f34148b8e5ba40c3b585660d07821689d85ac9681e5ae53524d8715036", + "language": "Python", + "lines": 1722, + "truncated": false, + "block": 1, + "row": 9805 + }, + { + "path": "tests/test_output.py", + "sha256": "9693eb89042820d611f4d69dbc43c8dcafb78fa9a126ac78338979c662e41b98", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 1, + "row": 6975 + }, + { + "path": "tests/test_paths/__init__.py", + "sha256": "58894a5a88f644bdcb2073c03af902bc3a9e5100a975734b89dccac432168111", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 1, + "row": 5135 + }, + { + "path": "tests/test_paths/test_bids.py", + "sha256": "eb01e31b38ed45f34fc1125bc8cbc224d7473e7bf85e6e372f17c8c5953fa98d", + "language": "Python", + "lines": 481, + "truncated": false, + "block": 1, + "row": 9226 + }, + { + "path": "tests/test_paths/test_specs.py", + "sha256": "9d69a09710a14d0cc2600a11c0c427fe91e0f5e216f225d66f5825c49d6e889b", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 1, + "row": 7448 + }, + { + "path": "tests/test_plugins/__init__.py", + "sha256": "30a242296c71a3f53e0ddd54826f71fde9a35a339b5df371f92ce89942f80fc6", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 1, + "row": 5105 + }, + { + "path": "tests/test_plugins/test_bidsargs.py", + "sha256": "810d23af53f849d66b4ccc54eac928123d2236e2ca988feebb96385f487e275c", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 1, + "row": 6988 + }, + { + "path": "tests/test_plugins/test_cli_config.py", + "sha256": "fa48840211d09ae4737d71e20dde8fb98a13517121f368a226df1233b96c297c", + "language": "Python", + "lines": 128, + "truncated": false, + "block": 1, + "row": 7179 + }, + { + "path": "tests/test_plugins/test_component_edit.py", + "sha256": "379204eb6ef4580a6eb321ee694c6e266acdb8f40449e1dec3bfd5447634f6cc", + "language": "Python", + "lines": 411, + "truncated": false, + "block": 1, + "row": 9043 + }, + { + "path": "tests/test_plugins/test_pybidsdb.py", + "sha256": "0ce7d02e6032d809a180a5fb46a7e3ec1a05bb93594d86f0ec5cd98469869e82", + "language": "Python", + "lines": 136, + "truncated": false, + "block": 1, + "row": 7346 + }, + { + "path": "tests/test_plugins/test_snakemake.py", + "sha256": "614970a7651760e6175eb3eee4ef84fd9c06b566e5eb5a9dda0d3cc378beaade", + "language": "Python", + "lines": 502, + "truncated": false, + "block": 1, + "row": 9188 + }, + { + "path": "tests/test_plugins/test_validate_plugin.py", + "sha256": "df057318f117f4b417600a172a954b9e6937e155e9ecf5e7551841799182fa35", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 1, + "row": 6706 + }, + { + "path": "tests/test_plugins/test_version.py", + "sha256": "5cbe18904790f9c5c1b4cd10d498d58a312eb361f4f7beb4f8cd0744dae0b25d", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 1, + "row": 6240 + }, + { + "path": "tests/test_printing.py", + "sha256": "3b6765b4a5deeae6454d117a477587f1c5f6c8e3ecb71ea914ba56f263968a7f", + "language": "Python", + "lines": 224, + "truncated": false, + "block": 1, + "row": 8184 + }, + { + "path": "tests/test_querying.py", + "sha256": "2a3522caeb88b48f3437f07f994c51fd9585a1fdb95f71f54fcba806c177d644", + "language": "Python", + "lines": 580, + "truncated": false, + "block": 1, + "row": 9385 + }, + { + "path": "tests/test_snakemake_io.py", + "sha256": "60761d560dcd6f66ed5d52366dbaabb06740e95b33e7732beb88c592f77cddef", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 1, + "row": 5929 + }, + { + "path": "tests/test_snakemake_templates/__init__.py", + "sha256": "30a242296c71a3f53e0ddd54826f71fde9a35a339b5df371f92ce89942f80fc6", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 1, + "row": 5105 + }, + { + "path": "tests/test_snakemake_templates/strategies.py", + "sha256": "70aa15bef09282d1876728ad3eac45cc1b0c73dcad3cc42d5ee1d7f0c074fdc4", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 1, + "row": 5916 + }, + { + "path": "tests/test_snakemake_templates/test_snakemake_formatter.py", + "sha256": "8a1c44cb5d8ed3c04c105d2351728427b45a6d144213548df808fbcba1b39596", + "language": "Python", + "lines": 807, + "truncated": false, + "block": 1, + "row": 9617 + }, + { + "path": "tests/test_snakemake_templates/test_snakemake_wildcards.py", + "sha256": "a37ba042eef240c53dcc1d168183365756419693dfe7f82733558c2569bab65b", + "language": "Python", + "lines": 411, + "truncated": false, + "block": 1, + "row": 8998 + }, + { + "path": "tests/test_template.py", + "sha256": "e3c592d36851dca5f76ad363b2229b406b5ddd29c07d048566dd36c03b53506a", + "language": "Python", + "lines": 381, + "truncated": false, + "block": 1, + "row": 8789 + }, + { + "path": "tests/test_utils.py", + "sha256": "28e1ee39da882d62f630ff97b0b43b421b86d33c419a98bd218b9991286dbed8", + "language": "Python", + "lines": 347, + "truncated": false, + "block": 1, + "row": 8851 + }, + { + "path": "tests/test_yaml.py", + "sha256": "d5e99d09cbbe80f1a8219b37eee1ed3a6541500186ca42259af1edbee82bf8c1", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 1, + "row": 7021 + } + ] +} \ No newline at end of file diff --git a/manifests/64/github.com__lugia-xiao__ndreamer.json b/manifests/64/github.com__lugia-xiao__ndreamer.json new file mode 100644 index 0000000000000000000000000000000000000000..5b2004f04ffc1049cdd9ed2a68af71e248a3fa65 --- /dev/null +++ b/manifests/64/github.com__lugia-xiao__ndreamer.json @@ -0,0 +1,165 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/lugia-xiao/ndreamer", + "url": "https://github.com/lugia-xiao/NDreamer", + "host": "github.com", + "commit": "dfff8e9fb8c0a9bb246468d06d42aee5e666b1bf", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "81cbae84a29ce7e770bf2bc7b178e50bda0ce8de6067aba661b0bc7b05b562f8", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2237 + }, + { + "path": "README.md", + "sha256": "8d2d6aeff1d2e4001018b57424a12554d958dcf45335ab09bc5246312a91995a", + "language": "Text", + "lines": 152, + "truncated": false, + "block": 1, + "row": 11964 + }, + { + "path": "ndreamer/DL_loss_func.py", + "sha256": "fc0e197ac19324f4ede3ed33f6f2714d1194742e5e1ed9f0d93f1ce4fa7c2eb1", + "language": "Python", + "lines": 701, + "truncated": false, + "block": 1, + "row": 9632 + }, + { + "path": "ndreamer/__init__.py", + "sha256": "6a2484707b6a554e187cd11418f6682dc2bf893388a30031bb4189ca085d3496", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5022 + }, + { + "path": "ndreamer/data_preprocess.py", + "sha256": "81f10ec72a55e00870d76dea47aa8df5828c8e7a5ce34e97ac91bbc63711aa49", + "language": "Python", + "lines": 208, + "truncated": false, + "block": 1, + "row": 8418 + }, + { + "path": "ndreamer/matching.py", + "sha256": "c05c63a51faea663ad83ac72a1327ae6b8b22180a2e555d769907474b4e8f745", + "language": "Python", + "lines": 347, + "truncated": false, + "block": 1, + "row": 8899 + }, + { + "path": "ndreamer/metrics.py", + "sha256": "b1db175b9e189ea39a329295a3e70c70602b3d35862dcce5725945320058d84e", + "language": "Python", + "lines": 278, + "truncated": false, + "block": 1, + "row": 8522 + }, + { + "path": "ndreamer/model.py", + "sha256": "84c4c12bb49b4780faa0842d4399fa6d63d6dbff57e37080ee5dfeeaa0057ea7", + "language": "Python", + "lines": 482, + "truncated": false, + "block": 1, + "row": 9535 + }, + { + "path": "ndreamer/model_DL.py", + "sha256": "fdb103631ea3250db1ecfe7e669e18491baae825eba1622cee7646d119e588f4", + "language": "Python", + "lines": 396, + "truncated": false, + "block": 1, + "row": 9190 + }, + { + "path": "ndreamer/pipeline.py", + "sha256": "4513ea0b49cc39dd78c4944a24bc9aa88dec425f9cbf7331661891834f1e6c31", + "language": "Python", + "lines": 362, + "truncated": false, + "block": 1, + "row": 9359 + }, + { + "path": "ndreamer/plot.py", + "sha256": "c1a700c22e93d052ff9574daf29d17e20fd76e2b60f5f53be1385a791bdcf054", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 1, + "row": 6594 + }, + { + "path": "ndreamer/single_cell_utils.py", + "sha256": "b3c038a8d0d7edcd821680e7017813b0cccf145159a134d29eb9d512f6be563d", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 1, + "row": 7613 + }, + { + "path": "ndreamer/statistics.py", + "sha256": "744ce35c070e6176ac74eb64c0f065ecebf246cf0331c0b88657f3590fc5f1b2", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 1, + "row": 7279 + }, + { + "path": "ndreamer/test.py", + "sha256": "dfab96f7458836fad35f6189328aa9ac0e245f26ec5fa39699a8773ec3451596", + "language": "Python", + "lines": 337, + "truncated": false, + "block": 1, + "row": 8838 + }, + { + "path": "setup.py", + "sha256": "4c2fe4e8c158961709aefac3206f1ea3879b57d964ef0e2e02811652953fa86c", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 1, + "row": 5591 + }, + { + "path": "tutorial_case_control_T1D.ipynb", + "sha256": "1d859fed8242db9377f84a13f24f3eb513ec2f8fefeb778fd452dc839408f75a", + "language": "Jupyter", + "lines": 107, + "truncated": false, + "block": 1, + "row": 1809 + }, + { + "path": "tutorial_experimental_PBMC.ipynb", + "sha256": "7e9af1af13185bea6dced7ca69ba9d94e1dae0017de3e5f0a372ac911ecbff24", + "language": "Jupyter", + "lines": 267, + "truncated": false, + "block": 1, + "row": 1934 + } + ] +} \ No newline at end of file diff --git a/manifests/65/github.com__ninaomejc__eneegma.json b/manifests/65/github.com__ninaomejc__eneegma.json new file mode 100644 index 0000000000000000000000000000000000000000..b81c6273556dc12c889ab74dc0a03915f620ef51 --- /dev/null +++ b/manifests/65/github.com__ninaomejc__eneegma.json @@ -0,0 +1,759 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ninaomejc/eneegma", + "url": "https://github.com/NinaOmejc/ENEEGMA", + "host": "github.com", + "commit": "6001d08d033ca05c36517b5f59cde58156cfe93e", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "1a282c662350a7c3233f92ba9f2b8833cd0d675ab554e87064ea7926747f83d8", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1124 + }, + { + "path": "README.md", + "sha256": "7818efd232d3cb7137388fb8cec7262c8667fa6d7dccc4da87e2960ac95ee043", + "language": "Text", + "lines": 148, + "truncated": false, + "block": 2, + "row": 2640 + }, + { + "path": "examples/example1_settings.jl", + "sha256": "10aeb9dbe37c81adf83bb259e84211164b17660ac38cb115ac23c5b76997f423", + "language": "Julia", + "lines": 41, + "truncated": false, + "block": 2, + "row": 936 + }, + { + "path": "examples/example2_simulation.jl", + "sha256": "766468d8e99ab3c5747120f039b2411cb25cd083c8ac816108d7034d24aa8bd6", + "language": "Julia", + "lines": 85, + "truncated": false, + "block": 2, + "row": 954 + }, + { + "path": "examples/example3_grammar_sampling.jl", + "sha256": "0089e6ec0da10d9946091747b7afe01f68bf95aa308bec2c7b6b06217e0606b1", + "language": "Julia", + "lines": 61, + "truncated": false, + "block": 2, + "row": 946 + }, + { + "path": "examples/example4a_optimization_of_canonical_model.jl", + "sha256": "8636d54de853e5dcfc122fd5ee193f9a37ac2b4abb9f1428067b1f84c39d6c5f", + "language": "Julia", + "lines": 67, + "truncated": false, + "block": 2, + "row": 945 + }, + { + "path": "examples/example4b_optimization_of_sampled_model.jl", + "sha256": "bd33fbaf55802c327910b42563ae87c2a947d1d23c9e33d097f3f5b623c77b60", + "language": "Julia", + "lines": 77, + "truncated": false, + "block": 2, + "row": 948 + }, + { + "path": "examples/example4c_optimization_of_two_nodes.jl", + "sha256": "0b2fe250d681c1e41e3e630ca376af7b22d65e1c37b8f160c0f31455ee06c551", + "language": "Julia", + "lines": 84, + "truncated": false, + "block": 2, + "row": 951 + }, + { + "path": "examples/example5_hyperparam_optimization.jl", + "sha256": "b439df8213fcb0885c58c692082a878627665b41667129d765c3af3f65d35094", + "language": "Julia", + "lines": 70, + "truncated": false, + "block": 2, + "row": 940 + }, + { + "path": "models/arm.jl", + "sha256": "dbc89bec9d11e60010f609c8e3e96c29f8d2eacdd19f84e30325c27f4de7ea23", + "language": "Julia", + "lines": 85, + "truncated": false, + "block": 2, + "row": 941 + }, + { + "path": "models/do.jl", + "sha256": "05f6239fead30eff183c26fd4fe7858a8933fb40bffc7ad1aef0e7518e4fee19", + "language": "Julia", + "lines": 48, + "truncated": false, + "block": 2, + "row": 928 + }, + { + "path": "models/fhn.jl", + "sha256": "399c15d62fec407f2ce01d347d226ccb8895bd734c0fb1e2dcbce63b13a50107", + "language": "Julia", + "lines": 48, + "truncated": false, + "block": 2, + "row": 925 + }, + { + "path": "models/ho.jl", + "sha256": "f03942a9cc4563096664b1c328fbfee2202b254b9463975bcd67b7e3c57c8dab", + "language": "Julia", + "lines": 56, + "truncated": false, + "block": 2, + "row": 932 + }, + { + "path": "models/jr.jl", + "sha256": "4b801cd58a35f1cd0afc78a221e4a000fb12f6cd75f7bc9fde0d613b923017ab", + "language": "Julia", + "lines": 71, + "truncated": false, + "block": 2, + "row": 938 + }, + { + "path": "models/lb.jl", + "sha256": "8a6825af73d24b26e313c2d160480bb87ab515635960a6b5ff5ae5e6c23eef00", + "language": "Julia", + "lines": 119, + "truncated": false, + "block": 2, + "row": 956 + }, + { + "path": "models/lw.jl", + "sha256": "7afc538a5fbe8c97ff0209db751256ffc011742f885b9968baee603e4bd67177", + "language": "Julia", + "lines": 108, + "truncated": false, + "block": 2, + "row": 958 + }, + { + "path": "models/mdf.jl", + "sha256": "d95525643b48ff0590b6e9664c545a5ed670e03eacf3eb3e67a4536df41cfa66", + "language": "Julia", + "lines": 111, + "truncated": false, + "block": 2, + "row": 949 + }, + { + "path": "models/mpr.jl", + "sha256": "cb8d4beb3362faba9d12cc8117fdfd6f959f9fa4ceaa6c667a1eb4fca73f5f82", + "language": "Julia", + "lines": 97, + "truncated": false, + "block": 2, + "row": 943 + }, + { + "path": "models/rrw.jl", + "sha256": "a71a6e72e00d2f9bea9a1876e35f2e91975d960e6df91044f4b7496601715088", + "language": "Julia", + "lines": 101, + "truncated": false, + "block": 2, + "row": 947 + }, + { + "path": "models/stl.jl", + "sha256": "4763879c834636ce14ceafca119f1bbb731fb4e64280dbbfe652e70cc976ad08", + "language": "Julia", + "lines": 44, + "truncated": false, + "block": 2, + "row": 930 + }, + { + "path": "models/utils_plot.jl", + "sha256": "bb5c315c3ede4dd75c80cbc4d5b31f9f720dc367916389c389e3addc23a9744e", + "language": "Julia", + "lines": 109, + "truncated": false, + "block": 2, + "row": 955 + }, + { + "path": "models/vdp.jl", + "sha256": "80594eb58eef8c8e649831f1e73e7e00f575caad781e695786eab1b12a985f97", + "language": "Julia", + "lines": 43, + "truncated": false, + "block": 2, + "row": 927 + }, + { + "path": "models/w.jl", + "sha256": "191f7aa08e92abcc728e724ca8ce15ba354b170f5dba8758a7f536e39f224cad", + "language": "Julia", + "lines": 84, + "truncated": false, + "block": 2, + "row": 942 + }, + { + "path": "models/wc.jl", + "sha256": "1324bfe6834bc3edafe95bd4e28021b62c91c20a14fd9807f3a9d262212d3f51", + "language": "Julia", + "lines": 55, + "truncated": false, + "block": 2, + "row": 935 + }, + { + "path": "models/ww.jl", + "sha256": "761595b3ce49668aa950e7769cb1febf139dd927169ff4101055035752e27823", + "language": "Julia", + "lines": 210, + "truncated": false, + "block": 2, + "row": 961 + }, + { + "path": "models/wwr.jl", + "sha256": "875ae1538ad73aa7189a6da022bbe90ae5d9f6881fb406985a7c1976ea3c7f12", + "language": "Julia", + "lines": 61, + "truncated": false, + "block": 2, + "row": 934 + }, + { + "path": "src/ENEEGMA.jl", + "sha256": "09ac0d0d973a21ee6b7fdb1d0763b534e87a87e5490b56ec01e9aae081d30f7f", + "language": "Julia", + "lines": 213, + "truncated": false, + "block": 2, + "row": 974 + }, + { + "path": "src/analyze/clustering.jl", + "sha256": "b6f3c27061a1827c463c9c2fd7dddef1db7f93221652e227d6d8e50c519d8152", + "language": "Julia", + "lines": 86, + "truncated": false, + "block": 2, + "row": 937 + }, + { + "path": "src/analyze/complexity_measures.jl", + "sha256": "9ca90ba7e21b9dd95df688ab7a6dcf26be016e33a67f7afde5ae6fe99cba2d36", + "language": "Julia", + "lines": 106, + "truncated": false, + "block": 2, + "row": 952 + }, + { + "path": "src/analyze/distance_measures.jl", + "sha256": "ec53b9835ffdd5c4b277245cd2f60a1dda1dcbb578d28df8d748a434c7e3824b", + "language": "Julia", + "lines": 387, + "truncated": false, + "block": 2, + "row": 977 + }, + { + "path": "src/build/build_network.jl", + "sha256": "774e56f50f6e681077db331e7abc82f0276b87a14aa6ae1729a22570fb6724fc", + "language": "Julia", + "lines": 888, + "truncated": false, + "block": 2, + "row": 995 + }, + { + "path": "src/build/build_node.jl", + "sha256": "706d12e71394e7e5fd218bc59d8f0d2614b35350e894d84d797e105351f10987", + "language": "Julia", + "lines": 642, + "truncated": false, + "block": 2, + "row": 991 + }, + { + "path": "src/build/build_population.jl", + "sha256": "c97d6bb1cc14933b00104ebee613050d0b1b2a0401af187571efc9e491b2ad0f", + "language": "Julia", + "lines": 167, + "truncated": false, + "block": 2, + "row": 968 + }, + { + "path": "src/build/build_utils.jl", + "sha256": "b1a203b2c02122b361d98485570a8bcf84c217aafec560a7db7b327542bec38b", + "language": "Julia", + "lines": 504, + "truncated": false, + "block": 2, + "row": 983 + }, + { + "path": "src/build/canonical_node_models.jl", + "sha256": "fd0206b4f8904483c97eab429b2a9ba722cac36acee72ac9c35787d4e5d811e3", + "language": "Julia", + "lines": 1488, + "truncated": false, + "block": 2, + "row": 1000 + }, + { + "path": "src/build/connectivity_functions.jl", + "sha256": "bd74119409be7278742ceaee15c35aa7b35919a62d36036094ff04157fcdf375", + "language": "Julia", + "lines": 334, + "truncated": false, + "block": 2, + "row": 980 + }, + { + "path": "src/build/connectivity_motifs.jl", + "sha256": "099f65df19ae78b6f2b105693cf2dcbfc599ac83f3d897b3b77cc2f0d0869f85", + "language": "Julia", + "lines": 882, + "truncated": false, + "block": 2, + "row": 987 + }, + { + "path": "src/build/input_dynamics.jl", + "sha256": "2437079202ff8d58e23c5c99c0fd7cf4349714a4ab1a557518db9d1ed3d03d72", + "language": "Julia", + "lines": 792, + "truncated": false, + "block": 2, + "row": 994 + }, + { + "path": "src/build/output_dynamics.jl", + "sha256": "32ef36fbb47653ea211b7d2c6f2664a3bb4bd5b2d2fa3b63e13179125938aae2", + "language": "Julia", + "lines": 136, + "truncated": false, + "block": 2, + "row": 965 + }, + { + "path": "src/grammar/grammar.jl", + "sha256": "f2159987290f2d6d8fc346c92bd89ab1a533277b93958aeb101c7459e5a85b7f", + "language": "Julia", + "lines": 762, + "truncated": false, + "block": 2, + "row": 989 + }, + { + "path": "src/grammar/grammar_utils.jl", + "sha256": "6bb3da37e594fc359db8c46fe9c96b0df9d4c76cdea30c0ab304119889ba0e7f", + "language": "Julia", + "lines": 139, + "truncated": false, + "block": 2, + "row": 957 + }, + { + "path": "src/grammar/known_models_parse_trees.jl", + "sha256": "0b72aeee8601388cce1757d990102c1657252a5cc40ecdff903201a6c517e159", + "language": "Julia", + "lines": 74, + "truncated": false, + "block": 2, + "row": 959 + }, + { + "path": "src/optimize/data_preparation.jl", + "sha256": "a7f15a59562b2933c28e28a80157ab0fd5d6b8ee31ab3dd907f8bbb523515d2c", + "language": "Julia", + "lines": 884, + "truncated": false, + "block": 2, + "row": 993 + }, + { + "path": "src/optimize/evaluation.jl", + "sha256": "e0dadc4ae7d5f57c8d6d4552888ab4cd63a04baad6810665039440a34b685855", + "language": "Julia", + "lines": 350, + "truncated": false, + "block": 2, + "row": 978 + }, + { + "path": "src/optimize/hyperparameter_sweep.jl", + "sha256": "c4deb56191f38b2c5536004695153a913dbb38ae5dfefab478e26f5091842887", + "language": "Julia", + "lines": 219, + "truncated": false, + "block": 2, + "row": 972 + }, + { + "path": "src/optimize/losses.jl", + "sha256": "619066090d90ea311adbc525f1f4cfcb3b2ae618e2c3cd6784af6c5e807c9be2", + "language": "Julia", + "lines": 1468, + "truncated": false, + "block": 2, + "row": 999 + }, + { + "path": "src/optimize/optimization_utils.jl", + "sha256": "16edb4fed7bd3712a999536cf0dfedb09dd86815ddedd1f6d88bc89bfc73af28", + "language": "Julia", + "lines": 483, + "truncated": false, + "block": 2, + "row": 982 + }, + { + "path": "src/optimize/optimize_network.jl", + "sha256": "c63a013f0ff009748d210a8e5dc7c29296bccf0253e92a16af1339150e0e68b8", + "language": "Julia", + "lines": 673, + "truncated": false, + "block": 2, + "row": 992 + }, + { + "path": "src/optimize/phase_optimization_plots.jl", + "sha256": "a2f4f25c57cb28b27dee497fadb2207f2c7cb84277b89ae543a2ddfcb74a0798", + "language": "Julia", + "lines": 389, + "truncated": false, + "block": 2, + "row": 981 + }, + { + "path": "src/optimize/reparametrization.jl", + "sha256": "d10e2c0d4bdecca9fcdab1d29f1bc664048b188864bec3d5d305b66065a2360a", + "language": "Julia", + "lines": 553, + "truncated": false, + "block": 2, + "row": 985 + }, + { + "path": "src/optimize/save_optimization_results.jl", + "sha256": "ab6c89289c7451f3a3f7ef43b4d129a19070a6b0318557f8832dc3b5680cef4c", + "language": "Julia", + "lines": 1466, + "truncated": false, + "block": 2, + "row": 1001 + }, + { + "path": "src/simulate/save_simulation_results.jl", + "sha256": "f3180aac500a14ec3f03016afae6feaaaa1d8bc992e7afb336d870ee65245f8a", + "language": "Julia", + "lines": 214, + "truncated": false, + "block": 2, + "row": 975 + }, + { + "path": "src/simulate/simulate_network.jl", + "sha256": "db39ddf7ee9b8c700cce639867b6402117ce1d3985e6f5538ce09398cb3781a0", + "language": "Julia", + "lines": 505, + "truncated": false, + "block": 2, + "row": 986 + }, + { + "path": "src/types/abstract_types.jl", + "sha256": "52b396e146231979454b9c248da765bd68e3edbe2c47d0f4c9abda120b265682", + "language": "Julia", + "lines": 8, + "truncated": false, + "block": 2, + "row": 922 + }, + { + "path": "src/types/bounds.jl", + "sha256": "af6d9686edd688bb8963ba2a13d3794a8ac95ccf47925a9de005b0cba04039fb", + "language": "Julia", + "lines": 709, + "truncated": false, + "block": 2, + "row": 990 + }, + { + "path": "src/types/data.jl", + "sha256": "637bd81c39248f9b92475a686d9fbe8876628d503a1dc248ea894ed0c8b35dd8", + "language": "Julia", + "lines": 154, + "truncated": false, + "block": 2, + "row": 966 + }, + { + "path": "src/types/network_types.jl", + "sha256": "3a613b2d74fd61db91aa63bea6569aaf04c8d7ae0420cce1d988989362034a58", + "language": "Julia", + "lines": 394, + "truncated": false, + "block": 2, + "row": 979 + }, + { + "path": "src/types/optimization_types.jl", + "sha256": "f38b870db8aecf20d04327786c0e37aaa0e94fc85eecc7405ee937b8d6c48ae6", + "language": "Julia", + "lines": 117, + "truncated": false, + "block": 2, + "row": 950 + }, + { + "path": "src/types/params.jl", + "sha256": "38fbf0bff38b7400195e88c147f68c15bc69d208d0dcdaaddf1683c8c443faa5", + "language": "Julia", + "lines": 1317, + "truncated": false, + "block": 2, + "row": 997 + }, + { + "path": "src/types/settings.jl", + "sha256": "bfed058a3b5c9ac33d91e125e66c01295555db2abbe78ec9ff512af8a2938a7a", + "language": "Julia", + "lines": 1666, + "truncated": false, + "block": 2, + "row": 1002 + }, + { + "path": "src/types/variables.jl", + "sha256": "53f94db9487b1173a24834879a71541b014f7f47ebd06aa76d328afaabc991b0", + "language": "Julia", + "lines": 686, + "truncated": false, + "block": 2, + "row": 988 + }, + { + "path": "src/utils/extract_brain_source.jl", + "sha256": "ea5f729924514b49111795b2cd2babba26c7eeb4f4040c69af5ba56806ebca5d", + "language": "Julia", + "lines": 210, + "truncated": false, + "block": 2, + "row": 971 + }, + { + "path": "src/utils/io.jl", + "sha256": "d6ef00a66bdb271a5967687d629ec9496792536658ef0ad3559ea9742475a0c0", + "language": "Julia", + "lines": 1265, + "truncated": false, + "block": 2, + "row": 998 + }, + { + "path": "src/utils/spectral_transforms.jl", + "sha256": "03bce22c8d2c74ed14d2768004e2a69e260fd2329d5ae0c4745f39d0df64237b", + "language": "Julia", + "lines": 1112, + "truncated": false, + "block": 2, + "row": 996 + }, + { + "path": "src/utils/utils.jl", + "sha256": "d26659bd0aeda46fe8beb46035bc75600735a0c58282fc3b95e2f256ad0e8010", + "language": "Julia", + "lines": 266, + "truncated": false, + "block": 2, + "row": 973 + }, + { + "path": "src/utils/visualization.jl", + "sha256": "f5f6f2bade86440536fb92513b281bbd32db1a80fbb363ccff69284b77ee4516", + "language": "Julia", + "lines": 439, + "truncated": false, + "block": 2, + "row": 984 + }, + { + "path": "test/bound_adaptation_tests.jl", + "sha256": "c34a1093cbeab9d7a9036fec6fea6f7aa81ba1c54a0fe9914296f421b39085bb", + "language": "Julia", + "lines": 81, + "truncated": false, + "block": 2, + "row": 953 + }, + { + "path": "test/canonical_stability_tests.jl", + "sha256": "df5c6dcbfc192c4668e9d8780da2eb392385314800782bbf0dfe5a8c86553603", + "language": "Julia", + "lines": 81, + "truncated": false, + "block": 2, + "row": 944 + }, + { + "path": "test/cmaes_callback_alignment_tests.jl", + "sha256": "e6312f71a9912b3d455586f7efdc8a61dc2afbeb539bdeb89aa8e475c6d2026e", + "language": "Julia", + "lines": 25, + "truncated": false, + "block": 2, + "row": 924 + }, + { + "path": "test/delay_tests.jl", + "sha256": "8e1f3b7a50f909339c21f8c66c6f9e5ec544131f2fb8a7e531f212facd3edfcc", + "language": "Julia", + "lines": 121, + "truncated": false, + "block": 2, + "row": 960 + }, + { + "path": "test/grammar_brain_source_tests.jl", + "sha256": "6c5e25122c87b4d6d2d4e0b122f7bd486608bd657e6ee37e09b128ab2ad4185b", + "language": "Julia", + "lines": 152, + "truncated": false, + "block": 2, + "row": 962 + }, + { + "path": "test/internode_coupling_fallback_tests.jl", + "sha256": "0c9f6432bea38331d59b1bdc8f0c8638f0110ff29a4ed26fac8542af9a37752a", + "language": "Julia", + "lines": 145, + "truncated": false, + "block": 2, + "row": 964 + }, + { + "path": "test/measurement_noise_bands_tests.jl", + "sha256": "a0693fb50f0afb4dfbf4d48a7691ef54340a56aa5855ba1ff6cd7b6e974ec99a", + "language": "Julia", + "lines": 20, + "truncated": false, + "block": 2, + "row": 923 + }, + { + "path": "test/mpr_tests.jl", + "sha256": "f1cc2fd008a514e8cd9a4eac01258462785ff793aa9ff8b9c8f541094c30a1b9", + "language": "Julia", + "lines": 30, + "truncated": false, + "block": 2, + "row": 926 + }, + { + "path": "test/phase_dynamics_tests.jl", + "sha256": "a19b8fddb8b770afa638bfc4a82b6d4ab9bdc2656311fb1eac6820301b2b3450", + "language": "Julia", + "lines": 217, + "truncated": false, + "block": 2, + "row": 976 + }, + { + "path": "test/problem_isolation_tests.jl", + "sha256": "52c108ad46748bbf35ac62d4ff7dde820daa32ee5525e641b0d281fcf0ac0b7c", + "language": "Julia", + "lines": 37, + "truncated": false, + "block": 2, + "row": 931 + }, + { + "path": "test/psd_preprocessing_tests.jl", + "sha256": "64cae1ee25fa9a7754c420721d3a227fa4ef7eddb8254e233a418364c9f661fe", + "language": "Julia", + "lines": 229, + "truncated": false, + "block": 2, + "row": 970 + }, + { + "path": "test/runtests.jl", + "sha256": "4ee8567dd1dfb00d0b6f1ef0257ca350da19bd1a2c6b3f13fd44ecec9555b05e", + "language": "Julia", + "lines": 222, + "truncated": false, + "block": 2, + "row": 969 + }, + { + "path": "test/settings_serialization_tests.jl", + "sha256": "1befcfce7060e962126cf0b0be206acf7f0d7a1222ed561ff11b93aa2f281a80", + "language": "Julia", + "lines": 26, + "truncated": false, + "block": 2, + "row": 929 + }, + { + "path": "test/spectral_roi_settings_tests.jl", + "sha256": "0da175b24b5dea2394a97d9187e3de49c15aaf89de952faa5f0ee05ecbde1b92", + "language": "Julia", + "lines": 160, + "truncated": false, + "block": 2, + "row": 967 + }, + { + "path": "test/test_examples_subprocess.jl", + "sha256": "730d3550e1c76dbe06cbf789dea5518696c3212f12c29672f3dfa1e4c217d4bd", + "language": "Julia", + "lines": 87, + "truncated": false, + "block": 2, + "row": 939 + }, + { + "path": "test/transient_handling_tests.jl", + "sha256": "289240c3542cc69a72204b6eb1edf76ce0302c9add2f70b679623e7187ca7211", + "language": "Julia", + "lines": 46, + "truncated": false, + "block": 2, + "row": 933 + }, + { + "path": "test_loss_functions.jl", + "sha256": "6f908c05fdc09b115f5af4f7f94e24ede622e20de10131a2d7a6aefa14ca2755", + "language": "Julia", + "lines": 167, + "truncated": false, + "block": 2, + "row": 963 + } + ] +} \ No newline at end of file diff --git a/manifests/67/github.com__mveleanu__veleanu_et_al.json b/manifests/67/github.com__mveleanu__veleanu_et_al.json new file mode 100644 index 0000000000000000000000000000000000000000..ef9faa0aff46eac67ebbe53c0a744b9e570f1145 --- /dev/null +++ b/manifests/67/github.com__mveleanu__veleanu_et_al.json @@ -0,0 +1,111 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/mveleanu/veleanu_et_al", + "url": "https://github.com/mveleanu/veleanu_et_al", + "host": "github.com", + "commit": "8ce9fb28c1b42d135b796a2780b46aee923ac44b", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "FiberPhotometryAnalysisTool/functions/analysis_data_loader.py", + "sha256": "a966f0ba6092a276cb5466ff7198dba08411c9d1647cbc16cf9c29cf522803a5", + "language": "Python", + "lines": 139, + "truncated": false, + "block": 1, + "row": 7992 + }, + { + "path": "FiberPhotometryAnalysisTool/main.py", + "sha256": "658949f2e54f29ace29a3e546dc432c30d908281b14c5c75897db5b0d9919cc0", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 1, + "row": 5552 + }, + { + "path": "FiberPhotometryAnalysisTool/screens/analysis_screen.py", + "sha256": "eb1f19dea4934618b1f84d3a96938034e3bb05f0c7727440a005bbc07f2b053c", + "language": "Python", + "lines": 708, + "truncated": false, + "block": 1, + "row": 9589 + }, + { + "path": "FiberPhotometryAnalysisTool/screens/event_editing_screen.py", + "sha256": "ebe0af29e8a77da247e05842de39d1e6e144846dbd486ed34500d7c71fd0e363", + "language": "Python", + "lines": 328, + "truncated": false, + "block": 1, + "row": 8769 + }, + { + "path": "FiberPhotometryAnalysisTool/screens/plotting_screen.py", + "sha256": "8af65718dc553069883c0b9bfec3f5aecf690745c102df37427b12e59607d791", + "language": "Python", + "lines": 623, + "truncated": false, + "block": 1, + "row": 9609 + }, + { + "path": "LFP_analysis.py", + "sha256": "892d2cea11e2d7a23d0a87133a09d3894ce96f104537dbf36a07e9100461f7b0", + "language": "Python", + "lines": 1792, + "truncated": false, + "block": 1, + "row": 9826 + }, + { + "path": "LICENSE", + "sha256": "63be69e24c2ab439ac41cb96aaf404d7eef493513f9266464637d50eb50f3006", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2133 + }, + { + "path": "README.md", + "sha256": "f27d21fe526228a9c2e59162ce3ff678e6306e9402ccf9d7aba45e9bf7887783", + "language": "Text", + "lines": 83, + "truncated": false, + "block": 1, + "row": 11857 + }, + { + "path": "TST_Fiber_Ethovision_correlation.py", + "sha256": "88312d23b846f21047f735af3774c740b91603d36089484825ff170e7b79d56b", + "language": "Python", + "lines": 738, + "truncated": false, + "block": 1, + "row": 9608 + }, + { + "path": "lvm_import2.m", + "sha256": "32ae088b3a54b5fa57406ab2ab482b7f460f7570a3b1c1eae622b8252206fd0a", + "language": "MATLAB", + "lines": 495, + "truncated": false, + "block": 1, + "row": 4223 + }, + { + "path": "matlab_demodulation_script.m", + "sha256": "16b3dbadd6f3869fb1389b5e030866203e5a611bbdb7999a3c0fa166f1fec6c1", + "language": "MATLAB", + "lines": 179, + "truncated": false, + "block": 1, + "row": 3772 + } + ] +} \ No newline at end of file diff --git a/manifests/67/github.com__zaineb18__tristan_pipeline.json b/manifests/67/github.com__zaineb18__tristan_pipeline.json new file mode 100644 index 0000000000000000000000000000000000000000..78aadf61839a3eda37ffee021f96f9a2c70c14a6 --- /dev/null +++ b/manifests/67/github.com__zaineb18__tristan_pipeline.json @@ -0,0 +1,345 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/zaineb18/tristan_pipeline", + "url": "https://github.com/Zaineb18/tristan_pipeline", + "host": "github.com", + "commit": "7d4e9484292521ec58b612649620ff3cd205e95b", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "ddf7b6020ed2b1f208973382535393fa7e6ffbcafd3e72c0ea326234af8f025f", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2093 + }, + { + "path": "README.md", + "sha256": "cc7a193bbdd1a5c8b49572580a9d5cb62f9fe5d5edfa8d1483d6130fb4df83fd", + "language": "Text", + "lines": 68, + "truncated": false, + "block": 1, + "row": 11851 + }, + { + "path": "io/bin/convert_to_bids.sh", + "sha256": "55cda9ccaebbd943f915c979bf9ab2f106de044c207d6995b57ddd92f251e926", + "language": "Shell", + "lines": 160, + "truncated": false, + "block": 1, + "row": 11733 + }, + { + "path": "io/params.py", + "sha256": "4434a32c942d1e3f2754a2c7cd6f88287681aab204ba3b120ec5dec888ba751a", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 1, + "row": 6199 + }, + { + "path": "scripts/analysis/first_level_glm.py", + "sha256": "220ecf52335d7286168ea2a8ce0fb80ee536c5af7a4a2fe03f32ac8e3c41243c", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 1, + "row": 7696 + }, + { + "path": "scripts/analysis/first_level_glm_caro.py", + "sha256": "8fc226b1707bb011e4ebc5431fa573eb9a6ab74caf499a0be2da13fb7c56d4c1", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 1, + "row": 7457 + }, + { + "path": "scripts/analysis/project_atlas.py", + "sha256": "56fd457d25479c7ef275fd0812b87462effad19893b5fd72ddec056d5c3ddd5a", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 1, + "row": 6817 + }, + { + "path": "scripts/analysis/second_level_glm.py", + "sha256": "9ad627170c5982e8644b5797f6da6612b8f838acde1c9a73a332124327d76794", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 1, + "row": 6204 + }, + { + "path": "scripts/analysis/sensibility_specificity.py", + "sha256": "b341eff116027dc57b204561fe359e1dd465a95dcbf6136279ad6f0fbafa7760", + "language": "Python", + "lines": 182, + "truncated": false, + "block": 1, + "row": 8153 + }, + { + "path": "scripts/analysis/tcnr.py", + "sha256": "88a81408298f5ec310762623febc7bc29014ae61d6b42ece74d9b2f6d24f8342", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 1, + "row": 7585 + }, + { + "path": "scripts/analysis/tsnr_after_task_regression.py", + "sha256": "e1a4357fd1af8476ebbe8ff7a10157e8a50fa1527c8ead6e027e2526891a9e3b", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 1, + "row": 7045 + }, + { + "path": "scripts/analysis/tsnr_grp_level.py", + "sha256": "903dca5cfc4aadf9331c6f4e9c86aac9e0d172d6dc03e16c6471dff2d4bd372b", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 1, + "row": 5863 + }, + { + "path": "scripts/plotting/atlas_v2.py", + "sha256": "e8b0386eb0bd84e2ad334c160260231bd16ee932a262214cfb734ff8a0b6b792", + "language": "Python", + "lines": 156, + "truncated": false, + "block": 1, + "row": 7739 + }, + { + "path": "scripts/plotting/bold_change_plotting.py", + "sha256": "fc4a249180654b2e6bd7d648a999f9d617c8c6a3a7346a95014c09f82c0545bb", + "language": "Python", + "lines": 217, + "truncated": false, + "block": 1, + "row": 8556 + }, + { + "path": "scripts/plotting/disp_atlas.py", + "sha256": "88314d1e183de9c071373bce0b199c2fddd8559dee3e2f81f385191bccfa2335", + "language": "Python", + "lines": 188, + "truncated": false, + "block": 1, + "row": 8524 + }, + { + "path": "scripts/plotting/motion_estimates_plotting.py", + "sha256": "5707ea81a41f6fee936da84ec620b47afc3622842deab1176ec67ab15c4f4d32", + "language": "Python", + "lines": 115, + "truncated": false, + "block": 1, + "row": 7322 + }, + { + "path": "scripts/plotting/sanity_check_atlas.py", + "sha256": "e00e940cee8eb8bf7f9fc175b9fad4c285889b6a363b67e33cea9bc4b802c469", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 1, + "row": 7283 + }, + { + "path": "scripts/plotting/surface_projected_zmaps.py", + "sha256": "7dd198cb641bbc0352b652f267fa4e8f1ab9e9f5ccd74f921e558894dc892313", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 1, + "row": 7381 + }, + { + "path": "scripts/plotting/tcnr_clac_plotting.py", + "sha256": "9d480eaae104a9d862b646ee78d01277cff869e2716c2f95e688eb7c05211495", + "language": "Python", + "lines": 154, + "truncated": false, + "block": 1, + "row": 7703 + }, + { + "path": "scripts/plotting/tnsr_violinplot_tissues_plotting.py", + "sha256": "4a51fbbf9f453071b4dc061cce70c16ccea832910af5ce6cb4830e3c05f277c6", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 1, + "row": 7200 + }, + { + "path": "scripts/plotting/tsnr_boxplot_plotting.py", + "sha256": "6c1169bff4ff27c61953f83c068b547745ffad3d6496fedbb856cb95af9e3bae", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 1, + "row": 7641 + }, + { + "path": "scripts/plotting/tsnr_grp_anim.py", + "sha256": "c634dcdc6a8096c570d25bec9f154ffd18dd5d3489cdc11d900a4eb8aa626a35", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 1, + "row": 5927 + }, + { + "path": "scripts/plotting/tsnr_grp_plotting.py", + "sha256": "a321392cc0ad8e3e0bb51ab7e84ea3a611cc688062f9d268a8ac14e96bf5afd2", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 1, + "row": 5663 + }, + { + "path": "scripts/plotting/tsnr_hist_anim.py", + "sha256": "d5bcb38eb429b101c1fbef7df22e1b72674e1d57f46b98179b5f74194df12fd9", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 1, + "row": 7429 + }, + { + "path": "scripts/plotting/tsnr_hist_plotting.py", + "sha256": "2d4880cf711a04464b7bb6798fbd435480484704ea6137a7723683fdcb6afeeb", + "language": "Python", + "lines": 189, + "truncated": false, + "block": 1, + "row": 7740 + }, + { + "path": "scripts/plotting/zscore_boxplot_plotting.py", + "sha256": "ea096e56567c4ab9be8594bf4b75af79c1facf52f58785adb791e0d02c3cfca4", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 1, + "row": 8064 + }, + { + "path": "scripts/preproc/__init__.py", + "sha256": "b2ded1821c7473498339c148566d0d0cb25c00a48d57f834324deaa68242191e", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 1, + "row": 5110 + }, + { + "path": "scripts/preproc/ap_pa.py", + "sha256": "8383b880c72eef4fb63bdbd19922a5579e4a42fc00967deec90b43225f38b28e", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 1, + "row": 7513 + }, + { + "path": "scripts/preproc/ap_pa_caro.py", + "sha256": "b9619e46391dc2458f1f8cf252060514474d5ba563f2b4297b54201f58cf19a9", + "language": "Python", + "lines": 139, + "truncated": false, + "block": 1, + "row": 7733 + }, + { + "path": "scripts/preproc/bin/fmriprep_bash.sh", + "sha256": "51160f7273b23d4df317119e8edeeab3a0383d999a0296425d62797baae746eb", + "language": "Shell", + "lines": 70, + "truncated": false, + "block": 1, + "row": 11684 + }, + { + "path": "scripts/preproc/bin/fmriprep_bash__.sh", + "sha256": "d9ac456b129bba571fbe7c005b068e1d6f15f88497ac927c91afe6264e4234aa", + "language": "Shell", + "lines": 19, + "truncated": false, + "block": 1, + "row": 11485 + }, + { + "path": "scripts/preproc/remove_first_vols.py", + "sha256": "b3b7e13fdab87f2228ef4faf1f414557de52080f947480d7823e3a000fa64ad7", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 1, + "row": 5429 + }, + { + "path": "utils/analysis_utils.py", + "sha256": "825d814339645f7ddf5c3375ed1d29f9d5861a0cd0af6ab71ea03bb6817a31fa", + "language": "Python", + "lines": 221, + "truncated": false, + "block": 1, + "row": 8187 + }, + { + "path": "utils/glm_utils.py", + "sha256": "84112d8cac6c5d1ffdf594bada8727a338ddfcc91ca2d499539247e36ac44f05", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 1, + "row": 7399 + }, + { + "path": "utils/loading_utils.py", + "sha256": "9fac0ab37e696e80b77a4e3befaf6a695f3a8884dec73c996874f6c7d17877b9", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 1, + "row": 8077 + }, + { + "path": "utils/plotting_utils.py", + "sha256": "0d69d567250277d334ae9bafb743f3acd0eccdc6d4e42486e9ec6ef2b198d704", + "language": "Python", + "lines": 276, + "truncated": false, + "block": 1, + "row": 8720 + }, + { + "path": "utils/preproc_utils.py", + "sha256": "d3a89fe3229d39a6075a194987b1d5efd9d87d9e0996e0c31a61828724cef632", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 1, + "row": 6145 + } + ] +} \ No newline at end of file diff --git a/manifests/68/github.com__chassall__songfamiliarity.json b/manifests/68/github.com__chassall__songfamiliarity.json new file mode 100644 index 0000000000000000000000000000000000000000..12d3a04d97a724bda27483a2b4c8c6410dafa6e5 --- /dev/null +++ b/manifests/68/github.com__chassall__songfamiliarity.json @@ -0,0 +1,147 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/chassall/songfamiliarity", + "url": "https://github.com/chassall/songfamiliarity", + "host": "github.com", + "commit": "e98e9c8e400430944ef925c00eed1468118f00ce", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "e3dc6ac5f3cb37fedb36a34b39043185148a8653a91046f7af40666c07aec119", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2143 + }, + { + "path": "README.md", + "sha256": "6af895ec996465e1ef945b66f0301208c15b3ebf30fed4e841851313aa581cb2", + "language": "Text", + "lines": 2, + "truncated": false, + "block": 1, + "row": 11766 + }, + { + "path": "analyze_songfamiliarity_01_bidsify.m", + "sha256": "87a11f362d7e14828638527459ce77b899028fb683d2c64f56665e1c2895c94d", + "language": "MATLAB", + "lines": 255, + "truncated": false, + "block": 1, + "row": 4085 + }, + { + "path": "analyze_songfamiliarity_01_eegprep.m", + "sha256": "aa91cdd06e53307eebdb656a43c6f0a7c1234f83711ed5e068a9df3a48a74526", + "language": "MATLAB", + "lines": 92, + "truncated": false, + "block": 1, + "row": 3332 + }, + { + "path": "analyze_songfamiliarity_02_beh.m", + "sha256": "b27cc6b5ad52a150d0336dd233c02fe6ca78c3d18c7ee1a90cd7caf8dff82078", + "language": "MATLAB", + "lines": 129, + "truncated": false, + "block": 1, + "row": 3635 + }, + { + "path": "analyze_songfamiliarity_04_labelnotes.m", + "sha256": "fa5f6de663472e3871c7e4f5f83ce638110574771b025ba2b1744abebe97b754", + "language": "MATLAB", + "lines": 163, + "truncated": false, + "block": 1, + "row": 3765 + }, + { + "path": "analyze_songfamiliarity_05_erps.m", + "sha256": "5cf5ee15cd794e5cd214101124f13d6a6e6eae689f7dab3b6dc4e16e657b6ea3", + "language": "MATLAB", + "lines": 211, + "truncated": false, + "block": 1, + "row": 3889 + }, + { + "path": "analyze_songfamiliarity_06_statsandfigures.m", + "sha256": "2331be04947f81e59162e73c8bb5c1cce1ed8edbd5d1ad756403d41f538ee97e", + "language": "MATLAB", + "lines": 569, + "truncated": false, + "block": 1, + "row": 4251 + }, + { + "path": "private/dm_prep.m", + "sha256": "9f37f684b04854f355b227a4c54cc176170c25cc094eefd7cbb8fd795a2d18c5", + "language": "MATLAB", + "lines": 132, + "truncated": false, + "block": 1, + "row": 3589 + }, + { + "path": "private/doPermTest2.m", + "sha256": "c432e947c7aacfc9d7995240c7aea8cf2beb179ff2dab9fb620ece1418b0f78f", + "language": "MATLAB", + "lines": 260, + "truncated": false, + "block": 1, + "row": 3985 + }, + { + "path": "private/figset.m", + "sha256": "5830cdba2586c709c4fa8bbd1d448efd8aac0e171c9733c23f28f82aae4c754c", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 1, + "row": 2897 + }, + { + "path": "private/formatNBP.m", + "sha256": "8178e1ab6ae5cd0d426069d47abd8f694338cf9a3a4fb6b78a2277a30721509f", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 1, + "row": 2768 + }, + { + "path": "private/makefigure.m", + "sha256": "332780e44a4fa894912a1f63dcc49226f154872be1b00ab7a3c3377f03255731", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 1, + "row": 2693 + }, + { + "path": "private/pinv_reg.m", + "sha256": "ec668950cb010717e121ecd00e5e8d61a859fd2b0ee80b308e8f4eb00f3c048f", + "language": "MATLAB", + "lines": 84, + "truncated": false, + "block": 1, + "row": 3254 + }, + { + "path": "private/subtightplot.m", + "sha256": "967dce00cfd00c7cb9e2a9c88a66ca65443ff760e8f0728e54e685a9fe84f6f2", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 1, + "row": 3355 + } + ] +} \ No newline at end of file diff --git a/manifests/68/github.com__ptolmachev__simplifiedmodel_rcpg_swcpg_interaction.json b/manifests/68/github.com__ptolmachev__simplifiedmodel_rcpg_swcpg_interaction.json new file mode 100644 index 0000000000000000000000000000000000000000..9e545c390d671a2bbbedc962c7e7b75cf43ae62b --- /dev/null +++ b/manifests/68/github.com__ptolmachev__simplifiedmodel_rcpg_swcpg_interaction.json @@ -0,0 +1,354 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ptolmachev/simplifiedmodel_rcpg_swcpg_interaction", + "url": "https://github.com/ptolmachev/SimplifiedModel_rCPG_swCPG_interaction", + "host": "github.com", + "commit": "a6c77427e6f0466ce91650a5e99c8c287e6d9674", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "ff350e3e6e24c6bf737e40dd20a25ac090b424f6373001e215528976c21b8633", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2107 + }, + { + "path": "README.md", + "sha256": "9530ccbcf3ecbb2cd2c06eb8f32c2137c86800680f68fdb8eefc94e33f77a012", + "language": "Text", + "lines": 38, + "truncated": false, + "block": 1, + "row": 11802 + }, + { + "path": "code/rCPGswCPG/Experiment.py", + "sha256": "0d076bae71975828796dd5be77d3896066265af9c637cda376fa180f9b7a22dd", + "language": "Python", + "lines": 238, + "truncated": false, + "block": 1, + "row": 8831 + }, + { + "path": "code/rCPGswCPG/Network.py", + "sha256": "a514902954dff414a214e4f1931606a949a595de16ca117df371358bd6bf73c4", + "language": "Python", + "lines": 254, + "truncated": false, + "block": 1, + "row": 8324 + }, + { + "path": "code/rCPGswCPG/construct_protocol.py", + "sha256": "4c38bd93d55a8774127d8e961f3410e1e183ed9debeba297e80613a7cfca384e", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 1, + "row": 5420 + }, + { + "path": "code/rCPGswCPG/experiments/KF_lesioning_different_amps.py", + "sha256": "f311f1b0f2d200618ba52f8b27847f7125087d54fafe8bcc53e9d4929e1e5a21", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 1, + "row": 6326 + }, + { + "path": "code/rCPGswCPG/experiments/lesioning_KF.py", + "sha256": "1e08ed1ec7a413e18c21893c1d864136444845d8798f1554dbc986c0cc2e95ec", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 1, + "row": 6630 + }, + { + "path": "code/rCPGswCPG/experiments/prc_running_simulations.py", + "sha256": "358af186fdbf82c989a72d4d186c2a56a0099446760c59228b6f87888acc39f7", + "language": "Python", + "lines": 155, + "truncated": false, + "block": 1, + "row": 8105 + }, + { + "path": "code/rCPGswCPG/experiments/tau_v_sweep.py", + "sha256": "c47df7ec62fc2685f08379df3338f4e411999602b13f72c3142c822d833be641", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 1, + "row": 6663 + }, + { + "path": "code/rCPGswCPG/experiments/variation_single_param.py", + "sha256": "d985ade0d6dceb784783f9a912ee26038b722196ed327d2734a34de54fc67585", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 1, + "row": 7484 + }, + { + "path": "code/rCPGswCPG/experiments/varying_arousal_drive.py", + "sha256": "fe742aea0c4fe7f6f8ee6c1447d213a8fc725e39bace02d3cad40e09cccaa78e", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 6389 + }, + { + "path": "code/rCPGswCPG/model_params/config_loader.py", + "sha256": "16f089ae33a624012cbfd7dec0125965ad31db14995b8da702fb67d92d619441", + "language": "Python", + "lines": 154, + "truncated": false, + "block": 1, + "row": 7605 + }, + { + "path": "code/rCPGswCPG/parameter_extraction/param_extraction_utils.py", + "sha256": "3eeb04fe0ce51cba80bfd173979781f7aa21a4eb06f1bb420bf0516b55a405f5", + "language": "Python", + "lines": 205, + "truncated": false, + "block": 1, + "row": 7955 + }, + { + "path": "code/rCPGswCPG/plotting_figures/Fig4_exp_vs_sim_swallowing_and_breathing.py", + "sha256": "1bde5a1ea0406e7b952909d4882a32161614c0a734fcaa2895f01ba48b20efe5", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 1, + "row": 7485 + }, + { + "path": "code/rCPGswCPG/plotting_figures/Fig5_PRC_comparison.py", + "sha256": "b9af9a03d6f403e940557a895428c931d2683a4c8c3410fbc2485b2f4eac0a26", + "language": "Python", + "lines": 146, + "truncated": false, + "block": 1, + "row": 7781 + }, + { + "path": "code/rCPGswCPG/plotting_figures/Fig6_Solitary_swallow_PIR/PIR_mechanism_solitary_swallow.py", + "sha256": "9a840a7b449a8939299c63761f3e6cf39a8f6921ddaf236ce8efd7468beb0084", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 5987 + }, + { + "path": "code/rCPGswCPG/plotting_figures/Fig6_Solitary_swallow_PIR/PIR_solitary_swallow_phase_space_analysis.py", + "sha256": "620266ec8186dfb8b5faa9fb63ece8e76aa90978f69a4d7acd6d2151b4177c27", + "language": "Python", + "lines": 210, + "truncated": false, + "block": 1, + "row": 8369 + }, + { + "path": "code/rCPGswCPG/plotting_figures/Fig6_Solitary_swallow_PIR/isolating_drives_to_SwHCO.py", + "sha256": "c2964ce71cc9ae03a858e0e081d0db9eb27580a8cc01c9c1c4fe817b42a35f7d", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 1, + "row": 6611 + }, + { + "path": "code/rCPGswCPG/plotting_figures/Fig7_apn_vs_eupn.py", + "sha256": "c8bb9c9f8795dfb3f2969d7da8ce2130db2059155559508fb7fffd5a830f3efc", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 1, + "row": 7047 + }, + { + "path": "code/rCPGswCPG/plotting_figures/Fig8_pathological_behavior.py", + "sha256": "b6f1df42486e71db9418dbc0f6b3462ec2b379feb8346c1807748f72b31908cd", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 1, + "row": 6673 + }, + { + "path": "code/rCPGswCPG/plotting_figures/Fig9_VNA_responses.py", + "sha256": "9127e7c7aa473328ba15862b6dbf4d5f0e1aa2a9bad63b3517636a4bc6615ddc", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 1, + "row": 6908 + }, + { + "path": "code/rCPGswCPG/plotting_figures/Fig9_effect_of_varying_the_variables.py", + "sha256": "849ff643eed26c0b125b3d0de093b9758a352e15b9d90e0e9fd8c137626d1ec9", + "language": "Python", + "lines": 193, + "truncated": false, + "block": 1, + "row": 8335 + }, + { + "path": "code/rCPGswCPG/plotting_figures/plotting_PNA_VNA_Intact_different_amps.py", + "sha256": "8fa506548adc49dd93c471d0da1a9cf5a2e64b54aed69267e6f54b59c4e59b3f", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 1, + "row": 6414 + }, + { + "path": "code/rCPGswCPG/plotting_figures/plotting_PNA_VNA_KF_inh_different_amps.py", + "sha256": "2a87fd626f373cda0701eac081b8e99aae8e4368e337ebdfff9c791bedde677a", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 1, + "row": 6409 + }, + { + "path": "code/rCPGswCPG/plotting_figures/plotting_effect_of_varying_arousal_drive.py", + "sha256": "fd539adf7bd64dfb10894a7b9dcf58f7dc55d08537941e1d51958443f58fc8fb", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 1, + "row": 6705 + }, + { + "path": "code/rCPGswCPG/plotting_figures/plotting_utils.py", + "sha256": "30d499189f2a0d0134c69a38ff2236471698235b74a8c60894fd2c03aed3ce55", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 1, + "row": 7278 + }, + { + "path": "code/rCPGswCPG/prc_extraction/prc_extraction_subroutines/filtering_utils.py", + "sha256": "b9279430c1d3f71156388c7ed7f54efc32fda1609050396a5c5ff09fb252bc83", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 1, + "row": 6319 + }, + { + "path": "code/rCPGswCPG/prc_extraction/prc_extraction_subroutines/phase_extraction.py", + "sha256": "3c7401211d252b1e1cd0aaad4ec7627e867a609c2917eccd041f22930c1eb4f0", + "language": "Python", + "lines": 112, + "truncated": false, + "block": 1, + "row": 7103 + }, + { + "path": "code/rCPGswCPG/prc_extraction/prc_extraction_subroutines/prc_extraction_linear_fit.py", + "sha256": "d053411f1a9f53fede65aab67d24e026a9b760e4a098eb213a1c8177455e1cb9", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 1, + "row": 6783 + }, + { + "path": "code/rCPGswCPG/prc_extraction/run_prc_extraction.py", + "sha256": "1aafeacef21cf4b708ec9c9d02186422b30f55521399498f29325ca969439f45", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 1, + "row": 7281 + }, + { + "path": "code/rCPGswCPG/protocols/__init__.py", + "sha256": "775150f2168d8df4f0e5b3e248c1001f0cc927307994c923ee5e705e27f5a55b", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 5108 + }, + { + "path": "code/rCPGswCPG/protocols/protocols.py", + "sha256": "447209fb88732af26c563188dce52c3cbef246187f5e5b8981124186aeb015a6", + "language": "Python", + "lines": 136, + "truncated": false, + "block": 1, + "row": 7633 + }, + { + "path": "code/rCPGswCPG/run_model.py", + "sha256": "04f8299b00363a4c1d3e22c35252d28c17179803559aed5df3a5c76f83ccbd01", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 1, + "row": 6749 + }, + { + "path": "code/rCPGswCPG/utils/__init__.py", + "sha256": "c30cc8d0758ccf4154a7857ae971917f379a2b781a4149c88c3b2d1bc654a452", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 5004 + }, + { + "path": "code/rCPGswCPG/utils/gen_utils.py", + "sha256": "6f77e0e6e399e6f6c1c87fa3c53e836667401bccead885aa7bdff990a2933a5b", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 1, + "row": 5790 + }, + { + "path": "code/rCPGswCPG/utils/sp_utils.py", + "sha256": "efc3b3b80f562e2a3bfef5be024dec36834e10b68ef1d83b9e86bc1db828b10f", + "language": "Python", + "lines": 146, + "truncated": false, + "block": 1, + "row": 7533 + }, + { + "path": "code/rCPGswCPG/utils/utils.py", + "sha256": "622c0a3cd04ffa64fc4f8cf85d0e3e89f19ba39b60d0796f864ec4d042dd5d34", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 1, + "row": 6910 + }, + { + "path": "code/setup.py", + "sha256": "2a2cd6a73cd6d7b9baa5939c7a1faed32bbd34e3282df53dd1dee9f07b9b2e8e", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 1, + "row": 5540 + } + ] +} \ No newline at end of file diff --git a/manifests/6b/github.com__leonardoricci__iaaft.json b/manifests/6b/github.com__leonardoricci__iaaft.json new file mode 100644 index 0000000000000000000000000000000000000000..38b38229af05df858a10b3d2b33134c7eca297b0 --- /dev/null +++ b/manifests/6b/github.com__leonardoricci__iaaft.json @@ -0,0 +1,48 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/leonardoricci/iaaft", + "url": "https://github.com/LeonardoRicci/iaaft", + "host": "github.com", + "commit": "4ac80e8f069c5981ca182896f99382890e326859", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE.txt", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.txt", + "sha256": "e57f1c320b8cf8798a7d2ff83a6f9e06a33a03585f6e065fea97f1d86db84052", + "language": "License", + "lines": 675, + "truncated": false, + "block": 1, + "row": 2236 + }, + { + "path": "README.md", + "sha256": "df5aba6381559abc55308a46419cbb03b7e01a342aef97dbc5abf3be60ef884a", + "language": "Text", + "lines": 25, + "truncated": false, + "block": 1, + "row": 11817 + }, + { + "path": "generate_surrogate_iaaft.m", + "sha256": "6e7f16aa73323d3a3c9dbb1441ab489bcf5e12cfd35164aacb72c625e44d8a5f", + "language": "MATLAB", + "lines": 126, + "truncated": false, + "block": 1, + "row": 3508 + }, + { + "path": "generate_surrogate_iaaft.py", + "sha256": "59110a5582ea21ee3fc255c57457136512d1d34d5ede009002ba4527ccc74ffd", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 1, + "row": 7355 + } + ] +} \ No newline at end of file diff --git a/manifests/6d/github.com__georgwimmer__eb-segmentation-mask2former.json b/manifests/6d/github.com__georgwimmer__eb-segmentation-mask2former.json new file mode 100644 index 0000000000000000000000000000000000000000..283a1c50e81fffaef31d42e077f806d5c5408842 --- /dev/null +++ b/manifests/6d/github.com__georgwimmer__eb-segmentation-mask2former.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/georgwimmer/eb-segmentation-mask2former", + "url": "https://github.com/GeorgWimmer/EB-Segmentation-Mask2Former/", + "host": "github.com", + "commit": "6794b46ddfc8dee486bf9aeb8f7b7a5f895bdf07", + "license": "CC0-1.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "EB_compare_annotations_class_wise.py", + "sha256": "7e54b329e2a11108d5603bffff904d2f24c1d7da68abb697ea5b269e1e25ef3e", + "language": "Python", + "lines": 630, + "truncated": false, + "block": 1, + "row": 9496 + }, + { + "path": "EB_mask2former.py", + "sha256": "d9af5a8aa9acc998e989b7be2b4bd3e718f3c555e68ba26a743a9be31e3f056a", + "language": "Python", + "lines": 391, + "truncated": false, + "block": 1, + "row": 9113 + }, + { + "path": "EB_transformers_util.py", + "sha256": "07e9a5182fd99a4019552b521f6de39d8abd9acd84d0e64eb7dbbd4be6d6c03b", + "language": "Python", + "lines": 1176, + "truncated": false, + "block": 1, + "row": 9744 + }, + { + "path": "LICENSE", + "sha256": "a2010f343487d3f7618affe54f789f5487602331c0a8d03f49e9a7c547cf0499", + "language": "License", + "lines": 121, + "truncated": false, + "block": 1, + "row": 2210 + }, + { + "path": "README.md", + "sha256": "a0982c590937157412d00a884667544b7589bc6dff667cea7a511efc3bbd2eee", + "language": "Text", + "lines": 116, + "truncated": false, + "block": 1, + "row": 11915 + } + ] +} \ No newline at end of file diff --git a/manifests/6d/github.com__grattonlab__gratton2020_ni_hfmotion.json b/manifests/6d/github.com__grattonlab__gratton2020_ni_hfmotion.json new file mode 100644 index 0000000000000000000000000000000000000000..b47438e1e01795cb66187ba35621442d07efb33c --- /dev/null +++ b/manifests/6d/github.com__grattonlab__gratton2020_ni_hfmotion.json @@ -0,0 +1,120 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/grattonlab/gratton2020_ni_hfmotion", + "url": "http://www.github.com/GrattonLab/Gratton2020_NI_HFmotion/blob/master/mot_FFT.m", + "host": "github.com", + "commit": "4b326453a4aaadcbb6943633a714d88cf23be43d", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "1677bc7b1c26f85cf9e3c3c7fe6c404bf4d63611816f4c39e0f477633b837ea1", + "language": "Text", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11803 + }, + { + "path": "benchmarking_analysis.m", + "sha256": "8162ce03f3802ee3b1d82fbb919e6f787739dc239513622408cd1f5348a97ab4", + "language": "MATLAB", + "lines": 207, + "truncated": false, + "block": 1, + "row": 3810 + }, + { + "path": "filter_motion.m", + "sha256": "83b08ec6379c56b0db471b069e3f6034e396bbe2ce99801c9f2e7acd52372a01", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 1, + "row": 2865 + }, + { + "path": "grayplot_HFmotion.m", + "sha256": "49ab3046283597f7b4d32913c30ff74b9662cad4b0742ea03b12b3cf139f7ca1", + "language": "MATLAB", + "lines": 160, + "truncated": false, + "block": 1, + "row": 3604 + }, + { + "path": "hline_new.m", + "sha256": "d53f694a64132f619641a6d34afd20146fc8230b5753540df55f99501125a081", + "language": "MATLAB", + "lines": 140, + "truncated": false, + "block": 1, + "row": 3529 + }, + { + "path": "mot_FFT.m", + "sha256": "6345b58feffe68871ab5a66fbc8578004ecfa0547b3dd59c2e749ae39396ba2b", + "language": "MATLAB", + "lines": 90, + "truncated": false, + "block": 1, + "row": 3249 + }, + { + "path": "motion_HFcharacteristics.m", + "sha256": "b083e6d16457ca7f21b40d13fc29c7bc357369795f6fda5aa8b0e06967445184", + "language": "MATLAB", + "lines": 154, + "truncated": false, + "block": 1, + "row": 3655 + }, + { + "path": "plot_correlations_motion_by_characteristic.m", + "sha256": "541ce78cccfabe84508b22abfa09b3036e7e919bdc9d82caae924dd78d26257f", + "language": "MATLAB", + "lines": 77, + "truncated": false, + "block": 1, + "row": 3184 + }, + { + "path": "plot_grouphists_motion_by_characteristic.m", + "sha256": "af20e9979516c9a25b75239028573b29c64db0b854c17af980d578fc1777e492", + "language": "MATLAB", + "lines": 40, + "truncated": false, + "block": 1, + "row": 3110 + }, + { + "path": "save_fig.m", + "sha256": "4c9323da101d165dfd16826c256be17d4a24d0be376e09d19db169b08c249f12", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 1, + "row": 2343 + }, + { + "path": "vline_new.m", + "sha256": "30bbe41d34ddb024ebb00fb5d3493018705b0973f5cc1819de936ee69d1536f0", + "language": "MATLAB", + "lines": 140, + "truncated": false, + "block": 1, + "row": 3515 + } + ] +} \ No newline at end of file diff --git a/manifests/6d/github.com__macsbio__hd-ase-nbs.json b/manifests/6d/github.com__macsbio__hd-ase-nbs.json new file mode 100644 index 0000000000000000000000000000000000000000..87ca5de6c8480dce84d1db64bcc2297aa68deab1 --- /dev/null +++ b/manifests/6d/github.com__macsbio__hd-ase-nbs.json @@ -0,0 +1,363 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/macsbio/hd-ase-nbs", + "url": "https://github.com/macsbio/HD-ASE-NBS", + "host": "github.com", + "commit": "d61affb4d3ed6e5901edbd05b21b5c0118aff994", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "34c3cde5cf4f5aee20384af334759cca636e26dae2968bb68e4a96de7e78b701", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2179 + }, + { + "path": "README.md", + "sha256": "bbc1bdc6757027a519dda93ea3090dc44ed3e0f1db3e78633210fab8285ea1b0", + "language": "Text", + "lines": 33, + "truncated": false, + "block": 1, + "row": 11811 + }, + { + "path": "docker/install_packages.R", + "sha256": "0d56edae24a114db366b501e5b8806350ed68ef53d9fd41ae246968b96acb93f", + "language": "R", + "lines": 109, + "truncated": false, + "block": 1, + "row": 10309 + }, + { + "path": "scripts/downstream analysis/ASE-pre-processing/ASEReadCounter_OutputProcessing.R", + "sha256": "7cb91afc3415aa2a2e609cd897771ff3d70b2ec8870b2cc858afb7fb930aaadd", + "language": "R", + "lines": 167, + "truncated": false, + "block": 1, + "row": 10362 + }, + { + "path": "scripts/downstream analysis/ASE-pre-processing/ASE_HTT.R", + "sha256": "5880e97ae43a185af1525eb133eda3178922b3cc152cf758475f3aa77cfd1100", + "language": "R", + "lines": 1267, + "truncated": false, + "block": 1, + "row": 10602 + }, + { + "path": "scripts/downstream analysis/ASE-pre-processing/manhattanplot-function.R", + "sha256": "60f8cc7a839f62e997c2e94aec52b74f77a938fd8ac46bf9b30b159b76434feb", + "language": "R", + "lines": 100, + "truncated": false, + "block": 1, + "row": 10175 + }, + { + "path": "scripts/downstream analysis/cluster-analysis/DisGenet-network.R", + "sha256": "99c99e5b3eee196718a721a9e8947e8879aa47b166e4c51198d5ec169564a9e2", + "language": "R", + "lines": 160, + "truncated": false, + "block": 1, + "row": 10283 + }, + { + "path": "scripts/downstream analysis/cluster-analysis/clinical_data_association.R", + "sha256": "7bfa6fda956cfd74bccbd15f1fd2ed3214ccb4da7a4cc6fda92ab1511fa6fb15", + "language": "R", + "lines": 213, + "truncated": false, + "block": 1, + "row": 10324 + }, + { + "path": "scripts/downstream analysis/cluster-analysis/data-preprocessing.R", + "sha256": "4d5b4a0acb437aa6f36f6604fbe653b9bb620dde2e4fcec44821fed8a92e8f53", + "language": "R", + "lines": 79, + "truncated": false, + "block": 1, + "row": 10121 + }, + { + "path": "scripts/downstream analysis/cluster-analysis/deg-analysis.R", + "sha256": "c370f10f0264d4c754d6db384ba9cde16c7c63c033d1830c1930fa7d7a1bd32b", + "language": "R", + "lines": 267, + "truncated": false, + "block": 1, + "row": 10366 + }, + { + "path": "scripts/downstream analysis/cluster-analysis/quality-control.R", + "sha256": "bcc479f9fbf5ca3cdc8dfdb538f13023e65f98f0ad9b82047a4c4c533f0abd59", + "language": "R", + "lines": 412, + "truncated": false, + "block": 1, + "row": 10493 + }, + { + "path": "scripts/fastq-processing/ASEReadCounter.sh", + "sha256": "da4f3a444d1d31fd29ff361db6b47015ec02c1c753e3a829b8e1584158324a98", + "language": "Shell", + "lines": 54, + "truncated": false, + "block": 1, + "row": 11638 + }, + { + "path": "scripts/fastq-processing/First_STAR_align.sh", + "sha256": "612c0c784234b38b07425fb07e97bfa7740b905ccd03146bc68080fea9719110", + "language": "Shell", + "lines": 24, + "truncated": false, + "block": 1, + "row": 11254 + }, + { + "path": "scripts/fastq-processing/STAR_create_genome_index.sh", + "sha256": "e7a1bae2b04660b9a8fe3b463d1165bd3efaf4e24a16b207bb80b25b070fa4a7", + "language": "Shell", + "lines": 18, + "truncated": false, + "block": 1, + "row": 11174 + }, + { + "path": "scripts/fastq-processing/add_rg_and_index_wasp.sh", + "sha256": "cbfd063eadd803fdbcf1e9356b743b7bdc7b6a7a02f5a65687797a189ec3bd74", + "language": "Shell", + "lines": 41, + "truncated": false, + "block": 1, + "row": 11611 + }, + { + "path": "scripts/fastq-processing/fastqc_trimmed_reads.sh", + "sha256": "6763d219bfcd0ac02111ffa4ad527d9a6e204c08b110e17dc928f2a40fc6a1dc", + "language": "Shell", + "lines": 27, + "truncated": false, + "block": 1, + "row": 11439 + }, + { + "path": "scripts/fastq-processing/fetch_fastq_sra.sh", + "sha256": "cdd36a023f4ea30f32d35d23ea22b55b02b027cf050b310823fa0c7e5f98e563", + "language": "Shell", + "lines": 76, + "truncated": false, + "block": 1, + "row": 11658 + }, + { + "path": "scripts/fastq-processing/filter_per_sample_vcf.sh", + "sha256": "160144b745adf97a18453ab86e265903149507388b3bcba9726fdef07ffcac11", + "language": "Shell", + "lines": 32, + "truncated": false, + "block": 1, + "row": 11505 + }, + { + "path": "scripts/fastq-processing/index_per_sample_vcfs.sh", + "sha256": "3b9157cdfeada0072bfb2351b8389605322b9d1d8bd69b40b16884ef0917bd1f", + "language": "Shell", + "lines": 22, + "truncated": false, + "block": 1, + "row": 11171 + }, + { + "path": "scripts/fastq-processing/processing_files.sh", + "sha256": "fc79500fa6f61fb6aa75bfdd1cbe3ba945ea40a8c5d4e5bc6a2c06ec6eabc82d", + "language": "Shell", + "lines": 103, + "truncated": false, + "block": 1, + "row": 11710 + }, + { + "path": "scripts/fastq-processing/reads_trimming_fastp.sh", + "sha256": "448bd6b5908a5ea7e365d11a1c1b4314c89f1145784642db24558aa4b17fd7c8", + "language": "Shell", + "lines": 56, + "truncated": false, + "block": 1, + "row": 11639 + }, + { + "path": "scripts/fastq-processing/run_Haplotypecaller.sh", + "sha256": "01db7eb67e7bae5e0b8a087c3c49be58e9702cb246d42d629efb32e49084afdf", + "language": "Shell", + "lines": 45, + "truncated": false, + "block": 1, + "row": 11619 + }, + { + "path": "scripts/fastq-processing/run_featurecounts_wasp.sh", + "sha256": "88417ff382d61c3473a051760002b7959c4515624935e83affa153aeadb74401", + "language": "Shell", + "lines": 43, + "truncated": false, + "block": 1, + "row": 11604 + }, + { + "path": "scripts/fastq-processing/run_gatk_steps.sh", + "sha256": "7500affcf4eee40b7eb33ab21e607c1bfd198802a478ef8bd6b52a5c9029b07a", + "language": "Shell", + "lines": 78, + "truncated": false, + "block": 1, + "row": 11663 + }, + { + "path": "scripts/fastq-processing/star_wasp_align.sh", + "sha256": "7ef6e0192b445e4c6b6cc87d7cd7188fc5e618ffd538c14566124edc5c8090b6", + "language": "Shell", + "lines": 69, + "truncated": false, + "block": 1, + "row": 11657 + }, + { + "path": "scripts/pyNBS/pyNBS/consensus_clustering.py", + "sha256": "ef47a1899b47f8e44b7d135c6aae9f15ce674b767417726e20599b245a5380ff", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 1, + "row": 7080 + }, + { + "path": "scripts/pyNBS/pyNBS/data_import_tools.py", + "sha256": "4126b59e792ef83ff3d66c328537a707d3b68a5d52c1324676e5b4e7d7254722", + "language": "Python", + "lines": 222, + "truncated": false, + "block": 1, + "row": 8484 + }, + { + "path": "scripts/pyNBS/pyNBS/gene_conversion_tools.py", + "sha256": "27137835fe9ec98f83eff37b06641aafc6c320b8f161792c7f2fbd4f676d5c7b", + "language": "Python", + "lines": 230, + "truncated": false, + "block": 1, + "row": 8598 + }, + { + "path": "scripts/pyNBS/pyNBS/network_propagation.py", + "sha256": "c8a009f7da64148fbf544ec18b785fa840372afdce06d46c940355fc6ef1b64e", + "language": "Python", + "lines": 125, + "truncated": false, + "block": 1, + "row": 7870 + }, + { + "path": "scripts/pyNBS/pyNBS/pyNBS_core.py", + "sha256": "0db2d212090c2199fd24c90fd29cc1442b87b3404fec09e486d2261f78b9dedd", + "language": "Python", + "lines": 291, + "truncated": false, + "block": 1, + "row": 8904 + }, + { + "path": "scripts/pyNBS/pyNBS/pyNBS_plotting.py", + "sha256": "82cf675c7a4ef8da721930add58cba2dfb839d52761153ab6cd0d84f7bb66164", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 1, + "row": 7524 + }, + { + "path": "scripts/pyNBS/pyNBS/pyNBS_single.py", + "sha256": "df5eecd88836ca92e4c278b5fd02d954fc3d1c187703dcc18da4031ec1f9c3f4", + "language": "Python", + "lines": 148, + "truncated": false, + "block": 1, + "row": 7957 + }, + { + "path": "scripts/pyNBS/pyNBS/pyNBS_stability.py", + "sha256": "ae4053ca6d61c31563ef4be2301dc2dc8a16c198d1aee0a587de9082cd975420", + "language": "Python", + "lines": 375, + "truncated": false, + "block": 1, + "row": 8732 + }, + { + "path": "scripts/pyNBS/pyNBS/pyNBS_stability_plotting.py", + "sha256": "46d31a10b4e2dc9522c7ebff03714e9a411264226fbe1a48d5a2d9b91716f7d5", + "language": "Python", + "lines": 301, + "truncated": false, + "block": 1, + "row": 8161 + }, + { + "path": "scripts/pyNBS/pynbs_results/pynbs_replot.py", + "sha256": "de11e1a932ee9a1eccbc0c30e423ee05be40cf40f108e02682929e93a46b58f2", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 1, + "row": 5907 + }, + { + "path": "scripts/pyNBS/pynbs_results/pynbs_results_hd.R", + "sha256": "e3c1f817a24508df3a54ca546ce9dbbaebe14d6b7946051bcbb4abf9bf8bad5f", + "language": "R", + "lines": 216, + "truncated": false, + "block": 1, + "row": 10344 + }, + { + "path": "scripts/pyNBS/python-parallel.py", + "sha256": "8d17293268b80ea7be3362108ae158d2fa6cee75016b441ea3183c0600fb64dc", + "language": "Python", + "lines": 102, + "truncated": false, + "block": 1, + "row": 6974 + }, + { + "path": "scripts/pyNBS/run_stability.py", + "sha256": "cb6b2b5f27646253e694295d4c6bd57e75bedd93d308c901e1168f9430c0692e", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 1, + "row": 5709 + }, + { + "path": "scripts/pyNBS/setup.py", + "sha256": "1cae8cfadb9b37f1acd7a8401f513cb38e5ac5c0ab3d3e09a079ff4d27e8649c", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 1, + "row": 5743 + } + ] +} \ No newline at end of file diff --git a/manifests/6d/github.com__psymarker__leida-matlab.json b/manifests/6d/github.com__psymarker__leida-matlab.json new file mode 100644 index 0000000000000000000000000000000000000000..8329a116775f126cabdbe8f98cb8f36e5cdc4c4a --- /dev/null +++ b/manifests/6d/github.com__psymarker__leida-matlab.json @@ -0,0 +1,471 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/psymarker/leida-matlab", + "url": "https://github.com/PSYMARKER/leida-matlab", + "host": "github.com", + "commit": "ab03cbb6f987a80fd65ed1aebe75419b660b907e", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LEiDA_AnalysisCentroid.m", + "sha256": "4e1af71c1f19454ad8148cb47e18a1a123a741501854313fc04f31d6d179059b", + "language": "MATLAB", + "lines": 89, + "truncated": false, + "block": 1, + "row": 3426 + }, + { + "path": "LEiDA_AnalysisK.m", + "sha256": "b161c98e900b7efbbf862590e64122815b9a91ec97186894a6f5f88266539605", + "language": "MATLAB", + "lines": 98, + "truncated": false, + "block": 1, + "row": 3432 + }, + { + "path": "LEiDA_Start.m", + "sha256": "bc0cfbfa06ce15a1193cf25543d041fecbab8f4bc8f6bceb4c69f08285858532", + "language": "MATLAB", + "lines": 134, + "truncated": false, + "block": 1, + "row": 3682 + }, + { + "path": "LEiDA_StateTime.m", + "sha256": "fb368a0f411a9e09e063c92842934e8e4d5e80e3f2657cca237b80fda3d9c77e", + "language": "MATLAB", + "lines": 75, + "truncated": false, + "block": 1, + "row": 3284 + }, + { + "path": "LEiDA_TransitionsK.m", + "sha256": "e5e13264556a3238ef430774645b50488fd8378cd1e949d9e29c5c6dcb67cd46", + "language": "MATLAB", + "lines": 87, + "truncated": false, + "block": 1, + "row": 3407 + }, + { + "path": "LICENSE", + "sha256": "78c8c54901b977a9f72c887f959c26c3f8f4000b2684b9363d3d80dedf3ea7b9", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2111 + }, + { + "path": "README.md", + "sha256": "cefa4c2a376247af72057747109c7cb3aa346c61c7f381643db3566e08d30f18", + "language": "Text", + "lines": 202, + "truncated": false, + "block": 1, + "row": 11986 + }, + { + "path": "utilities/analyses_scripts/EigenVectors_VoxelSpace.m", + "sha256": "f3919dc6d899031596e6d47e5d9ed0ce83a6df713e8db3fea78090c901e4ed70", + "language": "MATLAB", + "lines": 149, + "truncated": false, + "block": 1, + "row": 3721 + }, + { + "path": "utilities/analyses_scripts/LEiDA_cluster.m", + "sha256": "a9303e3b8141e2a56c2def5478c5001a70a4ddcbf2ed5fac5ac50f3dc08d9434", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 1, + "row": 3217 + }, + { + "path": "utilities/analyses_scripts/LEiDA_data.m", + "sha256": "aa2b151c3aa21e96641273492c903cd060a4d0beb2813946dd59b8734acc7363", + "language": "MATLAB", + "lines": 124, + "truncated": false, + "block": 1, + "row": 3621 + }, + { + "path": "utilities/analyses_scripts/LEiDA_stats_DwellTime.m", + "sha256": "e60bb75b120deb48c8837e8534f60b4da93cec24aaedc495b2122ada5adee21a", + "language": "MATLAB", + "lines": 213, + "truncated": false, + "block": 1, + "row": 3963 + }, + { + "path": "utilities/analyses_scripts/LEiDA_stats_FracOccup.m", + "sha256": "863428b431a1f72c0deed7a5ea38f91ebe4cbce783ecec875425bde64121bfe2", + "language": "MATLAB", + "lines": 184, + "truncated": false, + "block": 1, + "row": 3904 + }, + { + "path": "utilities/analyses_scripts/LEiDA_stats_TransitionMatrix.m", + "sha256": "17cd45e8b3d864e462a4441b7e8bb35052ed74a78a6951ae0f447871c66e17c6", + "language": "MATLAB", + "lines": 196, + "truncated": false, + "block": 1, + "row": 3940 + }, + { + "path": "utilities/analyses_scripts/Overlap_LEiDA_Yeo.m", + "sha256": "8d53d395c784a121f95ca1ea7706b89e854b0e16342165bec79adb01fb45122f", + "language": "MATLAB", + "lines": 84, + "truncated": false, + "block": 1, + "row": 3343 + }, + { + "path": "utilities/analyses_scripts/Parcellate.m", + "sha256": "05ba7de32110f77d92564bfd93ee18810727c394c51f3cfd0716247db7794f23", + "language": "MATLAB", + "lines": 92, + "truncated": false, + "block": 1, + "row": 3402 + }, + { + "path": "utilities/analyses_scripts/Parcellate_ABIDE_func_preproc.m", + "sha256": "fea18f763c2dc60b43632cc30a254553a8281647424e217a8f62a934e5940590", + "language": "MATLAB", + "lines": 144, + "truncated": false, + "block": 1, + "row": 3785 + }, + { + "path": "utilities/analyses_scripts/TemporalFiltering.m", + "sha256": "85cd79694efaae20e6619729cd56dee68eb256ef85170f6ed904ed4fd071fd0e", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 1, + "row": 2581 + }, + { + "path": "utilities/analyses_scripts/append_tag.m", + "sha256": "38e78d07b81660794be2a459223bd69e663fb90bd2e40d964c4664e565b547ea", + "language": "MATLAB", + "lines": 48, + "truncated": false, + "block": 1, + "row": 3071 + }, + { + "path": "utilities/analyses_scripts/bootstrap_within_permutation_paired_samples.m", + "sha256": "262ab010d971294b6ff7c5344acd5b7100551f8fc748190546b7f9c4d0d106b9", + "language": "MATLAB", + "lines": 186, + "truncated": false, + "block": 1, + "row": 3857 + }, + { + "path": "utilities/analyses_scripts/bootstrap_within_permutation_ttest2.m", + "sha256": "94f3adb188cb45db15fa3521dc810e3173d3eb95b2a5955b150c10350d751ca3", + "language": "MATLAB", + "lines": 222, + "truncated": false, + "block": 1, + "row": 3947 + }, + { + "path": "utilities/analyses_scripts/cluster_performance.m", + "sha256": "40b14954729117b9595bcb9cdeadffe8fb8f1f39c3836c54a850a832c5333df9", + "language": "MATLAB", + "lines": 111, + "truncated": false, + "block": 1, + "row": 3471 + }, + { + "path": "utilities/analyses_scripts/cluster_stability.m", + "sha256": "86094a66217f5703609a59892551d56e109ce9be65e682ea994c33a9fe92ef9c", + "language": "MATLAB", + "lines": 162, + "truncated": false, + "block": 1, + "row": 3833 + }, + { + "path": "utilities/analyses_scripts/dunns.m", + "sha256": "d9dd73aaded0de35438d861cdeeadb6efc31c22ecfc7c084928113ca05efe1b2", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 1, + "row": 2598 + }, + { + "path": "utilities/analyses_scripts/rand_index.m", + "sha256": "88e4ff6631a80c46597baeab83eb4a08afcd92a6abeba28efc3e033a7464ec5c", + "language": "MATLAB", + "lines": 121, + "truncated": false, + "block": 1, + "row": 3412 + }, + { + "path": "utilities/figures_scripts/Plot_C_boxplot_DT.m", + "sha256": "bb5c8ad11609d1c426f92ae81d3659b96197b62b25c71c1a98a8f23269eee9f9", + "language": "MATLAB", + "lines": 128, + "truncated": false, + "block": 1, + "row": 3640 + }, + { + "path": "utilities/figures_scripts/Plot_C_boxplot_FO.m", + "sha256": "878fe731207a8e1fd290003d16bb742d4d6210bf4ddcbd8b57be2dddcd998304", + "language": "MATLAB", + "lines": 126, + "truncated": false, + "block": 1, + "row": 3648 + }, + { + "path": "utilities/figures_scripts/Plot_C_summary.m", + "sha256": "54eae374d923ae77fd42a243ca4ff0ba8d7f62af252db31cae3069907ecdde59", + "language": "MATLAB", + "lines": 299, + "truncated": false, + "block": 1, + "row": 4065 + }, + { + "path": "utilities/figures_scripts/Plot_C_vector_labelled.m", + "sha256": "d56659d7d11335de10f1402b810f67c03f3948396c922ee7d64c81b48c39d0f8", + "language": "MATLAB", + "lines": 72, + "truncated": false, + "block": 1, + "row": 3238 + }, + { + "path": "utilities/figures_scripts/Plot_C_vector_ordered.m", + "sha256": "d713c83062428aacec575c073648b15b32db10f945975f96b1531dd608664148", + "language": "MATLAB", + "lines": 84, + "truncated": false, + "block": 1, + "row": 3312 + }, + { + "path": "utilities/figures_scripts/Plot_Centroid_Pyramid.m", + "sha256": "fd6e29b35b6c85cc22325743f3fad0b2836ad644d897af1136640bfc4b7fda64", + "language": "MATLAB", + "lines": 137, + "truncated": false, + "block": 1, + "row": 3726 + }, + { + "path": "utilities/figures_scripts/Plot_DwellTime.m", + "sha256": "b42cf333bfb9a8e58e059455419d87abfdb07bbbefc2db1b191f9e0c1f9eff81", + "language": "MATLAB", + "lines": 258, + "truncated": false, + "block": 1, + "row": 4071 + }, + { + "path": "utilities/figures_scripts/Plot_FracOccup.m", + "sha256": "fa829e0e4b8cd3b1a28b043f538d16fbb78d4eb8da910a725b3af4993ca29abc", + "language": "MATLAB", + "lines": 258, + "truncated": false, + "block": 1, + "row": 4077 + }, + { + "path": "utilities/figures_scripts/Plot_K_3Dbrain.m", + "sha256": "295c92465a667778b889367fe04c31174ce9ad9447361183ee182adee5c5016a", + "language": "MATLAB", + "lines": 153, + "truncated": false, + "block": 1, + "row": 3773 + }, + { + "path": "utilities/figures_scripts/Plot_K_V1_VoxelSpace.m", + "sha256": "1e29c0a2b57adbb4164e13dbccd5a8a04dac8356da7b11ce17a7c2560205c268", + "language": "MATLAB", + "lines": 161, + "truncated": false, + "block": 1, + "row": 3750 + }, + { + "path": "utilities/figures_scripts/Plot_K_V1_VoxelSpace_Slice.m", + "sha256": "a995b18aeb8f8e88b14f7b26af7fc727dacefd51ae2dadadcabe5ed54daf7a3b", + "language": "MATLAB", + "lines": 97, + "truncated": false, + "block": 1, + "row": 3341 + }, + { + "path": "utilities/figures_scripts/Plot_K_boxplot_DT.m", + "sha256": "0c0754d5470b5fdb1d24ce2fab4175cd671805cb0e8724031c75a7815c12b555", + "language": "MATLAB", + "lines": 138, + "truncated": false, + "block": 1, + "row": 3695 + }, + { + "path": "utilities/figures_scripts/Plot_K_boxplot_FO.m", + "sha256": "932e2370ea105f7a1fef4be024bef6172053f9696fc795522395d5bd04ace0f5", + "language": "MATLAB", + "lines": 137, + "truncated": false, + "block": 1, + "row": 3699 + }, + { + "path": "utilities/figures_scripts/Plot_K_diffs_transitions.m", + "sha256": "cfa265768ae0802935c73bb665d026ed2d64a3358dcbb4c31244011edea7b447", + "language": "MATLAB", + "lines": 113, + "truncated": false, + "block": 1, + "row": 3577 + }, + { + "path": "utilities/figures_scripts/Plot_K_links_in_cortex.m", + "sha256": "77632bda4dd6c39ceb908064d7ba4a3c2f291eb37eb160aae7f20734bab0ddfd", + "language": "MATLAB", + "lines": 112, + "truncated": false, + "block": 1, + "row": 3493 + }, + { + "path": "utilities/figures_scripts/Plot_K_matrix.m", + "sha256": "12909eb399a49836f6253ab6fa4db0551dcec1740fcd99fd75cac65407ff3f15", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 1, + "row": 3064 + }, + { + "path": "utilities/figures_scripts/Plot_K_nodes_in_cortex.m", + "sha256": "3aeb28822df0023a4c9f6f5d3931d57311d504a71d83f386fbd7c321005cd05f", + "language": "MATLAB", + "lines": 100, + "truncated": false, + "block": 1, + "row": 3413 + }, + { + "path": "utilities/figures_scripts/Plot_K_overlap_yeo_nets.m", + "sha256": "3605f0920a76a417edcd2ee2006e32e46a7d17e5c385f486413908d3789ee2ae", + "language": "MATLAB", + "lines": 85, + "truncated": false, + "block": 1, + "row": 3497 + }, + { + "path": "utilities/figures_scripts/Plot_K_repertoire.m", + "sha256": "eee2999f155027a88413d1a18410f645e9d13b085660d5d2354af6297f3ab171", + "language": "MATLAB", + "lines": 314, + "truncated": false, + "block": 1, + "row": 4115 + }, + { + "path": "utilities/figures_scripts/Plot_K_state_time.m", + "sha256": "0b3c91bfbae680c5a1a2cbebda89a2111b6c201b107a27c5df9ab6a765dfcd4c", + "language": "MATLAB", + "lines": 110, + "truncated": false, + "block": 1, + "row": 3579 + }, + { + "path": "utilities/figures_scripts/Plot_K_tpm.m", + "sha256": "93c4d173f1b08faf504e41940baa2f4b3877de731c7a6a8ed9e1115f07c98b89", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 1, + "row": 3265 + }, + { + "path": "utilities/figures_scripts/Plot_K_vector_labelled.m", + "sha256": "a6a3a4e246135f45387a7247033325bbde3c8f82218f470864fd17af436a1072", + "language": "MATLAB", + "lines": 72, + "truncated": false, + "block": 1, + "row": 3232 + }, + { + "path": "utilities/figures_scripts/Plot_K_vector_numbered.m", + "sha256": "acba824b40bb5b984855ebb5ab927f93fc4bacc1f6ef1ecf79b6d2d073b74885", + "language": "MATLAB", + "lines": 61, + "truncated": false, + "block": 1, + "row": 3132 + }, + { + "path": "utilities/figures_scripts/Plot_subj_cluster_blocks.m", + "sha256": "2028680cd01459c2efa802a448207238e6646f55e3c2de7e91e266b83116e050", + "language": "MATLAB", + "lines": 100, + "truncated": false, + "block": 1, + "row": 3380 + }, + { + "path": "utilities/figures_scripts/Plot_subj_stairs.m", + "sha256": "2edd0ef9daa8f262a66c009ff9bace8f273a1cdfa0f15d8c4fe26c22ff14ea2b", + "language": "MATLAB", + "lines": 90, + "truncated": false, + "block": 1, + "row": 3308 + }, + { + "path": "utilities/figures_scripts/linspecer.m", + "sha256": "c5352b7395a10b29befe8567bcda91d8ef24b5fab684c62d4629e958fcce20c8", + "language": "MATLAB", + "lines": 261, + "truncated": false, + "block": 1, + "row": 3930 + }, + { + "path": "utilities/figures_scripts/subplot_tight.m", + "sha256": "0812a3d4ac64f31fabba0f63204b65aa897afde18fb5abb61765c55be93e2b1e", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 1, + "row": 3245 + } + ] +} \ No newline at end of file diff --git a/manifests/6d/zenodo__20398246.json b/manifests/6d/zenodo__20398246.json new file mode 100644 index 0000000000000000000000000000000000000000..50e850bde0dafa11c871aba0c102b8c938009cc7 --- /dev/null +++ b/manifests/6d/zenodo__20398246.json @@ -0,0 +1,174 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:20398246", + "url": "https://doi.org/10.5281/zenodo.20398246", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "419ac0c5c9e01945bc43fdcb25cd97e4895efa3ab62b71b02d0cd3d1bc25a795", + "language": "Text", + "lines": 389, + "truncated": false, + "block": 1, + "row": 11983 + }, + { + "path": "code/config.py", + "sha256": "48580d55e998a0dbe19b4114fc9b6be0ffeaa94089bb62ebe8f7322730a1c35c", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 1, + "row": 6575 + }, + { + "path": "code/data_class.py", + "sha256": "422c1036f961f5997886865769620fad987cef3bd85b51afb9e2beb97d965330", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 1, + "row": 5419 + }, + { + "path": "code/data_loader.py", + "sha256": "ec5ad5129cc92a88066bc08778b870c141dcdad7798817568015f2025a149530", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 1, + "row": 6508 + }, + { + "path": "code/encoder.py", + "sha256": "aa1f830b5b23236613f269a779466d35f6d4632b44b605ef69f9409cabe539d6", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 1, + "row": 6899 + }, + { + "path": "code/metrics.py", + "sha256": "542ac0a78f18991a793c2813f569fb9b58de0fab2d62284906aa5ab97bfb3ecc", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5306 + }, + { + "path": "code/models.py", + "sha256": "83827f3eca8b7fd5ed0969409685955db7fdc4c4dc9c93db6022e602aa5f6ce5", + "language": "Python", + "lines": 285, + "truncated": false, + "block": 1, + "row": 8604 + }, + { + "path": "code/predict.py", + "sha256": "4e20fadc30294ccffe475e340c73cddff10ed8d6e7de62d4822bb23fde41aeb6", + "language": "Python", + "lines": 273, + "truncated": false, + "block": 1, + "row": 8580 + }, + { + "path": "code/split_fold.py", + "sha256": "51ad69f2b3b2a8baddaf4c7380f0f9a9ccb34323130319e6692b8509afbf80a7", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 1, + "row": 6473 + }, + { + "path": "code/train.py", + "sha256": "7a29118e0122cdaa3cedf8c69b8d07c6a7f3a526ef255d2e7432771c5382b512", + "language": "Python", + "lines": 200, + "truncated": false, + "block": 1, + "row": 8029 + }, + { + "path": "code/utils.py", + "sha256": "34d679db9c847d69e1f60215203d8ea2400a4c656ec6fea89725216cfdcb868d", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 1, + "row": 5543 + }, + { + "path": "code_database/add_percentile_p005.py", + "sha256": "02d7e535a71fc20bf2121e929e98d7d765a2ab679bccb434d04eb6fa9459b025", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 1, + "row": 7570 + }, + { + "path": "code_database/filter_bed_by_seq.py", + "sha256": "97b2dbb2eb953c76c55573803f0d21de8bb0b8012f7d2d4170f359cb2113173f", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 5921 + }, + { + "path": "code_database/merge_chunk.py", + "sha256": "d04949c3d25669c7b251a734fac9fcdcd2316a24f2437f49c4bc294adb5d0c9f", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 1, + "row": 6024 + }, + { + "path": "code_database/predict_substrate_abundance_of_human_genome.py", + "sha256": "3efbb747ccbfd506033958a15d815ce1f07f14d28b2d0452bc7cd720a3a61c88", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 1, + "row": 7362 + }, + { + "path": "code_database/separate_file_by_reference.py", + "sha256": "d7b4b02dde7f404a25ef8385d218228c3c98af361438f252409534f11c197a89", + "language": "Python", + "lines": 77, + "truncated": false, + "block": 1, + "row": 6603 + }, + { + "path": "code_database/stats_pred_for_each_gRNA.py", + "sha256": "0495729278fbb6fd55e9e68323d8fec676872830a7e84bc6e6be357e312a998e", + "language": "Python", + "lines": 197, + "truncated": false, + "block": 1, + "row": 8121 + }, + { + "path": "threshold_free_eval/eval_for_top_k_against_top_k_prediction.py", + "sha256": "d72aaa3a25fabe1cfd3901ad467b1e623365e204138f7b7d6c6d2dd7c69cba3b", + "language": "Python", + "lines": 303, + "truncated": false, + "block": 1, + "row": 8857 + } + ] +} \ No newline at end of file diff --git a/manifests/6e/gin.g-node.org__panagiotis__anorexia-nervosa-food-and-iaps-experiment.json b/manifests/6e/gin.g-node.org__panagiotis__anorexia-nervosa-food-and-iaps-experiment.json new file mode 100644 index 0000000000000000000000000000000000000000..64a9fb52d72a4de3c63adbe8c3c2a5fef4bd67c1 --- /dev/null +++ b/manifests/6e/gin.g-node.org__panagiotis__anorexia-nervosa-food-and-iaps-experiment.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "gin.g-node.org/panagiotis/anorexia-nervosa-food-and-iaps-experiment", + "url": "https://gin.g-node.org/Panagiotis/Anorexia-Nervosa-Food-and-IAPS-experiment.git", + "host": "gin.g-node.org", + "commit": "65d86f58260ffee126316e00bc3094db5f507e37", + "license": "CC0-1.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "46633d9b124044cc1ff3d3891e45d3d866b9c6d29896d62d81072b6c5868816b", + "language": "License", + "lines": 39, + "truncated": false, + "block": 1, + "row": 2209 + }, + { + "path": "README.md", + "sha256": "568ef4c8a2f219a3a1fdb5ee831924e947ac183be87a7a6d47446c2da5305947", + "language": "Text", + "lines": 3, + "truncated": false, + "block": 1, + "row": 11764 + } + ] +} \ No newline at end of file diff --git a/manifests/6f/github.com__seung-lab__cloud-volume.json b/manifests/6f/github.com__seung-lab__cloud-volume.json new file mode 100644 index 0000000000000000000000000000000000000000..d5507d1119b0f53cade18ac430d0c4ad0872be51 --- /dev/null +++ b/manifests/6f/github.com__seung-lab__cloud-volume.json @@ -0,0 +1,885 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/seung-lab/cloud-volume", + "url": "https://github.com/seung-lab/cloud-volume", + "host": "github.com", + "commit": "23724c93e6a7fe81c7b2785fb4a324cf1fea2d6f", + "license": "BSD-3-Clause", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "a035602edb151af9f6d9a41d986c53347d4817e9afda9f442cacccc0b4f76d69", + "language": "License", + "lines": 29, + "truncated": false, + "block": 2, + "row": 1149 + }, + { + "path": "README.md", + "sha256": "131e7f57bad34edd34448543fb8ab45ed655f2d3cf123106ba5c7de27740e366", + "language": "Text", + "lines": 743, + "truncated": false, + "block": 2, + "row": 2660 + }, + { + "path": "benchmarks/benchmark.py", + "sha256": "e50daf20955733a4463583ef70c663efc75641bb6e72be3da5179a1b0de6106b", + "language": "Python", + "lines": 191, + "truncated": false, + "block": 2, + "row": 1910 + }, + { + "path": "benchmarks/create_test_volumes.py", + "sha256": "ad85119a4351c082fb40597022439318d7e9cf7523f4a6c0c406a4a9fe118a62", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 2, + "row": 1707 + }, + { + "path": "benchmarks/plot.py", + "sha256": "0494a74014db13def37b6a119d6c43a0718cf151dcd7e68cc41bb5a4be0ce8c4", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 2, + "row": 1722 + }, + { + "path": "cloudvolume/__init__.py", + "sha256": "2232874083be482d9f51135a5b54b5cdd4f7aa0e71d5352832fb73d8e402279b", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 2, + "row": 1845 + }, + { + "path": "cloudvolume/cacheservice.py", + "sha256": "2a4569931f2d5129a873acf10df6cfcbc83bc6fcc46afbf3e19af734fec6727e", + "language": "Python", + "lines": 657, + "truncated": false, + "block": 2, + "row": 2163 + }, + { + "path": "cloudvolume/chunks.py", + "sha256": "7a4fada7a1016e0ad03b19d70831a85cdf58da8d75eaabccd38015cdaf788d14", + "language": "Python", + "lines": 601, + "truncated": false, + "block": 2, + "row": 2165 + }, + { + "path": "cloudvolume/cloudvolume.py", + "sha256": "ac8ba5d014b4dc72270d3e2bcdab47136f8d9f7e93703433ac0fce412ae69b32", + "language": "Python", + "lines": 446, + "truncated": false, + "block": 2, + "row": 2160 + }, + { + "path": "cloudvolume/compression.py", + "sha256": "4749818a8123275806a009971aabdb308993cf2e379a0c4b91b5c4eec6390c11", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 2, + "row": 1604 + }, + { + "path": "cloudvolume/connectionpools.py", + "sha256": "f102f71d79576b5ab8f0924c9f958b3b59ec22320f9388913467bebc742c0b9d", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 2, + "row": 1856 + }, + { + "path": "cloudvolume/dask.py", + "sha256": "8dec963c423136fb811ffd9cc5c240d8f2532883d65579e60bfb57cd36073659", + "language": "Python", + "lines": 155, + "truncated": false, + "block": 2, + "row": 1957 + }, + { + "path": "cloudvolume/datasource/__init__.py", + "sha256": "55f7e356c01ec6d846981c552cf5c30bac2ba1c3f01a5cc62bbfc4070558df7a", + "language": "Python", + "lines": 149, + "truncated": false, + "block": 2, + "row": 1931 + }, + { + "path": "cloudvolume/datasource/boss/__init__.py", + "sha256": "eb22f283d8a4799bd0ede639063b58c680a6b50e40907054e3d30ddb21786570", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 2, + "row": 1765 + }, + { + "path": "cloudvolume/datasource/boss/image.py", + "sha256": "03be0e0565c2ab4027424ba326b7d9f57c4b16ab60a798fe58b21cb4b6a6251a", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 2, + "row": 1902 + }, + { + "path": "cloudvolume/datasource/boss/metadata.py", + "sha256": "2035a216dbdad698228299b86af498ae97ff9a31fc45294e876dbfc84a8b5e5e", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 2, + "row": 1790 + }, + { + "path": "cloudvolume/datasource/graphene/__init__.py", + "sha256": "0bc64ab87a046719101e8b8b47fdb84eb2893cc9f601e30b6460da81ccefc052", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 2, + "row": 1837 + }, + { + "path": "cloudvolume/datasource/graphene/mesh/__init__.py", + "sha256": "6e0d37aefc86f12f0ee5e911a1609d42af29f35b3625cfb342079c1f9b7ce0fd", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 2, + "row": 1726 + }, + { + "path": "cloudvolume/datasource/graphene/mesh/metadata.py", + "sha256": "484f6eb3d6098b8754710523c3ed807256858d03af6e3b74d2263c1b14a0d567", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 2, + "row": 1626 + }, + { + "path": "cloudvolume/datasource/graphene/mesh/sharded.py", + "sha256": "72c779e936c76c26f62c39ed0af17ec58a6679380d9bf01a08024efc631b3505", + "language": "Python", + "lines": 338, + "truncated": false, + "block": 2, + "row": 2099 + }, + { + "path": "cloudvolume/datasource/graphene/mesh/unsharded.py", + "sha256": "a04eace03653f54861309a5f2a72a34d3730b89829b502ddeeecc818d10cccc8", + "language": "Python", + "lines": 255, + "truncated": false, + "block": 2, + "row": 2055 + }, + { + "path": "cloudvolume/datasource/graphene/metadata.py", + "sha256": "4cc7a40684ed207fc8ee1ebad47769abdb0cf542fd8517437f104fe695f3baa1", + "language": "Python", + "lines": 465, + "truncated": false, + "block": 2, + "row": 2129 + }, + { + "path": "cloudvolume/datasource/graphene/sharding.py", + "sha256": "41801508976c033a8324b562153b8421fe6e0e3718c5f2525bc61de99c249a0f", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 2, + "row": 1655 + }, + { + "path": "cloudvolume/datasource/n5/__init__.py", + "sha256": "14e35d7bf1bae9aa7b7b55f3238fa53c4f4a86528c9fad7b669b90b12e2f29e0", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 2, + "row": 1763 + }, + { + "path": "cloudvolume/datasource/n5/image.py", + "sha256": "1117f72658164d0f9314fc84103b98e590f1cda442da1477cbea317418d71b77", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 2, + "row": 1954 + }, + { + "path": "cloudvolume/datasource/n5/metadata.py", + "sha256": "7d2f0df3476b57a5788d7259354d517a00aae39d5aa3a396d6a255992ee41c29", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 2, + "row": 1892 + }, + { + "path": "cloudvolume/datasource/precomputed/__init__.py", + "sha256": "c87bcf57bcf5514604adf1fd92e6e16aa3801dd0afb144e7a33cc246a056dfdd", + "language": "Python", + "lines": 226, + "truncated": false, + "block": 2, + "row": 1980 + }, + { + "path": "cloudvolume/datasource/precomputed/annotation/__init__.py", + "sha256": "902bb974f9e2069aabe14c3379602f2639d6fdf07d3d2f1a5bcb1245d84031cb", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 2, + "row": 1858 + }, + { + "path": "cloudvolume/datasource/precomputed/annotation/metadata.py", + "sha256": "1c4d06ff8f91c04e28a22d61c7dea5055ce4661aa9a04f497efe8c81c2b193d8", + "language": "Python", + "lines": 480, + "truncated": false, + "block": 2, + "row": 2127 + }, + { + "path": "cloudvolume/datasource/precomputed/annotation/reader.py", + "sha256": "5b0f41c9cdfd4641bc0d14f6660e21a4578ad93383301a43fbf28d4756beb35c", + "language": "Python", + "lines": 354, + "truncated": false, + "block": 2, + "row": 2105 + }, + { + "path": "cloudvolume/datasource/precomputed/common.py", + "sha256": "f47bb1013bef770b40153a8b4c463d953e90830f31d2058d92c9f04b6d632b80", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 2, + "row": 1869 + }, + { + "path": "cloudvolume/datasource/precomputed/image/__init__.py", + "sha256": "3b6069b7a0231cd1656b4829d306a02af5d0ef0175393c9b0111ee104ad324f2", + "language": "Python", + "lines": 890, + "truncated": false, + "block": 2, + "row": 2194 + }, + { + "path": "cloudvolume/datasource/precomputed/image/common.py", + "sha256": "461d45db8586629a5639c5674ff6ab5d758400e49b69fe81f2eceed35cda8b26", + "language": "Python", + "lines": 227, + "truncated": false, + "block": 2, + "row": 1973 + }, + { + "path": "cloudvolume/datasource/precomputed/image/rx.py", + "sha256": "82ee97e0504c4df3836ae800c8eb86ecd7d3f35a330940d77b88474b4184ca34", + "language": "Python", + "lines": 1080, + "truncated": false, + "block": 2, + "row": 2210 + }, + { + "path": "cloudvolume/datasource/precomputed/image/tx.py", + "sha256": "75460ee123536b3e08508158190bf9b42a6ce7134c625f1f827505fd7b1d1df3", + "language": "Python", + "lines": 475, + "truncated": false, + "block": 2, + "row": 2126 + }, + { + "path": "cloudvolume/datasource/precomputed/image/xfer.py", + "sha256": "91339c2a188e31912f63671856efbcf3ae5e862fc0edc52d4a238f6009e9f4c9", + "language": "Python", + "lines": 493, + "truncated": false, + "block": 2, + "row": 2141 + }, + { + "path": "cloudvolume/datasource/precomputed/mesh/__init__.py", + "sha256": "818e17b09c1db989ad4a5114ce28c8b5af626c4a8d57834dc643c54270b8833d", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 2, + "row": 1769 + }, + { + "path": "cloudvolume/datasource/precomputed/mesh/common.py", + "sha256": "64451d87b920e62361aec2a5ebcb68616fadde614178b13d9acad5decd24c958", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 2, + "row": 1649 + }, + { + "path": "cloudvolume/datasource/precomputed/mesh/metadata.py", + "sha256": "f3354218c4878638640485aa19bda669f14f1ff47fedc25b456d8cf8b6cccff4", + "language": "Python", + "lines": 225, + "truncated": false, + "block": 2, + "row": 1971 + }, + { + "path": "cloudvolume/datasource/precomputed/mesh/multilod.py", + "sha256": "c11e6ee8c7652a762ac697963b1291bdcdfe57202b31c3ccbeb089ad0e3fa1e1", + "language": "Python", + "lines": 528, + "truncated": false, + "block": 2, + "row": 2159 + }, + { + "path": "cloudvolume/datasource/precomputed/mesh/unsharded.py", + "sha256": "5ddad8959c73b102bf62be653c8a0cab02aad98df98fcd53afd6c2d54aa3ddc0", + "language": "Python", + "lines": 371, + "truncated": false, + "block": 2, + "row": 2090 + }, + { + "path": "cloudvolume/datasource/precomputed/metadata.py", + "sha256": "86f5146552db9e628eb233054de8aefb295d02862529cdbc621020302da1eb86", + "language": "Python", + "lines": 885, + "truncated": false, + "block": 2, + "row": 2192 + }, + { + "path": "cloudvolume/datasource/precomputed/mmh3.py", + "sha256": "aab548c9b041945f5b4ce4fe84ad0f15c94716a2a3d45cd6da34c32e6769949a", + "language": "Python", + "lines": 451, + "truncated": false, + "block": 2, + "row": 2128 + }, + { + "path": "cloudvolume/datasource/precomputed/sharding.py", + "sha256": "cae907b7e7c4fb33658d691eb3e67316ee531a371a621982bbff704a878d7537", + "language": "Python", + "lines": 1260, + "truncated": false, + "block": 2, + "row": 2228 + }, + { + "path": "cloudvolume/datasource/precomputed/skeleton/__init__.py", + "sha256": "55d3a8f886de2bcd62f6f3c67f9829ecbb58c325a550523e666dd2b9b1461be1", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 2, + "row": 1742 + }, + { + "path": "cloudvolume/datasource/precomputed/skeleton/metadata.py", + "sha256": "990d969444e4aba80c100898e99cb7bba63f991448e449e94d16005d8ebbdf57", + "language": "Python", + "lines": 218, + "truncated": false, + "block": 2, + "row": 1959 + }, + { + "path": "cloudvolume/datasource/precomputed/skeleton/sharded.py", + "sha256": "55aaf34a77eaf5f54b16bebe9bb64df4770266bfce90c489ce7c8183a745dc90", + "language": "Python", + "lines": 158, + "truncated": false, + "block": 2, + "row": 1922 + }, + { + "path": "cloudvolume/datasource/precomputed/skeleton/unsharded.py", + "sha256": "9f898089c28fdd19e7d3a0e93795f462b9e404edfa949993dbce2b67dbfb74ef", + "language": "Python", + "lines": 184, + "truncated": false, + "block": 2, + "row": 1940 + }, + { + "path": "cloudvolume/datasource/precomputed/spatial_index.py", + "sha256": "407f312fa8109824443ebf681dd49b5b8d60dac84039f5fc31bbcb0a8121db9a", + "language": "Python", + "lines": 1084, + "truncated": false, + "block": 2, + "row": 2217 + }, + { + "path": "cloudvolume/datasource/zarr/__init__.py", + "sha256": "a215e17b54126b578e9f183e0c172ff2a9771b5c2342351bb92385967deae273", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 2, + "row": 1647 + }, + { + "path": "cloudvolume/datasource/zarr2/__init__.py", + "sha256": "e09789c0e7cacaeb05919023955e5e9fb52ae9d15131619c324d3494405348f2", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 2, + "row": 1767 + }, + { + "path": "cloudvolume/datasource/zarr2/image.py", + "sha256": "5103775f5b9c16d2c16b2c99fa8960e3dc04b1a7ef47ee5e993c414db84c2414", + "language": "Python", + "lines": 348, + "truncated": false, + "block": 2, + "row": 2078 + }, + { + "path": "cloudvolume/datasource/zarr2/metadata.py", + "sha256": "2992b38d702d49ec5e7c808b0366e5e3248ca1d7d38788e89bd78b1674f36417", + "language": "Python", + "lines": 741, + "truncated": false, + "block": 2, + "row": 2161 + }, + { + "path": "cloudvolume/datasource/zarr3/__init__.py", + "sha256": "cef38de8eb8859abdfbd24cca9f074aa3b3f9c508486c805c2c2b033f47f8731", + "language": "Python", + "lines": 65, + "truncated": false, + "block": 2, + "row": 1766 + }, + { + "path": "cloudvolume/datasource/zarr3/image.py", + "sha256": "c242207a234b40ef37e97d43c86db0066c4fa9f3f273cef59c62561290c73d9f", + "language": "Python", + "lines": 411, + "truncated": false, + "block": 2, + "row": 2112 + }, + { + "path": "cloudvolume/datasource/zarr3/metadata.py", + "sha256": "977ac32582d5042eaae4655a9172d665f2fee0930dfabe6c4d08b371b2183c7a", + "language": "Python", + "lines": 799, + "truncated": false, + "block": 2, + "row": 2183 + }, + { + "path": "cloudvolume/exceptions.py", + "sha256": "cc34ff45d70bf155cf626bd3966f2039d067f3c6bc185a1d0afdd5ac8535d322", + "language": "Python", + "lines": 126, + "truncated": false, + "block": 2, + "row": 1839 + }, + { + "path": "cloudvolume/frontends/__init__.py", + "sha256": "1e507f1be75efbd1e032efa5efedda164d5b816ef9fae18542711213df9aa062", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 2, + "row": 1611 + }, + { + "path": "cloudvolume/frontends/graphene.py", + "sha256": "8308a9a39054c9ded91d2ea192bef54d2cadf93abba95aeeece31531442665d3", + "language": "Python", + "lines": 980, + "truncated": false, + "block": 2, + "row": 2208 + }, + { + "path": "cloudvolume/frontends/precomputed.py", + "sha256": "27857c1011710041166eca52bbcf7670983d665e13e984d1baec332c0c2072e2", + "language": "Python", + "lines": 1248, + "truncated": false, + "block": 2, + "row": 2225 + }, + { + "path": "cloudvolume/lib.py", + "sha256": "2a3a9ff6ce9436914a7b0ef3d130c5075b92788c16af1b8d0bdd1215610aa026", + "language": "Python", + "lines": 1211, + "truncated": false, + "block": 2, + "row": 2216 + }, + { + "path": "cloudvolume/lru.py", + "sha256": "e614a97dbc567f13ad50e883c3a8a273a2f3125d83f289aa857af7933bfc6178", + "language": "Python", + "lines": 349, + "truncated": false, + "block": 2, + "row": 2044 + }, + { + "path": "cloudvolume/mesh.py", + "sha256": "e31c957f4665dea86cbbcbd2a4b71a13e5c1d4bc170682a6699628d038a0a914", + "language": "Python", + "lines": 527, + "truncated": false, + "block": 2, + "row": 2143 + }, + { + "path": "cloudvolume/paths.py", + "sha256": "6b0c01c7285e3c98e5c0bd9abe93768af792e011920d39b8da8e5ebc24e639a3", + "language": "Python", + "lines": 207, + "truncated": false, + "block": 2, + "row": 1960 + }, + { + "path": "cloudvolume/provenance.py", + "sha256": "c2404e598748bf50b23e3318b9c7ee9127483108b075522ef65d90a249bac7ba", + "language": "Python", + "lines": 159, + "truncated": false, + "block": 2, + "row": 1882 + }, + { + "path": "cloudvolume/scheduler.py", + "sha256": "8164ff72d879cad6601b74b0194c4d3c5df2be26c8afbc37bd8259bdfab6e2aa", + "language": "Python", + "lines": 165, + "truncated": false, + "block": 2, + "row": 1867 + }, + { + "path": "cloudvolume/secrets.py", + "sha256": "27a53a4a652aba18163a61f54db5cc0b4cd3ae607e5bd263a51b4593ee8397c1", + "language": "Python", + "lines": 226, + "truncated": false, + "block": 2, + "row": 1990 + }, + { + "path": "cloudvolume/server.py", + "sha256": "89ebe8f8ae179e103f52e08f2ad22fe0649c6be340114d37115fb192685192ad", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 2, + "row": 1854 + }, + { + "path": "cloudvolume/sharedmemory.py", + "sha256": "3860d74bc3d59e82f9e5f47a66f37881cfc6b5e0da7297e9ace0437f880988b4", + "language": "Python", + "lines": 209, + "truncated": false, + "block": 2, + "row": 1988 + }, + { + "path": "cloudvolume/skeleton.py", + "sha256": "2780411520811eaca7c2894a7cd40cab1c7414534f964308c91b0a14b4807cd4", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 2, + "row": 1610 + }, + { + "path": "cloudvolume/storage/__init__.py", + "sha256": "802c150d294f3418a67e2cbd2ddf01caceb0e2b20d1f5c749931b9399ec661f8", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 2, + "row": 1690 + }, + { + "path": "cloudvolume/storage/storage.py", + "sha256": "1a93e0aa12beb49bbd81b4979fc5e99d263d8a0882137e6bb831655997600eaa", + "language": "Python", + "lines": 706, + "truncated": false, + "block": 2, + "row": 2174 + }, + { + "path": "cloudvolume/storage/storage_interfaces.py", + "sha256": "45fd72aafbb296ec2b4c943d3c7e1c9bd5b4a1fa317a838bf87a28d50cd3ce01", + "language": "Python", + "lines": 525, + "truncated": false, + "block": 2, + "row": 2136 + }, + { + "path": "cloudvolume/threaded_queue.py", + "sha256": "14a6ea73e4bd7b6c183585febb547c3dd5fac29d31ecaef0101664cd89bd1537", + "language": "Python", + "lines": 255, + "truncated": false, + "block": 2, + "row": 2004 + }, + { + "path": "cloudvolume/types.py", + "sha256": "8211f8fbb6e7aabf0964475de9a5d6075857462c72055092783435e1e69df747", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 2, + "row": 1635 + }, + { + "path": "cloudvolume/volumecutout.py", + "sha256": "df9da3b883f3af47669508170e8cb81f33841428972f58b6c24fcd2013792fd8", + "language": "Python", + "lines": 112, + "truncated": false, + "block": 2, + "row": 1853 + }, + { + "path": "setup.py", + "sha256": "49624692cd607af574d8cfdf815ac9e8e9aa1d8e3df0b9b2538b25c38dd9b685", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 2, + "row": 1872 + }, + { + "path": "setversion.py", + "sha256": "aea4f088f8398db99292c7a0f8364ec3e1bc6e85bdcb82f1fd02580d0339cf65", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 2, + "row": 1714 + }, + { + "path": "test/layer_harness.py", + "sha256": "099406432f789e509a767919df350f5a182d2776a3cafb58c6b69b9bb86ba62b", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 2, + "row": 1772 + }, + { + "path": "test/test_annotations.py", + "sha256": "dca562453f3ab4807b407c0e51bb6e5a8417553a651fc3f77efc8fda35c5c1ed", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 2, + "row": 1694 + }, + { + "path": "test/test_chunks.py", + "sha256": "c5e0ce8c4ca52ec67634078931596434888ae1501ce7ed393249545c8c1a3ea3", + "language": "Python", + "lines": 191, + "truncated": false, + "block": 2, + "row": 1994 + }, + { + "path": "test/test_cloudvolume.py", + "sha256": "5911abb7d4834d07dfefcd752a42ba9dd0a58c1f3f4f2f59936762561b560645", + "language": "Python", + "lines": 2067, + "truncated": false, + "block": 2, + "row": 2240 + }, + { + "path": "test/test_connectionpools.py", + "sha256": "879dc809f99de6cfc6b675cb9dc15dc300267c10b65caff304eda6490840e716", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 2, + "row": 1739 + }, + { + "path": "test/test_dask.py", + "sha256": "0ddaa6f16885a287f5f552b65c30ccb5067d6ed235c2a660ee3aaf028fd04165", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 2, + "row": 1852 + }, + { + "path": "test/test_graphene.py", + "sha256": "12241edea1637687e761021421415812b07e0d63628f107689b5dba0865837cb", + "language": "Python", + "lines": 513, + "truncated": false, + "block": 2, + "row": 2139 + }, + { + "path": "test/test_lib.py", + "sha256": "2df04988675a3d4d3b255aa5a4ebb5a1c1cc9c90a99311871ef7084f3be2b78d", + "language": "Python", + "lines": 321, + "truncated": false, + "block": 2, + "row": 2038 + }, + { + "path": "test/test_lru.py", + "sha256": "3cb988769f00631859b542e2ba59c4b12733ae3e24e9402e9b44118fcd177fe6", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 2, + "row": 1776 + }, + { + "path": "test/test_meshing.py", + "sha256": "c82c13ca7475b4ec80057d7871181f0a74667f7a1fe66ebf1a203027693e428f", + "language": "Python", + "lines": 276, + "truncated": false, + "block": 2, + "row": 2014 + }, + { + "path": "test/test_paths.py", + "sha256": "3179a0a34eb6bbdb7f847b8a755d78987cf7be4c249bec3ea0eec33893b3b8d0", + "language": "Python", + "lines": 161, + "truncated": false, + "block": 2, + "row": 1964 + }, + { + "path": "test/test_precomputed_multilod.py", + "sha256": "7cdcef040e87114ffed9dbd41b33df07d62da6a1b2aa252817e03e594559afc6", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 2, + "row": 1741 + }, + { + "path": "test/test_provenance.py", + "sha256": "cfd2448887dd151e2d15e717ce6d3c971df6fc916533b601959a00015dcee11f", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 2, + "row": 1842 + }, + { + "path": "test/test_sharding.py", + "sha256": "a1355fd6d5ae9ca4d1a911232fb2c163e9410f89c6818324b9adb8e39b11d9a7", + "language": "Python", + "lines": 556, + "truncated": false, + "block": 2, + "row": 2123 + }, + { + "path": "test/test_sharedmemory.py", + "sha256": "73f92fc79fa9580e8b7f52ce2d83b7cda6f8e8dcf2b2773a0b7e70786a275a97", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 2, + "row": 1835 + }, + { + "path": "test/test_skeletons.py", + "sha256": "93f19ce24e40e923e22bed0a96f923a8a69a9877e3e9b6695f7afbf83538583a", + "language": "Python", + "lines": 822, + "truncated": false, + "block": 2, + "row": 2173 + }, + { + "path": "test/test_storage.py", + "sha256": "60d2ad7ba386dbf8dc3edef36587eaeffeeab78dd0762633b01414743c928396", + "language": "Python", + "lines": 291, + "truncated": false, + "block": 2, + "row": 2062 + }, + { + "path": "test/test_threadedqueue.py", + "sha256": "aecace1315bd043f0fc75d612da87905eb5fc99873b50e018a1a246d7ebc2326", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 2, + "row": 1779 + }, + { + "path": "test/test_zarr.py", + "sha256": "011c38d915a8383ae2b152986d3fe7b9ee6995d7f8ad6692f39fdad8b0ee3fc9", + "language": "Python", + "lines": 276, + "truncated": false, + "block": 2, + "row": 2021 + } + ] +} \ No newline at end of file diff --git a/manifests/6f/github.com__xieyangshuying__brainstem-neurons-coordinate-the-bladder-and-urethral-sphincter-for-urination.json b/manifests/6f/github.com__xieyangshuying__brainstem-neurons-coordinate-the-bladder-and-urethral-sphincter-for-urination.json new file mode 100644 index 0000000000000000000000000000000000000000..944699afc396b30a6fcc0f76fd60f55c90241519 --- /dev/null +++ b/manifests/6f/github.com__xieyangshuying__brainstem-neurons-coordinate-the-bladder-and-urethral-sphincter-for-urination.json @@ -0,0 +1,84 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/xieyangshuying/brainstem-neurons-coordinate-the-bladder-and-urethral-sphincter-for-urination", + "url": "https://github.com/xieyangshuying/Brainstem-neurons-coordinate-the-bladder-and-urethral-sphincter-for-urination", + "host": "github.com", + "commit": "afdb51517ddaf7d0a963764edeb43050c3bf44e7", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE.txt", + "redistribution": "yes", + "files": [ + { + "path": "Calcium_EMG_crosscorrelation.m", + "sha256": "30610d861c8fb2dfca3655f0cfbd88b2d1f4dff0caeb56a68113201c210d9b59", + "language": "MATLAB", + "lines": 198, + "truncated": false, + "block": 2, + "row": 1492 + }, + { + "path": "Calcium_peak_detection.m", + "sha256": "899431e5c1c8ceb742b2fd6a5a6febb55859508cf6852853b0117493dc5ec739", + "language": "MATLAB", + "lines": 37, + "truncated": false, + "block": 2, + "row": 1227 + }, + { + "path": "Calcium_pressure_crosscorrelation.m", + "sha256": "63fa8fc5abb32071cf95bc774ac089ebdae8e7bad0542f6e5e3f0b8c93c38f9b", + "language": "MATLAB", + "lines": 76, + "truncated": false, + "block": 2, + "row": 1317 + }, + { + "path": "Extract_pressure_EMG_optogenetic.m", + "sha256": "76fd45ed9c786f5a0784194cfacdab1eb83331e17f80b08915de3d520c62fb51", + "language": "MATLAB", + "lines": 157, + "truncated": false, + "block": 2, + "row": 1491 + }, + { + "path": "LICENSE.txt", + "sha256": "c71d239df91726fc519c6eb72d318ec65820627232b2f796219e87dcf35d0ab4", + "language": "License", + "lines": 201, + "truncated": false, + "block": 1, + "row": 2216 + }, + { + "path": "README.md", + "sha256": "8832d29823f7b0829b3a0306dda9b89a374f267ac8504d684b113a119397fbe5", + "language": "Text", + "lines": 10, + "truncated": false, + "block": 2, + "row": 2601 + }, + { + "path": "envelope.m", + "sha256": "1d1a95d57b9adecad6f26b5d37a6d57eb70844f8723ef9864a26dc30791989ba", + "language": "MATLAB", + "lines": 216, + "truncated": false, + "block": 2, + "row": 1464 + }, + { + "path": "sem.m", + "sha256": "71ffc97a0301857d2a402919e2898f9b32a65f01e564896ee656fea7f9d7ab8c", + "language": "MATLAB", + "lines": 3, + "truncated": false, + "block": 2, + "row": 1159 + } + ] +} \ No newline at end of file diff --git a/manifests/6f/zenodo__10779514.json b/manifests/6f/zenodo__10779514.json new file mode 100644 index 0000000000000000000000000000000000000000..b60d23742f1032a29866639dee11e2b5781df71d --- /dev/null +++ b/manifests/6f/zenodo__10779514.json @@ -0,0 +1,21 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:10779514", + "url": "https://doi.org/10.5281/zenodo.10779514", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "e575bfa6fdc1c1a472b0acd9ecedec17cec8c614e6c9a645399b0ee8e51b6c91", + "language": "Text", + "lines": 2, + "truncated": false, + "block": 1, + "row": 11761 + } + ] +} \ No newline at end of file diff --git a/manifests/70/zenodo__21294908.json b/manifests/70/zenodo__21294908.json new file mode 100644 index 0000000000000000000000000000000000000000..44af23d4a5c7df256c4e501c5d8c356d27ccd8d3 --- /dev/null +++ b/manifests/70/zenodo__21294908.json @@ -0,0 +1,201 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:21294908", + "url": "https://doi.org/10.5281/zenodo.21294908", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "a7371a6635d134c9e315b934d36a064d56a30f6244190585df815c7f954740b0", + "language": "Text", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11781 + }, + { + "path": "data/load_data.py", + "sha256": "7dbd2a77620e467d643dad27ff8d8df55d0b3d058bbe9a226c9d5f0793d8329d", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 1, + "row": 6298 + }, + { + "path": "figures/comparison.py", + "sha256": "5141356a858b54a64b0f05d53978f4d52b924012e6c0778910194de2efa603e4", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 1, + "row": 7126 + }, + { + "path": "figures/effects.py", + "sha256": "d3f54cd1225aba8779d49066ae86557ecac162311efe2baa0ce4663990d68636", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 1, + "row": 6363 + }, + { + "path": "figures/method_distribution.py", + "sha256": "5d9d92af52b8f496d8cdda21ae00d985a131e64fa16e9c9b99c0bc0d5cf635bb", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 1, + "row": 6110 + }, + { + "path": "figures/overview.py", + "sha256": "0b5ecfc6841c91253d5791a98907f201c127c7b5408faae5b3060551cff584d8", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 1, + "row": 7036 + }, + { + "path": "figures/run_figures.py", + "sha256": "dd04aa7f0792387de7acd0efc9eb454e489f8b69419b6927bc79a1848420abcc", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 1, + "row": 6077 + }, + { + "path": "modeling/config.py", + "sha256": "83336d797119dff97969e596d5a584901bf0f999192d88c6d66caf7d2985660d", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 1, + "row": 5517 + }, + { + "path": "modeling/data.py", + "sha256": "5450a897c04b1f7648f3b2943f6ee6ac2fa28a948193d1fbb7999e303bbc8b47", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 1, + "row": 5664 + }, + { + "path": "modeling/evaluation.py", + "sha256": "cfcdc3195b5236d970123472ddd3d363850c534f58b433439343d3bb4ade9779", + "language": "Python", + "lines": 159, + "truncated": false, + "block": 1, + "row": 7479 + }, + { + "path": "modeling/models.py", + "sha256": "11bf9c643954ce8f650329cd325df52069e2c0e8783988deab38858a86fdcf67", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 1, + "row": 7194 + }, + { + "path": "modeling/results.py", + "sha256": "f7767479f1a22647c29c3be90a034e00f991e2cd42d7c27a64ce2cd4c98c8554", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 1, + "row": 5276 + }, + { + "path": "modeling/run_modeling.py", + "sha256": "4e4f8e84286e9b5ab36755b92b388120ec3df09388661396febd0625b4ddcfb6", + "language": "Python", + "lines": 235, + "truncated": false, + "block": 1, + "row": 7902 + }, + { + "path": "modeling/selection.py", + "sha256": "010585043db67aa1faf8428ef25ab5d968274ee15f5c7d5bd831b3bd43be879e", + "language": "Python", + "lines": 125, + "truncated": false, + "block": 1, + "row": 6822 + }, + { + "path": "support/cate_support.py", + "sha256": "6b531c77a1b3b1e86c9c2a3c9c633121aa8c76b1039a0081a6a88cc9c16095e1", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 1, + "row": 7199 + }, + { + "path": "support/category_standardization.py", + "sha256": "d026bc3b44a803d26d6b494a23ec4c15d57ea4c8725e9614a3ae474466831fc3", + "language": "Python", + "lines": 303, + "truncated": false, + "block": 1, + "row": 8073 + }, + { + "path": "support/cleaned_dataset.py", + "sha256": "f3caddb25f52fa275ba7136899336daf80dfa63cc16417e343c8f9a488c6cdb5", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 1, + "row": 5547 + }, + { + "path": "support/config.py", + "sha256": "5bd3196989605380d53bed8ddbca69fef330de2d3d631c27b626ae0290bb4bbe", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 1, + "row": 5561 + }, + { + "path": "support/data_support.py", + "sha256": "52b87b819cf6b65944b6873e97fc7b67537e802a7e6fbe32e38b047c36eb4552", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 1, + "row": 7112 + }, + { + "path": "support/method_distribution.py", + "sha256": "f7dddbe0360faa01ceb81e8a47ec1c21e6569da6492f0a2dffd53565c0c3f393", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 1, + "row": 6526 + }, + { + "path": "support/plot_helpers.py", + "sha256": "b6f94e52f857de893df1f83dab2bb363b63f932b85e48e850d98b5a42be8b522", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 1, + "row": 5847 + } + ] +} \ No newline at end of file diff --git a/manifests/71/figshare__31976259.json b/manifests/71/figshare__31976259.json new file mode 100644 index 0000000000000000000000000000000000000000..d1772a7be389add0751a48e8a883e686fec3f431 --- /dev/null +++ b/manifests/71/figshare__31976259.json @@ -0,0 +1,345 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "figshare:31976259", + "url": "https://doi.org/10.6084/m9.figshare.31976259", + "host": "figshare.com", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "cba96364d5d80de5ac210f63c49094187508ecd3bd7106f0d2707c3d9c468ce6", + "language": "Text", + "lines": 83, + "truncated": false, + "block": 1, + "row": 11844 + }, + { + "path": "core_method/BBKNN.py", + "sha256": "eb1728b65b24c4580ab682d624eadbd55433fb8a3399ac8648dfca54e191d6f2", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 1, + "row": 6393 + }, + { + "path": "core_method/CCA.R", + "sha256": "6f7984fb1188242cafc4e33c73acb7b2bc53c8d2045d26ab12a06d1ef2e1304c", + "language": "R", + "lines": 75, + "truncated": false, + "block": 1, + "row": 10067 + }, + { + "path": "core_method/ComBat.R", + "sha256": "7c83a936595bd156112cabe14f2c42d27bd64409f3ace5e7679d4b04472159a6", + "language": "R", + "lines": 143, + "truncated": false, + "block": 1, + "row": 10204 + }, + { + "path": "core_method/Conos.R", + "sha256": "c5e2e458a21638efd973515ca58891a55f5934dc643581f1e67829c11dc72913", + "language": "R", + "lines": 126, + "truncated": false, + "block": 1, + "row": 10183 + }, + { + "path": "core_method/FastMNN.R", + "sha256": "9b2ea70349f2a2fc13c2c6fff90420cdc08ff9acccd9dac5df4726d3b18a3d4d", + "language": "R", + "lines": 76, + "truncated": false, + "block": 1, + "row": 10066 + }, + { + "path": "core_method/Harmony.R", + "sha256": "7a1ab5ed70a92cefca8f57cc6b075888ee508735bb415eac70655279a16e4949", + "language": "R", + "lines": 75, + "truncated": false, + "block": 1, + "row": 10070 + }, + { + "path": "core_method/JointPCA.R", + "sha256": "128e0169990623d5e142d5612e80434d6981c3e185d938cc8713777e66970d82", + "language": "R", + "lines": 73, + "truncated": false, + "block": 1, + "row": 10068 + }, + { + "path": "core_method/RPCA.R", + "sha256": "95bd752808e9f631e6cc21f3711a8d3de258fa5a582631e99cb5e8879a8cc493", + "language": "R", + "lines": 78, + "truncated": false, + "block": 1, + "row": 10063 + }, + { + "path": "core_method/R_for_all_tasks.R", + "sha256": "ab499fe9ade7b64d91dd0e1ac6a1e7da3fbf6ddad4ec41953128c82ad9bf8a20", + "language": "R", + "lines": 123, + "truncated": false, + "block": 1, + "row": 10210 + }, + { + "path": "core_method/Scanorama.py", + "sha256": "e38439f847c064be701469d31df6cbf55888453633b3ddb2297bb0f6535ba669", + "language": "Python", + "lines": 117, + "truncated": false, + "block": 1, + "row": 6558 + }, + { + "path": "core_method/python_for_all_tasks.py", + "sha256": "fae0584222c9ba8cc5800fc1c224775daa6ae6edb2f96a8d8aeda630db201312", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 1, + "row": 6411 + }, + { + "path": "core_method/scANVI.py", + "sha256": "3abdf27559d9345550ad014c0432b185f2cd1b71374e99d9f94c2cf69850a7bc", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 1, + "row": 5794 + }, + { + "path": "core_method/scVI.py", + "sha256": "4ef5c0e7a01a241731b3dd71efbc6aad7ebab554555a9cfa3f883bf3b4d9b5a0", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 1, + "row": 5784 + }, + { + "path": "evaluation/ARI_LISI/ARI_LISIH5.R", + "sha256": "e5e1f20bc8568207571cc0266d0e3a9d9b074d4ae828fb6b84f54f54ed50a6e6", + "language": "R", + "lines": 39, + "truncated": false, + "block": 1, + "row": 9987 + }, + { + "path": "evaluation/ARI_LISI/ARI_LISIH5pre.py", + "sha256": "8abfb15ea614e0cb6846c06317a8f762e8ce49a3bcd9462e36b727da1f7a2132", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 1, + "row": 6190 + }, + { + "path": "evaluation/ARI_LISI/ARI_LISI_rds.R", + "sha256": "2ac2a9d2e885574424b09e1b0903afbb817e1bac30eb4134b9993e2dc5c5538a", + "language": "R", + "lines": 122, + "truncated": false, + "block": 1, + "row": 10191 + }, + { + "path": "evaluation/ARI_LISI/evaluation_ARI_LISI_R_F.R", + "sha256": "87a58aa74eeb4e91f6e60282bf52b80eb3d5741077f02c9ff5b8c2b9dc18036a", + "language": "R", + "lines": 277, + "truncated": false, + "block": 1, + "row": 10428 + }, + { + "path": "evaluation/ARI_LISI/evaluation_ARI_LISI_py_F.R", + "sha256": "44a5109b996ddcfcb6569a5ec37878e5c9d861b5ffc4320c54a9a419f9456a46", + "language": "R", + "lines": 226, + "truncated": false, + "block": 1, + "row": 10378 + }, + { + "path": "evaluation/ARI_LISI/evaluation_LISI_knn.py", + "sha256": "e0bdeba16f0b187aab3d1417618e3cd3e3de8c1d9732d843fa46bf815489488c", + "language": "Python", + "lines": 193, + "truncated": false, + "block": 1, + "row": 7734 + }, + { + "path": "evaluation/ARI_LISI/samap_ARI.R", + "sha256": "237e08146a5b8666659c471750b61a5cb1094d4f2db38b0f27f4fd4a262799ec", + "language": "R", + "lines": 96, + "truncated": false, + "block": 1, + "row": 10128 + }, + { + "path": "evaluation/ARI_LISI/samap_ARIpre.py", + "sha256": "d0e9a8287ee30f8d193d2cdd749de446332a5fd19be6b05c0c429acc343681eb", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 1, + "row": 6146 + }, + { + "path": "evaluation/ARI_LISI/samap_LISI.py", + "sha256": "2840c396ea2f2b999a573eeeae6b92ea93c0fd65618d25ea565ceea912114765", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 1, + "row": 5816 + }, + { + "path": "evaluation/ARI_LISI/samap_LISIpre.py", + "sha256": "d93a379ceac94ba6e90c221c34ebedd7c896ef354a994cf83a46f57925100560", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 1, + "row": 5767 + }, + { + "path": "evaluation/ASW_NMI/ASW_NMI02.py", + "sha256": "142f8f65909b3ff31b422e0849d1e0f23c3095cd33063b65f11a1ff82d12b652", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 1, + "row": 6150 + }, + { + "path": "evaluation/ASW_NMI/evaluation_ASW_NMI.py", + "sha256": "aa72a2576cad8033d114a0a5b187f796a88ebb19c64dfb68bbf1c9e3a3ad6d42", + "language": "Python", + "lines": 294, + "truncated": false, + "block": 1, + "row": 8595 + }, + { + "path": "evaluation/ASW_NMI/samap_ASW_NMI.py", + "sha256": "e29d511bf1fe556f7be9a124613204316c83e4a9d460f5b3c83d0c594560dabc", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 1, + "row": 7561 + }, + { + "path": "evaluation/ASW_NMI/samap_NMIpre.py", + "sha256": "404b3dfc783f9410acec36a0c22c06efb2e4b65c28a803addc1f8aa04e726704", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 1, + "row": 5766 + }, + { + "path": "evaluation/scib/H5_evaluation.py", + "sha256": "df0a776f81904b8b87d7635a1082d71bdeac2619c2a4cd2c7b6251aed886f539", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 1, + "row": 7131 + }, + { + "path": "evaluation/scib/export_all_embeddings.R", + "sha256": "4f608acc584019ec70f69b541116741fc2970761356c5ef0d63582fd30ba78bf", + "language": "R", + "lines": 73, + "truncated": false, + "block": 1, + "row": 10097 + }, + { + "path": "evaluation/scib/samap_scibmetric.py", + "sha256": "cb85c9b59b77867340baf91af434fe26761eaa224be31364ada6718bea41bb36", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 1, + "row": 6159 + }, + { + "path": "evaluation/scib/saturn_evaluation.py", + "sha256": "929837e7d68155576bb79aa21c7e910f78915fb9dc3c3901049d7a46bc888d2f", + "language": "Python", + "lines": 125, + "truncated": false, + "block": 1, + "row": 7211 + }, + { + "path": "evaluation/scib/scib_ccevaluation.py", + "sha256": "53385c846444811718b7d41e063f128a2aabec3c68fede61b268f4ed76b2a8b2", + "language": "Python", + "lines": 166, + "truncated": false, + "block": 1, + "row": 7723 + }, + { + "path": "evaluation/scib/scib_evaluation.py", + "sha256": "3ff43c0c218f80eced889dc7181164e2652011ed8e40b2b55539897dda511f36", + "language": "Python", + "lines": 146, + "truncated": false, + "block": 1, + "row": 7350 + }, + { + "path": "model/Scripts/knn.py", + "sha256": "e6186415913c94c7316d77ab03d1dc75c023afe0bff6de2a60d107faaab4ed76", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 1, + "row": 5984 + }, + { + "path": "model/Scripts/predict_overall_score.py", + "sha256": "913e68ff278e4f087d93af96707cdbc7e3689f904d3d7709e8c6178080ab3796", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 1, + "row": 6515 + }, + { + "path": "model/Scripts/test_prediction.py", + "sha256": "26a672d4db5bdab8c98e2622e3a859cb18462a81dba49c5bb5a0cb7aede81e40", + "language": "Python", + "lines": 146, + "truncated": false, + "block": 1, + "row": 6890 + } + ] +} \ No newline at end of file diff --git a/manifests/71/zenodo__17901990.json b/manifests/71/zenodo__17901990.json new file mode 100644 index 0000000000000000000000000000000000000000..1e6b65b00567d0ecba475003930f4144f6be40ca --- /dev/null +++ b/manifests/71/zenodo__17901990.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:17901990", + "url": "10.5281/zenodo.17901990", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "e3d38faeb84202999e91c22c05ff96b5e652fec979177b880b3955aabad1a617", + "language": "License", + "lines": 40, + "truncated": false, + "block": 1, + "row": 2205 + }, + { + "path": "README.md", + "sha256": "e2588e2d6d8975758ecef8f6e4c6926bbbf3ebe1281f0366d6c4072d8ede289c", + "language": "Text", + "lines": 299, + "truncated": false, + "block": 1, + "row": 11974 + }, + { + "path": "src/MorphoScope.py", + "sha256": "58737e457e9a187d195c63f8e434a4c8db38c4e9ca6c650275ed5909f862a80e", + "language": "Python", + "lines": 2304, + "truncated": false, + "block": 1, + "row": 9853 + }, + { + "path": "src/config.py", + "sha256": "18d9393d631bab8a152b3999a401d18deda6146cc824ede47d4a6bc7f5c39a8e", + "language": "Python", + "lines": 332, + "truncated": false, + "block": 1, + "row": 8711 + }, + { + "path": "src/image_processor.py", + "sha256": "6c3b61fb0d5e9e4a8cd3986e587cbedc4514de45ea087c66919f7e12b0465adb", + "language": "Python", + "lines": 770, + "truncated": false, + "block": 1, + "row": 9611 + } + ] +} \ No newline at end of file diff --git a/manifests/71/zenodo__18251638.json b/manifests/71/zenodo__18251638.json new file mode 100644 index 0000000000000000000000000000000000000000..456a9ca7b478bbb48d6b7ad615f3a89b10de8ac4 --- /dev/null +++ b/manifests/71/zenodo__18251638.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18251638", + "url": "https://zenodo.org/records/18251638", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "1f2422fa51ed4f7f8ae511d8c54e65c4bed15522166f3bedd23c36983e1a29e7", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2172 + }, + { + "path": "README.md", + "sha256": "7f145b15811926cf78d67d1a4fb169f7384812b74e6f61fefecfc0a0b7d8f83b", + "language": "Text", + "lines": 195, + "truncated": false, + "block": 1, + "row": 11922 + } + ] +} \ No newline at end of file diff --git a/manifests/72/github.com__frantassara__morphoscope.json b/manifests/72/github.com__frantassara__morphoscope.json new file mode 100644 index 0000000000000000000000000000000000000000..f19e9c1853f2fc9b597ccb28d88db1bcdbed8288 --- /dev/null +++ b/manifests/72/github.com__frantassara__morphoscope.json @@ -0,0 +1,66 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/frantassara/morphoscope", + "url": "https://github.com/FranTassara/MorphoScope", + "host": "github.com", + "commit": "6cb847ba76bdaeab3d8ba2b247e8ce269cde485c", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3d1334f2a1e64fbce81aec964732cea9a30eb15d90a594f08f43732b4b743589", + "language": "License", + "lines": 40, + "truncated": false, + "block": 1, + "row": 2204 + }, + { + "path": "README.md", + "sha256": "1b7eb9156f8dfaa2dfae7dacea97fc7390ead716481f0f396d546d78cdeba56a", + "language": "Text", + "lines": 306, + "truncated": false, + "block": 1, + "row": 11977 + }, + { + "path": "src/MorphoScope.py", + "sha256": "58737e457e9a187d195c63f8e434a4c8db38c4e9ca6c650275ed5909f862a80e", + "language": "Python", + "lines": 2304, + "truncated": false, + "block": 1, + "row": 9853 + }, + { + "path": "src/config.py", + "sha256": "4b42a617632fad5f9f703c74da55c74dd506c7452e1cae377f767b84c7a52c28", + "language": "Python", + "lines": 334, + "truncated": false, + "block": 1, + "row": 8728 + }, + { + "path": "src/image_processor.py", + "sha256": "6c3b61fb0d5e9e4a8cd3986e587cbedc4514de45ea087c66919f7e12b0465adb", + "language": "Python", + "lines": 770, + "truncated": false, + "block": 1, + "row": 9611 + }, + { + "path": "validation/synthetic_volumes_generator.py", + "sha256": "7ef8908fa4464a9fee6124ad8384244990187f1d49bbda9d75365c648ec65d3c", + "language": "Python", + "lines": 734, + "truncated": false, + "block": 1, + "row": 9499 + } + ] +} \ No newline at end of file diff --git a/manifests/72/zenodo__18712400.json b/manifests/72/zenodo__18712400.json new file mode 100644 index 0000000000000000000000000000000000000000..92667c7a9e46f517f2c2fbc14d1b188ede48637b --- /dev/null +++ b/manifests/72/zenodo__18712400.json @@ -0,0 +1,273 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18712400", + "url": "https://doi.org/10.5281/zenodo.18712400", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Figure_script.R", + "sha256": "68e6e4bc135379b481bf44291c6ac4359245413a9c1af6fc02024fc7177789e5", + "language": "R", + "lines": 2643, + "truncated": false, + "block": 2, + "row": 2381 + }, + { + "path": "LICENSE", + "sha256": "03c521785634fed3c383f4220bc08c0c068de6d9a716cb82ff4b0e96a0c47f6d", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1134 + }, + { + "path": "README.md", + "sha256": "01b521c8dafbaf8dfb8e1581fd56313b1fcf6068200871d973533115e5ba2e84", + "language": "Text", + "lines": 46, + "truncated": false, + "block": 2, + "row": 2629 + }, + { + "path": "snRNA/1-Individual_preprocessing.R", + "sha256": "c610e98254f0a9b08692b2615c73d6afa9dbe36ceb7db1807b0a25c7af8a4c6b", + "language": "R", + "lines": 93, + "truncated": false, + "block": 2, + "row": 2275 + }, + { + "path": "snRNA/2-Merge_objects.R", + "sha256": "17d9f416aee1aac384b3c3eb39bdde0eeac02c9772edec92d34c9d2861425a5a", + "language": "R", + "lines": 69, + "truncated": false, + "block": 2, + "row": 2271 + }, + { + "path": "snRNA/3-TME_annotation.R", + "sha256": "940827c80c5724eb5ef784591e374d7034912b84473bbc237bc0abcd19f12d02", + "language": "R", + "lines": 258, + "truncated": false, + "block": 2, + "row": 2337 + }, + { + "path": "snRNA/4-Run_NMF.R", + "sha256": "d7922a31b56f73a55ae411de33963d738185f338c16292df77137ec95946c378", + "language": "R", + "lines": 95, + "truncated": false, + "block": 2, + "row": 2277 + }, + { + "path": "snRNA/5-Metaprograms.R", + "sha256": "975eb2ae121b4e591c72349ac17bce8115b6e4668ecd2227be4cbccd7d3301d4", + "language": "R", + "lines": 290, + "truncated": false, + "block": 2, + "row": 2350 + }, + { + "path": "snRNA/6-Metaprogram_assignment.R", + "sha256": "42303fe2c2d0f6d11541fbc932fd04d3d2f2d098a1db7c534cf32daf459c17d5", + "language": "R", + "lines": 154, + "truncated": false, + "block": 2, + "row": 2325 + }, + { + "path": "snRNA/7-DEGs_memento.ipynb", + "sha256": "946237412c0c25a6bee8468ccc43e7a9951e6aa0b6ea705fb85e4f7ec746edcc", + "language": "Jupyter", + "lines": 55, + "truncated": false, + "block": 2, + "row": 1008 + }, + { + "path": "snRNA/8-GSEA_DEGs.R", + "sha256": "44ed5ff450af6175098e04223b8871e073666210058a68512ca8c732cd516643", + "language": "R", + "lines": 46, + "truncated": false, + "block": 2, + "row": 2266 + }, + { + "path": "snRNA/9-CellChat.R", + "sha256": "31bdb8e79fce888210e18e1c332ca298ca55f2cf0cb35dc52d8bfc409139c448", + "language": "R", + "lines": 163, + "truncated": false, + "block": 2, + "row": 2323 + }, + { + "path": "visiumHD/1-Segmentation.ipynb", + "sha256": "515fa3b9c426b4ab189535da33aa79b8336b2d56734d0121380193338431a047", + "language": "Jupyter", + "lines": 181, + "truncated": false, + "block": 2, + "row": 1050 + }, + { + "path": "visiumHD/2-OT_mapping.ipynb", + "sha256": "6f9776bd3d305d8a0bf72c7b14c0e74377a1db03d293ed5d80054a6319c086cc", + "language": "Jupyter", + "lines": 266, + "truncated": false, + "block": 2, + "row": 1066 + }, + { + "path": "visiumHD/3-Infiltration.ipynb", + "sha256": "1461db2e469e917e87e86e27815ea8ca1f68dd0c635ce77a39924c7cf012e71e", + "language": "Jupyter", + "lines": 534, + "truncated": false, + "block": 2, + "row": 1098 + }, + { + "path": "visiumHD/4-TSPS_correlations.ipynb", + "sha256": "28d2ee4c83dc11cef8b8ba89f7dbec4eb8fc4f73edc23b991f635bf1903b7820", + "language": "Jupyter", + "lines": 291, + "truncated": false, + "block": 2, + "row": 1074 + }, + { + "path": "visiumHD/5-TSPS.ipynb", + "sha256": "84ffcea13ad4feee80f28702910772eafc8d936d0828ff9cf1bf7f13e71fad61", + "language": "Jupyter", + "lines": 262, + "truncated": false, + "block": 2, + "row": 1062 + }, + { + "path": "visiumHD/6-Spatial_Intereactions.ipynb", + "sha256": "7c7083360aecbc205bdba17932395b84d08321f46f19e99eaed321a7c55000a4", + "language": "Jupyter", + "lines": 173, + "truncated": false, + "block": 2, + "row": 1048 + }, + { + "path": "visiumHD/Annotations/2-AnnotateP13W0.ipynb", + "sha256": "848846fefe0e6ddeef265244628bbb577483b02d994c5977790cda1aa66eceb4", + "language": "Jupyter", + "lines": 114, + "truncated": false, + "block": 2, + "row": 1014 + }, + { + "path": "visiumHD/Annotations/2-AnnotateP13W12.ipynb", + "sha256": "fe93106b9e82acaefcdc210865913813eb4bf6750770b771ebc11c96a99d0a24", + "language": "Jupyter", + "lines": 112, + "truncated": false, + "block": 2, + "row": 1015 + }, + { + "path": "visiumHD/Annotations/2-AnnotateP13W4.ipynb", + "sha256": "7cba6f29549732cd80e054393792aa6ca4a3f700016032111a4ad3e3a5b312c4", + "language": "Jupyter", + "lines": 123, + "truncated": false, + "block": 2, + "row": 1018 + }, + { + "path": "visiumHD/Annotations/2-AnnotateP2W12.ipynb", + "sha256": "a5454023be51c866bd3263c0b5c57c98d4414e1cfbc82a7cd6851b69607679d8", + "language": "Jupyter", + "lines": 123, + "truncated": false, + "block": 2, + "row": 1017 + }, + { + "path": "visiumHD/Annotations/2-AnnotateP2W4.ipynb", + "sha256": "edf0b63271d68ba9611ad77f670ba3942ea82bb68f5794f85b11df05c7668d55", + "language": "Jupyter", + "lines": 123, + "truncated": false, + "block": 2, + "row": 1016 + }, + { + "path": "visiumHD/Annotations/2-AnnotateP3W0.ipynb", + "sha256": "e06255f2a067f90fef67f1e2923a7e5421c0b6b887e0892d39324b9bd812bb8a", + "language": "Jupyter", + "lines": 195, + "truncated": false, + "block": 2, + "row": 1044 + }, + { + "path": "visiumHD/Annotations/2-AnnotateP3W4.ipynb", + "sha256": "e79fc53f9722c4d50d51354a82752c23f01a336e823ca7dc5d52fb24377da11b", + "language": "Jupyter", + "lines": 143, + "truncated": false, + "block": 2, + "row": 1027 + }, + { + "path": "visiumHD/Annotations/2-AnnotateP6W0.ipynb", + "sha256": "5ed098d03e00c01eee9ad15a5bba89079d40cd0d77cd1e1df7c257ed0cf1cba6", + "language": "Jupyter", + "lines": 145, + "truncated": false, + "block": 2, + "row": 1028 + }, + { + "path": "visiumHD/Annotations/2-AnnotateP6W4.ipynb", + "sha256": "c7382b2136cdd1e6f9be48c98519086c28ecf4e769b99be244355e5794e38275", + "language": "Jupyter", + "lines": 139, + "truncated": false, + "block": 2, + "row": 1025 + }, + { + "path": "visiumHD/Xenium_Pozniak/1-xeniumData.ipynb", + "sha256": "10efc96c785d9563e2bf02c408e7ba7a857fd5b82edb7f62ee5b471b3df0494b", + "language": "Jupyter", + "lines": 310, + "truncated": false, + "block": 2, + "row": 1064 + }, + { + "path": "visiumHD/Xenium_Pozniak/2-OT.ipynb", + "sha256": "be2a20a7f42a5b93f60217ea8fcd31e96032b1fb68469ee2d682d2c553c69c07", + "language": "Jupyter", + "lines": 158, + "truncated": false, + "block": 2, + "row": 1029 + } + ] +} \ No newline at end of file diff --git a/manifests/73/github.com__francescovaccari__neuraldataanalysis_matlab.json b/manifests/73/github.com__francescovaccari__neuraldataanalysis_matlab.json new file mode 100644 index 0000000000000000000000000000000000000000..6fc1e338e865a35ece2d2f16f81e3ff02d4ef151 --- /dev/null +++ b/manifests/73/github.com__francescovaccari__neuraldataanalysis_matlab.json @@ -0,0 +1,264 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/francescovaccari/neuraldataanalysis_matlab", + "url": "https://github.com/francescovaccari/NeuralDataAnalysis_MATLAB", + "host": "github.com", + "commit": "e8bd6f9a1c65893578e2186f9c793cf9e25a45dc", + "license": "BSD-3-Clause", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "@Experiment/Experiment.m", + "sha256": "b6978e40387b593c6a4d29c4412b02488e57f3acbede940c31051b186d6ebf5d", + "language": "MATLAB", + "lines": 1295, + "truncated": false, + "block": 1, + "row": 4336 + }, + { + "path": "@RecordedData/RecordedData.m", + "sha256": "838212e438dadf9ba984bd50472885a61486eabc33a7957770c9e852078cabdf", + "language": "MATLAB", + "lines": 187, + "truncated": false, + "block": 1, + "row": 3983 + }, + { + "path": "@RecordedData/addVariable2Tensor.m", + "sha256": "427e18da7ea9da3efb355160706886df23488f7f84dfa6ecf8da8b35d978f935", + "language": "MATLAB", + "lines": 702, + "truncated": false, + "block": 1, + "row": 4296 + }, + { + "path": "@RecordedData/computeAnovaOnCond.m", + "sha256": "d4f63a786852dc3835b9b20673621f7bcb97156e82b5d6a61fdd47e9213de513", + "language": "MATLAB", + "lines": 208, + "truncated": false, + "block": 1, + "row": 3951 + }, + { + "path": "@RecordedData/computeAnovaOnParam.m", + "sha256": "6931d5391f3052a334d0cef3ac37b74ac73af32fa1c17d8824c19ae9dfe73f9b", + "language": "MATLAB", + "lines": 307, + "truncated": false, + "block": 1, + "row": 4120 + }, + { + "path": "@RecordedData/computedPCA.m", + "sha256": "bc1b82362bedbd3db1f69cdda1178ab2a8b843c604b2ce6bb3b2e75a49a04819", + "language": "MATLAB", + "lines": 388, + "truncated": false, + "block": 1, + "row": 4220 + }, + { + "path": "@RecordedData/loadData.m", + "sha256": "fa17d4ec7ad6fc22e80b7e92ed8d8e60bdab020e0271086a748124b0af162485", + "language": "MATLAB", + "lines": 80, + "truncated": false, + "block": 1, + "row": 3356 + }, + { + "path": "@RecordedData/makeCSMS.m", + "sha256": "c48b987db69bd5b353078bdc46fb492aab01cf2c98741a4c9c2dd7c0daf98765", + "language": "MATLAB", + "lines": 209, + "truncated": false, + "block": 1, + "row": 3960 + }, + { + "path": "@RecordedData/mergeConditionsCSMS.m", + "sha256": "4e2f0c48b67e63a07c8b4d4581bff8e1866688c4522b2825e2affea1a1b46579", + "language": "MATLAB", + "lines": 176, + "truncated": false, + "block": 1, + "row": 3800 + }, + { + "path": "@RecordedData/neuralDecodingClassification.m", + "sha256": "5da3320ed967d0ddffcd9d5ae53f17a3e9985323bd927f603689854ad8689f98", + "language": "MATLAB", + "lines": 671, + "truncated": false, + "block": 1, + "row": 4299 + }, + { + "path": "@RecordedData/plotPSTH.m", + "sha256": "2f8d9f37cf0e6765b8ac5be802321c9680b0a474f6e351f0bdb3b2a0c456745b", + "language": "MATLAB", + "lines": 375, + "truncated": false, + "block": 1, + "row": 4180 + }, + { + "path": "@RecordedData/plotSDF.m", + "sha256": "1ff4da97f700c6f0d367fa47e565a8d791f479d6783933c2d30839dc0a8e36cb", + "language": "MATLAB", + "lines": 166, + "truncated": false, + "block": 1, + "row": 3861 + }, + { + "path": "@RecordedData/prepareTensorWithFixBin.m", + "sha256": "19341ebc6bf19336cccc101acb9587938eb4e868a5ec252b930650908afd4e5c", + "language": "MATLAB", + "lines": 122, + "truncated": false, + "block": 1, + "row": 3777 + }, + { + "path": "@RecordedData/prepareTensorWithVariableBin.m", + "sha256": "4c0f0e9523ba84af9cab70a1ac732d6683867fe100ef02763a98884a828a716f", + "language": "MATLAB", + "lines": 135, + "truncated": false, + "block": 1, + "row": 3791 + }, + { + "path": "@RecordedData/refineNeuralData.m", + "sha256": "1938b3876733be7c26624c33ba6c3f60f5aa01753727b4591b4839b508237804", + "language": "MATLAB", + "lines": 303, + "truncated": false, + "block": 1, + "row": 4122 + }, + { + "path": "@RecordedData/splitTensorWithParams.m", + "sha256": "78554a1277d7c352ff4effb2ccb7a4ea4d8699716f871784f91cd204f0d162d7", + "language": "MATLAB", + "lines": 153, + "truncated": false, + "block": 1, + "row": 3808 + }, + { + "path": "A_prepareCSMS.m", + "sha256": "5537e58e70fcb28a36cdd1ee2dfd5ed9d1f0404defa9e09029dba54b05290a3f", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 1, + "row": 2726 + }, + { + "path": "B_analyzeObstacle.m", + "sha256": "767dfc9bf2e2ba961221c551c2758d9574f116d755dc2050dc687086a9f07b71", + "language": "MATLAB", + "lines": 287, + "truncated": false, + "block": 1, + "row": 4191 + }, + { + "path": "LICENSE", + "sha256": "5f878034c02c89591bc071715a8493b1b7aef4772ef57f77a3d9d3029056b088", + "language": "License", + "lines": 28, + "truncated": false, + "block": 1, + "row": 2195 + }, + { + "path": "Miscellaneous functions/analyzeGazeData.m", + "sha256": "99591c5cf88542ac574b32ef5d09dc71bd39adbdc8489c95d0ddf430e0261fa6", + "language": "MATLAB", + "lines": 172, + "truncated": false, + "block": 1, + "row": 3814 + }, + { + "path": "Miscellaneous functions/computeDAMindex.m", + "sha256": "7c2c67df505f5ee5c1055dd829a6494262e72521789122292312d0e69da8e51c", + "language": "MATLAB", + "lines": 106, + "truncated": false, + "block": 1, + "row": 3519 + }, + { + "path": "Miscellaneous functions/computeMatchedFanoFactor.m", + "sha256": "0c9df917f27bddc4afd49d79f69c22e4fe15483c16e4c257df04daea8339ffb9", + "language": "MATLAB", + "lines": 87, + "truncated": false, + "block": 1, + "row": 3435 + }, + { + "path": "Miscellaneous functions/computePI.m", + "sha256": "137273e60579bebd7cc12a35b0c68c6fe37d1c2a600b679687f3b2cc7d49ef11", + "language": "MATLAB", + "lines": 67, + "truncated": false, + "block": 1, + "row": 3177 + }, + { + "path": "Miscellaneous functions/computedPI.m", + "sha256": "61f936e4574543de26ac723554dd18560a78676205d2116ae9e4e4add7dc91d3", + "language": "MATLAB", + "lines": 66, + "truncated": false, + "block": 1, + "row": 3169 + }, + { + "path": "Miscellaneous functions/matchDistributions.m", + "sha256": "3f0d5eeedb562706b71927b10be36aa67bfe48cee60eeb16df76a4d17a8d60ea", + "language": "MATLAB", + "lines": 159, + "truncated": false, + "block": 1, + "row": 3840 + }, + { + "path": "Miscellaneous functions/shaded_areas.m", + "sha256": "3b1bc18cf8fc23c0a1cb1694bb228fbf5b03eb05d011b2ec1e02a3f0a6e7e13b", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 1, + "row": 3203 + }, + { + "path": "Miscellaneous functions/vectorCorrelation.m", + "sha256": "58e39043ade7d2ec01b0279e075cce30f099ab49ba3fb3230774f702a3844c04", + "language": "MATLAB", + "lines": 177, + "truncated": false, + "block": 1, + "row": 3842 + }, + { + "path": "README.md", + "sha256": "2da12ef76f5391555c036b76fadda99b51c32b94de5b6a4a3bb3200498d32233", + "language": "Text", + "lines": 62, + "truncated": false, + "block": 1, + "row": 11865 + } + ] +} \ No newline at end of file diff --git a/manifests/73/github.com__navis-org__navis.json b/manifests/73/github.com__navis-org__navis.json new file mode 100644 index 0000000000000000000000000000000000000000..8707903781aaa2aa35785b022a889daad716a687 --- /dev/null +++ b/manifests/73/github.com__navis-org__navis.json @@ -0,0 +1,2694 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/navis-org/navis", + "url": "https://github.com/navis-org/navis", + "host": "github.com", + "commit": "cb9a5915b6b3587cb81154f4f77ffc62fe12b03a", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "589ed823e9a84c56feb95ac58e7cf384626b9cbf4fda2a907bc36e103de1bad2", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2232 + }, + { + "path": "README.md", + "sha256": "ca5a86e105bfdd6f277b484a71591267a41f362c401abb1cea4152a8f1b57ae0", + "language": "Text", + "lines": 123, + "truncated": false, + "block": 1, + "row": 11945 + }, + { + "path": "conftest.py", + "sha256": "1d7d83a608982dec484c0c30bb5cc6c77d193eea32d55485af606cdb7a9b0869", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 1, + "row": 5840 + }, + { + "path": "docs/examples/0_io/tutorial_io_00_skeletons.py", + "sha256": "5216036aa0ba32de7d546dfb82382c8aa547d86633d15ea49fa0da60d455c4e9", + "language": "Python", + "lines": 226, + "truncated": false, + "block": 1, + "row": 8134 + }, + { + "path": "docs/examples/0_io/tutorial_io_01_meshes.py", + "sha256": "505426a6ec4cb0869757dd4d28a8ae37828e480f1c0cf565de99b4742963c929", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 1, + "row": 7226 + }, + { + "path": "docs/examples/0_io/tutorial_io_02_dotprops.py", + "sha256": "630e70838ac43f76464dd7f8661540bc8d99f489438c0131790e646c4224ce52", + "language": "Python", + "lines": 143, + "truncated": false, + "block": 1, + "row": 7575 + }, + { + "path": "docs/examples/0_io/tutorial_io_03_r.py", + "sha256": "5fedbf9e56b96008e3b5fdc4294fd72df7ac813abdded6d0211e8c9f893aae8f", + "language": "Python", + "lines": 192, + "truncated": false, + "block": 1, + "row": 7867 + }, + { + "path": "docs/examples/0_io/tutorial_io_04_pickle.py", + "sha256": "944186f4009b59aae70bb8c094bb98d32792e53324443b72ea8c6a75e897a4a9", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 1, + "row": 6072 + }, + { + "path": "docs/examples/0_io/zzz_tutorial_io_05_skeletonize.py", + "sha256": "d7607f697b4a15a0a06474b15e4390b1bed58d50e3503d9adb8a2cf6a535a8ab", + "language": "Python", + "lines": 252, + "truncated": false, + "block": 1, + "row": 8502 + }, + { + "path": "docs/examples/1a_plotting_general/tutorial_plotting_00_intro.py", + "sha256": "c46682a3b7d0abb9e225109e0154d0d45873ca60fb4a0993d4a448358955035c", + "language": "Python", + "lines": 354, + "truncated": false, + "block": 1, + "row": 9041 + }, + { + "path": "docs/examples/1a_plotting_general/tutorial_plotting_01_colors.py", + "sha256": "c6369d072027b7d45a04aca44938ecd74417b07e68f39f7786fc2ebee79e7846", + "language": "Python", + "lines": 307, + "truncated": false, + "block": 1, + "row": 8645 + }, + { + "path": "docs/examples/1b_plotting_2d/tutorial_plotting_2d_00_skeletons.py", + "sha256": "cd5d1f120ba848ecf6975e13b0d0b04ddf3b81b549c5c5baa4f3ed09dff0465a", + "language": "Python", + "lines": 195, + "truncated": false, + "block": 1, + "row": 8388 + }, + { + "path": "docs/examples/1b_plotting_2d/tutorial_plotting_2d_01_meshes.py", + "sha256": "0faeddc204938a8b98e17e1ca6cb8ef9940311ed76002fbbe70ad5697f5ab67b", + "language": "Python", + "lines": 206, + "truncated": false, + "block": 1, + "row": 8450 + }, + { + "path": "docs/examples/1b_plotting_2d/tutorial_plotting_2d_02_volumes.py", + "sha256": "fef18610ce1734d0feabaac8ae400e5883393a749967c49f4c0e6afc62842789", + "language": "Python", + "lines": 178, + "truncated": false, + "block": 1, + "row": 8001 + }, + { + "path": "docs/examples/1c_plotting_3d/tutorial_plotting_3d_00_skeletons.py", + "sha256": "6e42c0669ab302f3ea33fcb2709930a74ed2f0e4cba60ec1dd318c20f9e879e8", + "language": "Python", + "lines": 201, + "truncated": false, + "block": 1, + "row": 8318 + }, + { + "path": "docs/examples/1c_plotting_3d/tutorial_plotting_3d_01_meshes.py", + "sha256": "705b57b53bb0a3a1333b2811bdcef66618e939c466141f313eeb1fbf372eb3fa", + "language": "Python", + "lines": 150, + "truncated": false, + "block": 1, + "row": 7962 + }, + { + "path": "docs/examples/1c_plotting_3d/tutorial_plotting_3d_02_volumes.py", + "sha256": "7945d89eaa90929f211e00da8f4febea960c0f91174284680cf301affda891cb", + "language": "Python", + "lines": 161, + "truncated": false, + "block": 1, + "row": 8070 + }, + { + "path": "docs/examples/1d_plotting_misc/tutorial_plotting_misc_00_connectors.py", + "sha256": "ffe5b298f193ef55a73a04ba4a0751b6e5eedec681039e1a63e4f4be74e0a91b", + "language": "Python", + "lines": 353, + "truncated": false, + "block": 1, + "row": 9017 + }, + { + "path": "docs/examples/1d_plotting_misc/tutorial_plotting_misc_01_barcode.py", + "sha256": "da98f9da87b7b91ea91ac49b11db45d04bc662664cafe54f58b80c01a20383b9", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 1, + "row": 6953 + }, + { + "path": "docs/examples/1d_plotting_misc/tutorial_plotting_misc_02_topology.py", + "sha256": "4120b640f7ebb0fdb6fb3ebb05b09cd41e0e52b293e30a866f2b060ea881a213", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 1, + "row": 7229 + }, + { + "path": "docs/examples/1d_plotting_misc/tutorial_plotting_misc_03_xkcd.py", + "sha256": "0a36d78b154a6580b70a88be5acfdcd536cd3ddd572887bc05070054c1d6246a", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 1, + "row": 6134 + }, + { + "path": "docs/examples/1d_plotting_misc/zzz_tutorial_plotting_misc_04_collage.py", + "sha256": "26751fff2ac4d44efee2ba289d5aed9a4ac06d9543a7d6f3a41eadbaf47552f0", + "language": "Python", + "lines": 378, + "truncated": false, + "block": 1, + "row": 9054 + }, + { + "path": "docs/examples/1e_plotting_examples/tutorial_plotting_ex_00_cortex.py", + "sha256": "3f7cf66782e95c60a046ea43afb99e3e7a20a4a9909504a07b8003415fa4c15e", + "language": "Python", + "lines": 300, + "truncated": false, + "block": 1, + "row": 8395 + }, + { + "path": "docs/examples/2_morpho/tutorial_morpho_00_manipulate.py", + "sha256": "383fd592193ca8e49d2b6787084b271f4227183598513178086abbeda2139f40", + "language": "Python", + "lines": 451, + "truncated": false, + "block": 1, + "row": 9108 + }, + { + "path": "docs/examples/2_morpho/tutorial_morpho_01_analyze.py", + "sha256": "0372ab46dd7cd77f7449034f3fd420440f8f4d2541c592f071e2fce8b6b920c3", + "language": "Python", + "lines": 338, + "truncated": false, + "block": 1, + "row": 8600 + }, + { + "path": "docs/examples/2_morpho/tutorial_morpho_02_label_prop.py", + "sha256": "24265e64cfb7f7ad16e23aa280e5284aef0328e45d2c446999224579667cc33f", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 1, + "row": 7918 + }, + { + "path": "docs/examples/2_morpho/tutorial_morpho_03_ad_split.py", + "sha256": "734f02b49731f3abd168de79a38c68fbce7c32191a81e0221a0dc7b2f417e9b0", + "language": "Python", + "lines": 204, + "truncated": false, + "block": 1, + "row": 8195 + }, + { + "path": "docs/examples/2_morpho/zzz_tutorial_morpho_05_ivscc.py", + "sha256": "82ea2c4d7cf7945367193cc5022e2fd93c871175f4acb72aa133ce10242aeb46", + "language": "Python", + "lines": 476, + "truncated": false, + "block": 1, + "row": 9367 + }, + { + "path": "docs/examples/2_morpho/zzz_tutorial_morpho_06_ivscc_em.py", + "sha256": "8eb1a33a961ff0ad31f7232c9aa60ba486b1bdc59d53aa500df932983e60a551", + "language": "Python", + "lines": 567, + "truncated": false, + "block": 1, + "row": 9440 + }, + { + "path": "docs/examples/3_interfaces/tutorial_interfaces_00_neuron.py", + "sha256": "18830ab1788661168a442a4c50d8e3e1445f717c57a7f713e8415fa778103b34", + "language": "Python", + "lines": 332, + "truncated": false, + "block": 1, + "row": 8726 + }, + { + "path": "docs/examples/3_interfaces/tutorial_interfaces_01_neuron2.py", + "sha256": "08745e572b0dcba7a42da879577f2892de4d1dc0707c155560c6d2ab7d645cfa", + "language": "Python", + "lines": 190, + "truncated": false, + "block": 1, + "row": 7728 + }, + { + "path": "docs/examples/3_interfaces/tutorial_interfaces_02_blender.py", + "sha256": "f3aeceefdb955cf55fcd7a28e58f2d0024291007c08e414469126ddd0aad3ea6", + "language": "Python", + "lines": 165, + "truncated": false, + "block": 1, + "row": 7675 + }, + { + "path": "docs/examples/4_remote/tutorial_remote_00_neuprint.py", + "sha256": "f5bf44cc24796fedbe35a1fc1d13287f62868f4e80a02927328626e8887d87fd", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 1, + "row": 6901 + }, + { + "path": "docs/examples/4_remote/tutorial_remote_01_cloudvolume.py", + "sha256": "1761f07bccb6734104bd8504fb43540168c15497b246f7ab463b8643329b8404", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 1, + "row": 7366 + }, + { + "path": "docs/examples/4_remote/tutorial_remote_02_microns.py", + "sha256": "8d0972dd85bd76095b76315b184b2dbd90686464f509bc452bad9fc667513d2c", + "language": "Python", + "lines": 199, + "truncated": false, + "block": 1, + "row": 8072 + }, + { + "path": "docs/examples/4_remote/tutorial_remote_03_insect_db.py", + "sha256": "50c3ee11302eb8b16b93e86ce25332dc22d8eafbe86e3faeabde0476978ae576", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 1, + "row": 7008 + }, + { + "path": "docs/examples/4_remote/tutorial_remote_04_h01.py", + "sha256": "06c17f9cdc2c2b8bb2ee34d790b59ce591336f1afc46f71c44a405e84692d8af", + "language": "Python", + "lines": 163, + "truncated": false, + "block": 1, + "row": 7303 + }, + { + "path": "docs/examples/4_remote/tutorial_remote_05_bil.py", + "sha256": "a6e7f500556afa4710d0b5c050be8a84e20f78bd813a2c25aab72378e3b665c2", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 1, + "row": 7059 + }, + { + "path": "docs/examples/5_nblast/tutorial_nblast_00_intro.py", + "sha256": "601c4e3e39b0b9f72e18300654e1a5ba004879bff6b3b35dfcc3f69ab18adee2", + "language": "Python", + "lines": 456, + "truncated": false, + "block": 1, + "row": 9212 + }, + { + "path": "docs/examples/5_nblast/tutorial_nblast_03_smat.py", + "sha256": "3af0b0414f4e19c9b1c853685f214fd3d4f459bf999d88f3c7c6d989f7647e51", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 1, + "row": 7665 + }, + { + "path": "docs/examples/5_nblast/zzz_tutorial_nblast_01_flycircuit.py", + "sha256": "9a9983d76c0b68ce8b557d6f556d45458232fee1a6e6973ed476ba73cc6efa8d", + "language": "Python", + "lines": 159, + "truncated": false, + "block": 1, + "row": 7611 + }, + { + "path": "docs/examples/5_nblast/zzz_tutorial_nblast_02_hemibrain.py", + "sha256": "e237341de42a48ed7e72feb6c72a12d5847c22cff0d291dc66095e1644a21d8f", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 1, + "row": 7831 + }, + { + "path": "docs/examples/6_misc/tutorial_misc_00_multiprocess.py", + "sha256": "1f6ee9c796611b6585e9c0757b5b8c3d3c68360701164813f5be4c853f9a6b78", + "language": "Python", + "lines": 444, + "truncated": false, + "block": 1, + "row": 9199 + }, + { + "path": "docs/examples/6_misc/tutorial_misc_01_transforms.py", + "sha256": "88ab44cf76475f90a9705e4e44dc2293e33e2fa4384e856e0a8a2f1824458da8", + "language": "Python", + "lines": 471, + "truncated": false, + "block": 1, + "row": 9313 + }, + { + "path": "docs/examples/7_ml/tutorial_ml_00_normalize.py", + "sha256": "dfaeac0f4e8a6ea25b4125ce6a4b9a1261e0a5d9b62c7333815add23e38ffd4d", + "language": "Python", + "lines": 209, + "truncated": false, + "block": 1, + "row": 8238 + }, + { + "path": "docs/examples/7_ml/tutorial_ml_01_sampling.py", + "sha256": "61268ce1d69b71ebac25a6220f9644cbec6f82638ab4fcff9d0be487b16728c2", + "language": "Python", + "lines": 486, + "truncated": false, + "block": 1, + "row": 9347 + }, + { + "path": "docs/examples/7_ml/tutorial_ml_02_augment.py", + "sha256": "b8626ab433c09ffa6df9d49869420d497ce93bdb2c5cc084e36bb73c20796383", + "language": "Python", + "lines": 184, + "truncated": false, + "block": 1, + "row": 8068 + }, + { + "path": "docs/examples/tutorial_basic_00_basics.py", + "sha256": "71b7abea21183f9e5dd130b883912d6b5ccfdc4a1dd06d941c1ce97f1068b6db", + "language": "Python", + "lines": 139, + "truncated": false, + "block": 1, + "row": 7151 + }, + { + "path": "docs/examples/tutorial_basic_01_neurons.py", + "sha256": "a99446719332e812db219011521ab4fca55a2c0daf01dfbaf19a95becb7e2b3a", + "language": "Python", + "lines": 625, + "truncated": false, + "block": 1, + "row": 9366 + }, + { + "path": "docs/examples/tutorial_basic_02_neuronlists.py", + "sha256": "780a1dbc9a828b25baa6bccdb10145dc6c8d7e8372c916e56bfbbc72048021b0", + "language": "Python", + "lines": 364, + "truncated": false, + "block": 1, + "row": 8553 + }, + { + "path": "docs/examples/tutorial_basic_03_masking.py", + "sha256": "3c256671822e5e10845669dd96eb6498ad30e1706f8c1ac49a99b222f9bf11e4", + "language": "Python", + "lines": 537, + "truncated": false, + "block": 1, + "row": 9355 + }, + { + "path": "docs/examples/tutorial_basic_04_attach.py", + "sha256": "29757564953cf5aa56af7c75576c7d33bff7661631f1ac706aa3926c8775f8e2", + "language": "Python", + "lines": 711, + "truncated": false, + "block": 1, + "row": 9640 + }, + { + "path": "docs/gallery_conf.py", + "sha256": "6574d0f53b4b1a4d876e46b4626c698ff87c5afe5e571d2aae2185562cb8a28e", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 1, + "row": 5575 + }, + { + "path": "docs/javascripts/katex.js", + "sha256": "f6d27329414c8780cdf77486ccd64982778c786dc89b6c040a5f90da5532fffd", + "language": "JavaScript", + "lines": 10, + "truncated": false, + "block": 1, + "row": 623 + }, + { + "path": "docs/javascripts/mathjax.js", + "sha256": "09f8b2d572fd8078534a65f82ae31b77e0fc581d88d5e016d5b10dd8b18e9d7c", + "language": "JavaScript", + "lines": 19, + "truncated": false, + "block": 1, + "row": 675 + }, + { + "path": "docs/tools/__init__.py", + "sha256": "f9048575489336c8f64ffe4f7febb9a68a4ab17ebc08de92036f9e63b5069e32", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4991 + }, + { + "path": "docs/tools/nb_to_doc.py", + "sha256": "debf1e7c0157c3318ef11a0f4089b694dfd77a1a28f2b7a0bea1e527b80d9e5e", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 1, + "row": 5724 + }, + { + "path": "download_test_data.sh", + "sha256": "ac99f2f5638b50bcb03de2eb5b8da08c4691ea0222c6066ac3bbf56e05aef29c", + "language": "Shell", + "lines": 21, + "truncated": false, + "block": 1, + "row": 11576 + }, + { + "path": "examples/colab.ipynb", + "sha256": "3d87d4f01439fcee1ae24e64d5de2c11c95c9ae666ce2052673d99eda242b245", + "language": "Jupyter", + "lines": 207, + "truncated": false, + "block": 1, + "row": 1870 + }, + { + "path": "main.py", + "sha256": "c1707ca5818268774c502fcd5cf69c636161a462da74a98412fd00782ea64abe", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 1, + "row": 5421 + }, + { + "path": "navis/__init__.py", + "sha256": "4501e776fffba07428d6cf655b32dd5d993d520ae67e4f9782975c6b021d22e1", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 1, + "row": 6036 + }, + { + "path": "navis/__version__.py", + "sha256": "76efb0ab6de1fe8411265f0a734c2dea2b8502f68ddbe41960d797d9a9828ef7", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 1, + "row": 5516 + }, + { + "path": "navis/_deprecated.py", + "sha256": "826072899229a95042adb024eca3fb2b11f2e5c58c8286237bd6d67047a77264", + "language": "Python", + "lines": 321, + "truncated": false, + "block": 1, + "row": 8797 + }, + { + "path": "navis/compute/__init__.py", + "sha256": "069d7896497110f5b3cb5fb7163b77c2765a5571be1357ec2692103193481132", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 1, + "row": 6559 + }, + { + "path": "navis/compute/backends/__init__.py", + "sha256": "911cbbeda0c954eb70c976f6ea5a87802ba566c8d397fc5527ed766923eb6cf5", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 1, + "row": 6693 + }, + { + "path": "navis/compute/backends/_dask.py", + "sha256": "17d981314001243114925dd8247087fa0aedec4330aaa361cd3e68e3d1447a40", + "language": "Python", + "lines": 176, + "truncated": false, + "block": 1, + "row": 7983 + }, + { + "path": "navis/compute/backends/_joblib.py", + "sha256": "2d39672143b680ceef49a28c7cc5e0554b7ff86a05d1389208bf6a3e09be9a0f", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 1, + "row": 7816 + }, + { + "path": "navis/compute/backends/_pathos.py", + "sha256": "57485e8afd169f0ea80e0f36d9430eb2c4a4f762d9b78c92dc1e1b10c28827e3", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 1, + "row": 6456 + }, + { + "path": "navis/compute/backends/_submitit.py", + "sha256": "e6d559e5a504c12222dad51f5ac098f7ba6759b4609610fd14ae4fbf8e41d071", + "language": "Python", + "lines": 163, + "truncated": false, + "block": 1, + "row": 7866 + }, + { + "path": "navis/compute/backends/base.py", + "sha256": "c6180fe6c76b0b2892e0160a0dd1e4d1333ab4f85dfe0b48fc5bb479de4bf120", + "language": "Python", + "lines": 769, + "truncated": false, + "block": 1, + "row": 9664 + }, + { + "path": "navis/compute/backends/local.py", + "sha256": "3f84cf7f87d765444f2f6683ed5e62344910fe9092065a46852ecd285761456b", + "language": "Python", + "lines": 184, + "truncated": false, + "block": 1, + "row": 7732 + }, + { + "path": "navis/compute/dispatch.py", + "sha256": "2fa80f2cd9b433bdd601164b1c637f2dc776190ee049a8b48959c70af593f7bd", + "language": "Python", + "lines": 641, + "truncated": false, + "block": 1, + "row": 9559 + }, + { + "path": "navis/compute/threads.py", + "sha256": "1b445cb356512814880fa3bffc188cf45e08f1d5c93022ac66dc16327282f1ac", + "language": "Python", + "lines": 188, + "truncated": false, + "block": 1, + "row": 7984 + }, + { + "path": "navis/config.py", + "sha256": "0546e9a95a7c40cbac46c259d32994f1bb53894624f72a81c1dd9038372b1a0b", + "language": "Python", + "lines": 337, + "truncated": false, + "block": 1, + "row": 8881 + }, + { + "path": "navis/conftest.py", + "sha256": "73abb03530da888f443628c57aa253c4a49d0f19c5627e17f5c6facd65f66605", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 1, + "row": 5553 + }, + { + "path": "navis/connectivity/__init__.py", + "sha256": "87af72a57cb16f05278f37ba39ee788fc2a2b7cbbd7ff84c03d0a84271f68741", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 1, + "row": 5719 + }, + { + "path": "navis/connectivity/adjacency.py", + "sha256": "460344571795f33ad6080caaa3f31832e9c2fcfcbeabfb1168f01e1833181ba4", + "language": "Python", + "lines": 236, + "truncated": false, + "block": 1, + "row": 8194 + }, + { + "path": "navis/connectivity/cnmetrics.py", + "sha256": "26493164698c0fdc70290900075e54da4c41c73e08b30269745e083aacc0e835", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 1, + "row": 7238 + }, + { + "path": "navis/connectivity/matrix_utils.py", + "sha256": "914784319b29cfdc87f1c7373b2ba5b5b52c8846ca0a5927b827edf8d76d4141", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 1, + "row": 7395 + }, + { + "path": "navis/connectivity/predict.py", + "sha256": "8729c3c5688f9769f31236541d3c96717cf51b3e1d08ceb831d291aee4ce5961", + "language": "Python", + "lines": 181, + "truncated": false, + "block": 1, + "row": 7906 + }, + { + "path": "navis/connectivity/similarity.py", + "sha256": "dbfa7503010618b118fd3af428b1d57561ac84f15933f23ac1d4a63641e28a55", + "language": "Python", + "lines": 494, + "truncated": false, + "block": 1, + "row": 9328 + }, + { + "path": "navis/conversion/__init__.py", + "sha256": "bfd8b39679e5ab18c059dfe97cef2fdab689d7714d1c74f0ae6ec182cf845aa9", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 1, + "row": 5652 + }, + { + "path": "navis/conversion/converters.py", + "sha256": "89a09c850f53cf2b1a9e340b627ede2ec76f9ff158b55a9c449394cae3189465", + "language": "Python", + "lines": 884, + "truncated": false, + "block": 1, + "row": 9675 + }, + { + "path": "navis/conversion/meshing.py", + "sha256": "6c9326a58a157d3214f68679e3d890683a2cccb8b318b3f17868444293d7dda8", + "language": "Python", + "lines": 285, + "truncated": false, + "block": 1, + "row": 8414 + }, + { + "path": "navis/conversion/wrappers.py", + "sha256": "34e7e8bd2aeb8fd09f3811f8d2ea84d1ff08fd4cd562b74847bbf119f0b45fdf", + "language": "Python", + "lines": 204, + "truncated": false, + "block": 1, + "row": 8127 + }, + { + "path": "navis/core/__init__.py", + "sha256": "c9e59b647f075d051af2675f2c34bf74e3db9bc484836d10016051becad5d304", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 1, + "row": 5992 + }, + { + "path": "navis/core/base.py", + "sha256": "b30a5981c26d48ff44acd50c1fddeb6a525453bbba9eb158e91e5f392de07bc4", + "language": "Python", + "lines": 1781, + "truncated": false, + "block": 1, + "row": 9824 + }, + { + "path": "navis/core/core_utils.py", + "sha256": "9922451160d1e99bb7587d292197ac93528c4f1fa3e39bf07805f1f687eb9c78", + "language": "Python", + "lines": 838, + "truncated": false, + "block": 1, + "row": 9624 + }, + { + "path": "navis/core/dotprop.py", + "sha256": "756c1fa0a921b48cfed050f8b1711d0e3104dcc67e2feb039101b6f6e95454cc", + "language": "Python", + "lines": 713, + "truncated": false, + "block": 1, + "row": 9520 + }, + { + "path": "navis/core/masking.py", + "sha256": "24c8672e46186bf2f3332b50b9ce13edda60764364afc8e9e32f7fa872eb59ce", + "language": "Python", + "lines": 367, + "truncated": false, + "block": 1, + "row": 8980 + }, + { + "path": "navis/core/mesh.py", + "sha256": "acd1986a8cdee6429a54ad118cd4711b10e3196e75a59dcb1dd8d8d64b0d5aa7", + "language": "Python", + "lines": 725, + "truncated": false, + "block": 1, + "row": 9560 + }, + { + "path": "navis/core/neuronlist.py", + "sha256": "ba1232aa33118d514e0a04054c3268eb08127678fc10252fee1e8769ea751753", + "language": "Python", + "lines": 1281, + "truncated": false, + "block": 1, + "row": 9778 + }, + { + "path": "navis/core/neurons.py", + "sha256": "3bdcfd0bae8ffdfc48114b0901afa9157e19588c53259338d45a11390b457984", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 1, + "row": 5694 + }, + { + "path": "navis/core/pipeline.py", + "sha256": "bf282a0e9c51ebf929b740dfa334d2dc9533896fb23989c0331166e04eeb5cfe", + "language": "Python", + "lines": 824, + "truncated": false, + "block": 1, + "row": 9635 + }, + { + "path": "navis/core/schema.py", + "sha256": "69004c9ac01a660bece6f68b6292eb89a138a3800813d07123801c3cf00662da", + "language": "Python", + "lines": 2525, + "truncated": false, + "block": 1, + "row": 9858 + }, + { + "path": "navis/core/skeleton.py", + "sha256": "d50c56bf284c44b57779562a7b3739de3ff01d13fc836a91917cf2f220ce016b", + "language": "Python", + "lines": 1626, + "truncated": false, + "block": 1, + "row": 9804 + }, + { + "path": "navis/core/volumes.py", + "sha256": "8deece92f4d3b2e026e17e4555028eee970c309902dca9d438aa4426b159f16c", + "language": "Python", + "lines": 738, + "truncated": false, + "block": 1, + "row": 9463 + }, + { + "path": "navis/core/voxel.py", + "sha256": "1a3e7b460ba3aa347323d806c3271a5233fbfb23f7202c292427bc94c2eb543c", + "language": "Python", + "lines": 1503, + "truncated": false, + "block": 1, + "row": 9796 + }, + { + "path": "navis/data/__init__.py", + "sha256": "b38bb1980661a27dee4dc070f179c94a251446d4511b7c2555d112083d817fb3", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5544 + }, + { + "path": "navis/data/load_data.py", + "sha256": "df3c76d1c95d57be3c60a33cfb27eeceeabd3f362928bfef563ed0756fe203cc", + "language": "Python", + "lines": 220, + "truncated": false, + "block": 1, + "row": 7878 + }, + { + "path": "navis/graph/__init__.py", + "sha256": "7633263dfc2549396997bb98094f7146be30ca1a457a28450d53bba732882c0e", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 1, + "row": 6324 + }, + { + "path": "navis/graph/clinic.py", + "sha256": "6d4320fedf4b30caa6a7b0d13dfe7b522a045a4f4420ce763472a2237a8d4097", + "language": "Python", + "lines": 246, + "truncated": false, + "block": 1, + "row": 8246 + }, + { + "path": "navis/graph/converters.py", + "sha256": "494d26b37cdb1c04f084ca1c8f1658a03d56066b182700da141c35d96a5e55b4", + "language": "Python", + "lines": 926, + "truncated": false, + "block": 1, + "row": 9638 + }, + { + "path": "navis/graph/graph_utils.py", + "sha256": "e940ae25c025f043d61cd2d244281ebdbc276e8a299e234cbd3078757afa9258", + "language": "Python", + "lines": 3635, + "truncated": false, + "block": 1, + "row": 9873 + }, + { + "path": "navis/interfaces/__init__.py", + "sha256": "91e679223e67628aec3ed81aaeddd00a40bc69abfffa240ca5decf95e7467024", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 1, + "row": 6360 + }, + { + "path": "navis/interfaces/allen_celltypes.py", + "sha256": "67ffae59a16a9205592e47f55eb4fd8b80fa56c6dde1c6aeda854c931afe4126", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 1, + "row": 6938 + }, + { + "path": "navis/interfaces/base.py", + "sha256": "8246d902a688b33977027b979776d7c5293a4fc6cf1d329c46e03392fe8f084f", + "language": "Python", + "lines": 426, + "truncated": false, + "block": 1, + "row": 8939 + }, + { + "path": "navis/interfaces/blender.py", + "sha256": "ac43a05c902b3e203ded973eead69788d7b4bc100777cbddc3856f4f84586c12", + "language": "Python", + "lines": 1255, + "truncated": false, + "block": 1, + "row": 9733 + }, + { + "path": "navis/interfaces/brain_image_library.py", + "sha256": "a67bf3dbe79bf0fa685c4dc4d332dcbfbc7b71f4cd11dc8d42c18ed7f6f12dc9", + "language": "Python", + "lines": 1258, + "truncated": false, + "block": 1, + "row": 9745 + }, + { + "path": "navis/interfaces/cajal.py", + "sha256": "bdf22cf85cebb556aa8c0c48dfe9325fb96b6a2de55cf94358a82c48d2ee1e02", + "language": "Python", + "lines": 910, + "truncated": false, + "block": 1, + "row": 9674 + }, + { + "path": "navis/interfaces/cave_utils.py", + "sha256": "70345b6a5d86f776c48337fb41433f9508b7a9c2392a51ab9a523e193f26d6f6", + "language": "Python", + "lines": 494, + "truncated": false, + "block": 1, + "row": 9174 + }, + { + "path": "navis/interfaces/h01.py", + "sha256": "3d85306730b758b06c9b0a16f4c0b6a6a3153cca7eb0025427b716e11a952ee0", + "language": "Python", + "lines": 116, + "truncated": false, + "block": 1, + "row": 7109 + }, + { + "path": "navis/interfaces/insectbrain_db.py", + "sha256": "184215cce4f5a8713640850cd5cdb33b5e5bdb23d2d63f7ced13d22ddd41cb14", + "language": "Python", + "lines": 736, + "truncated": false, + "block": 1, + "row": 9399 + }, + { + "path": "navis/interfaces/microns.py", + "sha256": "bf95d463c38c8e7bcd247930c179aab0d21d9a544eded7d047af8cd0d8fe5e2e", + "language": "Python", + "lines": 205, + "truncated": false, + "block": 1, + "row": 7953 + }, + { + "path": "navis/interfaces/neuprint.py", + "sha256": "a38217e08844d3a57405f0ad811b87374622f90d4cd9c28b321086da082054c9", + "language": "Python", + "lines": 959, + "truncated": false, + "block": 1, + "row": 9655 + }, + { + "path": "navis/interfaces/neuromorpho.py", + "sha256": "59cbfdb18472e1aef449dbc17679cc63baf27ba8bdb1e4406576c0f1bcfbd3df", + "language": "Python", + "lines": 317, + "truncated": false, + "block": 1, + "row": 8476 + }, + { + "path": "navis/interfaces/neuron/__init__.py", + "sha256": "2bc443c8096450833541477ffde600f8cbcddefe0ce1c29d083568fa12d15681", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 1, + "row": 5053 + }, + { + "path": "navis/interfaces/neuron/comp.py", + "sha256": "ee5cb8c5974cdb8241a9fc587798f3872d22dfac7f375134003f192311311910", + "language": "Python", + "lines": 901, + "truncated": false, + "block": 1, + "row": 9641 + }, + { + "path": "navis/interfaces/neuron/network.py", + "sha256": "a935efff1e0d55aae88b6abd8e0d7ccdc794840639da562466dcda5c20e9059a", + "language": "Python", + "lines": 846, + "truncated": false, + "block": 1, + "row": 9613 + }, + { + "path": "navis/interfaces/neuron/utils.py", + "sha256": "114abb9847aefadd4780fee395d6b4712de5a390674d7f1f9e1d7f26ac25bc9b", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 5885 + }, + { + "path": "navis/interfaces/vfb.py", + "sha256": "dcbfbc4760dcc5ffadc4a7ea32bb1f1800f8f42ecc31feed68417c9c0267d362", + "language": "Python", + "lines": 351, + "truncated": false, + "block": 1, + "row": 8782 + }, + { + "path": "navis/intersection/__init__.py", + "sha256": "a4d0cdac27f11e75a056d8aede9ea46db65b5743d194e380f66c0f95cdca6228", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5595 + }, + { + "path": "navis/intersection/convex.py", + "sha256": "2a5634b0b8d6d32923f494de955cccf69cd18abbe0c54d205d48d66759aab953", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 1, + "row": 6330 + }, + { + "path": "navis/intersection/intersect.py", + "sha256": "1596d3f04a974be2d6d5fc46f74f730d0598a4969865e31f0416b9ef18760b7f", + "language": "Python", + "lines": 408, + "truncated": false, + "block": 1, + "row": 8976 + }, + { + "path": "navis/intersection/ray.py", + "sha256": "c74ad4264338e0574ee3fa96b75a9f08105a28c771f26ce425d95a7d06500527", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 1, + "row": 7196 + }, + { + "path": "navis/io/__init__.py", + "sha256": "3191a4ab887bd97bac9cc65c912a0d2e88d0691b3d81cecdcfa4747c357ebd91", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 1, + "row": 6025 + }, + { + "path": "navis/io/base.py", + "sha256": "b029bdfa02960ce8a4ec9abda2ceee43a866a86f373c9690e84e6037b59eb79f", + "language": "Python", + "lines": 2028, + "truncated": false, + "block": 1, + "row": 9827 + }, + { + "path": "navis/io/hdf_io.py", + "sha256": "b237282621519ad37bf33a51caeedda3b0b6a8d9bd424e557112e5e37eb7c92d", + "language": "Python", + "lines": 1127, + "truncated": false, + "block": 1, + "row": 9738 + }, + { + "path": "navis/io/json_io.py", + "sha256": "ff2210c5b9e637e7286eadf086efd69c56346ef21e6af0c87a20f83a6ce539ab", + "language": "Python", + "lines": 161, + "truncated": false, + "block": 1, + "row": 7262 + }, + { + "path": "navis/io/mesh_io.py", + "sha256": "cac2914729bddacfdc1c604fd0d861e4eb143c51bf1a9f74b7705e5b9085fa20", + "language": "Python", + "lines": 341, + "truncated": false, + "block": 1, + "row": 8752 + }, + { + "path": "navis/io/nmx_io.py", + "sha256": "30522f8a4142986e4b17574b724da855bc89e924c68cbc11476f48b3ed5ee93a", + "language": "Python", + "lines": 327, + "truncated": false, + "block": 1, + "row": 8764 + }, + { + "path": "navis/io/nrrd_io.py", + "sha256": "fddb1e8b373053814e25c571d950bd37efc85ad19ae0d26f6a073e9668a277bc", + "language": "Python", + "lines": 376, + "truncated": false, + "block": 1, + "row": 9024 + }, + { + "path": "navis/io/pq_io.py", + "sha256": "e167f22345aadd4246b48dbc9527755cf6b1afb797019edacc0f552a45581e3b", + "language": "Python", + "lines": 1251, + "truncated": false, + "block": 1, + "row": 9753 + }, + { + "path": "navis/io/precomputed_io.py", + "sha256": "07a371ba0ee097fc95ffa7e047a7ff3b89efa610bd3ab6763acbde81e591f5a2", + "language": "Python", + "lines": 686, + "truncated": false, + "block": 1, + "row": 9495 + }, + { + "path": "navis/io/rda_io.py", + "sha256": "9b75921b7dbc51f31615ebc0afeb5e0f41315c9f11f43569baf3a7aa747bfde3", + "language": "Python", + "lines": 1129, + "truncated": false, + "block": 1, + "row": 9720 + }, + { + "path": "navis/io/swc_io.py", + "sha256": "925339898ebd40d4d307d63e2ba11a880f029270234c579aae42f2fe045a07cf", + "language": "Python", + "lines": 755, + "truncated": false, + "block": 1, + "row": 9561 + }, + { + "path": "navis/io/tiff_io.py", + "sha256": "5aadc689ba46faa774d68f5c6c04fa47652f1d9b4e675986b55dc8a20b264fac", + "language": "Python", + "lines": 294, + "truncated": false, + "block": 1, + "row": 8757 + }, + { + "path": "navis/matching/__init__.py", + "sha256": "817151dc676bf75dfffe3630b42dacc646245c3ed80b2bd7c1d61f3a59ad59ef", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5557 + }, + { + "path": "navis/matching/bipartite.py", + "sha256": "7cff5d7cee03c50dd5f48f91c7322be1a300a5f8f9c619ff0a4509a071729a8c", + "language": "Python", + "lines": 242, + "truncated": false, + "block": 1, + "row": 8511 + }, + { + "path": "navis/matching/pipeline.py", + "sha256": "069b1bb87e5f940cfc5672ebd56b0fb93d0dfa619163b553c343ff4a9680add7", + "language": "Python", + "lines": 210, + "truncated": false, + "block": 1, + "row": 8144 + }, + { + "path": "navis/meshes/__init__.py", + "sha256": "9b48d113e42ab5a25542f12856440000bf42db23e84306734a56383075607959", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 1, + "row": 5635 + }, + { + "path": "navis/meshes/internals.py", + "sha256": "c6f2a6e6690bd0ab51aed809fe5ad04a48e7b62959604fa2a8b5a0e063bf6c6c", + "language": "Python", + "lines": 260, + "truncated": false, + "block": 1, + "row": 8554 + }, + { + "path": "navis/meshes/mesh_utils.py", + "sha256": "7b3fcca352c002364278d0e8bcc2bc0c7bcd660b191367bc1af0f2980bada85b", + "language": "Python", + "lines": 721, + "truncated": false, + "block": 1, + "row": 9508 + }, + { + "path": "navis/meshes/operations.py", + "sha256": "c5534724c49f67a907c1da6d9f80f9a2897c053e59b59428eb2970f4549cb4db", + "language": "Python", + "lines": 339, + "truncated": false, + "block": 1, + "row": 8972 + }, + { + "path": "navis/ml/__init__.py", + "sha256": "e6c6742a3356aa26d677b676db2750f1e96a80eb129fc5c828a186765c39655d", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 1, + "row": 6175 + }, + { + "path": "navis/ml/augment.py", + "sha256": "c7665cf31a5c7564957e4efc3dab0d659bd8619b32515bdaaee90f6b6f85a35d", + "language": "Python", + "lines": 686, + "truncated": false, + "block": 1, + "row": 9537 + }, + { + "path": "navis/ml/chunk.py", + "sha256": "a38a9b9faca263069a6ebb1b79e7433a2f022dd3e27e2a7faddaa49015c480ca", + "language": "Python", + "lines": 1098, + "truncated": false, + "block": 1, + "row": 9789 + }, + { + "path": "navis/ml/normalize.py", + "sha256": "b96dc181cd71d44db62c7a06969ca936097b6b3f4e9ce9d6277700b9307208ca", + "language": "Python", + "lines": 316, + "truncated": false, + "block": 1, + "row": 8871 + }, + { + "path": "navis/models/__init__.py", + "sha256": "2c4a29b952a5070b341256a864ba34076398112c2accb526710030d7e10c2654", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 1, + "row": 5493 + }, + { + "path": "navis/models/network_models.py", + "sha256": "4560fb41db756c58dd2cc69eb9bdeb60a8a380e7e0a2b93af50fb39c76285a51", + "language": "Python", + "lines": 658, + "truncated": false, + "block": 1, + "row": 9539 + }, + { + "path": "navis/morpho/__init__.py", + "sha256": "077336a62c5bbee04ca326ea6132b23ff55175e6fd1ad09affbbb9a6bcfe984e", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 1, + "row": 6646 + }, + { + "path": "navis/morpho/analyze.py", + "sha256": "344073dd519c2d76c98d0a75aa0cbaca52da4c1bec9717f3423a013da2ffe3bd", + "language": "Python", + "lines": 555, + "truncated": false, + "block": 1, + "row": 9383 + }, + { + "path": "navis/morpho/angles.py", + "sha256": "894394ad34269ad7ced9b6ed123b54677da9873e75db2d9bd33b8ac88fefaf63", + "language": "Python", + "lines": 370, + "truncated": false, + "block": 1, + "row": 8840 + }, + { + "path": "navis/morpho/caps.py", + "sha256": "8114bfa6a5b4e7149f288b7d012e488b158382de82f37cf381ba31c7f336d98e", + "language": "Python", + "lines": 154, + "truncated": false, + "block": 1, + "row": 7589 + }, + { + "path": "navis/morpho/fq.py", + "sha256": "9f14547f13a3122e518d1d26dbef88b9c518cdb06514352275211c71ac4f1ecb", + "language": "Python", + "lines": 163, + "truncated": false, + "block": 1, + "row": 7773 + }, + { + "path": "navis/morpho/heal.py", + "sha256": "781796ab09c5021fd56f7435fe3b8515b47dc1119d8dc31eddc8ea99fdf08865", + "language": "Python", + "lines": 239, + "truncated": false, + "block": 1, + "row": 8368 + }, + { + "path": "navis/morpho/images.py", + "sha256": "e4e91cefbf3d692fc8be809515a7cd7d837f659ed6f4a15bb444d6e1dbdade58", + "language": "Python", + "lines": 256, + "truncated": false, + "block": 1, + "row": 8468 + }, + { + "path": "navis/morpho/ivscc.py", + "sha256": "99bdba165dfb1e219575773d3e7568c003607ebf15ee41c314e67e3765c93897", + "language": "Python", + "lines": 840, + "truncated": false, + "block": 1, + "row": 9653 + }, + { + "path": "navis/morpho/manipulation.py", + "sha256": "e1720fa4c06129639ff4173f65beaf34168dc709f9210d40462af64b18b82a77", + "language": "Python", + "lines": 2596, + "truncated": false, + "block": 1, + "row": 9856 + }, + { + "path": "navis/morpho/mmetrics.py", + "sha256": "d2254bbc0020e66fef9ae3b304571f50afc7f508dbea4f821940c9598b86a752", + "language": "Python", + "lines": 1585, + "truncated": false, + "block": 1, + "row": 9812 + }, + { + "path": "navis/morpho/persistence.py", + "sha256": "9d9b9595783e8c7d520f117b742c9184cc587c45e7f019bcfe3b92f43e96e5cc", + "language": "Python", + "lines": 428, + "truncated": false, + "block": 1, + "row": 8988 + }, + { + "path": "navis/morpho/subset.py", + "sha256": "9a8302d979b6542741e57b0c28c308b253819f8b7f68def58df92e8b12a1c45c", + "language": "Python", + "lines": 582, + "truncated": false, + "block": 1, + "row": 9398 + }, + { + "path": "navis/nbl/__init__.py", + "sha256": "a3da905c15e75c7b184caa9dd99380114e6b232e9838319e70abb6b33c0b7a25", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 1, + "row": 5777 + }, + { + "path": "navis/nbl/ablast_funcs.py", + "sha256": "4129ac2a17948e1d15fa23a726df1725d3ae6fffd11b98b59ed7df4985d58bd2", + "language": "Python", + "lines": 551, + "truncated": false, + "block": 1, + "row": 9501 + }, + { + "path": "navis/nbl/backends/__init__.py", + "sha256": "6ca823041f66c7094ebb60a7a78ebdc4f105916711af08e72b23cf555da5fed9", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 1, + "row": 6123 + }, + { + "path": "navis/nbl/backends/base.py", + "sha256": "c50dbd1504d13e20445b35b09ee47fe161e1be71a2601fa6aba49f0431bcfb64", + "language": "Python", + "lines": 216, + "truncated": false, + "block": 1, + "row": 8251 + }, + { + "path": "navis/nbl/backends/builtin.py", + "sha256": "7a42415430d89a74f4c1dbfdb44df0a8aa3d0859a839e148038aa2c206344191", + "language": "Python", + "lines": 530, + "truncated": false, + "block": 1, + "row": 9485 + }, + { + "path": "navis/nbl/backends/fastcore.py", + "sha256": "096a6e043dc7cb3dd79dc9140bb22092d37689ac30671436b8e88c2345a62907", + "language": "Python", + "lines": 290, + "truncated": false, + "block": 1, + "row": 8731 + }, + { + "path": "navis/nbl/base.py", + "sha256": "bcdd6f3595fd5586d1b80d73fc30676f7e2441a66fc528554997368981cd6422", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 1, + "row": 7861 + }, + { + "path": "navis/nbl/nblast_funcs.py", + "sha256": "789f4d2969a90f41a4947941defd55a59830436764d963658612b6df4640f4d8", + "language": "Python", + "lines": 1412, + "truncated": false, + "block": 1, + "row": 9816 + }, + { + "path": "navis/nbl/smat.py", + "sha256": "9fd1d95e5b4acfaf80988d776f0a94531a93a012aacf96c5781c56719b4770fa", + "language": "Python", + "lines": 1141, + "truncated": false, + "block": 1, + "row": 9722 + }, + { + "path": "navis/nbl/synblast_funcs.py", + "sha256": "b4d9076af52e066cbe1d905da552a5ad855e136fdaf792acd271b1c47457fbc4", + "language": "Python", + "lines": 395, + "truncated": false, + "block": 1, + "row": 9066 + }, + { + "path": "navis/nbl/utils.py", + "sha256": "29bd221a5b4cee45fb57314497d5d684e2494a227f413f4e49c6b1e030c320f8", + "language": "Python", + "lines": 555, + "truncated": false, + "block": 1, + "row": 9365 + }, + { + "path": "navis/plotting/__init__.py", + "sha256": "d71367f34598c4fb1880cc6a911c352b9c1085d63981eb509d4f7c4c1b2ad6af", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 1, + "row": 5674 + }, + { + "path": "navis/plotting/_common.py", + "sha256": "3ffb55f3a1ab857fb1b5806c2033764e67d11c55d89e8cd69fcd184c8d0c0537", + "language": "Python", + "lines": 436, + "truncated": false, + "block": 1, + "row": 9018 + }, + { + "path": "navis/plotting/collage.py", + "sha256": "65e2d21901a7cb45008829b2187c209fa25c3f02b610f84847ac7509085c9a6d", + "language": "Python", + "lines": 1015, + "truncated": false, + "block": 1, + "row": 9717 + }, + { + "path": "navis/plotting/colors.py", + "sha256": "732713f612257ab5ce0e54c23ca6ef85a001ba835c2d199b7b4927047e089da6", + "language": "Python", + "lines": 805, + "truncated": false, + "block": 1, + "row": 9620 + }, + { + "path": "navis/plotting/d.py", + "sha256": "523ca2fee57c2855ff39b2226d8be1bb24670596f1d4c2b33189ad38134bfb39", + "language": "Python", + "lines": 194, + "truncated": false, + "block": 1, + "row": 7930 + }, + { + "path": "navis/plotting/dd.py", + "sha256": "04c22459f85484a8ef4998e9a1f73ff5be9463e876d6dea3a28b98ebcf52da69", + "language": "Python", + "lines": 2888, + "truncated": false, + "block": 1, + "row": 9865 + }, + { + "path": "navis/plotting/ddd.py", + "sha256": "59f6824c313ae584cebed0c61c9962e2802628f97c4e3c4c27a48b4cdf6bcf00", + "language": "Python", + "lines": 837, + "truncated": false, + "block": 1, + "row": 9652 + }, + { + "path": "navis/plotting/flat.py", + "sha256": "68f9423b9f9827a0397d7db68e49489ec0c86c82fb46ced7f5e96e75954be8e7", + "language": "Python", + "lines": 541, + "truncated": false, + "block": 1, + "row": 9235 + }, + { + "path": "navis/plotting/k3d/conftest.py", + "sha256": "15104724f6f8976e5b3a6e30350f8c6539bf0e5eefb03aa6d92aa3f6bb109efd", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 1, + "row": 5153 + }, + { + "path": "navis/plotting/k3d/k3d_objects.py", + "sha256": "607ddc32dceb218e43afbf7595895072fd54aa2e9f5ba58e0a1dc90b3837e071", + "language": "Python", + "lines": 455, + "truncated": false, + "block": 1, + "row": 9116 + }, + { + "path": "navis/plotting/plot_utils.py", + "sha256": "91dcf72f32eeff5afb71ee691e653c02e2a9a35e4ddbc0f0ffc6ea6d2d9646d7", + "language": "Python", + "lines": 796, + "truncated": false, + "block": 1, + "row": 9568 + }, + { + "path": "navis/plotting/plotly/conftest.py", + "sha256": "7ae47093ec1543140c4592698cd5c933a475d9b42dbe0da1624f4f4ce110d84f", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 1, + "row": 5165 + }, + { + "path": "navis/plotting/plotly/graph_objs.py", + "sha256": "b34bae07752557f94bad0025242e963b0f53521bfb7bf5eb7dbd1e4b20807de5", + "language": "Python", + "lines": 830, + "truncated": false, + "block": 1, + "row": 9587 + }, + { + "path": "navis/plotting/render.py", + "sha256": "7c531ca8db97ac348405c33fbabdaf3cff3db8fa643368bd227edbe77f442bd0", + "language": "Python", + "lines": 307, + "truncated": false, + "block": 1, + "row": 8706 + }, + { + "path": "navis/plotting/settings.py", + "sha256": "7142885581f37298b0bb7e4b4834a3ceb6187eda7f4499d1faee18f9e2fdd628", + "language": "Python", + "lines": 297, + "truncated": false, + "block": 1, + "row": 8569 + }, + { + "path": "navis/plotting/viewer_utils.py", + "sha256": "3791dd409536345dc1bd8b918142c74746de39d781e314b030a359e8131a8bee", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 1, + "row": 6976 + }, + { + "path": "navis/sampling/__init__.py", + "sha256": "6ddd4ad7068b4dd9ba31cabefb674a06a3b140f32776a7109119e6a9448ca037", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 1, + "row": 5779 + }, + { + "path": "navis/sampling/downsampling.py", + "sha256": "6723cad79f6a23aad5b67e23799a71f445cd4ca3e29e0b3ce0a6af180ebdeab6", + "language": "Python", + "lines": 486, + "truncated": false, + "block": 1, + "row": 9379 + }, + { + "path": "navis/sampling/points.py", + "sha256": "488aa8324cc904473fec426bea389a46a960592949a14cb8f3fda90be34b5a6b", + "language": "Python", + "lines": 803, + "truncated": false, + "block": 1, + "row": 9663 + }, + { + "path": "navis/sampling/resampling.py", + "sha256": "b65b8c7dc6d9fe68701fa02867214ea4188cc825e4622845a8f49bf453b9a3c6", + "language": "Python", + "lines": 990, + "truncated": false, + "block": 1, + "row": 9737 + }, + { + "path": "navis/sampling/utils.py", + "sha256": "12d88ec551622575db9191ac89c42e27e6b5b23943d71a8b7a71915a9a435fe5", + "language": "Python", + "lines": 273, + "truncated": false, + "block": 1, + "row": 8578 + }, + { + "path": "navis/transforms/__init__.py", + "sha256": "9dc3711e54ef12035901ab63f0d655947ebf1fbf2a4c64f01368ab079d992c22", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 1, + "row": 5950 + }, + { + "path": "navis/transforms/affine.py", + "sha256": "ceeb8bc2447e8e76537f09312680e9c434af7f5b6ec046fbfa0a1688845834a2", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 1, + "row": 7001 + }, + { + "path": "navis/transforms/align.py", + "sha256": "3a1f95ae2dce94d7a9f58f64fa042ad2796794af7cfa31851b7c534e59caaee2", + "language": "Python", + "lines": 786, + "truncated": false, + "block": 1, + "row": 9671 + }, + { + "path": "navis/transforms/backends.py", + "sha256": "ce36528fa30ec8bc9e6bea52f65573559e8a0437cad2e13dea0deb14fd9f5ad1", + "language": "Python", + "lines": 263, + "truncated": false, + "block": 1, + "row": 8594 + }, + { + "path": "navis/transforms/base.py", + "sha256": "fea0aa41f400ad11648468b0514ec4de56b836a000c9be67a7cecb9daddb35e0", + "language": "Python", + "lines": 417, + "truncated": false, + "block": 1, + "row": 8954 + }, + { + "path": "navis/transforms/cmtk.py", + "sha256": "a531ba6b8941921892753dba5b3ff351c728d10da43df9e3034fbe4706f8b55f", + "language": "Python", + "lines": 945, + "truncated": false, + "block": 1, + "row": 9685 + }, + { + "path": "navis/transforms/elastix.py", + "sha256": "0222867aed3816c5e3e31bcb0e60cdadd7e389194f459fcdcb7e4fe85b96af46", + "language": "Python", + "lines": 466, + "truncated": false, + "block": 1, + "row": 9239 + }, + { + "path": "navis/transforms/factory.py", + "sha256": "63158ac33eb98681cc7afc662bbd1b8b39098191209da72d4a108bd043e55fbd", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 1, + "row": 6734 + }, + { + "path": "navis/transforms/grid.py", + "sha256": "b6d7d8ef674cc50a3a877e53f489377828beea575177cd42130a44009a358f13", + "language": "Python", + "lines": 324, + "truncated": false, + "block": 1, + "row": 8700 + }, + { + "path": "navis/transforms/h5reg.py", + "sha256": "83233b5212947cda0ed4f893ce5f410130f13644a78c2bcd07f7e72b4e314930", + "language": "Python", + "lines": 740, + "truncated": false, + "block": 1, + "row": 9573 + }, + { + "path": "navis/transforms/h5reg_java.py", + "sha256": "571d593d5732e9536d8bd2638783d577e903167fee84b6e218cfd9d9c09358b6", + "language": "Python", + "lines": 215, + "truncated": false, + "block": 1, + "row": 8069 + }, + { + "path": "navis/transforms/h5reg_numba.py", + "sha256": "6c48e372a34b19ffcd45d121db726f0e08a8864e0e477d40e836346288d97e7d", + "language": "Python", + "lines": 298, + "truncated": false, + "block": 1, + "row": 8315 + }, + { + "path": "navis/transforms/images.py", + "sha256": "97e1f9eefbbdc5889199d87b263cf75903e896fe0e4977bf81a0bbe0fc686f79", + "language": "Python", + "lines": 207, + "truncated": false, + "block": 1, + "row": 7971 + }, + { + "path": "navis/transforms/jars/TransformCoordinates.java", + "sha256": "ab78917f27dae86fb8480ab55078ff2e7ec048621377a76614e55a804ad89134", + "language": "Java", + "lines": 84, + "truncated": false, + "block": 1, + "row": 498 + }, + { + "path": "navis/transforms/moving_least_squares.py", + "sha256": "ff3015585d35895e73489548174e683d186c24a64af1a20ea28f4113f19bfe9e", + "language": "Python", + "lines": 236, + "truncated": false, + "block": 1, + "row": 8416 + }, + { + "path": "navis/transforms/similarity.py", + "sha256": "4b4013c6f4fe9603489e8471956ea7dfc7a181190f5957bfda4efe5e6ddfd32e", + "language": "Python", + "lines": 246, + "truncated": false, + "block": 1, + "row": 8305 + }, + { + "path": "navis/transforms/templates.py", + "sha256": "06955454ee0348afefbc94383b8af19051192f783129c367dacfe759254c870c", + "language": "Python", + "lines": 1823, + "truncated": false, + "block": 1, + "row": 9829 + }, + { + "path": "navis/transforms/thinplate.py", + "sha256": "f8ad84d86d6b2039b881dae02bd51c5bb443c359fb306901ecfa77b1c33a7eab", + "language": "Python", + "lines": 291, + "truncated": false, + "block": 1, + "row": 8633 + }, + { + "path": "navis/transforms/xfm_funcs.py", + "sha256": "c341567a805e542121ad541b4a651c5bb68e2adb9ef7fe451ad2128bbe62d422", + "language": "Python", + "lines": 540, + "truncated": false, + "block": 1, + "row": 9380 + }, + { + "path": "navis/utils/__init__.py", + "sha256": "c6bb45924bfe476c0083ecb4ed3a5573d2f178a8774169b78635d4c234cc49ad", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 1, + "row": 6224 + }, + { + "path": "navis/utils/cave.py", + "sha256": "98171b5331d958ef9843d9c0d68ccc082bfcaa193f66216fb07be27a420354ed", + "language": "Python", + "lines": 238, + "truncated": false, + "block": 1, + "row": 8394 + }, + { + "path": "navis/utils/cv.py", + "sha256": "aa48f5194cd4538ffc5f415efe7a11dd1d7e68478cdae9c665d12b9ff81b043c", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 1, + "row": 7334 + }, + { + "path": "navis/utils/decorators.py", + "sha256": "bf7662be2374a0431d32af320923af523d5a1650c32044cd7cdbe831729dfd78", + "language": "Python", + "lines": 774, + "truncated": false, + "block": 1, + "row": 9607 + }, + { + "path": "navis/utils/eval.py", + "sha256": "d615633915b62310204d1e1773644798f7517bfc522e0bbd5dd280e56a47b23a", + "language": "Python", + "lines": 356, + "truncated": false, + "block": 1, + "row": 8759 + }, + { + "path": "navis/utils/exceptions.py", + "sha256": "ad799f6c23258c438ebfceb77de4b19ca4337d3119ef446c3e7121a86946f3d5", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 1, + "row": 5666 + }, + { + "path": "navis/utils/http.py", + "sha256": "5bd5947fa8259123b065b931b32480945811bd06aa0d00a8c2bd13b99fde3e04", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 1, + "row": 7412 + }, + { + "path": "navis/utils/iterables.py", + "sha256": "601f73a5bd7d10f56a395424abe9f702ad76661224567b6a88c5eaa429827ee5", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 1, + "row": 6893 + }, + { + "path": "navis/utils/meshproc.py", + "sha256": "a8d3ee52fa684138f775e9be37ce0974e6491a61ba9751a536170291ed28aa47", + "language": "Python", + "lines": 263, + "truncated": false, + "block": 1, + "row": 8557 + }, + { + "path": "navis/utils/misc.py", + "sha256": "2612b93f8a30149e85cf96353f0ecb2f6234780acd3e7a8623640268e63d5f3b", + "language": "Python", + "lines": 576, + "truncated": false, + "block": 1, + "row": 9185 + }, + { + "path": "navis/utils/subclasses.py", + "sha256": "a2624fb519a16a984823ed3d650eb983b5c8e05713132e46eab3306e51dd4b01", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 1, + "row": 8065 + }, + { + "path": "navis/utils/validate.py", + "sha256": "e018f23c59ecc31d2ef3817e81a60b45b879444b327e0089fb25aadac2379210", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 1, + "row": 7488 + }, + { + "path": "run_mypy.sh", + "sha256": "5a5f22dd7e18aeee80842654490d7c04580c8b545af1211efb840dfe68c8b2b4", + "language": "Shell", + "lines": 3, + "truncated": false, + "block": 1, + "row": 11116 + }, + { + "path": "scripts/gallery_index_hook.py", + "sha256": "7a450720bd7a0404b35060f1145f83f65109da6515efcdb7b8d155bdf2329596", + "language": "Python", + "lines": 370, + "truncated": false, + "block": 1, + "row": 9052 + }, + { + "path": "scripts/gen_llms_txt.py", + "sha256": "04503cd6d06523e1cf485f191a8b3e2473c28e4bda2429a225d3c193553075a1", + "language": "Python", + "lines": 577, + "truncated": false, + "block": 1, + "row": 9344 + }, + { + "path": "scripts/gen_ref_pages.py", + "sha256": "8abff14b2b7e27abe5ce0d92f3186110a909a77c101de9c28db4e231200a5598", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 1, + "row": 6279 + }, + { + "path": "scripts/gen_ref_pages2.py", + "sha256": "9b9982b325208e3ac329d8532db5e328599f64b8cf63c4abc8a1e65c2dd8e535", + "language": "Python", + "lines": 196, + "truncated": false, + "block": 1, + "row": 7926 + }, + { + "path": "setup.py", + "sha256": "047c094a8133f841098760e3a33b959baa0ca654483db5a93b2e9b6c0ea18d5c", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 1, + "row": 6564 + }, + { + "path": "stubs/numpy/__init__.py", + "sha256": "804fd1abf28327230e92e25a6b525eb41059610a8d676cd6c708dc71f413070d", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4980 + }, + { + "path": "stubs/numpy/linalg.py", + "sha256": "7c906c4e38bf8ce16a075f8a42dd21cf53dd892e581e8be296b512b9a2c78b65", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 1, + "row": 5048 + }, + { + "path": "stubs/pandas/__init__.py", + "sha256": "998f1625876c9cb0405b0e96e7f7ee940e9f043ee546089597ae46e534e7910e", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4982 + }, + { + "path": "tests/conftest.py", + "sha256": "bbaecccddee234f30346a92f6a1b3ed7378fd4f05b2033bd87b8ea111c264fdf", + "language": "Python", + "lines": 216, + "truncated": false, + "block": 1, + "row": 7715 + }, + { + "path": "tests/fixtures/r_data/generate.py", + "sha256": "b848e3d88510045c17abcdd9653ea6e09ce83b218f3da0ba3cc0cb4260741890", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 1, + "row": 5915 + }, + { + "path": "tests/test_align.py", + "sha256": "828939645bf0c3dfc2f898609d4646addd291ed0e4f93567448a6c2f9a54bf7e", + "language": "Python", + "lines": 196, + "truncated": false, + "block": 1, + "row": 8258 + }, + { + "path": "tests/test_angles.py", + "sha256": "d8b532d5890f24851118afd7f03908139689f6ff64d3ccbd54721ce88c655e15", + "language": "Python", + "lines": 188, + "truncated": false, + "block": 1, + "row": 7881 + }, + { + "path": "tests/test_bil.py", + "sha256": "f711f2caaff760a4c4fbe12bdd32787a9cd9f22539ccf8943d5484dee76b9fce", + "language": "Python", + "lines": 241, + "truncated": false, + "block": 1, + "row": 8149 + }, + { + "path": "tests/test_caps.py", + "sha256": "2397da69d095fb614321d2ccd509324c830f70a427c84ec1463029d059a167bf", + "language": "Python", + "lines": 195, + "truncated": false, + "block": 1, + "row": 7924 + }, + { + "path": "tests/test_cast_neuron.py", + "sha256": "c1493bf3ab3522120f3cdc1b618bb14661f8c29184dde6701eba503d496f9e87", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 1, + "row": 7227 + }, + { + "path": "tests/test_cave_patch.py", + "sha256": "846eeef0446ea2d662465aeac984e59f6a6e8371f09cff29892e4b5e92a493a1", + "language": "Python", + "lines": 211, + "truncated": false, + "block": 1, + "row": 7989 + }, + { + "path": "tests/test_collage.py", + "sha256": "43b0568835afc8169971f8439d654ce345ad68ee3393b4dd61dbe1d4516457ee", + "language": "Python", + "lines": 593, + "truncated": false, + "block": 1, + "row": 9391 + }, + { + "path": "tests/test_compute_backends.py", + "sha256": "25121a5053b0089f9ea3caec72b13be82400c6bb2b817607f1a5dec659534c09", + "language": "Python", + "lines": 873, + "truncated": false, + "block": 1, + "row": 9629 + }, + { + "path": "tests/test_compute_cluster.py", + "sha256": "3ef75cbceec84309041750b1451dec369005950c1bdaff2c708e922d977455cf", + "language": "Python", + "lines": 291, + "truncated": false, + "block": 1, + "row": 8659 + }, + { + "path": "tests/test_compute_threads.py", + "sha256": "ba3aac23bf471967ad77535ee6c51bed2b0b93083a0a64d83789a8e279116bb0", + "language": "Python", + "lines": 325, + "truncated": false, + "block": 1, + "row": 8792 + }, + { + "path": "tests/test_connected_components.py", + "sha256": "7eac886d229a3a4ef7b47a559baf29c1bf471e62cf087a5e18b26cde9d8571e7", + "language": "Python", + "lines": 354, + "truncated": false, + "block": 1, + "row": 8736 + }, + { + "path": "tests/test_connecting_nodes.py", + "sha256": "9c32b204d4cdf23eb3760ef8220b4fb21c27d6ae13077656f3d8e9574498e248", + "language": "Python", + "lines": 218, + "truncated": false, + "block": 1, + "row": 8052 + }, + { + "path": "tests/test_connectivity.py", + "sha256": "d39554157c71184a75e7ab0fa598cc88a6027c3e8ae0ceadb0b1ab269eb9b344", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 1, + "row": 6966 + }, + { + "path": "tests/test_deprecated_names.py", + "sha256": "1a28d0914f1dd874d5d47c63960f2068aff281ce17d0b9746f470363bb9eb585", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 1, + "row": 7356 + }, + { + "path": "tests/test_dotprops.py", + "sha256": "7559c1086a7d04b534999893bd84509f9f30334cb7672640eeb8d0b1e0931e63", + "language": "Python", + "lines": 310, + "truncated": false, + "block": 1, + "row": 8747 + }, + { + "path": "tests/test_downsample.py", + "sha256": "e77dfbf42e6bec9729ac7d3269aa0114de758d06b4089d81b0663cfc4768b972", + "language": "Python", + "lines": 378, + "truncated": false, + "block": 1, + "row": 9028 + }, + { + "path": "tests/test_error_messages.py", + "sha256": "64eba7f1c01c8f3e1ed2ae2c40214791fe4e6c473f5e2aecbab1beab8984c161", + "language": "Python", + "lines": 206, + "truncated": false, + "block": 1, + "row": 7990 + }, + { + "path": "tests/test_extra_edges.py", + "sha256": "98f7731353faeab501a05d6b6a5c676cf40a195fe7e2563be605e287dda2a7ce", + "language": "Python", + "lines": 349, + "truncated": false, + "block": 1, + "row": 8795 + }, + { + "path": "tests/test_face_connectivity.py", + "sha256": "7348a8d90c3209af5fa5f9971999e0689350e0432c8068062f35ed335d135668", + "language": "Python", + "lines": 409, + "truncated": false, + "block": 1, + "row": 9080 + }, + { + "path": "tests/test_flow_metrics.py", + "sha256": "1e41b2e7c42e2808bbf6785c7272ceadc5cc53ad98fad6b0737e451525ea48ce", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 1, + "row": 7188 + }, + { + "path": "tests/test_geodesic_clusters.py", + "sha256": "45cba821150be0d1e2cc57d85339c8713a00391a5c803e05e51f77dff59ef715", + "language": "Python", + "lines": 223, + "truncated": false, + "block": 1, + "row": 8169 + }, + { + "path": "tests/test_geodesic_nearest.py", + "sha256": "08f821c44e72089efe4594ea47c180405badbb89089df045ecff239e4b80e68b", + "language": "Python", + "lines": 136, + "truncated": false, + "block": 1, + "row": 7371 + }, + { + "path": "tests/test_graph_contracts.py", + "sha256": "3d7b98a567f83fe93763d49298f70b9d9a538ef3382b35b7c48409b10b1f17da", + "language": "Python", + "lines": 639, + "truncated": false, + "block": 1, + "row": 9419 + }, + { + "path": "tests/test_graph_primitives.py", + "sha256": "10fd20d32be8acee71afd5250287d59a5cce83f42e4756b9641999206873198d", + "language": "Python", + "lines": 171, + "truncated": false, + "block": 1, + "row": 7664 + }, + { + "path": "tests/test_guess_change.py", + "sha256": "e68e07e1d0a7325f9c0496e6b7f2ba137ab279fc3bdf15024661fa8c81cbac1d", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 1, + "row": 7806 + }, + { + "path": "tests/test_heal.py", + "sha256": "90447c5f47285fc5c7f4628a0b6b52fafb4f5f13f6b24f49c6340ca314c95eda", + "language": "Python", + "lines": 412, + "truncated": false, + "block": 1, + "row": 8985 + }, + { + "path": "tests/test_heal_mesh.py", + "sha256": "57378dbb895fd2e2f4350e10d589eabc3d0f9ee164be6051865fca080e25a60d", + "language": "Python", + "lines": 283, + "truncated": false, + "block": 1, + "row": 8366 + }, + { + "path": "tests/test_interfaces_base.py", + "sha256": "5f55432badfd20bebb8df900a81bcc2c25f4739d4c0b58f521ddd61ac425ff19", + "language": "Python", + "lines": 344, + "truncated": false, + "block": 1, + "row": 8442 + }, + { + "path": "tests/test_io.py", + "sha256": "2fc446c9ea613eea2624198ea045fe3b758eb03f54832e0164c0887765ca5986", + "language": "Python", + "lines": 780, + "truncated": false, + "block": 1, + "row": 9565 + }, + { + "path": "tests/test_io_url.py", + "sha256": "0ae047d4e0429ff4cc6c76c5b667df49407d85e1254073fe6176126cc85a2e7e", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 1, + "row": 7320 + }, + { + "path": "tests/test_ivscc.py", + "sha256": "8f21d8e5b9ea14d46babd2b074335fa8b6dbb27c4311959552fe1dca0622bdf6", + "language": "Python", + "lines": 401, + "truncated": false, + "block": 1, + "row": 8967 + }, + { + "path": "tests/test_links.py", + "sha256": "4884156f19d4e10675553d3d71daed1770d053093349c84a4407ffd60f6c9a4f", + "language": "Python", + "lines": 1511, + "truncated": false, + "block": 1, + "row": 9797 + }, + { + "path": "tests/test_llms_txt.py", + "sha256": "65726f2f2b8bdd0dae66fd5ecde8ca25642e0b81ef4b5dde818b6bca2253fc07", + "language": "Python", + "lines": 223, + "truncated": false, + "block": 1, + "row": 8245 + }, + { + "path": "tests/test_masking.py", + "sha256": "dde35af71fc3d8dc0659da09e08b54301630cfbdb55d359aecab5c5f818c9077", + "language": "Python", + "lines": 547, + "truncated": false, + "block": 1, + "row": 9268 + }, + { + "path": "tests/test_mesh_ops.py", + "sha256": "e0b11941b53a21e72dfadf4a38dfa043184e48f543179880b22f5f05c828b619", + "language": "Python", + "lines": 611, + "truncated": false, + "block": 1, + "row": 9428 + }, + { + "path": "tests/test_mesh_process.py", + "sha256": "013b8791ded877262d3a4a857441c34b224260e6807ba63ef6a1bc93dd6f1854", + "language": "Python", + "lines": 292, + "truncated": false, + "block": 1, + "row": 8630 + }, + { + "path": "tests/test_ml.py", + "sha256": "460790379ec49e55e33743ddd8c9b1974557ffa476e61fecda5168fc561f8bc9", + "language": "Python", + "lines": 918, + "truncated": false, + "block": 1, + "row": 9726 + }, + { + "path": "tests/test_models/test_network_models.py", + "sha256": "b946e8a4e745abcbf23eafb5eff2ff06862bb6d3389c3872914d5c821435ee3e", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 1, + "row": 6519 + }, + { + "path": "tests/test_morpho_contracts.py", + "sha256": "a12b24134b37216d4dab5e92acb725eecd119a8c3a591c818cedd5297066f483", + "language": "Python", + "lines": 251, + "truncated": false, + "block": 1, + "row": 8355 + }, + { + "path": "tests/test_nbl/test_extract_matches.py", + "sha256": "7a8aaf75e187e0711ea496cc3a6c4de7a9fcde3bf19cd368fd49616a13eec0f5", + "language": "Python", + "lines": 293, + "truncated": false, + "block": 1, + "row": 8624 + }, + { + "path": "tests/test_nbl/test_nblast_dispatch.py", + "sha256": "7643cd449e56533902abeb2e54b58f5a0d03db37380e7b74e46c6d22ec08280c", + "language": "Python", + "lines": 259, + "truncated": false, + "block": 1, + "row": 8643 + }, + { + "path": "tests/test_nbl/test_nblast_knn.py", + "sha256": "7eccaf947d0179c2f73a8bab6f3aa35631f88d2abca704a73741b6dd5c12c818", + "language": "Python", + "lines": 255, + "truncated": false, + "block": 1, + "row": 8492 + }, + { + "path": "tests/test_nbl/test_partition.py", + "sha256": "441150cd8944ed7920b61367f53803245b0a7e1b075e295870ba808d26ed55f3", + "language": "Python", + "lines": 131, + "truncated": false, + "block": 1, + "row": 7492 + }, + { + "path": "tests/test_nbl/test_smat.py", + "sha256": "f85e7cdadb3b14e90a8a687fb2549847fc521c0d45187d06c7152f79443a5242", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 1, + "row": 7081 + }, + { + "path": "tests/test_neuron_methods.py", + "sha256": "e59f779e8780ce60f95bd2001b9fb0300835ec2511e968125229f22e9590740e", + "language": "Python", + "lines": 467, + "truncated": false, + "block": 1, + "row": 9107 + }, + { + "path": "tests/test_neurons.py", + "sha256": "9c00fcc7d3951382d67b54ec25803a667174a10afa04272eea42e94eb724fefb", + "language": "Python", + "lines": 337, + "truncated": false, + "block": 1, + "row": 8793 + }, + { + "path": "tests/test_node_label_sorting.py", + "sha256": "6abe74c9bbe62cd777e86fdbe40d03211e0db68cdc50b022eb103d6c5967ce07", + "language": "Python", + "lines": 109, + "truncated": false, + "block": 1, + "row": 7141 + }, + { + "path": "tests/test_parallel.py", + "sha256": "72c03227d2b5c5992a2c2e7e0d30531ef3d21d19f50039a0895dc49d898c1b0e", + "language": "Python", + "lines": 288, + "truncated": false, + "block": 1, + "row": 8599 + }, + { + "path": "tests/test_pipeline.py", + "sha256": "e4d151a1a785c2eacd8b767b225de6cf2a1868b4c6cacaf4cbe2d09e60640723", + "language": "Python", + "lines": 616, + "truncated": false, + "block": 1, + "row": 9364 + }, + { + "path": "tests/test_plotting.py", + "sha256": "aa26f26705c148e03fb0ac4be63a186827dff93f493cc0f43d91e9be9e182b30", + "language": "Python", + "lines": 2073, + "truncated": false, + "block": 1, + "row": 9839 + }, + { + "path": "tests/test_propagate_labels.py", + "sha256": "e4927e85665fdc59d3e7c0d19f0112c37ef3f6225d23d3bf861617a02ad73038", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 1, + "row": 7013 + }, + { + "path": "tests/test_quiet_logger.py", + "sha256": "f216f800bc6f7aa073cd5e3234cd7322580d197fd9067fca3456e57d01976d5e", + "language": "Python", + "lines": 121, + "truncated": false, + "block": 1, + "row": 7147 + }, + { + "path": "tests/test_resample.py", + "sha256": "8c60f72318695e83da6d82780636579390cc71e4bb5b85d29c2416be5157cb4e", + "language": "Python", + "lines": 487, + "truncated": false, + "block": 1, + "row": 9261 + }, + { + "path": "tests/test_sample.py", + "sha256": "a0643bb7ddadd4932c73bfa4581f3e7e36f8a3e80651b08e9a2fef895b01b949", + "language": "Python", + "lines": 344, + "truncated": false, + "block": 1, + "row": 9063 + }, + { + "path": "tests/test_schema.py", + "sha256": "51a5a996e8d347ad58657ccc3fbeff749ed205196eb615243ce5427cb3e7733a", + "language": "Python", + "lines": 613, + "truncated": false, + "block": 1, + "row": 9434 + }, + { + "path": "tests/test_sholl.py", + "sha256": "420b1020392f3fbc71cb7156ab2a820f4a3a2bf2b6c97c306f6d8045e87f3b35", + "language": "Python", + "lines": 206, + "truncated": false, + "block": 1, + "row": 8045 + }, + { + "path": "tests/test_smooth.py", + "sha256": "05a90df3822f60a2a2e3f479e2315cbafafaf45c68917cc9f2c8d5c32cc0292a", + "language": "Python", + "lines": 343, + "truncated": false, + "block": 1, + "row": 8834 + }, + { + "path": "tests/test_soma.py", + "sha256": "557522968fda2dfdb8d5e1385bfb82d51971baf9cd847b0b15317934eee42287", + "language": "Python", + "lines": 232, + "truncated": false, + "block": 1, + "row": 8201 + }, + { + "path": "tests/test_transform_backends.py", + "sha256": "1c2042de102b6b86cbba58c75a7924bd29d05775cb653589a9f49cabf128eadb", + "language": "Python", + "lines": 1167, + "truncated": false, + "block": 1, + "row": 9747 + }, + { + "path": "tests/test_transforms.py", + "sha256": "c3818880b163c03dd27e4eeed62aac3cdb282700de2e907ce65bf41481463423", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 1, + "row": 6713 + }, + { + "path": "tests/test_tutorials.py", + "sha256": "490fd9eaf102ec0d2a6a45d163b6d26439baa312f97551855a023542a4b57371", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 1, + "row": 7123 + }, + { + "path": "tests/test_voxel.py", + "sha256": "e2a0b15007e23eefc339ce018f6424214e9c6d2ec951538828343a2cce798e73", + "language": "Python", + "lines": 1754, + "truncated": false, + "block": 1, + "row": 9815 + } + ] +} \ No newline at end of file diff --git a/manifests/73/github.com__tilgnerlab__spl-isofind.json b/manifests/73/github.com__tilgnerlab__spl-isofind.json new file mode 100644 index 0000000000000000000000000000000000000000..5fef1211976386bf54c8e964fa6d54b86a97f678 --- /dev/null +++ b/manifests/73/github.com__tilgnerlab__spl-isofind.json @@ -0,0 +1,129 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/tilgnerlab/spl-isofind", + "url": "https://github.com/tilgnerlab/Spl-IsoFind", + "host": "github.com", + "commit": "8d2f9f7186e36e63991eeabea20a31060aa3438d", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "0ad1d799e7d922f164a663fd03c21991dd10d86255822df6582c55e3051a5793", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2099 + }, + { + "path": "README.md", + "sha256": "9dcf8ee221288070e62e817d37efd72e3ef1690c2e2e1a94a99f0cdc3f8d6ea3", + "language": "Text", + "lines": 22, + "truncated": false, + "block": 1, + "row": 11791 + }, + { + "path": "docs/conf.py", + "sha256": "70c5a08e1b25d7f665413866a639da75933cdbfb3a54ca5e4e583aa3f3838cb8", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 1, + "row": 5393 + }, + { + "path": "docs/notebooks/Tutorial - moran's I.ipynb", + "sha256": "047fff924c4bacb3af3ec69aab7f641e59d9ab9273ba94ffdb9b9ed899ae9679", + "language": "Jupyter", + "lines": 194, + "truncated": false, + "block": 1, + "row": 1847 + }, + { + "path": "docs/notebooks/Tutorial - plot examples.ipynb", + "sha256": "55c83d831417067588458d7e91511d1834e0e6f8b9bd54b55732215ecc95f5c4", + "language": "Jupyter", + "lines": 156, + "truncated": false, + "block": 1, + "row": 1794 + }, + { + "path": "docs/notebooks/Tutorial - predefined regions.ipynb", + "sha256": "05d590239b5ad6686dbabde2d4b613547c45295243f6cb9a952d7e844347f0a6", + "language": "Jupyter", + "lines": 156, + "truncated": false, + "block": 1, + "row": 1791 + }, + { + "path": "src/SplIsoFind/__init__.py", + "sha256": "7d7be89c98c9c6e2dc5aa19d08c8999f0fc4c9b2bba40c6769409d16ae35d3bc", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 1, + "row": 5259 + }, + { + "path": "src/SplIsoFind/plotting.py", + "sha256": "f37a76e11aa206fd68c2eff0883e71002f4734cd6f33ea245ddcbc0d3539b38a", + "language": "Python", + "lines": 712, + "truncated": false, + "block": 1, + "row": 9467 + }, + { + "path": "src/SplIsoFind/preprocess.py", + "sha256": "072085b2d5a9d942d90a8ae43e169f5be192480ad655002ffe7c10027afd970d", + "language": "Python", + "lines": 723, + "truncated": false, + "block": 1, + "row": 9475 + }, + { + "path": "src/SplIsoFind/spatially_variable.py", + "sha256": "411909043e0764fd1cb64d0403dcae4a82602c4f8c9549845dea897233961ce1", + "language": "Python", + "lines": 619, + "truncated": false, + "block": 1, + "row": 9392 + }, + { + "path": "tutorials/Tutorial - moran's I.ipynb", + "sha256": "047fff924c4bacb3af3ec69aab7f641e59d9ab9273ba94ffdb9b9ed899ae9679", + "language": "Jupyter", + "lines": 194, + "truncated": false, + "block": 1, + "row": 1847 + }, + { + "path": "tutorials/Tutorial - plot examples.ipynb", + "sha256": "55c83d831417067588458d7e91511d1834e0e6f8b9bd54b55732215ecc95f5c4", + "language": "Jupyter", + "lines": 156, + "truncated": false, + "block": 1, + "row": 1794 + }, + { + "path": "tutorials/Tutorial - predefined regions.ipynb", + "sha256": "05d590239b5ad6686dbabde2d4b613547c45295243f6cb9a952d7e844347f0a6", + "language": "Jupyter", + "lines": 156, + "truncated": false, + "block": 1, + "row": 1791 + } + ] +} \ No newline at end of file diff --git a/manifests/76/github.com__ajn3333__sound-standardization.json b/manifests/76/github.com__ajn3333__sound-standardization.json new file mode 100644 index 0000000000000000000000000000000000000000..f760f6503496cfdcabda702774d8abb44113d71a --- /dev/null +++ b/manifests/76/github.com__ajn3333__sound-standardization.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ajn3333/sound-standardization", + "url": "https://github.com/ajn3333/Sound-Standardization", + "host": "github.com", + "commit": "7955ddee6b30262dafbeb6c596540e4a48ce41cd", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Functions/ICC2K.m", + "sha256": "613681c1b3b3b8eb63d59ee0c02b404cd7b000aba375b6dc115916bb3ae78bee", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 2, + "row": 1239 + }, + { + "path": "Functions/textAnalysis.m", + "sha256": "0cd0f7a581f798e73d93822078f57be114a5982c77bf1bfae85a78a3bac428c2", + "language": "MATLAB", + "lines": 265, + "truncated": false, + "block": 2, + "row": 1534 + }, + { + "path": "LICENSE", + "sha256": "895cf4d0c059ac5251f4b26fedbf77f27d594608cf5e585668e899b90fdba0f4", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1142 + }, + { + "path": "README.md", + "sha256": "f3b972aedcf9274931fc0515b292b9195ebd40aa9d659d4c897241b10a56bbff", + "language": "Text", + "lines": 121, + "truncated": false, + "block": 2, + "row": 2634 + }, + { + "path": "main.m", + "sha256": "37ac751230797c1ed9b284b1094fe58e4a245c8472afc5b56a76888849e6d961", + "language": "MATLAB", + "lines": 157, + "truncated": false, + "block": 2, + "row": 1451 + } + ] +} \ No newline at end of file diff --git a/manifests/77/github.com__louzonca__astronet.json b/manifests/77/github.com__louzonca__astronet.json new file mode 100644 index 0000000000000000000000000000000000000000..fb558482ccafe7d2e24cb8321dfcf819759c3cd1 --- /dev/null +++ b/manifests/77/github.com__louzonca__astronet.json @@ -0,0 +1,156 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/louzonca/astronet", + "url": "https://github.com/louzonca/AstroNet", + "host": "github.com", + "commit": "e68a8970c6e3db32f4f30f51bfc0b2e79aea5c78", + "license": "CC0-1.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Figures/fig2_4_NetworkStats.m", + "sha256": "d6a139c44a589e8b6df0e52f7f9fe6cb88eee6c48dd6ce5cafaa5c3d212de85b", + "language": "MATLAB", + "lines": 416, + "truncated": false, + "block": 1, + "row": 4207 + }, + { + "path": "Figures/fig5_timelapse.m", + "sha256": "2ca45fe058056b5f0d39fe4333c81c1d73ba0edc75a4b7d54f61a315c2c6bd17", + "language": "MATLAB", + "lines": 384, + "truncated": false, + "block": 1, + "row": 4150 + }, + { + "path": "Figures/figS1_IndivEvents.m", + "sha256": "0347f1858aab74bd83516b10e2f993a67e015931a9cda3986eebc7769a837610", + "language": "MATLAB", + "lines": 291, + "truncated": false, + "block": 1, + "row": 4098 + }, + { + "path": "Functions/activGraph.m", + "sha256": "2482a8c1c8af954b4d264672e860603c447820838450a4e5545cdd2988ecff2d", + "language": "MATLAB", + "lines": 198, + "truncated": false, + "block": 1, + "row": 3944 + }, + { + "path": "Functions/activationPaths.m", + "sha256": "f93afac8f79cbcd72321abcdfe7208e994e6eafc9855083dab539278b172fafc", + "language": "MATLAB", + "lines": 132, + "truncated": false, + "block": 1, + "row": 3766 + }, + { + "path": "Functions/cellDetectFun.m", + "sha256": "e32019c0db95ebf1f68ba056302a124023bc57b1b0c1d4d794147673131ada60", + "language": "MATLAB", + "lines": 33, + "truncated": false, + "block": 1, + "row": 2922 + }, + { + "path": "Functions/extractIndivSignals.m", + "sha256": "5f17586bea928b6cc1a716806394accb7fbf8b498cf593495d582124c9c7cb5a", + "language": "MATLAB", + "lines": 63, + "truncated": false, + "block": 1, + "row": 3320 + }, + { + "path": "Functions/globalEvSeg.m", + "sha256": "9ebe88b6267dca10ce7f062aa0a275c4b4f932ef57de918f701bfe379bfcd651", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 1, + "row": 3142 + }, + { + "path": "Functions/globalEvtActiv.m", + "sha256": "ca7b76494c62ecbeac859aab4ccda42039601c8b863ffb10eb471ee61bde834c", + "language": "MATLAB", + "lines": 31, + "truncated": false, + "block": 1, + "row": 2985 + }, + { + "path": "Functions/gp_display_out_2p.m", + "sha256": "ec35ae95fd7d80fb1f22d5b663cc49451c7b6476cbffdc3fcabeb11505a23226", + "language": "MATLAB", + "lines": 17, + "truncated": false, + "block": 1, + "row": 2510 + }, + { + "path": "Functions/label_2photons.m", + "sha256": "4ff7b3d1b5a9b1dd690de2941fb78bf08631927dd04d99f0ad25dd76127ba0c2", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 1, + "row": 3140 + }, + { + "path": "Functions/pairCrossCorr.m", + "sha256": "dd9cb9d15e29ce5b26a6397f45d4fa474a4e7afd90ad6211b1d37a1faeecbbb2", + "language": "MATLAB", + "lines": 32, + "truncated": false, + "block": 1, + "row": 2959 + }, + { + "path": "Functions/segWithBaseCorr.m", + "sha256": "fe305d3c2e2dec7419e766401eb1361b2c6eddf5f902fddf35dc0980bdb051e6", + "language": "MATLAB", + "lines": 174, + "truncated": false, + "block": 1, + "row": 3972 + }, + { + "path": "LICENSE", + "sha256": "a2010f343487d3f7618affe54f789f5487602331c0a8d03f49e9a7c547cf0499", + "language": "License", + "lines": 121, + "truncated": false, + "block": 1, + "row": 2210 + }, + { + "path": "README.md", + "sha256": "13d1a2c918b5d92c232071c0eb8d71340e32a1442050e5399ae846614ef6a35e", + "language": "Text", + "lines": 3, + "truncated": false, + "block": 1, + "row": 11768 + }, + { + "path": "Scripts/scriptProcessAllSessions.m", + "sha256": "4074d7419c54a11bbe12dfc57df28f6bbd55f0b99b644e1c059fd1ac02e0da2a", + "language": "MATLAB", + "lines": 121, + "truncated": false, + "block": 1, + "row": 3553 + } + ] +} \ No newline at end of file diff --git a/manifests/78/github.com__durdagilab__automate-neural-relational-inference-nri-.json b/manifests/78/github.com__durdagilab__automate-neural-relational-inference-nri-.json new file mode 100644 index 0000000000000000000000000000000000000000..0595ee16ee27106eb07dc648251574b431860b1f --- /dev/null +++ b/manifests/78/github.com__durdagilab__automate-neural-relational-inference-nri-.json @@ -0,0 +1,120 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/durdagilab/automate-neural-relational-inference-nri-", + "url": "https://github.com/DurdagiLab/Automate-Neural-relational-inference-NRI-", + "host": "github.com", + "commit": "6b4f7bd16cba9fb8e963d11e2aafc2a42d96f597", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Auto_NRI.py", + "sha256": "a9e14afc8f5a2d469aa3f91cba5b6624736acd6c73c9a405f8efab4eb58428a0", + "language": "Python", + "lines": 209, + "truncated": false, + "block": 1, + "row": 8287 + }, + { + "path": "LICENSE", + "sha256": "1fbdbf74e284b0f66e69981ac115c7b81eadda75e1720bb44916d8a05968383e", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2089 + }, + { + "path": "README.md", + "sha256": "6228c99903de1738ef1bab55b63877f1838bb2d985d69a39fa122ff3bc4ba15b", + "language": "Text", + "lines": 36, + "truncated": false, + "block": 1, + "row": 11823 + }, + { + "path": "wt/Test_Trajectory.py", + "sha256": "d46fa9d7de22287df246bdb33572de7f0fca4f38f914fced937809162d0e2d1b", + "language": "Python", + "lines": 252, + "truncated": false, + "block": 1, + "row": 8507 + }, + { + "path": "wt/convert_dataset.py", + "sha256": "29b28e7b19c06c75e85b57605156b305095fbd7b78aab920ee79db790f052750", + "language": "Python", + "lines": 378, + "truncated": false, + "block": 1, + "row": 8994 + }, + { + "path": "wt/main.py", + "sha256": "f7e7c2a322678144cc7c7516ea1ed968477d6b424c16282ef49db08af60c4f89", + "language": "Python", + "lines": 482, + "truncated": false, + "block": 1, + "row": 9333 + }, + { + "path": "wt/modules.py", + "sha256": "cff4bf81352e19ab5bf96aff72859eaffb20536a9487383eb6691d80218f90fc", + "language": "Python", + "lines": 655, + "truncated": false, + "block": 1, + "row": 9464 + }, + { + "path": "wt/postanalysis_path.py", + "sha256": "3cbabc05c2f5b2c1faf5ec8edc6a445c624307de3e06de9963136f46f71775fc", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 1, + "row": 7601 + }, + { + "path": "wt/postanalysis_visual.py", + "sha256": "034d64f0039030967fe5209b30763096d6c436a0b8b57345ca87cff7e2f869cf", + "language": "Python", + "lines": 208, + "truncated": false, + "block": 1, + "row": 7892 + }, + { + "path": "wt/postanalysis_visual_val.py", + "sha256": "ec54dd419f4e26401f91d50952a01fb0799ee95b512252b610f2d732d3dac024", + "language": "Python", + "lines": 199, + "truncated": false, + "block": 1, + "row": 7852 + }, + { + "path": "wt/utils.py", + "sha256": "d23436fc830af509f97616b3f95c209465d1bc0a96c307eb753573e4f42f5c2d", + "language": "Python", + "lines": 579, + "truncated": false, + "block": 1, + "row": 9389 + }, + { + "path": "wt/visual.py", + "sha256": "8f92d5bec2f4db215e52fde9be4f70c864392072d80cb718489f937b66e0ea85", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 1, + "row": 5564 + } + ] +} \ No newline at end of file diff --git a/manifests/78/github.com__hassonlab__247-encoding.json b/manifests/78/github.com__hassonlab__247-encoding.json new file mode 100644 index 0000000000000000000000000000000000000000..1752c3c36294281c89951ac92a5e821ff2779c5a --- /dev/null +++ b/manifests/78/github.com__hassonlab__247-encoding.json @@ -0,0 +1,111 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/hassonlab/247-encoding", + "url": "https://archive.softwareheritage.org/swh:1:dir:f049da571e3cbb9e7315afb70898cb075b631e0d;origin=https://github.com/hassonlab/247-encoding;visit=swh:1:snp:2d491c93ce7bd00d3d21cffe9a66b1c171bb647d;anchor=swh:1:rev:48c27e61a9fd8629d3f5da840d9f1ec2882a365f", + "host": "github.com", + "commit": "48c27e61a9fd8629d3f5da840d9f1ec2882a365f", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "7c1dd63425937f27f381576b0fec94ad57a6f560cdf46fee5eb0ab864573b47b", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2097 + }, + { + "path": "README.md", + "sha256": "4ba8d93c9a2520f3a6f4d090499b09cb5734bd7527a589215a111edff2f19e36", + "language": "Text", + "lines": 3, + "truncated": false, + "block": 1, + "row": 11769 + }, + { + "path": "scripts/tfsenc_concat.py", + "sha256": "faecae91b71525a37537d44c6792fd71d083fd576cd426f625c8fc6b9130e805", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 1, + "row": 5982 + }, + { + "path": "scripts/tfsenc_config.py", + "sha256": "722977afb2971ec26c49ee04b7a04d1951235be81ccd8ab619c6cd4973397b01", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 1, + "row": 7422 + }, + { + "path": "scripts/tfsenc_encoding.py", + "sha256": "31c76cdb2eefed27d4e335d31ddf4f21936939eae6668f90f8548a88643a9046", + "language": "Python", + "lines": 231, + "truncated": false, + "block": 1, + "row": 8018 + }, + { + "path": "scripts/tfsenc_load_signal.py", + "sha256": "241475c3256b479b072e0d523ec6f3bc5c9ef535bc712069f2ac964d61a84a53", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 1, + "row": 6744 + }, + { + "path": "scripts/tfsenc_main.py", + "sha256": "7368369bdcbd0b5ad544d3a698f7d0759e7aa4d095497939c15533c1eadcc5ea", + "language": "Python", + "lines": 203, + "truncated": false, + "block": 1, + "row": 7899 + }, + { + "path": "scripts/tfsenc_read_datum.py", + "sha256": "2f1fecc84e7b51be0716422a6b47e47b9871a28dc71c3b884a8e726c2944fb48", + "language": "Python", + "lines": 415, + "truncated": false, + "block": 1, + "row": 8698 + }, + { + "path": "scripts/tfserp_main.py", + "sha256": "640c381093196ad61fc600eaa83a5f01c520584cdce0d886eb967dd7b60b1b30", + "language": "Python", + "lines": 137, + "truncated": false, + "block": 1, + "row": 7113 + }, + { + "path": "scripts/utils.py", + "sha256": "f7eb9878a7a69153d96aaa5dadcd7b6727d946b82b2dd28280c5706fc9f60585", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 1, + "row": 5682 + }, + { + "path": "submit1.sh", + "sha256": "401f4a8476ab771a39961b7069f0d8462b051175d75b55d8db11a00b75b6b9eb", + "language": "Shell", + "lines": 38, + "truncated": false, + "block": 1, + "row": 11414 + } + ] +} \ No newline at end of file diff --git a/manifests/78/github.com__otoien__consensuscode.json b/manifests/78/github.com__otoien__consensuscode.json new file mode 100644 index 0000000000000000000000000000000000000000..13e9fda16973e64649a1d6a044b4b5f4faed734c --- /dev/null +++ b/manifests/78/github.com__otoien__consensuscode.json @@ -0,0 +1,21 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/otoien/consensuscode", + "url": "https://github.com/otoien/ConsensusCode", + "host": "github.com", + "commit": "eaee8b368256b795c81fd9251fc4d7ca88ff08e2", + "license": "CC0-1.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "a2010f343487d3f7618affe54f789f5487602331c0a8d03f49e9a7c547cf0499", + "language": "License", + "lines": 121, + "truncated": false, + "block": 1, + "row": 2210 + } + ] +} \ No newline at end of file diff --git a/manifests/78/github.com__unimelbmdap__snakemake_paper_demo_workflow.json b/manifests/78/github.com__unimelbmdap__snakemake_paper_demo_workflow.json new file mode 100644 index 0000000000000000000000000000000000000000..9aecd730cf59fb6e293e5571d3dfca7592deb1ae --- /dev/null +++ b/manifests/78/github.com__unimelbmdap__snakemake_paper_demo_workflow.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/unimelbmdap/snakemake_paper_demo_workflow", + "url": "https://github.com/unimelbmdap/snakemake_paper_demo_workflow", + "host": "github.com", + "commit": "caff2efea9ac4dd0d491ecb4747dd8fdb13fb61a", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "abc73fa560315206311163d7e7c0469eee6b50d984d88ba60a8335c49073dae5", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2137 + }, + { + "path": "README.md", + "sha256": "319182c684cfa83505abc4022e24ed9326f160cf90a784865cc30f87587028b6", + "language": "Text", + "lines": 51, + "truncated": false, + "block": 1, + "row": 11830 + }, + { + "path": "workflow/scripts/mot_correct.py", + "sha256": "971ada452734492eff688bfc43e01a8eb8fcc1a13a95bf12cb10d6494dc89014", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5384 + } + ] +} \ No newline at end of file diff --git a/manifests/79/github.com__grussmayerlab__resurf_misrgru.json b/manifests/79/github.com__grussmayerlab__resurf_misrgru.json new file mode 100644 index 0000000000000000000000000000000000000000..3906c939f4837112a3da4887a2834b56f519e2cd --- /dev/null +++ b/manifests/79/github.com__grussmayerlab__resurf_misrgru.json @@ -0,0 +1,138 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/grussmayerlab/resurf_misrgru", + "url": "https://github.com/GrussmayerLab/RESURF_MISRGRU", + "host": "github.com", + "commit": "b18d0e2e54ab15bc84e2a8ec3c424e23b4290cf8", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "28ba0677103bcd9d3fa83f8aca3f7713d7b7afc3dc0f59ce3975490091a2f270", + "language": "License", + "lines": 18, + "truncated": false, + "block": 2, + "row": 1120 + }, + { + "path": "README.md", + "sha256": "e9e9bb8f4b4fbe426045db5566d1b465e85e73a5eabda5cdd57496884a46c10a", + "language": "Text", + "lines": 40, + "truncated": false, + "block": 2, + "row": 2607 + }, + { + "path": "dataprep_example.ipynb", + "sha256": "7fa4ef3beb9f89d729d31fea304e8c40f1c69bfac926f9eeac196a30d03e4e34", + "language": "Jupyter", + "lines": 29, + "truncated": false, + "block": 2, + "row": 1005 + }, + { + "path": "prep_pt_files.ipynb", + "sha256": "d49cccf2e4f82fd5f6d92ee9860a43fd2be24cf00826b1847973e22a3661263d", + "language": "Jupyter", + "lines": 180, + "truncated": false, + "block": 2, + "row": 1043 + }, + { + "path": "src/dataload/grouped_pattern.py", + "sha256": "2f847cd432c9cdaee3926cf303fdfe3db120add17b01110da848ce6b409b26d1", + "language": "Python", + "lines": 470, + "truncated": false, + "block": 2, + "row": 2147 + }, + { + "path": "src/dataload/sampler.py", + "sha256": "4a33e9eb5101ef5f17e221d3ddbb0eef1c668a6955efcaa0a7e9413c20a5a1b9", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 2, + "row": 1948 + }, + { + "path": "src/losses/__init__.py", + "sha256": "f640ba28620bfb8751d83b7736a8e6e3cab5d46afd2b0996a700bdb41112424b", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 2, + "row": 1607 + }, + { + "path": "src/losses/losses.py", + "sha256": "813ca4caec56b857d8bf91d5e94277c584bb85ecdded1a214b225e04eac29d22", + "language": "Python", + "lines": 152, + "truncated": false, + "block": 2, + "row": 1921 + }, + { + "path": "src/models/RESURF_MISRGRU.py", + "sha256": "3dd5456bdb373f4f5b8513856a53da899e477a5b89b07843b5556e92a480a86a", + "language": "Python", + "lines": 321, + "truncated": false, + "block": 2, + "row": 2088 + }, + { + "path": "src/preprocessing/prepare_experiment_training.py", + "sha256": "e460a0ec869e26c690c24659afe3eb6c43a6814ad46853bd4cb3043b42d99d0f", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 2, + "row": 1599 + }, + { + "path": "src/preprocessing/prepare_pt_from_tiff.py", + "sha256": "0568d0c9f06641ad1d8511327419b115e2dbfcaa1a206be4c8c1b40e5e321a89", + "language": "Python", + "lines": 297, + "truncated": false, + "block": 2, + "row": 2089 + }, + { + "path": "src/train/trainer.py", + "sha256": "0126cbaef6eb958002ce0e6c58711ca32f40ff2c9cf7963b9a2e38286557406d", + "language": "Python", + "lines": 238, + "truncated": false, + "block": 2, + "row": 2042 + }, + { + "path": "src/utils/io.py", + "sha256": "768cbb312ba34fde09e82c723d3cc48ff5bf0c9d7930e6f88df4285095c7370a", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 2, + "row": 1725 + }, + { + "path": "train_example.ipynb", + "sha256": "63e4d7089443f33ba7ee4997107a7df9bd357892b7f4586f2b38f7cebcaa1109", + "language": "Jupyter", + "lines": 211, + "truncated": false, + "block": 2, + "row": 1054 + } + ] +} \ No newline at end of file diff --git a/manifests/7a/github.com__pickybinders__stoic.json b/manifests/7a/github.com__pickybinders__stoic.json new file mode 100644 index 0000000000000000000000000000000000000000..7403713c68fa02d8dc4ce478728d6bd30d0c2937 --- /dev/null +++ b/manifests/7a/github.com__pickybinders__stoic.json @@ -0,0 +1,309 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/pickybinders/stoic", + "url": "https://github.com/PickyBinders/stoic", + "host": "github.com", + "commit": "b56a1a1c1d6028787cafed24128622318d91d901", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "d0c27a4c1dd399d6ed61ef412085ad543a4b1615966c35a1a97e8d93cb98690c", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2121 + }, + { + "path": "README.md", + "sha256": "7a351ac16738da2ef0ccd22c731b18d6c94d78a161db58124eef73f69576756b", + "language": "Text", + "lines": 175, + "truncated": false, + "block": 1, + "row": 11920 + }, + { + "path": "stoic/__init__.py", + "sha256": "6c5b9d44930986911078b126898ca72aae32ed8807e75c348908da237855cc49", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 1, + "row": 5095 + }, + { + "path": "stoic/feature_pooling.py", + "sha256": "5e6a1332af428de8e8665cd1b3da039f78ca3fdeb9b62580025a2a2a5f33d991", + "language": "Python", + "lines": 383, + "truncated": false, + "block": 1, + "row": 8961 + }, + { + "path": "stoic/layers.py", + "sha256": "e928a50ea74c17ff399897792439868b00eafa40ed725a8073e023cba4daee55", + "language": "Python", + "lines": 154, + "truncated": false, + "block": 1, + "row": 7310 + }, + { + "path": "stoic/model.py", + "sha256": "d586748f0dd811534b4be0ed2bf3ba3f287422e376e0435410423dc23015cfb2", + "language": "Python", + "lines": 379, + "truncated": false, + "block": 1, + "row": 9114 + }, + { + "path": "stoic/predict_stoichiometry.py", + "sha256": "83cf6772f47b759559e2b766e60fdbe6ec2ce6c9d16bfab26022a101afb33347", + "language": "Python", + "lines": 299, + "truncated": false, + "block": 1, + "row": 8575 + }, + { + "path": "stoic/seq_emb_models.py", + "sha256": "ff9e89856a5f094d6ff21c50df3faa5f1624981a46fed22212066325b9957bcb", + "language": "Python", + "lines": 209, + "truncated": false, + "block": 1, + "row": 8095 + }, + { + "path": "stoic/utils.py", + "sha256": "8e0db31f8285ca699e215055b777c23b4987da88ad763dfbfeaf48c3b2749c71", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 1, + "row": 6970 + }, + { + "path": "stoic_colab.ipynb", + "sha256": "9acf778dbad61ba63e12d2f4018934a8aa03ce6fb6fc3d58cbb6c04c39e1bcd1", + "language": "Jupyter", + "lines": 295, + "truncated": false, + "block": 1, + "row": 1927 + }, + { + "path": "stoic_train/callbacks.py", + "sha256": "ccdcbe6c9d83ed3be12b7066a12bf04e66a52d4a4dbe4fd6bb4b17e64fcdd076", + "language": "Python", + "lines": 148, + "truncated": false, + "block": 1, + "row": 7657 + }, + { + "path": "stoic_train/dataset.py", + "sha256": "23b9795d05a9f9b7e53854739bfa08594250234de8f980da0eb5b34ca596278a", + "language": "Python", + "lines": 345, + "truncated": false, + "block": 1, + "row": 8735 + }, + { + "path": "stoic_train/download_zenodo_data.sh", + "sha256": "d85943e7ebc835230a6ee463b8157aab6da22c2420022cb3cab869f4fdb0d0cd", + "language": "Shell", + "lines": 42, + "truncated": false, + "block": 1, + "row": 11498 + }, + { + "path": "stoic_train/lightning_model.py", + "sha256": "eeed02f54bb368353d8f0cab85da5219016b32695781d4b1969476ccae1fc4ef", + "language": "Python", + "lines": 677, + "truncated": false, + "block": 1, + "row": 9556 + }, + { + "path": "stoic_train/losses.py", + "sha256": "800a86187759d9323fca39a9aae12251b893d587c018dbbbd774dbf892384c1e", + "language": "Python", + "lines": 255, + "truncated": false, + "block": 1, + "row": 8357 + }, + { + "path": "stoic_train/make_train_val_split.py", + "sha256": "ebed94079cca0bda9aa379a48b24cc40a21515891a5956302806cd62dc6c78df", + "language": "Python", + "lines": 151, + "truncated": false, + "block": 1, + "row": 7341 + }, + { + "path": "stoic_train/metrics.py", + "sha256": "b0b8493cd44a2ddd1e75cd6e7574c7e6be85f5628edade51564ed67c8aaa58fa", + "language": "Python", + "lines": 226, + "truncated": false, + "block": 1, + "row": 8078 + }, + { + "path": "stoic_train/samplers.py", + "sha256": "ae42aa4d711d1d349ea61778d6e25deae4ebd3eb602af5af89f914d1fc256819", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 1, + "row": 7682 + }, + { + "path": "stoic_train/train.py", + "sha256": "50c338b512a11aae7d0d3330f106904ee6df4a7d3376c356a6195bf35454e7a6", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 1, + "row": 5408 + }, + { + "path": "tests/conftest.py", + "sha256": "160786add0d08d186828295bb402f7dc5dd4129df1b4ce1155b85ecc674db748", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 1, + "row": 5125 + }, + { + "path": "tests/test_callbacks.py", + "sha256": "1bcd77c0e7a3e54e032141c93e4b6f20f9e13db356c8279dc27fbc78e14e05a8", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 1, + "row": 7569 + }, + { + "path": "tests/test_datamodule.py", + "sha256": "ca0fe5c9a4ca7b4c5c8202d33f820568c30dd533000cbdc6c5812e37b201c058", + "language": "Python", + "lines": 208, + "truncated": false, + "block": 1, + "row": 8138 + }, + { + "path": "tests/test_dataset.py", + "sha256": "d43c5b5e5940ddb8e064b0d6174805d21118bf39445954c1c155eb5b237cc13c", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 1, + "row": 6596 + }, + { + "path": "tests/test_feature_pooling.py", + "sha256": "aad6cc841345eea47d168cf35c408d546f6e4d9e5a73b52031a0980ebaeb0d7d", + "language": "Python", + "lines": 274, + "truncated": false, + "block": 1, + "row": 8341 + }, + { + "path": "tests/test_layers.py", + "sha256": "11019b848a9506c78b13784d33db732795bc945ba88bed384b0ed6559b748106", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 1, + "row": 7233 + }, + { + "path": "tests/test_lightning_model.py", + "sha256": "8ed37613559cc2618b01fecbd102112ee45a571f11d9b988e8bc8fa18abbe843", + "language": "Python", + "lines": 388, + "truncated": false, + "block": 1, + "row": 9019 + }, + { + "path": "tests/test_losses.py", + "sha256": "bcb151e77ae3b3820408b0477eb93d204b51dcbb92504fc1b42d20e824615f74", + "language": "Python", + "lines": 213, + "truncated": false, + "block": 1, + "row": 8339 + }, + { + "path": "tests/test_make_train_val_split.py", + "sha256": "b913a910852d703a334e9f2865ad5b6d73d915816566f9b9813b5313ef7580cd", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 1, + "row": 7489 + }, + { + "path": "tests/test_model.py", + "sha256": "123011374b8db75f056952dba05726f91fd82f991a3fd9011d7ac92b7f5a8c8f", + "language": "Python", + "lines": 250, + "truncated": false, + "block": 1, + "row": 8333 + }, + { + "path": "tests/test_predict_stoichiometry.py", + "sha256": "7495e0659063127ffe17e01aed8e9f59f42e5cd69fed72c3cf3b639c7e8f3597", + "language": "Python", + "lines": 280, + "truncated": false, + "block": 1, + "row": 8135 + }, + { + "path": "tests/test_samplers.py", + "sha256": "88349426d60426fd9198ed195858772592b99b6fc6767f57333151ba3696c7c7", + "language": "Python", + "lines": 207, + "truncated": false, + "block": 1, + "row": 7568 + }, + { + "path": "tests/test_seq_emb_models.py", + "sha256": "fd8ea7839c5e3f91003e77cf8dab28cf558555b916ca2e82e7aebfe5d6f1b0f7", + "language": "Python", + "lines": 173, + "truncated": false, + "block": 1, + "row": 7758 + }, + { + "path": "tests/test_utils.py", + "sha256": "31f8b32f130ea23c64aaef33dad2cc794b95886b027d816e0d59d699f08776a9", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 1, + "row": 6586 + } + ] +} \ No newline at end of file diff --git a/manifests/7b/github.com__kyllev__pka-dataset.json b/manifests/7b/github.com__kyllev__pka-dataset.json new file mode 100644 index 0000000000000000000000000000000000000000..ed68b274358d3f35574908b541d6fd25dadb6207 --- /dev/null +++ b/manifests/7b/github.com__kyllev__pka-dataset.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/kyllev/pka-dataset", + "url": "https://github.com/KylleV/pka-dataset", + "host": "github.com", + "commit": "a9dfb903092a607cf4baeecd882a48b37bbaf0c6", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "5824b152b5f620e9c78f1e6824ac5b55a68dd83d38b1b54ce1f07a6fec344a36", + "language": "License", + "lines": 7, + "truncated": false, + "block": 1, + "row": 2073 + }, + { + "path": "README.md", + "sha256": "9909a146d0afb49d06d64f5ddebf2d157461e1b39a9e717a2b2aa60579510367", + "language": "Text", + "lines": 40, + "truncated": false, + "block": 1, + "row": 11868 + } + ] +} \ No newline at end of file diff --git a/manifests/7b/github.com__noamteyssier__adpbulk.json b/manifests/7b/github.com__noamteyssier__adpbulk.json new file mode 100644 index 0000000000000000000000000000000000000000..8430239fabf8686540837f5668daaee929b16245 --- /dev/null +++ b/manifests/7b/github.com__noamteyssier__adpbulk.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/noamteyssier/adpbulk", + "url": "https://github.com/noamteyssier/adpbulk", + "host": "github.com", + "commit": "20ab1f6eaa3a81843cd74905dde705a2e90bd2fb", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "1b78526a29c0b5a7ba387aff70631d2d4881a121c6419ee3b2aa0aa9bf764d99", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2166 + }, + { + "path": "README.md", + "sha256": "dacf861714b8c4547bf4dd83a41d898ade80d7b5247c366fcd492baaffa7394f", + "language": "Text", + "lines": 155, + "truncated": false, + "block": 1, + "row": 11912 + }, + { + "path": "adpbulk/__init__.py", + "sha256": "2b131f8f7c07bed300f412e8a84d6b857460634d5e680a8104e6039865b7ce3c", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 1, + "row": 5069 + }, + { + "path": "adpbulk/adpbulk.py", + "sha256": "3f87aaf9198b84052e8b16a23376a59a3f248de28d625cb297453e3a531a06ba", + "language": "Python", + "lines": 285, + "truncated": false, + "block": 1, + "row": 8386 + }, + { + "path": "tests/test_adpbulk.py", + "sha256": "00eefd9ec115c0652bbbf59ab3a43f934ea5ce4312dfad5d767e3d344e51bbca", + "language": "Python", + "lines": 214, + "truncated": false, + "block": 1, + "row": 7651 + } + ] +} \ No newline at end of file diff --git a/manifests/7c/github.com__allenneuraldynamics__aind-ephys-hybrid-evaluation.json b/manifests/7c/github.com__allenneuraldynamics__aind-ephys-hybrid-evaluation.json new file mode 100644 index 0000000000000000000000000000000000000000..ea3accd2a3fdf6cf17d2a51e17bba82c8deb79f7 --- /dev/null +++ b/manifests/7c/github.com__allenneuraldynamics__aind-ephys-hybrid-evaluation.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/allenneuraldynamics/aind-ephys-hybrid-evaluation", + "url": "https://github.com/AllenNeuralDynamics/aind-ephys-hybrid-evaluation", + "host": "github.com", + "commit": "2fe10768f43d2c88d6f82476494a4cb4f8573961", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "d7609c858f47823b9d7cee46253bffc40e93fd55effa744aa249e97a603c65cb", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1139 + }, + { + "path": "README.md", + "sha256": "0eeda77bedf3a3c49d51cce2a6010cfb3e42c969d85596c9742593749854fc97", + "language": "Text", + "lines": 29, + "truncated": false, + "block": 2, + "row": 2603 + }, + { + "path": "code/run_capsule.py", + "sha256": "89b29f3cd8f6c79ca2e3841eb5bb6a88ba094d7d3b243d70bcbb262edbe7ffdd", + "language": "Python", + "lines": 785, + "truncated": false, + "block": 2, + "row": 2220 + } + ] +} \ No newline at end of file diff --git a/manifests/7c/github.com__allenneuraldynamics__aind-ephys-results-collector.json b/manifests/7c/github.com__allenneuraldynamics__aind-ephys-results-collector.json new file mode 100644 index 0000000000000000000000000000000000000000..29075a8d214861ade517f78d1912f2a87f65e0ab --- /dev/null +++ b/manifests/7c/github.com__allenneuraldynamics__aind-ephys-results-collector.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/allenneuraldynamics/aind-ephys-results-collector", + "url": "https://github.com/AllenNeuralDynamics/aind-ephys-results-collector", + "host": "github.com", + "commit": "e4d8821b7585a96314e2a1323ff22b5e9aef0158", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "d7609c858f47823b9d7cee46253bffc40e93fd55effa744aa249e97a603c65cb", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1139 + }, + { + "path": "README.md", + "sha256": "e0eb9eb868d6a16390b7c4a0d24b2da49de7d0161b225ec68d693cc64474dbe7", + "language": "Text", + "lines": 42, + "truncated": false, + "block": 2, + "row": 2614 + }, + { + "path": "code/run_capsule.py", + "sha256": "8704282277bbe17f5a24f498c8dcbec8a02d2906212c6c11203b341aa6217ed1", + "language": "Python", + "lines": 575, + "truncated": false, + "block": 2, + "row": 2190 + } + ] +} \ No newline at end of file diff --git a/manifests/7c/github.com__ottaviadipasquale__react-fmri.json b/manifests/7c/github.com__ottaviadipasquale__react-fmri.json new file mode 100644 index 0000000000000000000000000000000000000000..580e9cb6de0e7a09ee845a3216a04e0e277fb029 --- /dev/null +++ b/manifests/7c/github.com__ottaviadipasquale__react-fmri.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ottaviadipasquale/react-fmri", + "url": "https://github.com/ottaviadipasquale/react-fmri", + "host": "github.com", + "commit": "48462c0a94e8cc0db9625742b3d9c4054bd8ab79", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "d3fb8ef0d2c7723613bd0d1c572b605a0e51c02b35c375c1ee31bfd331a5f627", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2156 + }, + { + "path": "README.md", + "sha256": "3e2e8b5cbd0993aa99076af66ea4591deff68be57a7d8a91b40ed455327c66e8", + "language": "Text", + "lines": 230, + "truncated": false, + "block": 1, + "row": 11973 + }, + { + "path": "react/__init__.py", + "sha256": "5aaac46ce3ebaa3bda791130b639c93060012d929115381b21cbf943f669bf4e", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 1, + "row": 5060 + }, + { + "path": "react/utils.py", + "sha256": "2d23e747c24e2a3dabc1c65ef8c288f4650141bd2283ffa0e7b79328b73a6f74", + "language": "Python", + "lines": 115, + "truncated": false, + "block": 1, + "row": 7094 + }, + { + "path": "setup.py", + "sha256": "1c9941e94e651e7c2e19b621f681ea0720f607e3b1167b7aaf1c3f0d17182c1a", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 1, + "row": 6162 + } + ] +} \ No newline at end of file diff --git a/manifests/7d/github.com__danihae__bio-image-unet.json b/manifests/7d/github.com__danihae__bio-image-unet.json new file mode 100644 index 0000000000000000000000000000000000000000..bdef65828697b45cbabd8648b676c68627375f3d --- /dev/null +++ b/manifests/7d/github.com__danihae__bio-image-unet.json @@ -0,0 +1,579 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/danihae/bio-image-unet", + "url": "https://github.com/danihae/bio-image-unet", + "host": "github.com", + "commit": "ec8a04a93849963e3c76a64f538dc1761ce79b63", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "6cdbd34c68071fcc5379d14e5c3b00b1ccdd2ff8e21a9d89efe0227fabaa62b7", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2139 + }, + { + "path": "README.md", + "sha256": "a04d22e84db243d109b7898ab98c3d0100efb9038e8e537d9035be9340906f10", + "language": "Text", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11783 + }, + { + "path": "bio_image_unet/__init__.py", + "sha256": "3e70543cc5fc550f35234fc60ba34b9af85d390296506354d944796b4e540a82", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 1, + "row": 5020 + }, + { + "path": "bio_image_unet/multi_output_unet/__init__.py", + "sha256": "38e999a2dfe569cd5a7058a800fa8ade0492335c1d64a99ed008392c7061dac3", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 1, + "row": 5282 + }, + { + "path": "bio_image_unet/multi_output_unet/data.py", + "sha256": "fce72fa2f81e0d5a126d72e08dbcc9e08a467233ea3a54e8c35d1ad3ff21b03a", + "language": "Python", + "lines": 349, + "truncated": false, + "block": 1, + "row": 9048 + }, + { + "path": "bio_image_unet/multi_output_unet/losses.py", + "sha256": "5ff3072c3fb908f47686bd49f1010f91f2049410d631e8bcb8d4c2af137f313e", + "language": "Python", + "lines": 189, + "truncated": false, + "block": 1, + "row": 7810 + }, + { + "path": "bio_image_unet/multi_output_unet/multi_output_nested_unet.py", + "sha256": "19c9e47e48629e8aa8dd0ec4ef06d3f9c1f08cf20d60f35b79ee4f1b249c9d83", + "language": "Python", + "lines": 269, + "truncated": false, + "block": 1, + "row": 8923 + }, + { + "path": "bio_image_unet/multi_output_unet/multi_output_unet.py", + "sha256": "93f0c632bf09438b131dbb6f63b3d550c81f94f7823fefb4eed29d50896b994b", + "language": "Python", + "lines": 134, + "truncated": false, + "block": 1, + "row": 7505 + }, + { + "path": "bio_image_unet/multi_output_unet/predict.py", + "sha256": "ad7c51587ab4568365d65e8ab33db7f273448087aa02fe94d4dd156ff24e6834", + "language": "Python", + "lines": 335, + "truncated": false, + "block": 1, + "row": 9124 + }, + { + "path": "bio_image_unet/multi_output_unet/train.py", + "sha256": "19acdb20dd962427ee0cd4f3fe1930d1ab8b37375c2bbbfefa1711378578c883", + "language": "Python", + "lines": 407, + "truncated": false, + "block": 1, + "row": 9245 + }, + { + "path": "bio_image_unet/multi_output_unet3d/__init__.py", + "sha256": "064802ec0564913a840f4274450ab74d97eaef81d7b28f40b37918e7e4c1f774", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 1, + "row": 5220 + }, + { + "path": "bio_image_unet/multi_output_unet3d/data.py", + "sha256": "2d3965505dae781e1161ad20f0d696e8b7c4bf60668b1b654b64f21132126c43", + "language": "Python", + "lines": 267, + "truncated": false, + "block": 1, + "row": 8603 + }, + { + "path": "bio_image_unet/multi_output_unet3d/losses.py", + "sha256": "b2e29d168fb6acd431a0db62ac803bf9c34e041da782dd043975519e9e78956d", + "language": "Python", + "lines": 298, + "truncated": false, + "block": 1, + "row": 8199 + }, + { + "path": "bio_image_unet/multi_output_unet3d/multi_output_unet3d.py", + "sha256": "d87d34bd43da44f62aa66df1e741d818e667d7265b1fa98a3774baae4d21fa2e", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 1, + "row": 7708 + }, + { + "path": "bio_image_unet/multi_output_unet3d/predict.py", + "sha256": "70bdfe62ba3ed528f23b8283b7d4b6d54736ca92a6f90fc1a0cceb32b319ee32", + "language": "Python", + "lines": 325, + "truncated": false, + "block": 1, + "row": 8977 + }, + { + "path": "bio_image_unet/multi_output_unet3d/train.py", + "sha256": "c4c41f0a40ea30215298daebae29d2eff1ba2b3da1f7347cc3a8cfecafdc4cb5", + "language": "Python", + "lines": 273, + "truncated": false, + "block": 1, + "row": 8683 + }, + { + "path": "bio_image_unet/progress/__init__.py", + "sha256": "db3d9c3473ac74a9574546f1ba93c3ace24ad6b8edde0ade6e541bf68eff9870", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4989 + }, + { + "path": "bio_image_unet/progress/progressnotifier.py", + "sha256": "44f8eb09a21aa3ba636751053619161283ee8b52f04dc50ce3a6a1ce28d25072", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 1, + "row": 7608 + }, + { + "path": "bio_image_unet/siam_unet/__init__.py", + "sha256": "a6094a6be171e2fb0f5dbad68b92736c14193a5c4823b140a29a49ac072cc514", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5460 + }, + { + "path": "bio_image_unet/siam_unet/data.py", + "sha256": "8d8a2af1986c11cf3946f5abe8bf11019b56f1db1d8c30d6d848427512c785a6", + "language": "Python", + "lines": 289, + "truncated": false, + "block": 1, + "row": 8917 + }, + { + "path": "bio_image_unet/siam_unet/helpers/__cpu_count__.py", + "sha256": "78896a49ac400856859b793345e04cbfa5386e5266c08342167cea8db089833d", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 1, + "row": 5126 + }, + { + "path": "bio_image_unet/siam_unet/helpers/__md5sum__.py", + "sha256": "e2c4db7d666e8ab64e0446dc3bd17c2aa3524736b6c2fd2fba9ca5271d30035c", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 1, + "row": 5487 + }, + { + "path": "bio_image_unet/siam_unet/helpers/average_tifs.py", + "sha256": "876077faab9ff39213409f0784cdc893ba74bb19debe9320f530c408c60382e6", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 1, + "row": 5911 + }, + { + "path": "bio_image_unet/siam_unet/helpers/create_pixel_value_histogram.py", + "sha256": "d6aebf820e32905bd4c3489b05a00e1dc612a4633e0dc910200875da3cb7ef7c", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 1, + "row": 6147 + }, + { + "path": "bio_image_unet/siam_unet/helpers/cuda_test.py", + "sha256": "d30239ef35996141e2411d97b2259f80cb2ee7c471435e33ce9627eb3ef63def", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 1, + "row": 5190 + }, + { + "path": "bio_image_unet/siam_unet/helpers/extract_frame_of_movie.py", + "sha256": "98dc8498007cd15759ff24fece9231a6cd4d5816def48ee5cbe858643c27c5ce", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 1, + "row": 5954 + }, + { + "path": "bio_image_unet/siam_unet/helpers/find_frame_of_image.py", + "sha256": "c78f870ffd7f39c2c212822582ef44c35dd0414173dd253e0fc051b2dcd007cf", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 1, + "row": 7349 + }, + { + "path": "bio_image_unet/siam_unet/helpers/generate_plain_image.py", + "sha256": "e1cc150e178e77fb7563934807aeeedc662de70440fcc2a3a8b67337288444af", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 1, + "row": 5520 + }, + { + "path": "bio_image_unet/siam_unet/helpers/generate_siam_unet_input_imgs.py", + "sha256": "bcfc1305f474b8a0b2da8e0f20819803fe7eb103e7bc2ba531d005c3e3575ebf", + "language": "Python", + "lines": 127, + "truncated": false, + "block": 1, + "row": 7462 + }, + { + "path": "bio_image_unet/siam_unet/helpers/low_mem_tif_utils.py", + "sha256": "e726e9d906bd15d809bcf94e93ab8b97079b9d7c4f079ba3cee51b44adcbb0d8", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 1, + "row": 5977 + }, + { + "path": "bio_image_unet/siam_unet/helpers/threshold_images.py", + "sha256": "df038581650b2787e486695aeb08c887ca977d7a61102500b3928efa9128d947", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 1, + "row": 5882 + }, + { + "path": "bio_image_unet/siam_unet/helpers/tif_to_mp4.py", + "sha256": "fb9c93c108ecec6bdf04bb68b63c679e39335ebe707b0abadf2b093921ff4ab8", + "language": "Python", + "lines": 74, + "truncated": false, + "block": 1, + "row": 6845 + }, + { + "path": "bio_image_unet/siam_unet/helpers/util.py", + "sha256": "48860a74f330971fef42decef3496a2acf73b1a94e75aea5071edaa78da1cea6", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 1, + "row": 7101 + }, + { + "path": "bio_image_unet/siam_unet/losses.py", + "sha256": "3345b4f80ef9cebe4ebbb28ae37b787575f4d6ebea74f0fd1c932a35481759e0", + "language": "Python", + "lines": 286, + "truncated": false, + "block": 1, + "row": 8059 + }, + { + "path": "bio_image_unet/siam_unet/predict.py", + "sha256": "6df31180a544a68c93f47b97c5bb28c53054672dc0b6ecccc56dd0e3c59c36a3", + "language": "Python", + "lines": 242, + "truncated": false, + "block": 1, + "row": 8687 + }, + { + "path": "bio_image_unet/siam_unet/siam_unet.py", + "sha256": "3857bc529b36e62ef4ab1f438f7bc560fff8f5b321873da9273e9ea01d1fb632", + "language": "Python", + "lines": 148, + "truncated": false, + "block": 1, + "row": 7639 + }, + { + "path": "bio_image_unet/siam_unet/train.py", + "sha256": "ca3ebe09d428ff638b2930e4f13003239e069aa592afe132e7113b45464c8c6c", + "language": "Python", + "lines": 172, + "truncated": false, + "block": 1, + "row": 8174 + }, + { + "path": "bio_image_unet/unet/__init__.py", + "sha256": "ebda380c8afd228390c1244a01c4ef7e0de0bfb67b2d792347eb945540f5047f", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 1, + "row": 5242 + }, + { + "path": "bio_image_unet/unet/attention_unet.py", + "sha256": "40ffbee67f3526d197a9cdc5e81fcf3b8a1d802a4d10c1ca8c9cda75fc970957", + "language": "Python", + "lines": 181, + "truncated": false, + "block": 1, + "row": 7960 + }, + { + "path": "bio_image_unet/unet/baby_unet.py", + "sha256": "2475fef1e0291548a75e22c8595840ee0a3b36dcafa3a906c789b67d62a36cb5", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 1, + "row": 6943 + }, + { + "path": "bio_image_unet/unet/data.py", + "sha256": "a72b57b46503be12ad615a832fcaac50c32a8f2aaaef9c6c673ff9feb1a5cbac", + "language": "Python", + "lines": 266, + "truncated": false, + "block": 1, + "row": 8774 + }, + { + "path": "bio_image_unet/unet/losses.py", + "sha256": "3e9a4408f501e1697c6d80ae01213dacc032e1b11759c1fc29b8e4d7b80a4d5b", + "language": "Python", + "lines": 240, + "truncated": false, + "block": 1, + "row": 7812 + }, + { + "path": "bio_image_unet/unet/predict.py", + "sha256": "845be56748e0120ddeab72999488de7db85a5084361b0427a531f65146e27800", + "language": "Python", + "lines": 231, + "truncated": false, + "block": 1, + "row": 8577 + }, + { + "path": "bio_image_unet/unet/train.py", + "sha256": "d7c50027d3f12698b19b9956044f881ca84c37727a53116f3bb323ffc1026497", + "language": "Python", + "lines": 198, + "truncated": false, + "block": 1, + "row": 8379 + }, + { + "path": "bio_image_unet/unet/unet.py", + "sha256": "515fa53cf95300c47bfebe3baf474d5b015692037a0d53982d68b6d314d9e950", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 1, + "row": 7230 + }, + { + "path": "bio_image_unet/unet/unet_v0.py", + "sha256": "e3668f55b83c9f12777683cdcb30a28adc2f1469681aeb8c8808d8c3fc1c1de4", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 1, + "row": 7144 + }, + { + "path": "bio_image_unet/unet3d/__init__.py", + "sha256": "23aed6b8c1dac129299a7aafa5120f0460df89224be8ab9c816a6010785e4e5d", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 1, + "row": 5208 + }, + { + "path": "bio_image_unet/unet3d/data.py", + "sha256": "8dd0c69807c70ab27332345533ca798ffa9e864648e64f65e27a77e3036df388", + "language": "Python", + "lines": 260, + "truncated": false, + "block": 1, + "row": 8733 + }, + { + "path": "bio_image_unet/unet3d/losses.py", + "sha256": "60d2c8a752fc7728d1dd10dbea35ecc4245f71c007dcd74344daa00ae30318b7", + "language": "Python", + "lines": 240, + "truncated": false, + "block": 1, + "row": 7815 + }, + { + "path": "bio_image_unet/unet3d/predict.py", + "sha256": "48f23dab7b983e9ae023f72ba6a671182aa403cdc8cad198844776fdb8989d8f", + "language": "Python", + "lines": 197, + "truncated": false, + "block": 1, + "row": 8346 + }, + { + "path": "bio_image_unet/unet3d/train.py", + "sha256": "598b862b8486e2a2a46a22e2d9ad0d55d4a73ad25f0240ba9832e45a5745f2af", + "language": "Python", + "lines": 217, + "truncated": false, + "block": 1, + "row": 8462 + }, + { + "path": "bio_image_unet/unet3d/unet3d.py", + "sha256": "15d514a4a0b0fad0e0a25b5666676c14cb745c48b1e8285256dbe6f600c04236", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 1, + "row": 7102 + }, + { + "path": "bio_image_unet/utils/__init__.py", + "sha256": "6a52031819f1587e09bcff945beecdf7db1e0418b4af5195d61f1fd4444505e7", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4966 + }, + { + "path": "bio_image_unet/utils/image_annotator.py", + "sha256": "7c4d401586022e7b9403724bab911ea57f406b391eaa6220bc5092cb92d097f7", + "language": "Python", + "lines": 162, + "truncated": false, + "block": 1, + "row": 7598 + }, + { + "path": "bio_image_unet/utils/model_cache.py", + "sha256": "025136feead71ea7b185761121e3022d6ca2554da9df186501e70f3f01e8ea6d", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 1, + "row": 7072 + }, + { + "path": "bio_image_unet/utils/test.py", + "sha256": "46a6e8468f204f26b3dad3bbca5515da8679ff46387ed294709dcc2d1e07cc90", + "language": "Python", + "lines": 137, + "truncated": false, + "block": 1, + "row": 7477 + }, + { + "path": "bio_image_unet/utils/tiling.py", + "sha256": "f588c2a1f8f6832bbb60316a18f61b2cbdb4f8afeff3f59a90c18e4638cd1286", + "language": "Python", + "lines": 450, + "truncated": false, + "block": 1, + "row": 9237 + }, + { + "path": "bio_image_unet/utils/utils.py", + "sha256": "fb58f5ba9a74af175aca94297fab99a100af7fe55e7c844082980de25ba1ba84", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 1, + "row": 6416 + }, + { + "path": "tests/test_package_api.py", + "sha256": "98e4bce530b07a6390071f97ff530524d19e1a0564aa84a86b31967bf6eb1c4d", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 1, + "row": 6720 + }, + { + "path": "tests/test_predict_shapes.py", + "sha256": "27519366d7be45d92bf7209389e352321abe4111f5a1bead1151fb2c5ea3517d", + "language": "Python", + "lines": 245, + "truncated": false, + "block": 1, + "row": 8766 + }, + { + "path": "tests/test_tiling.py", + "sha256": "1bc681d2a9990890c26f9ade6aa82e7792e7552e318bfcf0945ab4137f4f5bc4", + "language": "Python", + "lines": 335, + "truncated": false, + "block": 1, + "row": 9056 + }, + { + "path": "using_siam_unet.ipynb", + "sha256": "7b3125ac43041d925ad5a14e413cf3216a22b901c1e3f84175d19c36648c5b27", + "language": "Jupyter", + "lines": 322, + "truncated": false, + "block": 1, + "row": 1976 + }, + { + "path": "using_unet.ipynb", + "sha256": "721f82d64b70e6f0e253b16e7352ddfbb421a849eea46e9c160d829246078c83", + "language": "Jupyter", + "lines": 210, + "truncated": false, + "block": 1, + "row": 1875 + } + ] +} \ No newline at end of file diff --git a/manifests/7d/github.com__mahamidlab__actin_cortex_analysis.json b/manifests/7d/github.com__mahamidlab__actin_cortex_analysis.json new file mode 100644 index 0000000000000000000000000000000000000000..cb5384cc857c5dc35ef4be49fbabaeb5d10ff705 --- /dev/null +++ b/manifests/7d/github.com__mahamidlab__actin_cortex_analysis.json @@ -0,0 +1,363 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/mahamidlab/actin_cortex_analysis", + "url": "https://github.com/MahamidLab/actin_cortex_analysis/tree/revision", + "host": "github.com", + "commit": "819e80c9f6eaf55845c0cea39303e55339f683f0", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "7872b565f064d20ce4c4bd56690dd8947de13df6a3b78a4793fc84d7dbcfb306", + "language": "Text", + "lines": 19, + "truncated": false, + "block": 1, + "row": 11795 + }, + { + "path": "branch_detection_validation/branch_analysis.ipynb", + "sha256": "11d945ab59fd715e90f10a29aec5d15a956db6d83041cebf3e3c32bec27a0626", + "language": "Jupyter", + "lines": 557, + "truncated": false, + "block": 1, + "row": 2037 + }, + { + "path": "branch_detection_validation/branch_check_daughter_exists.ipynb", + "sha256": "8b8448065ca289eecabc3c1f5d6fb0b39be4b991f9ec572bba37989f92048be8", + "language": "Jupyter", + "lines": 120, + "truncated": false, + "block": 1, + "row": 1797 + }, + { + "path": "branch_detection_validation/branch_check_mother_daughter.ipynb", + "sha256": "f81af80e58937ffebab2d620a3a0f9ecf34e37bcb6d3c097e0e1edf242799a68", + "language": "Jupyter", + "lines": 77, + "truncated": false, + "block": 1, + "row": 1761 + }, + { + "path": "branch_detection_validation/branch_compare.ipynb", + "sha256": "5c031d9db8884db0ac104e22a6433410181adc2ddb206ff6becf6a1dd0fa93ff", + "language": "Jupyter", + "lines": 175, + "truncated": false, + "block": 1, + "row": 1862 + }, + { + "path": "branch_detection_validation/branches_on_filament.ipynb", + "sha256": "390041b1c5201c94e8f498dce4969d82f7ed57ed531bdb65428427e25cebe562", + "language": "Jupyter", + "lines": 207, + "truncated": false, + "block": 1, + "row": 1872 + }, + { + "path": "branch_detection_validation/calculate_local_orientation.ipynb", + "sha256": "cf7fec695b0f9383c2b35facfe0571a149ff416c9500cdd1f672b89b2c5b4f82", + "language": "Jupyter", + "lines": 95, + "truncated": false, + "block": 1, + "row": 1742 + }, + { + "path": "branch_detection_validation/utils.py", + "sha256": "860b3f54640241b47cb0bd6c9ac7b868146e4270b2177df8d2635046a08db6c6", + "language": "Python", + "lines": 452, + "truncated": false, + "block": 1, + "row": 9351 + }, + { + "path": "jupyter_based_processing/R_visualizations/Memb_actin_dist_ang_line_plot.R", + "sha256": "682ea8c7cda8bb16af6aac8df1d1957d2c446c1569c7e7d181da197e14c5c169", + "language": "R", + "lines": 36, + "truncated": false, + "block": 1, + "row": 10045 + }, + { + "path": "jupyter_based_processing/R_visualizations/Memb_actin_dist_plot.R", + "sha256": "c1c2fd6162b65a64fc34c31201090e6b04acfcadf1c85df43eafb5ee1392b794", + "language": "R", + "lines": 62, + "truncated": false, + "block": 1, + "row": 10106 + }, + { + "path": "jupyter_based_processing/R_visualizations/Memb_actin_dist_plot_5_bin.R", + "sha256": "e386547228158198d55c81ceeb0191d7374438ab9f97d8f9e7876f3bf4bec3ab", + "language": "R", + "lines": 60, + "truncated": false, + "block": 1, + "row": 10100 + }, + { + "path": "jupyter_based_processing/R_visualizations/Plot_branches.R", + "sha256": "b5ef856309d4bc341eeeb264bee57785012fc3327d8d62b0bdb7870b6623fb08", + "language": "R", + "lines": 171, + "truncated": false, + "block": 1, + "row": 10331 + }, + { + "path": "jupyter_based_processing/R_visualizations/Plot_bundles.R", + "sha256": "8eb570acaf226b0f58cdf7cece808dd960897fdfef0a943d514c622b91f8d415", + "language": "R", + "lines": 173, + "truncated": false, + "block": 1, + "row": 10329 + }, + { + "path": "jupyter_based_processing/R_visualizations/R_plots_from_tomogram_summary.R", + "sha256": "11decb98b5954c78351f2ef0ffff86420614d0fe4cfbcc211e2e3f2529cc7f61", + "language": "R", + "lines": 189, + "truncated": false, + "block": 1, + "row": 10336 + }, + { + "path": "jupyter_based_processing/R_visualizations/actin_amount_plot.R", + "sha256": "1d2f7cb917e3880508f9793a1471c243872d3478754a1147933e82a86c2863a3", + "language": "R", + "lines": 139, + "truncated": false, + "block": 1, + "row": 10219 + }, + { + "path": "jupyter_based_processing/R_visualizations/actin_dist_ang_histogram.R", + "sha256": "f9a9bbe1f3a1be6ac12f825c90be23577a52c209a5b70611dcaf4f773967eaf4", + "language": "R", + "lines": 20, + "truncated": false, + "block": 1, + "row": 10025 + }, + { + "path": "jupyter_based_processing/R_visualizations/individual_cell_memb_actin_dist_plot.R", + "sha256": "b66bb56ecf728034af07927572811da6b9eee6480a6afa5c32ebc89d138a1d7e", + "language": "R", + "lines": 32, + "truncated": false, + "block": 1, + "row": 10050 + }, + { + "path": "jupyter_based_processing/branch_analysis/branch_analysis.ipynb", + "sha256": "17232115e8bbc55bd69373cc9818ada1290e2fae8509e864cdccb97024226805", + "language": "Jupyter", + "lines": 320, + "truncated": false, + "block": 1, + "row": 1972 + }, + { + "path": "jupyter_based_processing/bundle_analysis/bundle_analysis.ipynb", + "sha256": "4b5d30d00b396ea331a9efd502b8d6bf01389e5ed00334f97f3729f608cad4c4", + "language": "Jupyter", + "lines": 268, + "truncated": false, + "block": 1, + "row": 1932 + }, + { + "path": "jupyter_based_processing/bundle_analysis/bundle_identification.ipynb", + "sha256": "ac51b7a942de891565d8697d20778250da38d439b51970c3c36b8bc00cb8254f", + "language": "Jupyter", + "lines": 128, + "truncated": false, + "block": 1, + "row": 1826 + }, + { + "path": "jupyter_based_processing/filament_segmentation_to_coordinates/cluster_python/filament_segmentation_to_coordinates.py", + "sha256": "59e8218ffbdb1021ede0ca01b78c7ea0948f6d6edca294bf12e5423fbba2491c", + "language": "Python", + "lines": 153, + "truncated": false, + "block": 1, + "row": 8178 + }, + { + "path": "jupyter_based_processing/filament_segmentation_to_coordinates/cluster_python/filament_segmentation_to_coordinates.sh", + "sha256": "e69263f9f693f908392ef6930358e93fd8ff811efd30b15b2ad700c953959672", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11395 + }, + { + "path": "jupyter_based_processing/filament_segmentation_to_coordinates/cluster_python/utils.py", + "sha256": "aedd8170ebfd72a54de9fd0432c19546a5024607584dd9fd31171dcbc2b1fe98", + "language": "Python", + "lines": 478, + "truncated": false, + "block": 1, + "row": 9417 + }, + { + "path": "jupyter_based_processing/filament_segmentation_to_coordinates/jupyter/filament_segmentation_to_coordinates.ipynb", + "sha256": "8da6db57257caf3fb749ae6e887a254537213a305e01dea8944117ac30dbfa67", + "language": "Jupyter", + "lines": 147, + "truncated": false, + "block": 1, + "row": 1846 + }, + { + "path": "jupyter_based_processing/filament_segmentation_to_coordinates/jupyter/utils.py", + "sha256": "aedd8170ebfd72a54de9fd0432c19546a5024607584dd9fd31171dcbc2b1fe98", + "language": "Python", + "lines": 478, + "truncated": false, + "block": 1, + "row": 9417 + }, + { + "path": "jupyter_based_processing/local_orientation/calculate_local_orientation.ipynb", + "sha256": "8773ad3486d4068dde39a13c2f15e87ad4dd93f04793336fda4036a7c935e71b", + "language": "Jupyter", + "lines": 67, + "truncated": false, + "block": 1, + "row": 1709 + }, + { + "path": "jupyter_based_processing/memb_fil_angle/memb_fil_angle.ipynb", + "sha256": "7f413c388947b866373d0ff917de15c7694cb3ae04b078a9770bccc1da379c62", + "language": "Jupyter", + "lines": 147, + "truncated": false, + "block": 1, + "row": 1855 + }, + { + "path": "jupyter_based_processing/memb_fil_distance/memb_fil_distance.ipynb", + "sha256": "48bd5e1eee9110ac455a962de63b046812fd65167ff54f06967636fd2d6ee8a8", + "language": "Jupyter", + "lines": 282, + "truncated": false, + "block": 1, + "row": 1951 + }, + { + "path": "jupyter_based_processing/memb_surface_area_calculation/memb_area_calc.m", + "sha256": "7250053cda46bc1ee45a427b6ce95dbc010e833113a9dcf6db451be278bcec87", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 1, + "row": 3101 + }, + { + "path": "jupyter_based_processing/misc_functions/misc_functions.ipynb", + "sha256": "05a88c6808c7771bea1faed3c4e697867919db5a9f24482b1d9dbd294c51edc2", + "language": "Jupyter", + "lines": 253, + "truncated": false, + "block": 1, + "row": 1931 + }, + { + "path": "jupyter_based_processing/old_code/Organize_data.ipynb", + "sha256": "46f45d956e8157c6ceef90be9f1428cce5b8e1a56f747c5257621206a15157c3", + "language": "Jupyter", + "lines": 465, + "truncated": false, + "block": 1, + "row": 2033 + }, + { + "path": "jupyter_based_processing/old_code/actin_analysis_pipeline.ipynb", + "sha256": "50cf49dc1876adcfa5ae71ec131dc95b8bba620e9ea104e92bc90126bee68dd1", + "language": "Jupyter", + "lines": 2290, + "truncated": false, + "block": 1, + "row": 2060 + }, + { + "path": "jupyter_based_processing/separation_by_cell/jupyter/separation_by_cell.ipynb", + "sha256": "c93ab3e2e9bcc8fa6ca93157d46f73674b57eb347ec16f660424381a45308fa4", + "language": "Jupyter", + "lines": 227, + "truncated": false, + "block": 1, + "row": 1900 + }, + { + "path": "jupyter_based_processing/separation_by_cell/jupyter/utils.py", + "sha256": "aedd8170ebfd72a54de9fd0432c19546a5024607584dd9fd31171dcbc2b1fe98", + "language": "Python", + "lines": 478, + "truncated": false, + "block": 1, + "row": 9417 + }, + { + "path": "jupyter_based_processing/separation_by_cell/python_cluster/quality_check_and_reindexing.py", + "sha256": "fe5b1a74335c8e06ca24ab152bed85e24a5afb175a4a91cf51214a713682b856", + "language": "Python", + "lines": 137, + "truncated": false, + "block": 1, + "row": 7666 + }, + { + "path": "jupyter_based_processing/separation_by_cell/python_cluster/separation_by_cell.py", + "sha256": "84fe93fa8979e07d4a7e14817d50c3a51342a918693c9c8540782a7f80dd3753", + "language": "Python", + "lines": 183, + "truncated": false, + "block": 1, + "row": 8130 + }, + { + "path": "jupyter_based_processing/separation_by_cell/python_cluster/utils.py", + "sha256": "aedd8170ebfd72a54de9fd0432c19546a5024607584dd9fd31171dcbc2b1fe98", + "language": "Python", + "lines": 478, + "truncated": false, + "block": 1, + "row": 9417 + }, + { + "path": "jupyter_based_processing/setup.py", + "sha256": "9bb48a2d7259ff148297d3247c68c9d88c5171298e69e418d45ae831823ea86c", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 1, + "row": 5284 + } + ] +} \ No newline at end of file diff --git a/manifests/7e/github.com__allenneuraldynamics__aind-ephys-hybrid-benchmark.json b/manifests/7e/github.com__allenneuraldynamics__aind-ephys-hybrid-benchmark.json new file mode 100644 index 0000000000000000000000000000000000000000..6668e5023bbfe026d0468d5817d38a599cc83c6c --- /dev/null +++ b/manifests/7e/github.com__allenneuraldynamics__aind-ephys-hybrid-benchmark.json @@ -0,0 +1,75 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/allenneuraldynamics/aind-ephys-hybrid-benchmark", + "url": "https://github.com/AllenNeuralDynamics/aind-ephys-hybrid-benchmark", + "host": "github.com", + "commit": "5c0c61df4eaf94f59a1c5be8d0d9f9dc458ea1af", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "d7609c858f47823b9d7cee46253bffc40e93fd55effa744aa249e97a603c65cb", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1139 + }, + { + "path": "README.md", + "sha256": "bc0867629059ff766223535a51c6728ff623fafbac747f292252bcfe0b69736b", + "language": "Text", + "lines": 264, + "truncated": false, + "block": 2, + "row": 2654 + }, + { + "path": "pipeline/slurm_submit_sorters.sh", + "sha256": "b38402f379d5d39756a601ed655654111c0d8d969ce5b0cb162b5d84aa613445", + "language": "Shell", + "lines": 30, + "truncated": false, + "block": 2, + "row": 2518 + }, + { + "path": "pull_pipeline_images.sh", + "sha256": "f6e1d1adb3ec57975da207ea6d578e1683bf938c53cb7a4aeb6cbe78b9c4cc6c", + "language": "Shell", + "lines": 119, + "truncated": false, + "block": 2, + "row": 2567 + }, + { + "path": "sample_dataset/create_test_nwb.py", + "sha256": "a1af4d73522fb1b91e1e10e2da72e965048bc7a70a93d1308d9a67fc25d3b60d", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 2, + "row": 1787 + }, + { + "path": "tests/test_pipeline_lossy.sh", + "sha256": "b8b2eea3c94f11420aa733144d1715de1f84e0cfe06b406293594ccbb5f16a2c", + "language": "Shell", + "lines": 36, + "truncated": false, + "block": 2, + "row": 2528 + }, + { + "path": "tests/test_pipeline_sorters.sh", + "sha256": "2f0820a5808c2957644f0a7b51edc68a25909212c000de6d5d311abba12c5177", + "language": "Shell", + "lines": 36, + "truncated": false, + "block": 2, + "row": 2530 + } + ] +} \ No newline at end of file diff --git a/manifests/7e/github.com__allenneuraldynamics__aind-ephys-pipeline.json b/manifests/7e/github.com__allenneuraldynamics__aind-ephys-pipeline.json new file mode 100644 index 0000000000000000000000000000000000000000..ead9dfaf3cce57778d7c3cccfc5c437ec2df4046 --- /dev/null +++ b/manifests/7e/github.com__allenneuraldynamics__aind-ephys-pipeline.json @@ -0,0 +1,174 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/allenneuraldynamics/aind-ephys-pipeline", + "url": "https://github.com/AllenNeuralDynamics/aind-ephys-pipeline", + "host": "github.com", + "commit": "80b38febf7807ecc97614952ae72412209fca43a", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "d7609c858f47823b9d7cee46253bffc40e93fd55effa744aa249e97a603c65cb", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1139 + }, + { + "path": "README.md", + "sha256": "f04cadc6f12d348a911dff00d7e83c7ce7d5b58961a0ce3ea563c11f7ba22b2e", + "language": "Text", + "lines": 93, + "truncated": false, + "block": 2, + "row": 2637 + }, + { + "path": "docs/source/conf.py", + "sha256": "61ff3f71b472e6302acc5555dbb156b0a58b0c503c9a752aed1959b68059c7e9", + "language": "Python", + "lines": 75, + "truncated": false, + "block": 2, + "row": 1789 + }, + { + "path": "environment/build_all.sh", + "sha256": "fea34cc45337f669259d9a56bdf817174e8ac69cf93475a48d4e958d68d6fc5a", + "language": "Shell", + "lines": 21, + "truncated": false, + "block": 2, + "row": 2522 + }, + { + "path": "environment/push_all.sh", + "sha256": "3e94b9062bf02a682336f5dbeb93b86c5d4e4e189a316a3b23fa3cfdfd1b7fc4", + "language": "Shell", + "lines": 28, + "truncated": false, + "block": 2, + "row": 2541 + }, + { + "path": "params_app/ajv7.min.js", + "sha256": "dc1325168ae9730198c20f5ffd55ed2fee9dca67014589ead7c6871e65521439", + "language": "JavaScript", + "lines": 9, + "truncated": false, + "block": 2, + "row": 919 + }, + { + "path": "params_app/app.js", + "sha256": "a59150dfe303fd80cae2e2a2915f4aa58a390eabd4ac2483897136ff593306d4", + "language": "JavaScript", + "lines": 437, + "truncated": false, + "block": 2, + "row": 915 + }, + { + "path": "params_app/serve.py", + "sha256": "12418d0c4bffab94bc2a37446ebb8c5febfbeee99788ed66d19ac13d5bd5ab67", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 2, + "row": 1693 + }, + { + "path": "pipeline/slurm_submit.sh", + "sha256": "584e7d65b291b8b49e7d6ed173c01b4ff638b7f0952177546b6dfebf68d64601", + "language": "Shell", + "lines": 30, + "truncated": false, + "block": 2, + "row": 2519 + }, + { + "path": "pull_pipeline_images.sh", + "sha256": "228b5bbe7f0d85630c985145e329a5f3182abddbc5049ca8fc3e991d0c9a1853", + "language": "Shell", + "lines": 118, + "truncated": false, + "block": 2, + "row": 2566 + }, + { + "path": "sample_dataset/create_test_nwb.py", + "sha256": "b74d502f91031a084be28fc841abeb4cdf7432c8895639b04374dcfe68edcf57", + "language": "Python", + "lines": 153, + "truncated": false, + "block": 2, + "row": 1936 + }, + { + "path": "sample_dataset/create_test_spikeinterface.py", + "sha256": "668eb5165ceb4c44c57a234ad5abd1a727092403486992faaf444ab35cc8a6b7", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 2, + "row": 1797 + }, + { + "path": "tests/check_pipeline_results.py", + "sha256": "f859988e69256d8146f535731c6eee05b58692e3cf3753565c336926dbc753bf", + "language": "Python", + "lines": 396, + "truncated": false, + "block": 2, + "row": 2154 + }, + { + "path": "tests/check_sorter_params.py", + "sha256": "a57d02f4419070eaf2924e450a1f6822eb0dceb8cc1e4f061a7e6783b83689a8", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 2, + "row": 1838 + }, + { + "path": "tests/test_pipeline_local_nwb.sh", + "sha256": "b2b8925245b534a9eacbb8029495f7113e68bd208440f3614abb80f659f17cb1", + "language": "Shell", + "lines": 65, + "truncated": false, + "block": 2, + "row": 2558 + }, + { + "path": "tests/test_pipeline_local_si.sh", + "sha256": "3e1483fe652319b2aeab51be2fa79cb9430b8771f4b3be8678bda487589e416a", + "language": "Shell", + "lines": 47, + "truncated": false, + "block": 2, + "row": 2540 + }, + { + "path": "tests/test_pipeline_slurm.sh", + "sha256": "6924bc7b28f43216fc26fcef6c69fefc31078f1ae8921a567c7d7a41bee8d2c6", + "language": "Shell", + "lines": 71, + "truncated": false, + "block": 2, + "row": 2556 + }, + { + "path": "tests/validate_params.py", + "sha256": "a7b05b2714d35b384f70028c7ed4709a458ff38e7493df4d1e9b43033483a878", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 2, + "row": 1684 + } + ] +} \ No newline at end of file diff --git a/manifests/7e/github.com__bikoff-lab__v1_ko_analysis.json b/manifests/7e/github.com__bikoff-lab__v1_ko_analysis.json new file mode 100644 index 0000000000000000000000000000000000000000..87da703b94baac311fc19958d6c884389db2b44b --- /dev/null +++ b/manifests/7e/github.com__bikoff-lab__v1_ko_analysis.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/bikoff-lab/v1_ko_analysis", + "url": "https://github.com/Bikoff-Lab/V1_KO_analysis", + "host": "github.com", + "commit": "b6e8214879b477eaa7f784633160005cbb8a909b", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "01_cellranger/CellRangerAutoScriptGFP.py", + "sha256": "f22d63f17db58450b48fc255a13249a2d463ffa7e36c44b68903aa3be76113c1", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 2, + "row": 1736 + }, + { + "path": "02_Data_Processing/Code_Replicate1.py", + "sha256": "47e0ac4ebb32922f463f854c0d10723a2934067ee6b536332009fe4b8191b64d", + "language": "Python", + "lines": 543, + "truncated": false, + "block": 2, + "row": 2146 + }, + { + "path": "02_Data_Processing/Code_Replicate2.py", + "sha256": "a18cf59482f649e0d7e4a1778a3f37f23dcf49a0b7c8a372f53bb0e8774e6c61", + "language": "Python", + "lines": 517, + "truncated": false, + "block": 2, + "row": 2148 + }, + { + "path": "LICENSE", + "sha256": "3ab74c544cffa1e972a55a72e52b142d2699955327da901d70936673371a56a7", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1123 + }, + { + "path": "README.md", + "sha256": "84746c9aad183b8b3270337c5337c571b3e4cb902bdb426f8fabeed7ea8f662c", + "language": "Text", + "lines": 132, + "truncated": false, + "block": 2, + "row": 2635 + } + ] +} \ No newline at end of file diff --git a/manifests/7e/zenodo__12774305.json b/manifests/7e/zenodo__12774305.json new file mode 100644 index 0000000000000000000000000000000000000000..49d7c65aa84979f99648faabc4d69962070ea18f --- /dev/null +++ b/manifests/7e/zenodo__12774305.json @@ -0,0 +1,354 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:12774305", + "url": "10.5281/zenodo.12774305", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file LICENSE.md", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.md", + "sha256": "81c17a78bd43f9df592d00dcac53218c936bbcd44a2b130a6108193e93eeb5fe", + "language": "License", + "lines": 7, + "truncated": false, + "block": 1, + "row": 2074 + }, + { + "path": "README.md", + "sha256": "ee6f839ef3885a75edc86328f4dfd7865932f8c2ac411f951aa16f1b2e9ec2e6", + "language": "Text", + "lines": 107, + "truncated": false, + "block": 1, + "row": 11883 + }, + { + "path": "doc/theme/book.js", + "sha256": "51c8bb0d83fb098b48f050fb3fe35db8c6a76b9422bba26987e2b7368cd8c828", + "language": "JavaScript", + "lines": 679, + "truncated": false, + "block": 1, + "row": 1505 + }, + { + "path": "doc/theme/highlight.js", + "sha256": "5a2b5dadd60831dd1f82220223e2ab18e627061912cc89b5c450ab2c8f26ff90", + "language": "JavaScript", + "lines": 6, + "truncated": false, + "block": 1, + "row": 1548 + }, + { + "path": "src/aggregation/compute_aggregation.rs", + "sha256": "f9ab606162d8d70c98ada76c1c726bd20b3c49880857e15ea92b9b7ef2edf5f4", + "language": "Rust", + "lines": 280, + "truncated": false, + "block": 1, + "row": 10912 + }, + { + "path": "src/aggregation/mod.rs", + "sha256": "331664716563d11c7e7da36ddf76fa736f414a69d6311c41dfb07dec64c1a169", + "language": "Rust", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10768 + }, + { + "path": "src/aggregation/results.rs", + "sha256": "372555d649a1f3c8419d26459a020a3672ac8b599c060aa0a39d566e21180306", + "language": "Rust", + "lines": 185, + "truncated": false, + "block": 1, + "row": 10859 + }, + { + "path": "src/aggregation/utils.rs", + "sha256": "f8bfe448732a1efa0b0ccf0096d3a7c20a7ba3af738d4e188519bf9072d975f4", + "language": "Rust", + "lines": 217, + "truncated": false, + "block": 1, + "row": 10913 + }, + { + "path": "src/cli.rs", + "sha256": "767004f947f16d7cb6695aba828147596d6518a9138f58fc3197533a3f8a19af", + "language": "Rust", + "lines": 207, + "truncated": false, + "block": 1, + "row": 10862 + }, + { + "path": "src/differential_expression.rs", + "sha256": "59f38180dfa50eb7ae605cdd88f940fdb93a8155de11a5e16836223fc350bdbe", + "language": "Rust", + "lines": 93, + "truncated": false, + "block": 1, + "row": 10769 + }, + { + "path": "src/enrich/enrichment_testing.rs", + "sha256": "da44834c5f1b2c411b2dd4f13fdbe8cc666f094a3fbd5a9f30ced55b6be6ab06", + "language": "Rust", + "lines": 218, + "truncated": false, + "block": 1, + "row": 10910 + }, + { + "path": "src/enrich/mod.rs", + "sha256": "30339de5726ab9325b7a1a759eb1393b941a32fb6580b792a2557f833cc1ee8e", + "language": "Rust", + "lines": 4, + "truncated": false, + "block": 1, + "row": 10626 + }, + { + "path": "src/enrich/results.rs", + "sha256": "a0ab47f6106eca76801ba434fe9cc49556da10fb14f586d25c2ae1489bc6e754", + "language": "Rust", + "lines": 183, + "truncated": false, + "block": 1, + "row": 10869 + }, + { + "path": "src/io/gene_frame.rs", + "sha256": "aab9004fb4499b9f0fb16aa6e41ab3e68245c828587d43088372ad4825bc3c2a", + "language": "Rust", + "lines": 109, + "truncated": false, + "block": 1, + "row": 10786 + }, + { + "path": "src/io/hit_list.rs", + "sha256": "d73327b061cbaea09848afbb71307ecee0ea8d1e9529b4b53aa69be4738dc4df", + "language": "Rust", + "lines": 205, + "truncated": false, + "block": 1, + "row": 10877 + }, + { + "path": "src/io/mod.rs", + "sha256": "b62541238abba15879d9b55210c84514f0cafc28c4f874c71041f22d25871545", + "language": "Rust", + "lines": 11, + "truncated": false, + "block": 1, + "row": 10636 + }, + { + "path": "src/io/screenviz.rs", + "sha256": "652a73ea8e523c50e65a30329c8915b267137549d0c2b87e6f6a12f3a63f9e1a", + "language": "Rust", + "lines": 351, + "truncated": false, + "block": 1, + "row": 10969 + }, + { + "path": "src/io/sgrna_frame.rs", + "sha256": "cb276e6009453359ae4c6ada86f44f0e1e1eee569b31f178c950abfe1ede627e", + "language": "Rust", + "lines": 106, + "truncated": false, + "block": 1, + "row": 10787 + }, + { + "path": "src/io/simple_frame.rs", + "sha256": "bc9e26c40ffa757e3b44c56ab6532cab4a49b130371ad590af3119345819629c", + "language": "Rust", + "lines": 578, + "truncated": false, + "block": 1, + "row": 11025 + }, + { + "path": "src/main.rs", + "sha256": "e16f2d5ff7fa598b57a8a93f1cbad02f5c913fe220f31b9e0c141f525e6ddad4", + "language": "Rust", + "lines": 205, + "truncated": false, + "block": 1, + "row": 10857 + }, + { + "path": "src/model/logged_ols.rs", + "sha256": "20d55e77122e88b8a12cc5afd8b304ec9f97e42ba410b9206d3636d9b2829ced", + "language": "Rust", + "lines": 199, + "truncated": false, + "block": 1, + "row": 10878 + }, + { + "path": "src/model/math.rs", + "sha256": "aad832c21248350c8b59f9eadb10c23915e27bd4787afddad8b80ea45f243a22", + "language": "Rust", + "lines": 44, + "truncated": false, + "block": 1, + "row": 10676 + }, + { + "path": "src/model/mod.rs", + "sha256": "817a8c15a71202299e4f469fa4307b4311d5495a98fc32775d8d2d13b053e444", + "language": "Rust", + "lines": 28, + "truncated": false, + "block": 1, + "row": 10653 + }, + { + "path": "src/model/model_mean_variance.rs", + "sha256": "22aa54626a9254e69d8c1bc1cc56aee484bed3a0555c8cd60f7b54a83c239bba", + "language": "Rust", + "lines": 27, + "truncated": false, + "block": 1, + "row": 10672 + }, + { + "path": "src/model/ols.rs", + "sha256": "4022456cb8b0e43964a4b853cf092c798e691988f9e95b4818644d9c8f5df7fc", + "language": "Rust", + "lines": 106, + "truncated": false, + "block": 1, + "row": 10770 + }, + { + "path": "src/model/sqmean.rs", + "sha256": "416b92de219bbcfbfada3ef7ce1557ce8ba94bead51385e90ecae6c531483504", + "language": "Rust", + "lines": 28, + "truncated": false, + "block": 1, + "row": 10661 + }, + { + "path": "src/model/wols.rs", + "sha256": "844b2bf42ffbd292ce030ed665e17cdb79d6f854b35a7d05a22a5452b6f1820d", + "language": "Rust", + "lines": 102, + "truncated": false, + "block": 1, + "row": 10765 + }, + { + "path": "src/norm/median_ratio_norm.rs", + "sha256": "c26f9e9871e7f90ce146e58f3314b2a5e82042ecffd953b1cc86f5b246c1e244", + "language": "Rust", + "lines": 83, + "truncated": false, + "block": 1, + "row": 10745 + }, + { + "path": "src/norm/mod.rs", + "sha256": "e05afa7970c6b52f69ec19d3416a7703c03366014c36af52ec2a435b24dfe59d", + "language": "Rust", + "lines": 8, + "truncated": false, + "block": 1, + "row": 10637 + }, + { + "path": "src/norm/normalize_counts.rs", + "sha256": "9fd607330acc5e732602cf8e631b0757765d16000c7d3615c2153dc6be71f159", + "language": "Rust", + "lines": 34, + "truncated": false, + "block": 1, + "row": 10675 + }, + { + "path": "src/norm/total_norm.rs", + "sha256": "b4a7962bd03c35418a959351eca6d2a63fe47334898690149a5b5bab423522d5", + "language": "Rust", + "lines": 43, + "truncated": false, + "block": 1, + "row": 10697 + }, + { + "path": "src/run_aggregation.rs", + "sha256": "63933a893085f3405a6ed1f2bef17b950d54a24db0b30283c045fb66faceea47", + "language": "Rust", + "lines": 60, + "truncated": false, + "block": 1, + "row": 10711 + }, + { + "path": "src/utils/agg.rs", + "sha256": "496ad8ccae7c092b5b96eed3246c8b7192332e5768befdf6618af914dd5187b6", + "language": "Rust", + "lines": 82, + "truncated": false, + "block": 1, + "row": 10737 + }, + { + "path": "src/utils/config.rs", + "sha256": "3e446475643be97fd0e3694f08ea039abb31ddc94a0754f68be098afa39c36ef", + "language": "Rust", + "lines": 150, + "truncated": false, + "block": 1, + "row": 10802 + }, + { + "path": "src/utils/filter.rs", + "sha256": "97fbc34e36e00d02b06c9b30a725570fa5c84f0494c24bfe81a9ba1dd03d73c5", + "language": "Rust", + "lines": 74, + "truncated": false, + "block": 1, + "row": 10733 + }, + { + "path": "src/utils/logging.rs", + "sha256": "7bcdc7856ebf0851de6ac1e9c227ef6a768b617cb8d0d33e0ff02cda4d1badb8", + "language": "Rust", + "lines": 277, + "truncated": false, + "block": 1, + "row": 10942 + }, + { + "path": "src/utils/math.rs", + "sha256": "2e4b6579750ae1ee48455bfeb4828efbc8ddbb4990c3aceb0502763cbbc2af0b", + "language": "Rust", + "lines": 27, + "truncated": false, + "block": 1, + "row": 10664 + }, + { + "path": "src/utils/mod.rs", + "sha256": "784a15102d66049027bcdbdfffc5fc0fb91bb80676f0ebb7369190065621c8eb", + "language": "Rust", + "lines": 19, + "truncated": false, + "block": 1, + "row": 10642 + } + ] +} \ No newline at end of file diff --git a/manifests/80/github.com__allenneuraldynamics__aind-ecephys-nwb.json b/manifests/80/github.com__allenneuraldynamics__aind-ecephys-nwb.json new file mode 100644 index 0000000000000000000000000000000000000000..d39e27628382f07de85d333774959a541cc0c6c4 --- /dev/null +++ b/manifests/80/github.com__allenneuraldynamics__aind-ecephys-nwb.json @@ -0,0 +1,48 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/allenneuraldynamics/aind-ecephys-nwb", + "url": "https://github.com/AllenNeuralDynamics/aind-ecephys-nwb", + "host": "github.com", + "commit": "c5cb3308511f9bb3505806b2a6f34c654715155d", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "d7609c858f47823b9d7cee46253bffc40e93fd55effa744aa249e97a603c65cb", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1139 + }, + { + "path": "README.md", + "sha256": "30ccebafd55a012ec02923649316524c39c410572520c1e0647f5cda12d75045", + "language": "Text", + "lines": 45, + "truncated": false, + "block": 2, + "row": 2618 + }, + { + "path": "code/check-nwb-file.ipynb", + "sha256": "e6bbff57a8f1c97bea93c883cf49e4ce9dda6df648a07629a3121ac57449c0a8", + "language": "Jupyter", + "lines": 48, + "truncated": false, + "block": 2, + "row": 1006 + }, + { + "path": "code/run_capsule.py", + "sha256": "9168d0109f0cd52369f463c7f1f346dba059ea399d56c6e58947b77f49be5aac", + "language": "Python", + "lines": 756, + "truncated": false, + "block": 2, + "row": 2229 + } + ] +} \ No newline at end of file diff --git a/manifests/81/github.com__bodenmillergroup__steinbock.json b/manifests/81/github.com__bodenmillergroup__steinbock.json new file mode 100644 index 0000000000000000000000000000000000000000..62a44d777dde217c6df7d12c0218eee0444c9b98 --- /dev/null +++ b/manifests/81/github.com__bodenmillergroup__steinbock.json @@ -0,0 +1,795 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/bodenmillergroup/steinbock", + "url": "https://github.com/BodenmillerGroup/steinbock", + "host": "github.com", + "commit": "848fc5ed547c5c98f25d69b29b75de9be9824f3c", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "d210115ef8e10bb84299884ddd64d6471dab78d74b946cba60902eeec7243f13", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2164 + }, + { + "path": "README.md", + "sha256": "58c58a7b81da399fa8a13378c7af6dfaa5e9f4c7ee6b2e160d44eae308fc216f", + "language": "Text", + "lines": 31, + "truncated": false, + "block": 1, + "row": 11842 + }, + { + "path": "conftest.py", + "sha256": "2dc5d09af8ff343b1698d6a07f946dd3956e7a12268dd6766c1d3fce792af11f", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 1, + "row": 5730 + }, + { + "path": "entrypoint.sh", + "sha256": "d2d911378ea4859703ee8d7861b8ba3f7840bbce3c6accb5ba75d3d39c074876", + "language": "Shell", + "lines": 3, + "truncated": false, + "block": 1, + "row": 11113 + }, + { + "path": "steinbock/__init__.py", + "sha256": "10bd5eb5a9dc6cda9d6b86ea583cf35901868d5bcf49b0475bfd85cf7515b0e1", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5071 + }, + { + "path": "steinbock/__main__.py", + "sha256": "15ad162f31e407e2cdad365f01fe75d25c0324fecdea0f4c2b01be8f2d285988", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5342 + }, + { + "path": "steinbock/_cli/__init__.py", + "sha256": "9c529b054ccf3e67310972382ade559fce2aeca1fb89d07ef35d849425c22e0b", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5045 + }, + { + "path": "steinbock/_cli/_cli.py", + "sha256": "9d4f0fb5bcae765514eded3ffbfac505c39849cd0b69378c873a927bc7f87d3e", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 1, + "row": 5802 + }, + { + "path": "steinbock/_cli/apps.py", + "sha256": "97641529e6559c4e8795ea383573c3581788d1cbdf9c93dff92bb4c710ed13ee", + "language": "Python", + "lines": 150, + "truncated": false, + "block": 1, + "row": 7267 + }, + { + "path": "steinbock/_cli/utils.py", + "sha256": "c0bb60d5b79c602138be3a181a21c97f9ac9eedfc4a03273c307c2ca5064d506", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 1, + "row": 5692 + }, + { + "path": "steinbock/_cli/visualization.py", + "sha256": "cb2cae0d1bf8982f0fdff74fced185bfcbf227e41f7a1dd8a32421d3fb12caf5", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 1, + "row": 6192 + }, + { + "path": "steinbock/_env.py", + "sha256": "0c9323114850db02d98185fb5b0beedcd1b6925b97737e4f086f3b35042c9d59", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 1, + "row": 6028 + }, + { + "path": "steinbock/_steinbock.py", + "sha256": "62ce0efcdbf70f1577ff96c8822f500472df877c68eaaa05b81804ba54703c54", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 1, + "row": 5094 + }, + { + "path": "steinbock/classification/__init__.py", + "sha256": "996a05db72f2c79948355c49a749b7edd5969b0077aec72d0d2f9c5a74c2bd95", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5084 + }, + { + "path": "steinbock/classification/_classification.py", + "sha256": "8f650e7d87be097308074de37c8410cfd5df2444075923b0370659ded3d0ca42", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 1, + "row": 5090 + }, + { + "path": "steinbock/classification/_cli/__init__.py", + "sha256": "515bca61bbc7afba508eb9aa39cd7aa500c8c3ab2930e7c855343108a8d668a5", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5043 + }, + { + "path": "steinbock/classification/_cli/_cli.py", + "sha256": "02b8c85cb7286eb20945d6f42f8fac9a6883e50119b49e57b6470ca714f5da29", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5221 + }, + { + "path": "steinbock/classification/_cli/ilastik.py", + "sha256": "67755e7e55d3ecdf2542d35ae9a90805e2b216ae6e9b7fee3f69d192a36f0d80", + "language": "Python", + "lines": 343, + "truncated": false, + "block": 1, + "row": 8451 + }, + { + "path": "steinbock/classification/ilastik/__init__.py", + "sha256": "fa24985c4fd66ced9410fad15f2998a056563dbc4b5777fd74cb0dddb81e978c", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 1, + "row": 5736 + }, + { + "path": "steinbock/classification/ilastik/_ilastik.py", + "sha256": "eab121f2acc153285d31c4247027bd6716708412d5cdb09dfc396f586deb051c", + "language": "Python", + "lines": 573, + "truncated": false, + "block": 1, + "row": 9381 + }, + { + "path": "steinbock/export/_cli/__init__.py", + "sha256": "b426dd741ddfe4b3f9e08b68cc45a207b14a1f250ee6059d8572af85de0c3917", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5092 + }, + { + "path": "steinbock/export/_cli/_cli.py", + "sha256": "f03d7cfe710b0ed02c8da5432a1bfdaa3eb9439d3e47ae206bd0f126cadfe970", + "language": "Python", + "lines": 159, + "truncated": false, + "block": 1, + "row": 7425 + }, + { + "path": "steinbock/export/_cli/data.py", + "sha256": "1226bcd0f2707b2ea4a916de43e17ff4bc34964fc930ad0b0d8d7030b04c923c", + "language": "Python", + "lines": 284, + "truncated": false, + "block": 1, + "row": 8424 + }, + { + "path": "steinbock/export/_cli/graphs.py", + "sha256": "8c787863b6cdf6397655d9222819b56e906537d761e78891974a35046555d31f", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 1, + "row": 6415 + }, + { + "path": "steinbock/export/data.py", + "sha256": "e482a5db8c0b530e03854c8174bb9e1f4ba54669c5b14ce40737daa5a0a779ab", + "language": "Python", + "lines": 136, + "truncated": false, + "block": 1, + "row": 7591 + }, + { + "path": "steinbock/export/graphs.py", + "sha256": "fd361fae633bc2b311c074048ad726e0a93f7203db8b68637c5dd51328ab7887", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 1, + "row": 6232 + }, + { + "path": "steinbock/io.py", + "sha256": "d1eb0a45dab87a50166c8acf2229a539af71753a87148bb91f89e00c35b9b9ad", + "language": "Python", + "lines": 379, + "truncated": false, + "block": 1, + "row": 8821 + }, + { + "path": "steinbock/measurement/__init__.py", + "sha256": "6a2044d7e3745b52c6c24b03c971d32d078ac73904fc5150a6fcfd4822f8e105", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5074 + }, + { + "path": "steinbock/measurement/_cli/__init__.py", + "sha256": "95de81cf8a3f705ca558ac566d5faeecd3e589f7060b4c7f0ef808916f43093a", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5040 + }, + { + "path": "steinbock/measurement/_cli/_cli.py", + "sha256": "b73d4087593fb4314feb35ffd9486730f9ed02b3ef32acf723879fea2e20121e", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 1, + "row": 5432 + }, + { + "path": "steinbock/measurement/_cli/cellprofiler.py", + "sha256": "c99fff51d7023137698ec97d599b2dbfe04a9a46e204496ed43bdee70e38ba0d", + "language": "Python", + "lines": 182, + "truncated": false, + "block": 1, + "row": 7453 + }, + { + "path": "steinbock/measurement/_cli/intensities.py", + "sha256": "059727980a7be4698353e28ec71b8b88b68a0a629dd01ba440b466bf1a493d7f", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 1, + "row": 6639 + }, + { + "path": "steinbock/measurement/_cli/neighbors.py", + "sha256": "08f7fd58f56bfb232860b1bbf560c7f40884a25cf4f95df990179ed55d9dbcc2", + "language": "Python", + "lines": 89, + "truncated": false, + "block": 1, + "row": 6479 + }, + { + "path": "steinbock/measurement/_cli/regionprops.py", + "sha256": "5d5f1dbd103af76434e21ea4a94ba58555263432996b0f579d99fe77d997fc4f", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 1, + "row": 6329 + }, + { + "path": "steinbock/measurement/_measurement.py", + "sha256": "c08d75b95565de638e51fd8a91f696e00434d9091a570fa623c208b028ebde75", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 1, + "row": 5085 + }, + { + "path": "steinbock/measurement/cellprofiler/__init__.py", + "sha256": "7639194c1c9e35e94b00de00e7e23e4a4acc285a0a17df3286680c3204ac6edf", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5129 + }, + { + "path": "steinbock/measurement/cellprofiler/_cellprofiler.py", + "sha256": "e990dfee1ea20f1adbfba808613383d2bb6fa69eefc0e0288502ac465aaa0b92", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 1, + "row": 5877 + }, + { + "path": "steinbock/measurement/intensities.py", + "sha256": "3e095acef0cabd5cd3fd29eea92ee9b576a1d2aa5d3196a76bb94f12c0b88601", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 1, + "row": 6318 + }, + { + "path": "steinbock/measurement/neighbors.py", + "sha256": "7d037d5013a68c72afe61c7fa9d49493bdfe88057b100a217beeec7fe2581116", + "language": "Python", + "lines": 200, + "truncated": false, + "block": 1, + "row": 8082 + }, + { + "path": "steinbock/measurement/regionprops.py", + "sha256": "9ea1bcafc592a465ad4da9a122ea59bf6567294d881802270c6d83317d6cf3ff", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 1, + "row": 6115 + }, + { + "path": "steinbock/preprocessing/__init__.py", + "sha256": "7ef0fa37f60cbbfb73f546b064c73aa69f372aa0dd81cf575b06e8eedc540a96", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5080 + }, + { + "path": "steinbock/preprocessing/_cli/__init__.py", + "sha256": "09e4015221d7984ee061755ab78b53c977d47d9124744528de16891c2a49d1ff", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5046 + }, + { + "path": "steinbock/preprocessing/_cli/_cli.py", + "sha256": "207f9eb31e5918d8d4462f44220040dae4f179267534003bf547102c205659db", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 1, + "row": 5351 + }, + { + "path": "steinbock/preprocessing/_cli/external.py", + "sha256": "4f6c4e102e26e697b64792d2812393cc7c2ab5cf2f11f99849e4e51f0cbefe9a", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 1, + "row": 7276 + }, + { + "path": "steinbock/preprocessing/_cli/imc.py", + "sha256": "1635d7b9df11a990e99a2fb1faf4d6a47a0a8fa95175549f8e7ba8044a58538b", + "language": "Python", + "lines": 256, + "truncated": false, + "block": 1, + "row": 7969 + }, + { + "path": "steinbock/preprocessing/_preprocessing.py", + "sha256": "2ca19ffff0889e907795bceb041c6a46746420974fe1d06e68ad17cd742d0a1a", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 1, + "row": 5088 + }, + { + "path": "steinbock/preprocessing/external.py", + "sha256": "5d58bb07225471e4206b7a8619bf5d21f28f279c2a119d0c61e94f67ac4e08f7", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 1, + "row": 6701 + }, + { + "path": "steinbock/preprocessing/imc.py", + "sha256": "07498b01bf2c29b263372a21897f1394b750eb2fc921c526d2f1309c372ccadb", + "language": "Python", + "lines": 493, + "truncated": false, + "block": 1, + "row": 9320 + }, + { + "path": "steinbock/segmentation/__init__.py", + "sha256": "de552fba0b6dfa4341c8b1e377ca7a9dfbab9baab318c157d2279c5f4d78117d", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5076 + }, + { + "path": "steinbock/segmentation/_cli/__init__.py", + "sha256": "931b7d0fa2fa7f67055d92a7dd8fe91bf30ca98158394eb53f86c1899eadf86d", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5039 + }, + { + "path": "steinbock/segmentation/_cli/_cli.py", + "sha256": "4cee2fedddeb50e4710d994007760e62749c3bc624f0ac9717fa4cc095370a98", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 1, + "row": 5444 + }, + { + "path": "steinbock/segmentation/_cli/cellpose.py", + "sha256": "513697adee83829aad6dac520260c0c7ca74ba03fff201808f0c73d3b35e00ee", + "language": "Python", + "lines": 253, + "truncated": false, + "block": 1, + "row": 7719 + }, + { + "path": "steinbock/segmentation/_cli/cellprofiler.py", + "sha256": "81ea9939e2186eecb5c6521ebbf289250ec741f50c1ead5e1efc5f9405881a2b", + "language": "Python", + "lines": 115, + "truncated": false, + "block": 1, + "row": 6849 + }, + { + "path": "steinbock/segmentation/_cli/deepcell.py", + "sha256": "c8dd1ba073ef76eac77324eb5862eb78613e444686d5366d16c733da220e39d1", + "language": "Python", + "lines": 230, + "truncated": false, + "block": 1, + "row": 7814 + }, + { + "path": "steinbock/segmentation/_segmentation.py", + "sha256": "44a705c541a3695dc645082a03916c5670b7eec9bf8a9d4ac589385b6a9127b7", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 1, + "row": 5086 + }, + { + "path": "steinbock/segmentation/cellpose.py", + "sha256": "fe2a277709035a2ff9c3e88bcf0973e287c9dfee23418a82c1b7379e7f04be57", + "language": "Python", + "lines": 122, + "truncated": false, + "block": 1, + "row": 7205 + }, + { + "path": "steinbock/segmentation/cellprofiler/__init__.py", + "sha256": "20850494f69cba5b49298af6666b369c3cefe8f24e1dabbb3e4f925ba1d4ba57", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5131 + }, + { + "path": "steinbock/segmentation/cellprofiler/_cellprofiler.py", + "sha256": "b2318475468c1aed304fecec5efa54dde6f75ef88b3390d5c4e7893693eddb7d", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 1, + "row": 5871 + }, + { + "path": "steinbock/segmentation/deepcell.py", + "sha256": "f72178e107006237b052f94a55d1657198b9c071e7d83dfc97f8b3bb7da707ae", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 1, + "row": 7272 + }, + { + "path": "steinbock/utils/__init__.py", + "sha256": "89c05f283e7ee053c49569aa0ab6c4bc694454b9f5f3a1018be40d9ce8005a81", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5054 + }, + { + "path": "steinbock/utils/_cli/__init__.py", + "sha256": "272eb4a82f230135c8857e72687f15f66da8ccbde3fa3437402facc3a95da86d", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5033 + }, + { + "path": "steinbock/utils/_cli/_cli.py", + "sha256": "6caf7f2c6a5aa20c8897462b9db03e1ad7153bfc7880f41ec12e146c79260a0d", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5318 + }, + { + "path": "steinbock/utils/_cli/expansion.py", + "sha256": "0bc3277cdd01f9d3b5b9fc8163f7dc48a7284dcbd27f7b9cfb161be95025a1e1", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 1, + "row": 6022 + }, + { + "path": "steinbock/utils/_cli/matching.py", + "sha256": "e73a2a5ca99b5c6e9e1c460706819c619e29480e438bd3a0860294ac9c72a068", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 1, + "row": 6085 + }, + { + "path": "steinbock/utils/_cli/mosaics.py", + "sha256": "851d35947b35905615bf6fd2fd3a4ce7cb4d7a352a85c9324c3c10c5dcf3b306", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 1, + "row": 6640 + }, + { + "path": "steinbock/utils/_utils.py", + "sha256": "a8b08120b26e5c9f77152a975c8c079e9c87bd242cdf61fb9461e8ca06339c72", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 1, + "row": 5078 + }, + { + "path": "steinbock/utils/expansion.py", + "sha256": "c7a7505859c88766366a44688e26be85469fd4143610309ab24450b9025a73be", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 1, + "row": 5572 + }, + { + "path": "steinbock/utils/matching.py", + "sha256": "1316e93294cc61150a3536dbf8d729bb54fec4aae56db2b9872a5664fe8e970b", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 1, + "row": 6135 + }, + { + "path": "steinbock/utils/mosaics.py", + "sha256": "aadf47e585140b3c69462eebe3a8c934a42b0139f184e2fda79f8ff4d8a398f0", + "language": "Python", + "lines": 125, + "truncated": false, + "block": 1, + "row": 7287 + }, + { + "path": "steinbock/visualization.py", + "sha256": "a13d5aea2c4dd78acdf61ff4a0dcd4c01833d634d1c8c0d80484c627c0d71b7d", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 1, + "row": 5768 + }, + { + "path": "tests/classification/test_ilastik_classification.py", + "sha256": "952c9032a8fd15bde9add3c8981b7c5c76d3db86f43621f741d2d603528c8042", + "language": "Python", + "lines": 180, + "truncated": false, + "block": 1, + "row": 7656 + }, + { + "path": "tests/export/test_data_export.py", + "sha256": "6ad24fab025633ebb85bd7764659a27ed2dc1720c94176b8671adf5ae6c1a270", + "language": "Python", + "lines": 48, + "truncated": false, + "block": 1, + "row": 6040 + }, + { + "path": "tests/export/test_graphs_export.py", + "sha256": "0bd13cc682bb0b3729eb1caa0c34b4d2f998adb522546033ae4a162ca98b6d30", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 1, + "row": 5949 + }, + { + "path": "tests/measurement/test_cellprofiler_measurement.py", + "sha256": "60cbf34994ca460e25f65bd226764374af05bf555aea6423beee47f0e1d9f465", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 1, + "row": 5748 + }, + { + "path": "tests/measurement/test_intensities_measurement.py", + "sha256": "09075d3b742490f91a74a097843fdd4edca18956b8a5e2d1e0c526ef01ddc07a", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 1, + "row": 6193 + }, + { + "path": "tests/measurement/test_neighbors_measurement.py", + "sha256": "21c436c6be307dca8744e5129164ec3f40d47a0410109025918277acc59719be", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 1, + "row": 6216 + }, + { + "path": "tests/measurement/test_regionprops_measurement.py", + "sha256": "f24a2e4a09bb9c3df04df60869ed6657defd7693ca7911de6d4d8947e69bc78d", + "language": "Python", + "lines": 47, + "truncated": false, + "block": 1, + "row": 5905 + }, + { + "path": "tests/preprocessing/test_external_preprocessing.py", + "sha256": "86e657dd03acbf33daba1f2529bee34efb41522b3d3fc19b938b46281f6d0844", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 1, + "row": 5174 + }, + { + "path": "tests/preprocessing/test_imc_preprocessing.py", + "sha256": "0f934cf5654156045913fdd2ba6b02db002d55dc35b0d16495f776d7873c55c5", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 1, + "row": 6865 + }, + { + "path": "tests/segmentation/test_cellpose_segmentation.py", + "sha256": "3ca191f71028529faaa9d519d747bf639cb1bbc134dd9e3e288e157611123913", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 1, + "row": 5375 + }, + { + "path": "tests/segmentation/test_cellprofiler_segmentation.py", + "sha256": "29f22f59ec7637b8c288cef813175f760b29133b31165b3b858987234331d62c", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 1, + "row": 5739 + }, + { + "path": "tests/segmentation/test_deepcell_segmentation.py", + "sha256": "54b5814351472796635c5ece98008555aa76e3c22b09a9850af130ab2027e924", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 1, + "row": 5874 + }, + { + "path": "tests/test_io.py", + "sha256": "191b7a2610e200a4ed6bc487615e76e0293997bc03d76fa8acd09537d15c6c80", + "language": "Python", + "lines": 61, + "truncated": false, + "block": 1, + "row": 6426 + }, + { + "path": "tests/test_viewer.py", + "sha256": "52d58aea563f4ed20a84bea81854311a8bc9f825ae5aec3638cc3ad8ef05d702", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 1, + "row": 5098 + }, + { + "path": "tests/utils/test_expansion_utils.py", + "sha256": "e95fb2e1122676138c5eb6e45d76bc42e211cb19199b5daf9a8cb4f2d2ca3275", + "language": "Python", + "lines": 9, + "truncated": false, + "block": 1, + "row": 5179 + }, + { + "path": "tests/utils/test_matching_utils.py", + "sha256": "4ad2c16775e5954331c4ba96b7127e25054f422ed45fa4bae16fa13f6c7c5901", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 1, + "row": 5722 + }, + { + "path": "tests/utils/test_mosaics_utils.py", + "sha256": "3ddda2bd53827e802fa8e770dbea9e0146d090c42bf5ea4d02ec5ee95f27ad07", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 1, + "row": 6128 + } + ] +} \ No newline at end of file diff --git a/manifests/81/github.com__noamteyssier__cshift.json b/manifests/81/github.com__noamteyssier__cshift.json new file mode 100644 index 0000000000000000000000000000000000000000..f606f60911233f6bfa3a370589fa94bc9626ddd6 --- /dev/null +++ b/manifests/81/github.com__noamteyssier__cshift.json @@ -0,0 +1,84 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/noamteyssier/cshift", + "url": "https://github.com/noamteyssier/cshift", + "host": "github.com", + "commit": "f2322154b73ed907c03215ea5ba898f5a3abdd57", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "bb46271317784b53c904de34e5dbdd5cf8a5908110b5564ff283840e6252334c", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2127 + }, + { + "path": "README.md", + "sha256": "4470322803e77abed94cd2c4be2b11751241775af691f73dd64dc9dcb0418987", + "language": "Text", + "lines": 93, + "truncated": false, + "block": 1, + "row": 11858 + }, + { + "path": "cshift/__init__.py", + "sha256": "14b81c713f61abc8843fd9662791f49a154706f7fa609373e48849093d455b32", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 1, + "row": 5032 + }, + { + "path": "cshift/__version__.py", + "sha256": "acf49f5a021eab661654fc8448e030081b7cbdfb6c4e9224b8b0060c4cf24507", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4970 + }, + { + "path": "cshift/cshift.py", + "sha256": "1b00e8759b49d88ad5c098aee68454c9c018e7d56596c36199255b0abc053260", + "language": "Python", + "lines": 205, + "truncated": false, + "block": 1, + "row": 7777 + }, + { + "path": "cshift/utils.py", + "sha256": "3a74592dffd132cee9b7cc40913610f53cdee3f5069f83936ae132e9fb3c5e31", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 1, + "row": 6534 + }, + { + "path": "setup.py", + "sha256": "3e357c8bf71347a9a7b90893cc58aaa684a784892f94669fde49d801cc132d42", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 1, + "row": 5290 + }, + { + "path": "tests/test_cshift.py", + "sha256": "c629bbc1135a2653070a8e7defaf7395c971f8c2b7c82077c1ef3053459b1bbb", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 1, + "row": 6741 + } + ] +} \ No newline at end of file diff --git a/manifests/84/github.com__h-idei__mbhrnn.json b/manifests/84/github.com__h-idei__mbhrnn.json new file mode 100644 index 0000000000000000000000000000000000000000..610164c09985c8ae3d04eebdeb5c2ce2a57dcebc --- /dev/null +++ b/manifests/84/github.com__h-idei__mbhrnn.json @@ -0,0 +1,66 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/h-idei/mbhrnn", + "url": "https://github.com/h-idei/mbhrnn.git", + "host": "github.com", + "commit": "1501fca90602149585e34266b81cfa9513d5108a", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "c71d239df91726fc519c6eb72d318ec65820627232b2f796219e87dcf35d0ab4", + "language": "License", + "lines": 201, + "truncated": false, + "block": 1, + "row": 2216 + }, + { + "path": "README.txt", + "sha256": "e0ce6963a185e33f0ceb2bc4828aa85af377833110347907093810e473ab80ea", + "language": "Text", + "lines": 59, + "truncated": false, + "block": 1, + "row": 11855 + }, + { + "path": "error_regression_allostasis.cpp", + "sha256": "dafcbfbc0f2658457bc7487bfc552d418f8e1fb110af7bf66e6a7138e1b1e8db", + "language": "C++", + "lines": 678, + "truncated": false, + "block": 1, + "row": 287 + }, + { + "path": "learning.cpp", + "sha256": "5fb35df7c6d532c1c0f0d81e2c400aa34cc4cd45085750a1c9de377e4459240b", + "language": "C++", + "lines": 486, + "truncated": false, + "block": 1, + "row": 283 + }, + { + "path": "plot_er.py", + "sha256": "7ff5be21fb78fe25e7fff0b9dd0e376640ae74a970a53dab2c54dd6ffa000ad0", + "language": "Python", + "lines": 443, + "truncated": false, + "block": 1, + "row": 9562 + }, + { + "path": "plot_learning.py", + "sha256": "3cf0f31b721abb20dcf0f637d6c32778f32b682b3a06f3d6efec65bf45b4e8dd", + "language": "Python", + "lines": 384, + "truncated": false, + "block": 1, + "row": 9483 + } + ] +} \ No newline at end of file diff --git a/manifests/86/github.com__jsschrepping__r_docker.json b/manifests/86/github.com__jsschrepping__r_docker.json new file mode 100644 index 0000000000000000000000000000000000000000..ca9817b153e611f101122c07cdad7015f441d63f --- /dev/null +++ b/manifests/86/github.com__jsschrepping__r_docker.json @@ -0,0 +1,129 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/jsschrepping/r_docker", + "url": "https://github.com/jsschrepping/r_docker", + "host": "github.com", + "commit": "187c49cdfa925ebd14226ede042ddc0122cf6215", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "cf52e1899b0ca8ba81048cd11dbd7c842d7cd6d3921aa034142b1faedd00b957", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1136 + }, + { + "path": "README.md", + "sha256": "ab377fe70fe26ee62172a7d0454837cc9b4a5eacd174a48db450c07f172a3397", + "language": "Text", + "lines": 62, + "truncated": false, + "block": 2, + "row": 2608 + }, + { + "path": "install_WGCNA.R", + "sha256": "8fee1e3a0261657e956088a30380a602b44e2cebb20b9519d6002ba10acf7db0", + "language": "R", + "lines": 5, + "truncated": false, + "block": 2, + "row": 2250 + }, + { + "path": "install_bioc.R", + "sha256": "d978a71ce5ee45c01d5f6b2d787b4a3997dbb8a983f187aae95f7c1ef26e3590", + "language": "R", + "lines": 64, + "truncated": false, + "block": 2, + "row": 2332 + }, + { + "path": "install_biodb.R", + "sha256": "257667df6c08ca3844f399f2f7c36b25241d55aabf3ced8437be758ae9dc129f", + "language": "R", + "lines": 10, + "truncated": false, + "block": 2, + "row": 2257 + }, + { + "path": "install_cran.R", + "sha256": "d1c7467ecbe97262e7cdfeca5f82e691bf27d844661f46b4570f14a7c2afcdc2", + "language": "R", + "lines": 74, + "truncated": false, + "block": 2, + "row": 2341 + }, + { + "path": "install_cyto.R", + "sha256": "f4010fa59169cfeca26714bb36b7e73ba00a0b5ad61754a1969ce0901e9661b1", + "language": "R", + "lines": 15, + "truncated": false, + "block": 2, + "row": 2255 + }, + { + "path": "install_future.R", + "sha256": "bf72ae333b50953881c6b31d41f8af7f62e08bbb5e09922be671a508808926a5", + "language": "R", + "lines": 8, + "truncated": false, + "block": 2, + "row": 2251 + }, + { + "path": "install_github.R", + "sha256": "f4f42f97bf7c7a77cd956181441932f2b767327bde722a720514c473bc5ba7f4", + "language": "R", + "lines": 17, + "truncated": false, + "block": 2, + "row": 2256 + }, + { + "path": "install_github2.R", + "sha256": "2a3a26d87f9f065494b45b1113866fbe22c27a1fb6bb6e0b8a3dbbbedcf0a02d", + "language": "R", + "lines": 20, + "truncated": false, + "block": 2, + "row": 2258 + }, + { + "path": "install_scEpi.R", + "sha256": "4cc2543e685ef88f515e155d84cac03ac5b5dfc20eab073970d0f316cd7361af", + "language": "R", + "lines": 19, + "truncated": false, + "block": 2, + "row": 2265 + }, + { + "path": "start_docker.sh", + "sha256": "a418ea9202a8232346f40695140fe32169bf3356affb660a84b5a46ba72d6989", + "language": "Shell", + "lines": 1, + "truncated": false, + "block": 2, + "row": 2495 + }, + { + "path": "test_installation.R", + "sha256": "fa86516861913280e77a992a7fe7acb9f5a89886e312ada8993c7b4f68ef2325", + "language": "R", + "lines": 167, + "truncated": false, + "block": 2, + "row": 2281 + } + ] +} \ No newline at end of file diff --git a/manifests/87/github.com__ratacad__geode_data.json b/manifests/87/github.com__ratacad__geode_data.json new file mode 100644 index 0000000000000000000000000000000000000000..819bad40b51e33653c8954e34b9be2aed561a935 --- /dev/null +++ b/manifests/87/github.com__ratacad__geode_data.json @@ -0,0 +1,111 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ratacad/geode_data", + "url": "https://github.com/RatAcad/Geode_Data/tree/v1.0.1", + "host": "github.com", + "commit": "906c9beeee3eab63dda2abd50f918cc940316ab7", + "license": "CC0-1.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "a2010f343487d3f7618affe54f789f5487602331c0a8d03f49e9a7c547cf0499", + "language": "License", + "lines": 121, + "truncated": false, + "block": 1, + "row": 2210 + }, + { + "path": "README.md", + "sha256": "ee09fa769087c388c7b4954e853be08a3b97ff325b4a6c3aa36796d421c544e9", + "language": "Text", + "lines": 452, + "truncated": false, + "block": 1, + "row": 11989 + }, + { + "path": "additional_stats_geode.R", + "sha256": "e514306b7f85d6573c17e47112cb1f53567797e7261d7c58742fb73a38ceb9b7", + "language": "R", + "lines": 426, + "truncated": false, + "block": 1, + "row": 10516 + }, + { + "path": "data_analysis_final.R", + "sha256": "83205630b846966acf8c94a1e2e1353b82c6198e78a35aaaaa5afa5010e1d148", + "language": "R", + "lines": 2591, + "truncated": false, + "block": 1, + "row": 10615 + }, + { + "path": "learningcurveASDTDfit.R", + "sha256": "b766e4428e4263d3a02532595f1cbd2082254324fba5581beaf809754dad0ec4", + "language": "R", + "lines": 237, + "truncated": false, + "block": 1, + "row": 10332 + }, + { + "path": "scripts/run_VABS-3matched_suppfig9.R", + "sha256": "5920c17d19424bd12dda617af4ac7595335b9eb1b699dca3a4f9c3edf6444c7e", + "language": "R", + "lines": 459, + "truncated": false, + "block": 1, + "row": 10532 + }, + { + "path": "scripts/run_heterogeneity_deep2.R", + "sha256": "417c1e631c699628be6e21439b490750f87a10ec8c004480e30add9e43db4a5f", + "language": "R", + "lines": 118, + "truncated": false, + "block": 1, + "row": 10211 + }, + { + "path": "scripts/run_learningcurve_3group_ks.R", + "sha256": "b4da3ad75bedbd00dda1c6dc4cff333288bb6563b41b8afce22e3d594418faf5", + "language": "R", + "lines": 150, + "truncated": false, + "block": 1, + "row": 10228 + }, + { + "path": "scripts/run_learningcurve_bootstrap.R", + "sha256": "ab06a1f7606fa18ae149e2e1c8622c33f8eb68198521e0fe884f126eec2d9fed", + "language": "R", + "lines": 227, + "truncated": false, + "block": 1, + "row": 10335 + }, + { + "path": "scripts/run_nlme_learningcurve.R", + "sha256": "cf56f4950b321a6b28420e4a48dd66305aebd3282949f4bae049529a44712603", + "language": "R", + "lines": 68, + "truncated": false, + "block": 1, + "row": 10096 + }, + { + "path": "scripts/run_scalar_param_stats.R", + "sha256": "812b758144a3f3144bbfd8bcdbaa4461ed6eeb02ac16bcb4ebf7029b4f4574e4", + "language": "R", + "lines": 113, + "truncated": false, + "block": 1, + "row": 10185 + } + ] +} \ No newline at end of file diff --git a/manifests/88/github.com__navis-org__navis-mousebrains.json b/manifests/88/github.com__navis-org__navis-mousebrains.json new file mode 100644 index 0000000000000000000000000000000000000000..ce27cfc4fb64472d14f53f4b4269a5dc61dc205f --- /dev/null +++ b/manifests/88/github.com__navis-org__navis-mousebrains.json @@ -0,0 +1,84 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/navis-org/navis-mousebrains", + "url": "https://github.com/navis-org/navis-mousebrains", + "host": "github.com", + "commit": "0da6eae6e17c10b64f468707fdad7291ce186a64", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "dc7fedd8b3b31ef1fb4157e43a9c38c9805dc9e7d92b2641f683b0c1b9352d1b", + "language": "Text", + "lines": 91, + "truncated": false, + "block": 2, + "row": 2633 + }, + { + "path": "mousebrains/__init__.py", + "sha256": "dbf24216747e1335daa6f945081cf3108383f2827808737ef393e441ef080b05", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 2, + "row": 1698 + }, + { + "path": "mousebrains/__version__.py", + "sha256": "f362c3412bbcae33dc63f511e60bc9ae6786e302976a206d2f17dbb614ec55b2", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 2, + "row": 1670 + }, + { + "path": "mousebrains/core.py", + "sha256": "4813d3c0110ca4d1faa7ca2bb48663abf630d8739db200bff6992ba68a37d392", + "language": "Python", + "lines": 361, + "truncated": false, + "block": 2, + "row": 2109 + }, + { + "path": "mousebrains/download.py", + "sha256": "b316673b962aacc0ecc0025ef8d38cbf344052c03e85bab1fffc8f7810e80f62", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 2, + "row": 1808 + }, + { + "path": "mousebrains/templates.py", + "sha256": "6b74520bd7ef6ee88e6a5fccb9a520b2db47466eb5e703d23c93fc674fb8f817", + "language": "Python", + "lines": 208, + "truncated": false, + "block": 2, + "row": 1989 + }, + { + "path": "setup.py", + "sha256": "5f768a697f7885725866c5cfee746396e052a2652ec3ed47cdb47fd7a8a91783", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 2, + "row": 1740 + } + ] +} \ No newline at end of file diff --git a/manifests/88/zenodo__20736458.json b/manifests/88/zenodo__20736458.json new file mode 100644 index 0000000000000000000000000000000000000000..d34eb6c84d5b850d49fdefd6373f425e8bf47b83 --- /dev/null +++ b/manifests/88/zenodo__20736458.json @@ -0,0 +1,57 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:20736458", + "url": "10.5281/zenodo.20736458", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "1b78526a29c0b5a7ba387aff70631d2d4881a121c6419ee3b2aa0aa9bf764d99", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2166 + }, + { + "path": "README.md", + "sha256": "a861ccefa033ab477947e115ece467c52a8931213275edfd27823c308cf7ac25", + "language": "Text", + "lines": 153, + "truncated": false, + "block": 1, + "row": 11911 + }, + { + "path": "adpbulk/__init__.py", + "sha256": "2b131f8f7c07bed300f412e8a84d6b857460634d5e680a8104e6039865b7ce3c", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 1, + "row": 5069 + }, + { + "path": "adpbulk/adpbulk.py", + "sha256": "3f87aaf9198b84052e8b16a23376a59a3f248de28d625cb297453e3a531a06ba", + "language": "Python", + "lines": 285, + "truncated": false, + "block": 1, + "row": 8386 + }, + { + "path": "tests/test_adpbulk.py", + "sha256": "00eefd9ec115c0652bbbf59ab3a43f934ea5ce4312dfad5d767e3d344e51bbca", + "language": "Python", + "lines": 214, + "truncated": false, + "block": 1, + "row": 7651 + } + ] +} \ No newline at end of file diff --git a/manifests/89/github.com__davidodde__shamsan_etal_codes.json b/manifests/89/github.com__davidodde__shamsan_etal_codes.json new file mode 100644 index 0000000000000000000000000000000000000000..08173ce3d5c18a7e79ffe5c293d228a6f060ddd6 --- /dev/null +++ b/manifests/89/github.com__davidodde__shamsan_etal_codes.json @@ -0,0 +1,75 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/davidodde/shamsan_etal_codes", + "url": "https://github.com/davidodde/shamsan_etal_codes", + "host": "github.com", + "commit": "72e9b467d58c28c328eef81857d9a025034babf2", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "8504bb8d80fb5c6dc2b0ac0a19a026391117b544a2441afbc6993bd7df9c658c", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2105 + }, + { + "path": "TPM_3D_20190201_Immune_Analysis_20190912.m", + "sha256": "297aaa13e41d7b066ad5cd65a137bcfec75fbe34277641793f2d2b2f9680681c", + "language": "MATLAB", + "lines": 718, + "truncated": false, + "block": 1, + "row": 4300 + }, + { + "path": "TPM_3D_20190201_V1p9_20190911_1.m", + "sha256": "5e614276d064bf2cf9757216e69bf2b31ad678a7bc7ab31d3524d9dd38971c6b", + "language": "MATLAB", + "lines": 1923, + "truncated": false, + "block": 1, + "row": 4350 + }, + { + "path": "analyzeCMSoutputv1_0.m", + "sha256": "a567f53b0512cc0192b317a2a0d904ab090548a876d831e455371d8ad3062305", + "language": "MATLAB", + "lines": 117, + "truncated": false, + "block": 1, + "row": 3559 + }, + { + "path": "cms2D_par_shell.m", + "sha256": "1b021bf78b494654134959ffa036c660c7eac3a972e6934e9d82c334f2087c96", + "language": "MATLAB", + "lines": 132, + "truncated": false, + "block": 1, + "row": 3708 + }, + { + "path": "cms2D_shell.m", + "sha256": "4bf43780dbdee22db254b2deb70612d703cc72608d90cc15e0b0db452cc7e174", + "language": "MATLAB", + "lines": 186, + "truncated": false, + "block": 1, + "row": 3916 + }, + { + "path": "cms2Dv1_0.m", + "sha256": "ae44bd5b3b69a4b9c2f258321d54cc7f726b41a094dad8baecfed5344fe692f4", + "language": "MATLAB", + "lines": 521, + "truncated": false, + "block": 1, + "row": 4259 + } + ] +} \ No newline at end of file diff --git a/manifests/89/github.com__molecular-neurogenetics__pd_asap_garza2025.json b/manifests/89/github.com__molecular-neurogenetics__pd_asap_garza2025.json new file mode 100644 index 0000000000000000000000000000000000000000..476510c4fbef864ec5770b51afc7ef6c60c283be --- /dev/null +++ b/manifests/89/github.com__molecular-neurogenetics__pd_asap_garza2025.json @@ -0,0 +1,3387 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/molecular-neurogenetics/pd_asap_garza2025", + "url": "https://github.com/Molecular-Neurogenetics/PD_ASAP_Garza2025/tree/v1.0", + "host": "github.com", + "commit": "63d638f3d1d648231c870170f27a80f48f034109", + "license": "MIT", + "license_confirmed_by": "license file LICENSE.md", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.md", + "sha256": "506e12907637b1372ba446ac84cf63a91c60ae490c9359859aacb31fe2eaf249", + "language": "License", + "lines": 22, + "truncated": false, + "block": 1, + "row": 2167 + }, + { + "path": "README.md", + "sha256": "eea1a55529535dcb02283c3b913b8df25fa799f1218b2e05efe53b109a2f3524", + "language": "Text", + "lines": 69, + "truncated": false, + "block": 1, + "row": 11879 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Script_RunFC_Genes.sh", + "sha256": "14d168c8e63e587d9087d53b5b87aa66c9e08b2e0779cc6f96d23eb9c83e1a95", + "language": "Shell", + "lines": 21, + "truncated": false, + "block": 1, + "row": 11252 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP156_PD_NP21-57_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "f193d7eac83b007ae25df61abf2d34183575fd61f9fec9206fecc1b571cfa28b", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11434 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP157_PD_NP21-208_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "d5fb29484096f350fe66e90343bee2a3ba51c9604114b1486351de7dcff43bb3", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11450 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP158_PD_NP21-217_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "c259bb23b40c4a4072b7897d4db18df7d7e3835f7e7164a8bc59b99ae438dcaa", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11449 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP159_ctrl_16-119_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "d8dd129b7f0a017011ab7aa2ad5279abb4171bc4f838f0397111c95bfdbccb59", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11451 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP160_ctrl_NP17-216_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "17e0c731791d86c0b10f957be18f9909e2b26b2a8b0b26a5ef8950a88d64e31e", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11474 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP161_ctrl_NP18-46_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "f22cef37c186149e2e76ed5f5d301c277c599038327d58e548505530ba255cbc", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11470 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP162_ctrl_NP18-148_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "8b8a366704fcd332662dc29be17046e2412b29f9df390aca3c712c049d05fa23", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11479 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP163_PD_NP21-208_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "0a20c7d075780d4dcc617833ed562bf1f8262f1bcec06309fc3740696cb44f2b", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11440 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP164_PD_NP21-217_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "4884eee86a61258a38bafcd2896cb19a853c6a434b4903f1b4f42461907388a7", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11443 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP165_ctrl_NP16-284_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "d9f4d7678fbcbc2665433b7191a57c7923616b15ac7251ab00c1b1d10ce89a29", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11483 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP166_ctrl_NP16-293_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "5e338cfc24c9e2210e3d2806130d6a7cf3913c2c86160ef891be1abc4a8453ad", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11477 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP167_ctrl_NP17-20_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "bebecb302f8b49a37f0da52c7acfa11d66fd70f96548fa55fb8705bf2bda368e", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11467 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP168_ctrl_NP16-284_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "029179a78071a14064b6e638b23fdc4686b2640b56c5cd755bb37d87e6c49029", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11473 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP170_ctrl_NP17-20_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "0c19adef4a341c961bef02950ac9aa20d01b2852b3bc30dafb3ee92cb3e2646a", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11457 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP172_ctrl_NP18-46_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "cc617fbc1dba4dd224402521feee97a93bcf8a1113d0f3fe8d31b2994acd5503", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11468 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP173_PD_NP21-57_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "6e5d10a7ee0dd0c0bc52497f729cfae572055beeb054777c7453f19707c88748", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11420 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP174_ctrl_NP16-119_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "700f9339380e1e6d88a1a2ea771c7e3b78a5fd7e550e61cc589c3f3f5d2eb4ee", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11478 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP175_ctrl_NP16-284_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "a7e8aaba7a283aae337e81d0b19723a186e6eb26d01d2be26a48dbd795627863", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11454 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP176_ctrl_NP18-148_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "b59e7d9e5285042ae8bef6feece65aadff9b1830eb22c440d6ce2c7f9664d95c", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11471 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP177_PD_NP21-57_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "c1d51782d972dd936946c095ba9f8044cb9fbdfe1bf8f355ea9fa424c1b605d9", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11417 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP178_PD_NP21-208_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "a638216b5b22e34be6790f5c14720c208d24bc64402f95795b560ce970699a70", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11422 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP179_PD_NP21-217_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "6f1bfd9ae65cfa0a8ee713c4a0c7d23d4c15c9326f63f083d3561a22bb368122", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11428 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP180_ctrl_NP16-119_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "a933f8c72f174b797d8eae21683f42f3cf18f3ee67fb373a750b71f82a0941b0", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11455 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP181_ctrl_NP16-293_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "116c891d972f0a0a8db90a25b809f9a83c5ee74749f6b222de896886e95d63c4", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11458 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP184_ctrl_NP18-148_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "56b9dffb784550185d8a745055bbff9ecd6125a091d6d1668b35a2695d3532f9", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11463 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP185_PD_NP21-217_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "1253cd13f8b0207ebe9756062d51babf0ba3ded4c5a4d28686bdd0de9c6f9032", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11441 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP186_ctrl_NP16-119_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "8d94b6f897f6d2db936d4938308ec2f54518c3be92ffc4cdcb5bf6125920d4d1", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11480 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP188_ctrl_NP16-293_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "c5b0c39411c816a2b13256f1fd2ac4647ada2417aa6d106620f872a0ea2bb9d2", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11481 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP189_ctrl_NP18-148_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "272f426d76cde89b451c465a633c7f35cf7f1eaaaf8a46d016d31710861112a5", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11475 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP190_PD_NP21-57_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "f99689c33637c0691b0ec81fcc4000b60b2068e232e0126235aa867ce154402e", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11435 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP191_PD_NP21-208_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "aeeb0e92e0aba0ad04b7ba6de8be67010c9224de203a8c5f697958a2d5182f40", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11448 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP192_PD_NP22-55_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "fa0c26e4388da522e026ac303668a34622452ce4223029c147a945733f1876f6", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11436 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP193_PD_NP22-55_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "218cde960f8606b86d7d53debfbe53cdbbf7cc94c9f2a441478c68f1989daa16", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11423 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP194_PD_NP22-55_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "f560491e75714409c864535787141cec1e391b7d9cb7fd6690bd9093543c55ac", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11418 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP195_PD_NP22-55_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "4bf56dc8d7ee5a955a588d6a155f787d55a7dc28b32426d46617191686cd7999", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11426 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP196_PD_NP16-285_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "51849c8f72550cb6a1a69597413971fcc206c14958212290042ab937293f21ed", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11446 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP199_ctrl_NP19-218_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "302cde51e41ab82dcb86b2f94eda2bbe902d2fb8423ada20000b74b59a44bceb", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11476 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP200_ctrl_NP22-37_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "d25fb498bd8765bf6857a19f8d32ef33c85050645c8cd5cd9a1d1a12d3c97e8d", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11469 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP201_ctrl_NP22-75_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "2d3c46fc94a8767a9ba519623d164ebc3176d61dd477d4e130bb0f42d26e7493", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11461 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP202_PD_NP19-137_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "fa6cc7c52b96d9ed7fba9c1fabd847778978a045d1a4f3035f2f5fb9ff679d50", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11452 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP203_ctrl_NP19-218_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "89a266370f602e61b0dfa20c152feb634c101d1049306b103177b1ec21694095", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11466 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP204_PD_NP21-04_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "48dc89ae6afd3b75fa8a580a1e1e990f1c30d0d3094f426cb26c79fcacbe3124", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11425 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP206_ctrl_NP22-75_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "29fdaa15dbae4e4cabe1a2e114ebf11226328f4371219008d21aeaa4aabe3e9d", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11442 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP207_PD_NP23-21_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "c388e0ce2af71cccd74edacb46fa7de66bfc813465611d280752fd2e6afde6fe", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11432 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP208_PD_NP16-285_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "6fe9ef61cc68831836a0310f327c0ae323da037a9ec8667852e08d9c4f8e1ab4", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11429 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP209_PD_NP17-232_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "79bb89915df991258a59e992b8d2f49cece2d050288f9018c8f4b33dcb9acc69", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11430 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP210_PD_NP19-91_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "2dfd91457dfe06f83db7b530d4989a1c38ef0847a01a8238889192963e4d4bc8", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11415 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP211_PD_NP19-137_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "a7e63f9d371f2da95a40eafc74d2ad182505e43c1c4dc6ea06689be9cd367c4e", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11431 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP212_PD_NP21-04_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "c0e14221230f9b5636b1a7d509932a9e4c3764225be10bf8a51e2bcc1d2d2ac8", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11416 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP214_PD_NP16-285_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "499b4347b2591b941df8390d93d9cb311db83cb167d363bab291f41d11fc765d", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11444 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP215_PD_NP17-232_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "fa84d2454aeeb47b36fa6699b6351cc5900ef6ff3c59080363f3fba4651946cc", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11453 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP216_PD_NP19-91_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "e2fab989ab20c3337eb8dbf7b9ce1be69017debdd27ff19055d8e6c4a72ecc5e", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11433 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP217_ctrl_NP19-218_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "c886a4b3d07347dada35aa7a0b99b03f5a167c7bc9d1eb6707567f4da61d2bf3", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11482 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP218_ctrl_NP22-37_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "8750c1ad7dd556f6f6eeb605db4371c022305ea0142f47a5f73c90b36d82dc5f", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11465 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP219_ctrl_NP22-75_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "4f76ebbe0900234fa1decb7d250e3dc3519403fc57e72989f45c7813d4bfc3d4", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11462 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP220_PD_NP19-137_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "45e3fc8b6eedc8305c12e7b7754193e049fbfe17175e70fccb6cf75d77ac53ee", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11438 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP221_ctrl_NP19-218_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "c65e42dad7d18bd8729eb0689f4d179c40d75eea4b2ec1e02963627c7363cfc6", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11472 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP222_PD_NP21-04_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "8457f17a7026416d5d951496b1b87c4662e8307b24211ff188a897458f52b5c9", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11421 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP223_ctrl_NP22-37_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "201b76bba8573ce272f6e0386b770cb3c8e83184c7f7f85741ad0c464eace665", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11459 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP224_ctrl_NP22-75_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "0609aefb41d81a31d2f56adc75cc7bd2e3cc756cd8b33f18b9ac6b16ae2f7fda", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11456 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP225_PD_NP23-21_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "6c85ca8fd218ceb807798077804deca4adcd53800d2a110fca93802069cb6ff4", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11427 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP226_PD_NP16-285_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "8e32365dce469dafbd9bf37c36779b1f87be85622d1f35a94cd6868329612b52", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11447 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP227_PD_NP17-232_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "4a3afe9f5d0852eccf97dfe05a39c502f3ecee098abc3f58a3c6239b9043cc4a", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11445 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP228_PD_NP19-91_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "348ec96ee41baf78c48b3c48692c81bfde88ba6a1ca5298fff4419533b3dac8c", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11424 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP229_ctrl_NP19-137_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "fe2809aea13ce2ac92f438c25eba7e37f6c5a5224fb5d9446c66c5082c038b7d", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11484 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP230_ctrl_NP21-04_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "2a3a200ade8aa75ddf71d37fbcca083f017d8a5acd34ad267be3f3a57feb427f", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11460 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP231_ctrl_NP23-21_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "7696dec995ef22dac31244663e9b7ec7b979b2f34cbe1920e9cf10c28b83a21f", + "language": "Shell", + "lines": 16, + "truncated": false, + "block": 1, + "row": 11464 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/testExoncounts.sh", + "sha256": "6838b5ba5a947db43fa9b4f4c374659283be164a3e31a1ad5777dbd9f98423bc", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11412 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP156_PD_NP21-57_PFC_bulk.sh", + "sha256": "b6b084f0f00f779ee2b57d7ce4c872820bcf38a9fcb70624dc5428d954fb7707", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11524 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP157_PD_NP21-208_PFC_bulk.sh", + "sha256": "23035a54b59b96a1611a7cda82fde357c9514c7c9a86280deb6de38a927d934f", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11528 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP158_PD_NP21-217_PFC_bulk.sh", + "sha256": "9800783948b078f68973daa76b52690de06d9d7cc137167501e03c378650f52f", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11534 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP159_ctrl_16-119_PFC_bulk.sh", + "sha256": "b8dd1e482fbf26f709811c70b202603555c015f7acc691bf2043b5ce8910ab0a", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11538 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP160_ctrl_NP17-216_PFC_bulk.sh", + "sha256": "febf5561ded754ea2dcb4502cb580d8cfbee84c248feee7da66e74a20d9fc22c", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11573 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP161_ctrl_NP18-46_PFC_bulk.sh", + "sha256": "b222cf4c1fa15b2012001c7324f8e7a24ac2064ab504a0ff66feb7401acbe8df", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11554 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP162_ctrl_NP18-148_PFC_bulk.sh", + "sha256": "5f0802542dfab3cecfefc15d66ec11aaadf844361a90191fca25bf3a53dee4e9", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11567 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP163_PD_NP21-208_PUT_bulk.sh", + "sha256": "26849f360602690aa56b85ba3aa3ba3aabd99e1a4e4049aa34e7dfc3bb926875", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11529 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP164_PD_NP21-217_PUT_bulk.sh", + "sha256": "7a0e479158a773304daa39e7458ac1c87661ef483ba3b869c4c95728297f3b77", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11533 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP165_ctrl_NP16-284_PFC_bulk.sh", + "sha256": "25c25f48dedc0e9fa40230133537e937742bc66e16ec7be1a3f0243a808ce83a", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11564 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP166_ctrl_NP16-293_PFC_bulk.sh", + "sha256": "143ad087fbbcb35e753e0c21c88e633daefff89f25ab9d6aad93377bdec966fc", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11561 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP167_ctrl_NP17-20_PFC_bulk.sh", + "sha256": "6b4b025257e2e51babac19eedee3a016d959ddda318a347dd775b949e7d092c9", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11547 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP168_ctrl_NP16-284_PUT_bulk.sh", + "sha256": "04935b90f19e9e7e6f2214e0b4bf0632b60ace80d89a1e8e3756706b5cb89b16", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11560 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP170_ctrl_NP17-20_PUT_bulk.sh", + "sha256": "a28b9f33fc85bb4c30d99c3f01ab39562f77f7f473058c2ef252aa3276d2339c", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11552 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP172_ctrl_NP18-46_PUT_bulk.sh", + "sha256": "7d3a6a8d6f65f647e32db3beceefb706a07aeaca5d0b1a4b790584d8e55acfaa", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11549 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP173_PD_NP21-57_PUT_bulk.sh", + "sha256": "2e3f3d886124dc72425ca3a85171de1576efb8d4d12147636fdb189ac5993b64", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11513 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP174_ctrl_NP16-119_PUT_bulk.sh", + "sha256": "c520c4b366ea2f42b1608bbc0fe34f1f65f37ef625412b31e750145ab5464915", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11571 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP175_ctrl_NP16-284_SN_bulk.sh", + "sha256": "ed12ae61847217e425afab46cee75a03cb068116aed8763d684863846b06db08", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11558 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP176_ctrl_NP18-148_PUT_bulk.sh", + "sha256": "198b786fe68207903c04e300f730c8b69fcbccb56bacc04dfd41e31d6117b522", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11562 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP177_PD_NP21-57_SN_bulk.sh", + "sha256": "e8dc4cedf29db579390cef31f9b1c5d9169f7344981c2c956eb7947836c7ecf7", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11509 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP178_PD_NP21-208_SN_bulk.sh", + "sha256": "030ae70be5d6282c96de0c73bdb9474ccd1a2dc68556cea1f15543f3aafa25f6", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11510 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP179_PD_NP21-217_SN_bulk.sh", + "sha256": "33f2cf79356c74bcf11bef7698f26fa15cf5c0e5ce60fb0260370fe1bc62c917", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11515 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP180_ctrl_NP16-119_SN_bulk.sh", + "sha256": "2958554b5253d20e011ec849c4fd96199ffdccb91641823815fb9b5c2cbc83ee", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11543 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP181_ctrl_NP16-293_SN_bulk.sh", + "sha256": "cf49b59b66862299e13dae438972c91a34ac9aaa9738b0790e9dd4bdd7ae3fec", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11555 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP184_ctrl_NP18-148_SN_bulk.sh", + "sha256": "f75d322882f3af4850c0d7caa53f40bc341631530526e9d9bae61866da41dcd9", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11559 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP185_PD_NP21-217_AMY_bulk.sh", + "sha256": "50f8cb4a276e89e62afc0cca41f3de8acde210bac87163fc5760af7e7790b8f0", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11530 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP186_ctrl_NP16-119_AMY_bulk.sh", + "sha256": "24ba218e24427d158a0734c44cdeba7a84e9d6084c2c09945863355d43ecb35d", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11563 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP188_ctrl_NP16-293_AMY_bulk.sh", + "sha256": "fa2a0553dba919174d4c8a69f05fcf7118283dbe95991b6ea36709e76bd358ad", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11572 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP189_ctrl_NP18-148_AMY_bulk.sh", + "sha256": "4b94e0d596b65f7fd7022e44266166c98861ed5d1327d4e3f35bb5afed3b7fb3", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11565 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP190_PD_NP21-57_AMY_bulk.sh", + "sha256": "58500dc01a6f10197a292e6dbddf7dcbaef9b477e5c7c6eed9d3d3a177fb4a9f", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11517 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP191_PD_NP21-208_AMY_bulk.sh", + "sha256": "a8ce963bb9491436d590cf8601dbcf7ec49657d1c44706ff13a9e0bab72a3936", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11535 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP192_PD_NP22-55_PFC_bulk.sh", + "sha256": "32bc1e448187732a38d00a3e372b77ad509380025e9672e944b90b96e768b67e", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11514 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP193_PD_NP22-55_PUT_bulk.sh", + "sha256": "8ec85d7b0d19e13764a3370b3e60adc7e5537890c16e6f81f012328b4ebbe621", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11521 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP194_PD_NP22-55_SN_bulk.sh", + "sha256": "3a09590ca3bb8fecdc5bcde628014dc83da9c2170b4e851535f0bc9066b0b7b4", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11507 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP195_PD_NP22-55_AMY_bulk.sh", + "sha256": "dded6fa118c9324dcd2ef10e621dbde82dd48844fcc53b2013d9fadd6fa9c6d8", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11526 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP196_PD_NP16-285_AMY_bulk.sh", + "sha256": "fd56dfa78fd6f8293ca9c407fe4e10ee32998f9f18f7a0b5d543d10113cbc757", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11541 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP199_ctrl_NP19-218_AMY_bulk.sh", + "sha256": "505e655c926bed5b0b7822e43e8d473f762c6f299d1d1eca8ba217882d2b8456", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11566 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP200_ctrl_NP22-37_AMY_bulk.sh", + "sha256": "6f7a6ee8ff344718f21d518986147de7888e26a17fafc3614a4bca5150cb2b8f", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11548 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP201_ctrl_NP22-75_AMY_bulk.sh", + "sha256": "af1b3752168a112aec85a5e88cbcf83bfe3ef953b5f23d14e305bfa49d4d7c42", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11553 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP202_PD_NP19-137_AMY_bulk.sh", + "sha256": "13f97367b5cb793f172b521355e1857ac5ee5a789f72332f56c1668e1600d617", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11527 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP203_ctrl_NP19-218_SN_bulk.sh", + "sha256": "8b0df90bf63f13068dcd111cd4c32ab976cba3af03c13842546eae339e9a44e7", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11550 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP204_PD_NP21-04_AMY_bulk.sh", + "sha256": "26a2f1343521d6da06a4edb4e3af4406add9446c6bf5506d58ec8c50877c9e98", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11512 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP206_ctrl_NP22-75_SN_bulk.sh", + "sha256": "6c4de5014a1936ae95b57ebc3ed8807de29e62034138da5a569d965ad008ce35", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11532 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP207_PD_NP23-21_AMY_bulk.sh", + "sha256": "97081a09c7cf1025424227b49a2881117f382f6afbe30e7d433b3dc63c7bb02d", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11522 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP208_PD_NP16-285_SN_bulk.sh", + "sha256": "724ed63f78f4ebd453951f6fbdb0418dbbf6ece7542b08a7ae72bde7d9dd1133", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11519 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP209_PD_NP17-232_SN_bulk.sh", + "sha256": "40d2c77528ad0dd03d8eaf004dfae7142403a452e1c0dd05bcf72eddd251d8f6", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11516 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP210_PD_NP19-91_SN_bulk.sh", + "sha256": "2cea74af17a50fb1b7d60fe3efe3f437d856ef849ebd764fd560d30e9ce12fe7", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11506 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP211_PD_NP19-137_SN_bulk.sh", + "sha256": "7397deb735ecfd543ee5a89f513794218e4e663595708d4e24f41884c9c97d9e", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11520 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP212_PD_NP21-04_SN_bulk.sh", + "sha256": "a419cf551b94ab0fb17fa736b57bb698f1c516d61b27530f211caee230cce9d4", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11508 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP214_PD_NP16-285_PUT_bulk.sh", + "sha256": "b74f2d9ac0ce2748dc0e64e92188d2c6233e49a2668da5f5f083583cb0e4b085", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11537 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP215_PD_NP17-232_PUT_bulk.sh", + "sha256": "6bab479f30f4e7ef98e99ef45d8c4c4c625654052ce18f1df484004502d5591e", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11531 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP216_PD_NP19-91_PUT_bulk.sh", + "sha256": "6f0566138cf1f2943fc1dac66d3ed45ca63e14ec50d9859bcf4f34db9f0211fb", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11518 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP217_ctrl_NP19-218_PUT_bulk.sh", + "sha256": "8c8eec20ad8948c5eb5d5e3fa213e3b3f021cb7b29e40dead89a351c038bbfa6", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11569 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP218_ctrl_NP22-37_PUT_bulk.sh", + "sha256": "586b038aede23c6784c0e58c78413bdb74573a6b3060f35e323904e5edceb309", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11546 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP219_ctrl_NP22-75_PUT_bulk.sh", + "sha256": "939d07d98ffba6d1a9f1ebf44db60032c46e3b314fd5b75ec8d2bef911d92e51", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11551 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP220_PD_NP19-137_PUT_bulk.sh", + "sha256": "d6967c2e546aafc38462845e336f03b04cb48894f8263bd359a6c1273c1c715d", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11539 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP221_ctrl_NP19-218_PFC_bulk.sh", + "sha256": "83134d6001f192b4faba0f13fe47082156e7057a4073c6fe4f62ad6b2a4f0f7b", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11568 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP222_PD_NP21-04_PUT_bulk.sh", + "sha256": "9aa4807ff7415911525a33432c674a1199e4b50506c01c96ba179ee47c37f1a1", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11523 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP223_ctrl_NP22-37_PFC_bulk.sh", + "sha256": "536ee9fce7fa4a7a047783dbfa4c74ed98561a3cbb8db74cdbac193f66e14d83", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11545 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP224_ctrl_NP22-75_PFC_bulk.sh", + "sha256": "dad48eb5f7d75b16a3dfa69fbf0867df82a6f2b33cb52a42ee6664ba425d7490", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11557 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP225_PD_NP23-21_PUT_bulk.sh", + "sha256": "bdecd9645fd9ec1aeecffcca85193293269a6cba812cef50c97251ec256065fb", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11525 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP226_PD_NP16-285_PFC_bulk.sh", + "sha256": "b540b0cee532d58b452a6809981f02c5a5df46c4d85791165e3cacbd063374c8", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11536 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP227_PD_NP17-232_PFC_bulk.sh", + "sha256": "e1c2845694c320b6ea3a57a7656005b268b52b1ee8f7c93835e51280067ab139", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11540 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP228_PD_NP19-91_PFC_bulk.sh", + "sha256": "0f82c4abf398de4bf26917e5ca06efc0b6bae53d7c62c9a834834880bc010474", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11511 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP229_ctrl_NP19-137_PFC_bulk.sh", + "sha256": "a7dee0f162530d95d6c4ed6c0f4a413ea356c2bdb7f07c76e20f9e6285ae8ba2", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11570 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP230_ctrl_NP21-04_PFC_bulk.sh", + "sha256": "2da371402e81509e1fbd5f01cab0965b58e088bcbc488355e9267dacc81cc13c", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11544 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP231_ctrl_NP23-21_PFC_bulk.sh", + "sha256": "cfccd62a1f9d7322b9832409a100d3e898ed549e7d002cc8470b2b520c16a54c", + "language": "Shell", + "lines": 11, + "truncated": false, + "block": 1, + "row": 11556 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP156_PD_NP21-57_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "f99d4e9271b3670d89089c9111ec4ff17faf193d4e54ae4aeebe2725f4a143cc", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11307 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP157_PD_NP21-208_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "1f41829b0521a4ac28e91c43ade8de4b02bd080a40fe123781f86ccc9d4091a8", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11318 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP158_PD_NP21-217_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "f5d1a695e0fa12a7694871ba7e3593252ab1dc8417d718635bfd848bbde421e1", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11340 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP159_ctrl_16-119_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "0a3fde039b28ca1c22f2d0e5bad1595f50979dfa51afca73df2ce6873f12cf0e", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11342 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP160_ctrl_NP17-216_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "5d607a376a79a39f31f26cd38e69a745c97b9c7a0e92ecf695f24eb46bebe9a3", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11381 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP161_ctrl_NP18-46_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "ec03d2112a811d60a4c25d51062900adf569201faddc6434555302872a949ebd", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11365 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP162_ctrl_NP18-148_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "ff7a974383dfd8d44fe7a0e859c31c158f51c58cc391d0d6ed6d085359904118", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11385 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP163_PD_NP21-208_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "870773978ef90e4fa2ebe62211f7be91f926738ee05dcf2ba205437b51a32c58", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11329 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP164_PD_NP21-217_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "a4aa1b3d5b200d3a45a145ab89a976a2bff440f0672256557ea581e5f61de83f", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11331 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP165_ctrl_NP16-284_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "0c527f902459a938a6554bd262ebba68e5112e174bee93fdb22c4a1891a27093", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11376 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP166_ctrl_NP16-293_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "3148e32cd9828b7d29c1920e64623df537e6d8799d46409d62917bc362df818a", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11378 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP167_ctrl_NP17-20_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "bd3f751103d3dd5aad47ef54a6a5be94a106de3ef68686ce25bf2bd3da389f00", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11361 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP168_ctrl_NP16-284_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "32733f4c0bf585a7a89ba95cec63249461618f5012879febfd14263e37b5098d", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11379 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP170_ctrl_NP17-20_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "51b0ce4b6fe559aa068e86b10bb28f715d97621e5adb74170a781dd6104f1fe2", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11370 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP172_ctrl_NP18-46_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "68520ff781be0fc93bcc71ae976b05167f0f86e2cf037432daa2a718948766ec", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11371 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP173_PD_NP21-57_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "5759e63a90a0ed16996c32d22bfed9e1214c06a505c1255a79747a4db72d49e7", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11290 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP174_ctrl_NP16-119_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "4ff64d7fe415d4108c05fc1d4cc8ed86a92ec3c1f7b51cbda9bce5a7f85436fc", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11380 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP175_ctrl_NP16-284_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "c0ab2f3f8e45badc642f3b42178a065690194aec2bd7bac5b4a8149817e5fb0f", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11362 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP176_ctrl_NP18-148_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "77c941688db1528c86cd15ff1a3ae05dca4dc31e063dc918f532770f4131c932", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11389 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP177_PD_NP21-57_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "d4d0279e2c1f885faf07ebdaa8770c60bebad6bad2dcea39e497f2e10aaa994a", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11277 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP178_PD_NP21-208_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "f6fa18f9939fe28d9f89def2c217f3f5325610ee395ec3c69aa0db996984bc5b", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11313 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP179_PD_NP21-217_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "eceacacbd4adc81fb66b4d2de3e312f942eec764177c9c3cd76b4f3afaa0c6a3", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11312 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP180_ctrl_NP16-119_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "3cb0a6b55f5089eb8d3fade0066377906508e3f21fc21cabdeb78527017205c8", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11369 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP181_ctrl_NP16-293_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "29dbbb3b73e2a2520b9e5b76fd7c734a6613593aa04563f36c29e4fa4bcae69d", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11368 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP184_ctrl_NP18-148_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "01c6264e39c733eda0468ccbfa6867759b334cc139915c74507fcd3d474d2406", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11367 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP185_PD_NP21-217_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "d9a09470813c7f1358931d636911c1215e712e00970709f1ef87d910b0bf698c", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11344 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP186_ctrl_NP16-119_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "5a8300a2aad8f41d8eae60eb041c4fcec788410744172913f1279b8747243ff0", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11388 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP188_ctrl_NP16-293_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "4298cd73335b6d16c3eeb3337948a196e4b224f4378713271b65eb9c7f98fc4b", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11387 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP189_ctrl_NP18-148_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "37b18b8e7f7b2cbc640dbf7dc9783a03524d0cc3a2095ed015d6a1ea555be63f", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11386 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP190_PD_NP21-57_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "7e0233029d601b335136ca2826caf6a1f82bd8ed02e4059568a0ea77181368e4", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11294 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP191_PD_NP21-208_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "c276c16ac9306070e03f88ef1f81626196e298983279404e75ebd36cd163e196", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11343 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP192_PD_NP22-55_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "8bee1d884dda5abc884fdd5a46235470c69203f3ebe64fc115ebd00c6bf9e558", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11296 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP193_PD_NP22-55_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "1b539618d947ac9d9e4eb290ea66cdbc3f3e167df9d5396ea56b8ed1b1774634", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11287 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP194_PD_NP22-55_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "f836a10f5048216fa432afea18fb905cecd652cb8be2ad25b71489ce6b67c5e6", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11281 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP195_PD_NP22-55_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "a19b376ecd48bac698c0eaf5b326d5d4ddf917a9f86681d355120941ca787ba9", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11300 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP196_PD_NP16-285_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "36aa514b8fcbd9c3d7de8a9c26324bd7cd2b28d45bfc29d84d3865d643f716d3", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11321 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP199_ctrl_NP19-218_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "a7f521ebdab1b749ced46462a458c9ebeefff4a5cda310eb783c14b8a2294eb6", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11382 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP200_ctrl_NP22-37_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "9278af3cdeab558fe29bec6ef579679eb3e9d3e871494522b63ba8f9882dd0b8", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11372 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP201_ctrl_NP22-75_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "ad57714d9e959c87c42a917b3865d9d2a31094eb2905fb8c931758495fd8671b", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11373 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP202_PD_NP19-137_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "fdf0f8ba0f08d74ff5edaffec22f9eef15354374b179a85cd7d21ceca62977fb", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11345 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP203_ctrl_NP19-218_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "c6f4b76239180c677f42bf316ee697e3127a50ccd86602f0f7777057199b7dc6", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11374 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP204_PD_NP21-04_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "571f98f140a02aec7e1d7818714074924f7697cd12da0b6a10e7a1f3df970230", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11310 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP206_ctrl_NP22-75_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "0122fe91ba9d7fe863ec5e63836a68a1f29ba554a2e8bc1cc57281ec1f743dbd", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11314 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP207_PD_NP23-21_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "4240bbcf2f3fb7b206b6048cd0be226a6cfc7ca6412de2b34516625532bc7c6f", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11289 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP208_PD_NP16-285_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "9b7894ee13f3b5a1cf5e4533e83af2de7c9ace52e360e7ff5be77a55d40d3572", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11298 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP209_PD_NP17-232_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "db825ae4e69c380d8d30401d2bbe1a5b5ca9c8fc16128b0d45025d72effdb3ce", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11304 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP210_PD_NP19-91_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "a24741da40ce3dc0be7758da1361341f298bc23c4b7843612b437a8004c0dd17", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11272 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP211_PD_NP19-137_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "daa75a6cdb77089396311e434716101ecb554ae78fdfda43d93b5169f668603c", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11303 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP212_PD_NP21-04_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "fa2aafcd8fde3157ec870b2be5d5f5cd24bb7d70734c6103553c688443abf80d", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11282 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP214_PD_NP16-285_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "4145f6cfefca594e30a995f3340922669ef6e859deb43667e8ae9be040d5c763", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11324 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP215_PD_NP17-232_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "3b47d78c3b1e6086425f3ff834428b103d27a40956f7c94b71a9e4a886760064", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11322 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP216_PD_NP19-91_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "9fd059e7d2266f3dd1231bc9ec16992624a329a7e8609983f3e53f54e441f7a1", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11299 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP217_ctrl_NP19-218_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "bbeede95cc363341d38a66a2783677c87ae6dc1868b9bbcf1f6c5789eae2c4fd", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11383 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP218_ctrl_NP22-37_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "5618800b29260e0e97711edd0d9048f0f9d9d77fe8ecc4666f4135cee5cfad6c", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11349 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP219_ctrl_NP22-75_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "70af346551f5ab9c7b326b88416ce502d69f9de37b1eaf59f0ac36719e026757", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11354 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP220_PD_NP19-137_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "82ad44df3eec3721f036791e5314b32f936e8cac168c4122627b0f266564a316", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11328 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP221_ctrl_NP19-218_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "2f7905553162b5cbad1fc687057ff93b2f69f87a8224cbc46c7fa8863f44891b", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11377 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP222_PD_NP21-04_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "2880ae85189694d26730916184e0de8a226d858af824332ce6265c145887cac9", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11288 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP223_ctrl_NP22-37_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "75ecd30ff31beab9de8825cc6a04e5e20160d1ac1e55f4bd2e25cce50588ad64", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11356 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP224_ctrl_NP22-75_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "68530083aaba53d2a19a7045681c5e0acb17f10766feb5e0cc14cded72b0830b", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11352 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP225_PD_NP23-21_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "5d2e8b6201a17548e2fbc09a7e04cc9921a491e24ff008daffee580983d5e833", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11291 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP226_PD_NP16-285_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "d196a83776dd2de794081430558fabfdcb305dcf5d1d200b5a62d2aab1ca741a", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11336 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP227_PD_NP17-232_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "c4d26f89360cdaa8cadfe69964eed6e922ad49005251b030a046154055db6b86", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11333 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP228_PD_NP19-91_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "cbf470302b12771bd7eaa4da6679eadef3afc57809f90d08efc9818f5a0b4fce", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11302 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP229_ctrl_NP19-137_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "dad15bcf418b681190d1852d2bd24db8e748d102eed68c6a7e02aa178365965d", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11384 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP230_ctrl_NP21-04_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "adda681849114d8ed91317797dfc43ecb49cea9f1df08e2cf46100f0c4164e77", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11357 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP231_ctrl_NP23-21_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "7e47ae37d7bb81225589ba322e559d26e96e06ec142f8cdc78fff9772cf368c6", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11390 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP156_PD_NP21-57_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "08787309efb5c6a29fb846a75a8d0b303281c146817b1b751e19d9bd49fd8c1c", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11262 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP157_PD_NP21-208_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "00805d534bff2c870efe632970fe879e191122993e70a3f0d7be903ab151684f", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11283 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP158_PD_NP21-217_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "0515886a2dd8081309054fab90fc4fd9190f0572053ea0fc464162678f51535f", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11401 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP159_ctrl_16-119_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "cbf401ef58701e3e95b1af405a22c1dc1d475c9e20ea1634058998ee92ebd945", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11311 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP160_ctrl_NP17-216_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "561ace07133a05bb99a1b568edfb8910f9111bcca6e2924eec5a376fff621640", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11405 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP161_ctrl_NP18-46_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "7e2c010de102b7d14d4c6a8c8937461def1c29d995d52d744d31ebdc2496ebdb", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11326 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP162_ctrl_NP18-148_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "3e2e25f59f044569c7efef425b6679a7d7efff0f06aae71b959532e9c8c1cdd1", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11348 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP163_PD_NP21-208_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "6be38e61908b456ea9bc4d803cb4c60aee0457bc3d90625a0689beb5c1fff90e", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11292 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP164_PD_NP21-217_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "06b1746f2fcabc998bfedaa920be28c056835082a1642c1d2bbdf70660f0c439", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11285 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP165_ctrl_NP16-284_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "ef65c5409b183a6ffa423a0c713df8bfe8a02b393bd4ab41183ff6056dd866bd", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11366 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP166_ctrl_NP16-293_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "c45fde68769e4fcc6ea9c5ae23aeffcd2b6eee6fe622b3c59d0c1d74813d189d", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11363 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP167_ctrl_NP17-20_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "3f7ce60858dd03eef213c8f48859b93d6321fd2c25165e5236fac0a2a2857dc0", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11323 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP168_ctrl_NP16-284_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "b3a44d087c9f5ed4e2dacfde5c578eb125571f6c1f3bb26fd0aa4a9c466487de", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11358 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP170_ctrl_NP17-20_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "059c88534fa1addcc343f7ce3e26895909e9edc8c14cf480325f6143f0aaf280", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11316 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP172_ctrl_NP18-46_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "f9fd72c6380c81975333e42e5c01884606af46dc91ed828f8021668f2ef0d648", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11341 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP173_PD_NP21-57_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "f7c8c0eaea5d72335d8f49b90756e9fd100cadacc01ab7848aaa6f241b165c3f", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11280 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP174_ctrl_NP16-119_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "698713cf42a6b7e907579b466d8a41ea6c3f4c6bfe583365abe72fbb8deffc89", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11353 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP175_ctrl_NP16-284_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "de4696e16d93240cffcc653d58af93607e8664dc7a431266682f19fbaee0b555", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11337 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP176_ctrl_NP18-148_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "b96a00e28ec6256b4d98afcaa74bbca279fe8599445e6da18b8c8f13a043cefa", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11359 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP177_PD_NP21-57_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "8a9563207d365785c4c35883a04768c4b3a2ecf0fa65d444e064557db10e115c", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11260 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP178_PD_NP21-208_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "73d168fac05ac388406e3c71b07f488612453f80021fadda568b69a1ab9c6fd6", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11267 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP179_PD_NP21-217_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "1d962384248e0f841fca80a4caaafd89a6186bc747aad9d9b512a086447949a7", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11266 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP180_ctrl_NP16-119_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "05159f6013750324596140d3959bb1ea348779c9d9659d62e767ae60d70b7f96", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11315 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP181_ctrl_NP16-293_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "ccb20bed085de664d64eaeda7948ad921ad45cf2a99b49cdd3ce2955025a28dc", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11335 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP184_ctrl_NP18-148_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "ac3c2c657d33ce1f0c7025f7f86b143fa20c43491d1b629fb267aff7657459a6", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11332 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP185_PD_NP21-217_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "05c0389d7def7e39ab8923da1884368c3f90d661b235faad64609fbb7516298b", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11284 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP186_ctrl_NP16-119_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "73e47f967a56e95435af34701907e8898e13d39dbf11657bbbae814d2d6b48d0", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11355 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP188_ctrl_NP16-293_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "b9c371bc2e5f48bca2a6e8cdfc4661e0f335262fa874224e20da2477fc397e41", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11360 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP189_ctrl_NP18-148_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "60bcf59546250539397c0affa3fbc74416a7d8664542bf5c37359682162447e8", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11351 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP190_PD_NP21-57_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "77c8aa49cda44b7ef6247b5cf90b798e415b40a4fbad9e7d77c3fdc767b05d43", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11268 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP191_PD_NP21-208_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "9add519e48c429307d33b2913413363bb4814d91f9735a7cfe899e666a703f49", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11297 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP192_PD_NP22-55_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "9e7e6e3e15279087342b9a0555c35d21ed41a6e3c35b03c83de3a330ac128f81", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11271 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP193_PD_NP22-55_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "0d0e5b0edf0237e3e3b13e313614142fc1f4e0a32fd0cca2b8ecde0f74bd9161", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11263 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP194_PD_NP22-55_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "e7d5dd045a39cea21083b3c66809551d35a4360893d1404b7fc7767b63327edd", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11261 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP195_PD_NP22-55_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "c3f4100f7c1cf3c2d7f4e3a3272abdada6abadf7119a2bda6e774722aaf1c839", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11275 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP196_PD_NP16-285_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "dfc5771951cf9e364f5408cd90ba289790a3f620a6c281ee7e989cab6ce273e9", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11305 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP199_ctrl_NP19-218_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "db9956aef6ffbc162da950378691383c5794323d7699615c97e453ea2fb941db", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11364 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP200_ctrl_NP22-37_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "81faf2bfd52ab83d1756b70a871a57f09800809e5d8e39c2668a162286df5925", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11327 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP201_ctrl_NP22-75_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "203ee4e4587980cbd573af6e3de4066ef6e6be11df4ac5d5c78b9040c1307e2d", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11319 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP202_PD_NP19-137_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "ff58e215a6667ee0c4862182a536d1ff662fdf982940d2fef5334e184a9d97bf", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11309 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP203_ctrl_NP19-218_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "a195965b768c5f5d9a67db283088163cd116a1a75af8ddc13549b9779d5a46f2", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11330 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP204_PD_NP21-04_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "d809a45e84e2406cc2cee4c9c3e2e09755c0960849a9e843f8be300d929866c9", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11278 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP206_ctrl_NP22-75_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "1133be4906021739853901fbbbf7c936635e8f69cda3da62ff0755a35c3cd20c", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11286 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP207_PD_NP23-21_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "13f61bbdaf380bd9da364b1b1bf11e534b7c34409f0d402b29d961638172380b", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11264 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP208_PD_NP16-285_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "83cb0b8362358011789018f7fe240630123426101a576deb0f70e8210fa8319f", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11269 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP209_PD_NP17-232_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "1c529719ed8fb7feab0bac4af69e6c482527bbda3fe28941f669eaaf58550167", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11265 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP210_PD_NP19-91_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "34eb0a80571b1ef3e335051fc1c6db780245a21a86faed4c70e192a4bcc33f1a", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11259 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP211_PD_NP19-137_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "a3dbd55d3a24618d0f0e4636337e8a030ce645e303959ead859f4daf01cd23a9", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11273 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP212_PD_NP21-04_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "2a532609e1764c52e7aa6605641b8d5ae6ce551e05fd6a1b39d2df1ffeb58ec5", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11258 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP214_PD_NP16-285_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "844c23ebdfad03f986b468c45618399edb41a9047ba481449ddde317b03dd942", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11295 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP215_PD_NP17-232_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "757e238f179f4a78365c9f452acbab4623806fc97df703418db041e4b98db084", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11293 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP216_PD_NP19-91_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "97c329f2222a6bba38c03a860e66a04c4f33f89dea99f8ef9c37a772e8b36d08", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11270 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP217_ctrl_NP19-218_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "2d073f82b2a2f2c55920e04a0d839d58740581c2ed32aefc8bf138307ae16332", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11347 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP218_ctrl_NP22-37_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "2e76531658edfb2fdbd3a826ed873d166896b8ea9edf518595c8782857a32c05", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11320 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP219_ctrl_NP22-75_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "e67dc843069f394acd59bc7a0f229171d6aea0aee5d08151428679eff130cdea", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11339 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP220_PD_NP19-137_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "fbee641ac6f9a1b07fc0d823fff5dfaea23921423527ce75b171328347280848", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11308 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP221_ctrl_NP19-218_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "2566effbd6ca79d27bb791cbee4fc8a274b43e8cabe60c6a78d32790802f0ee8", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11346 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP222_PD_NP21-04_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "ad345bdd8e91dd1eccdaa53464157150b2f0e68110c837adafee3d7e04f95806", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11274 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP223_ctrl_NP22-37_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "c6bc5380f738a108efe2b6c00a718879ee64d9466fb5c13770d371c969e53869", + "language": "Shell", + "lines": 18, + "truncated": false, + "block": 1, + "row": 11402 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP224_ctrl_NP22-75_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "0c8cdf575b3da146fe8163beecb78409c8e841cbbc50499084e73e841ac64414", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11317 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP225_PD_NP23-21_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "ea038825055b86ba3af3377437a6dfc378206af82ed11b781f899639f8c7a2d6", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11279 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP226_PD_NP16-285_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "e41e88f7f21d12a9775e85c9171911a8c1ba830b3c27de1a969c73a4be204ca0", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11306 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP227_PD_NP17-232_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "a3c55b4fad00f692e7a866e84235d13f7a32238a7c03f3a7593e5c713c423077", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11301 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP228_PD_NP19-91_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "d0f4f1daf12205dc0dacb95f7997a310b664a25da4b663537da3f64a64ea5e28", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11276 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP229_ctrl_NP19-137_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "5df793613826212ca31d246f44ded9a3d575e1d43b6209be516f347cc90baeb0", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11350 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP230_ctrl_NP21-04_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "5600803fdf0d87282925e1cfcfba2f20415e4a6806594b79024413e45ffb712b", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11325 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP231_ctrl_NP23-21_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "cb31969e843693829516b99206d29fa3fa6457955739491b07e960658546fb34", + "language": "Shell", + "lines": 15, + "truncated": false, + "block": 1, + "row": 11334 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP156_PD_NP21-57_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "590cc76880bf9ccf60f5fc224cfe9cd3a109ca5424e14838b337232189eda94f", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11191 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP157_PD_NP21-208_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "495e2aa310d6e1ecad0e6e6c4def992134b4d14d8406e17b504b8e73fbb94705", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11210 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP158_PD_NP21-217_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "37b6a408263ae76bdcad302381a4d6cfd5396c56935a25e0316d379531686804", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11209 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP159_ctrl_16-119_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "10d2ceabd866c5dc621974ede596d9b252012096e2dc5a5935d685db2aa04c62", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11206 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP160_ctrl_NP17-216_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "5f12063619439187ab45453f616c1b5785c0fc754de1c478f39ba941eb04ef97", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11241 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP161_ctrl_NP18-46_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "f57672470affb8b153f1822b1a7f2591d5dc5dd212cdb9b5b72f1d75e2d7fab8", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11236 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP162_ctrl_NP18-148_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "ae56c7c954529d43a4f5c2f00a2402d9fa033c4a9d818a1be75136b030d529ca", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11246 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP163_PD_NP21-208_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "bb6501d3a429d571a6b0433b39a246d582354f1b4ed6f0df20037f0e7200766d", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11216 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP164_PD_NP21-217_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "f4b5c0669b807b55be3b0b64cd07b10b93d0874190a2e1e0a9a21178607679fe", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11217 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP165_ctrl_NP16-284_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "b9d11def7b021b50961d6abc9f42115c13b43616e693c06d0f34e9e7dc02a732", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11247 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP166_ctrl_NP16-293_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "34352003a069fa261150201d5185074b3b101b4eb72be9967d7a54cff687ca75", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11240 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP167_ctrl_NP17-20_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "b78813fe21754d026a17219e57317d386864be3f6d8e4e3665bd28cea852342c", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11228 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP168_ctrl_NP16-284_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "da990d68d1340c6ac12ead7d188ed9b790c6f6a7e9d4234d879f7c413b2d95f3", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11250 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP170_ctrl_NP17-20_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "569a1eb5c139edfdb81b23eba7bf70eba5598f9274072f9024425fdcd087c46c", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11220 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP172_ctrl_NP18-46_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "e8914bbf234f120ae25a701b40ad51eeae844e2986f42ba18cb7a73d99422005", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11233 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP173_PD_NP21-57_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "ecfd0f1524dc9f3d0a06de7297791be61ee067bb00b33503d32dd0b3a31038c9", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11200 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP174_ctrl_NP16-119_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "cb3f043c09008c6e37f2d793113ab88fda31ac4ec50db3f3c973df612a9ee5d7", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11249 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP175_ctrl_NP16-284_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "f1da5504cc09875773cea7cea3b530afb61c6ffd93c187007aa32f4b59361d43", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11235 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP176_ctrl_NP18-148_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "c6a425846af1cb4266b65e66c120a3bd1a4308ea396b45f3518c1c86f930cf7a", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11248 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP177_PD_NP21-57_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "6fe434723243a9a347e3c38ade4f018b8ebb46df9daf7b8cceced073c41c56b1", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11184 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP178_PD_NP21-208_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "8f3db4c9cae4ef5a6a286eacf7c28ebf826075d6398e2fec9c1ccb885e496dc6", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11194 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP179_PD_NP21-217_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "e78390d35b5c4b88f9a96dd1e3d08fc6d00d76aae5b86e356d949c85b7f61545", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11199 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP180_ctrl_NP16-119_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "a26529df9a93ab1734b34cdb53f2454e39826570f9ea37b874ec9478df8a7b37", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11225 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP181_ctrl_NP16-293_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "df40e88b861c613b624be25227875e6fa38425fbfa9d272ccaf3023266c41051", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11230 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP184_ctrl_NP18-148_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "d738bc684cf507323da34b068369d05bdddceccf48533d552ddffe7d6c9e4719", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11229 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP185_PD_NP21-217_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "643bb2fa725b74c82711b55e148bbcd899dc670509778a8542c6ecc5397a4b1f", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11212 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP186_ctrl_NP16-119_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "6c452eabf0344462c7a583499a7873d85f5350cfeeabf0a86525820cd64c7842", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11242 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP188_ctrl_NP16-293_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "3057c3bbc11f282dc460e4b19cab4e85685e489a187a66f0a73b9de9ca49fd9f", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11239 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP189_ctrl_NP18-148_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "2c45a4f4f2eaeee281312d7769445985b61b043acb47c81838f49c23bcd73d35", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11238 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP190_PD_NP21-57_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "f26180bc23dcc6d6254be198234bb9f2b00811cff1ccfdc263b1bb4bcc47b745", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11202 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP191_PD_NP21-208_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "0f6dfc326a1c55945f0439ffd9fd6ac83216c71f4e2ac437d5ff8b76bb2c2a6c", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11205 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP192_PD_NP22-55_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "034bf08498086de50652d500595f8bfc3485a4d45ae7cb8be232120ad291c9b9", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11186 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP193_PD_NP22-55_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "79d761229f46de66706066b7a6907b1fa7693232770a23dc7f966b06f773a516", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11192 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP194_PD_NP22-55_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "874b51c34d512ab1bf395b50448f1c23fcd692133078f0ea58470bca99b174d2", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11185 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP195_PD_NP22-55_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "986d590121e29a11abe697b5de1da70501dc2e64b75571a6f375b6d9458926ce", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11195 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP196_PD_NP16-285_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "0ec1a65e9238f4fdb3d73b98281c585be50c61aa4708f09e05b24e47b858cb54", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11204 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP199_ctrl_NP19-218_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "909477e96c849b493975c9d509f5f8ad69c693a7a1e66ff93a41ed2f8dce4ddb", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11243 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP200_ctrl_NP22-37_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "67799d84d01fe26fd6d5f41642c3ee092feb95f8a3d479448b2cf7c993fd61d8", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11221 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP201_ctrl_NP22-75_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "91192b1de88bc004aff2a38d852f4f9366e9dfc7f793032a4b2b47c008faa115", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11222 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP202_PD_NP19-137_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "12c10237d33580aba4e78c5dcbd4ee1f35f09ec4efe896aac182b779a01179c1", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11208 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP203_ctrl_NP19-218_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "a889be343ae70cd3a01fb76ca155af0cd89b5d7a65de081e1ebb8b104528a821", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11226 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP204_PD_NP21-04_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "a16f753270b068d5eb73baaeadb1c23bf42114ee0d24f9c718d7c00c03e94cd6", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11196 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP206_ctrl_NP22-75_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "116c1a9808289f10f2f6fd444690cd4f6740640fe8b62a581586f21f9186db7c", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11207 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP207_PD_NP23-21_AMY_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "0982b0b581bb3174dc01d4af37735fcc9944a61d3cf4691a54d0676aff1923b0", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11187 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP208_PD_NP16-285_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "811aad1aa63dc54d08c3a8a3029b2b1b404b003af5555d9319da3ac63f849bcc", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11193 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP209_PD_NP17-232_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "f1614be1648693fa4f759a3ceaddb227143b03dbaaeeb698bc0c7e349862a584", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11201 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP210_PD_NP19-91_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "119dea7f3ab2863d94a1c8089e2fa3afb94d6f345f14941843a2269989a9fd12", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11182 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP211_PD_NP19-137_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "224be1a6c4ef424552d7faaca16c7b1a800d915d66c40cccfafd9d02a66f34c5", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11188 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP212_PD_NP21-04_SN_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "3a9867b55770ba6657bebf0f6d46b2b7c1031b6cda66c737fd236c234957c3b8", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11183 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP214_PD_NP16-285_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "6dbdf9acc3f56fe353f2afdcddd9be0b1a8aef238b423de7e28377cf10c3352f", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11213 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP215_PD_NP17-232_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "99d7a505ec97e7b86b50289a5452003f0ae3153ac9baada8c6eeac54e4ae01ea", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11214 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP216_PD_NP19-91_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "a78cf6cf1d32762a02b70e426f982759c4fe5937665f067b7c4b15e9aacb0229", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11197 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP217_ctrl_NP19-218_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "ae3a1d35e0e45b693ffbc0a29c006e5b4d19fd1a826be234b70454d5faeeacfe", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11245 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP218_ctrl_NP22-37_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "ea389af2758895eb7263c48c706f36960a7794a7b5c84358c8505fa1c46de057", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11234 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP219_ctrl_NP22-75_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "adc3da828c34f1c26fdc93388d4143e9b9721904db859d106f5f5579f34a8284", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11227 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP220_PD_NP19-137_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "5ddbd3d419450fbe55882b289b6501ba24361a493526934a0a5bcffe31d9890b", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11211 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP221_ctrl_NP19-218_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "9f065d41fb8f78df7b0fe62f29a974d7ec3f48612b6d3548a3325c9c7ec0d423", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11244 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP222_PD_NP21-04_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "22a9bfa205f4252a64a8544a07e722edbe64098b187a6e0c759f403b1aec051b", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11189 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP223_ctrl_NP22-37_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "9be1d4325eb886bf3df86bcb2bc92dfbc3c2ce7f72b6aa137ec626de969cb2b5", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11224 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP224_ctrl_NP22-75_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "e5c00075112703cc528f85bc9d3fb4e0eee76f44b11167ca2f88ab09ec57f73a", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11231 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP225_PD_NP23-21_PUT_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "4bb330551e43b0f41f96886e8e43619f82bdce7ab1b3a757c74a83b7f86fdf33", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11190 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP226_PD_NP16-285_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "b545ba5bde500f1897c9e7cf3b150ba85e61848b3b36e1ce9b8e8526b98be5ff", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11215 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP227_PD_NP17-232_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "01244ab150616956731c4b8ca1be28a999df1a78d992fc67a111fc725ff2b0d2", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11203 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP228_PD_NP19-91_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "d56c48f6d19f2b3445582ba382103ba18d9dc6aee92be991e981bd6a253fed7a", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11198 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP229_ctrl_NP19-137_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "14d8ab81d105e3bfb92683cb9e857a294dc2b2fa17c414677b3193160fc87910", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11237 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP230_ctrl_NP21-04_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "943d30c13d995f96524933e543cebda374510f6521a296209640f08653608d8c", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11223 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP231_ctrl_NP23-21_PFC_bulkAligned.sortedByCoord.out.bam.sh", + "sha256": "e60cdacd3da34b59f3fa4b780000892e689268ba4315080253bead37335809f8", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11232 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/processing/ERVs_expressed.Rmd", + "sha256": "4f27105dc66559ae5e62cc3b9b2ff47b56f6352adce1950826b7b153fa64ad4e", + "language": "R", + "lines": 153, + "truncated": false, + "block": 1, + "row": 10380 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/processing/FL_L1HS_L1PA3_expressed.Rmd", + "sha256": "bad24218b2bdb5b767267903a0382698275533fd5b7595b1f4e22e7112b57274", + "language": "R", + "lines": 166, + "truncated": false, + "block": 1, + "row": 10389 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/processing/QC_normalization.Rmd", + "sha256": "702c81d2db70d7bd20e179846314444941d2bedc6686e0fe95083d0eae4a1ae0", + "language": "R", + "lines": 93, + "truncated": false, + "block": 1, + "row": 10238 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/processing/computeMatrix_ERVs_expressed.sh", + "sha256": "ff1b40b9bd1b57836a0b89deb7949bce69bc025b2eb939299b0fce5c700c1b96", + "language": "Shell", + "lines": 26, + "truncated": false, + "block": 1, + "row": 11644 + }, + { + "path": "code/ASAP_PMDBS_bulkRNAseq/processing/computeMatrix_L1s_expressed.sh", + "sha256": "6a0c2f9a4339f525d55b722f0fd598b4d1f5f0baf694b55b8e8aacc3f6322df1", + "language": "Shell", + "lines": 39, + "truncated": false, + "block": 1, + "row": 11668 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/preprocessing/main_asap_AMY.py", + "sha256": "bdc6c5aa124594b78e1844940d918116f80f760ee077905fd71f938b9291591b", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 1, + "row": 7393 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/preprocessing/main_asap_AMY_microglia.py", + "sha256": "7519a549450309bdc26803a3fb0dbcab125ec95bd5322684478d0cad75d08d11", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 1, + "row": 6923 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/preprocessing/main_asap_PFC.py", + "sha256": "bda26dcbc6e4139712e80e0bbc0b75b051e4912f70cdc7c07a8a84db34ef2791", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 1, + "row": 7428 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/preprocessing/main_asap_PFC_microglia.py", + "sha256": "878a93572954ffac647f9a1a885c9f4e5fee08c25e5c177ab4cd3147edd3d9e7", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 1, + "row": 6786 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/preprocessing/main_asap_PUT.py", + "sha256": "7d80409931ef5d5bf2f56ff43dc77e57121673014c30481949c8c0d2c15c3349", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 1, + "row": 7414 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/preprocessing/main_asap_PUT_microglia.py", + "sha256": "090558187035ac51a20e054e3ec8eb9028a1293c7d9f546685e2b5806cdbd6f3", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 1, + "row": 6489 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/preprocessing/main_asap_SN.py", + "sha256": "6ee243b6e14c058653694885374db66e0ac5f4622554bf59c6c44c15350e5b20", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 1, + "row": 7421 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/preprocessing/main_asap_SN_microglia.py", + "sha256": "e2a5d0e479005275922027e555b39686532bff304844152b1f50db9064201450", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 1, + "row": 6516 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/processing/ASAP_PMDBS_snRNAseq_PD_Ctl_DEA_wilcox.ipynb", + "sha256": "e48ec2f2f036e008e64007818fbb8b8590654530a273239a2b8cdc24da6e6c4d", + "language": "Jupyter", + "lines": 110, + "truncated": false, + "block": 1, + "row": 1778 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/processing/ASAP_PMDBS_snRNAseq_celltyping.ipynb", + "sha256": "c412722bfdb9cc637d874c11183ba0cc35d382a9fbf3094157bd503d5b4f8df4", + "language": "Jupyter", + "lines": 282, + "truncated": false, + "block": 1, + "row": 1949 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/processing/ASAP_PMDBS_snRNAseq_integrated_umap.ipynb", + "sha256": "9cdaaf5104748c56fd83c95f304c6f9fb75608e68fce8cae98725e2f621b38b4", + "language": "Jupyter", + "lines": 221, + "truncated": false, + "block": 1, + "row": 1892 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/processing/ASAP_PMDBS_snRNAseq_microglia_subclustering.ipynb", + "sha256": "da8f23eb8f91ccffa9821f353b279295f53e3d8bc517db5bee80fd2ebec38417", + "language": "Jupyter", + "lines": 104, + "truncated": false, + "block": 1, + "row": 1787 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/processing/DE_TE_heatmaps.Rmd", + "sha256": "398fb53e2589091dea248a2871e10a65500e9797e13fa6def35c652ab7f13fab", + "language": "R", + "lines": 292, + "truncated": false, + "block": 1, + "row": 10511 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/processing/HERV_characterization.Rmd", + "sha256": "fe61667207824ded9d27c5eef148bc7b3f77a3ab73483920e0c1cdc00d62adea", + "language": "R", + "lines": 172, + "truncated": false, + "block": 1, + "row": 10391 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/processing/HERV_expression_PDvsCtl.Rmd", + "sha256": "f8a5ced98b142db7a4404b5f21a6fbd52084c1f0444cff2b020556d604399ef7", + "language": "R", + "lines": 546, + "truncated": false, + "block": 1, + "row": 10574 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/processing/HERV_expression_PDvsCtl_batch_sex.Rmd", + "sha256": "2691bfb7e5cc48a957707decb851d6af4db59872bac0cbcc0e4ed215aa3f770d", + "language": "R", + "lines": 320, + "truncated": false, + "block": 1, + "row": 10534 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/processing/HERV_gene_braak_analysis.Rmd", + "sha256": "761be2fb5cbbc3e9b0adb3148bfdb1ecb65214de2e6fe30cba6e5fb14dcb3ef7", + "language": "R", + "lines": 223, + "truncated": false, + "block": 1, + "row": 10450 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/processing/L1_expression_PDvsCtl.Rmd", + "sha256": "6a8cda2afd8dd45d6ed26d830494ff05ee02328a83fe9c3b00ea3d366de1ba61", + "language": "R", + "lines": 330, + "truncated": false, + "block": 1, + "row": 10505 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/processing/QC_overview.Rmd", + "sha256": "c49ea2b35a74848fb4b5d05a1511e164bafd60f2f4484dbf3018a4e029b24672", + "language": "R", + "lines": 285, + "truncated": false, + "block": 1, + "row": 10495 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/processing/TE_expression_PDvsCtl_ciseffect.Rmd", + "sha256": "6b4c1cbf0b3a38b3e9f9b1543a8eb040f2c1c953ddafd301bf7a79aaa553a5c3", + "language": "R", + "lines": 303, + "truncated": false, + "block": 1, + "row": 10521 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/processing/TE_expression_celltype_markers.Rmd", + "sha256": "0a03a497363aacb09e10aa8b6c6537f4207c8197c2f88f5cffd8cd81b7033462", + "language": "R", + "lines": 315, + "truncated": false, + "block": 1, + "row": 10540 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/processing/TE_expression_heatmaps.Rmd", + "sha256": "1e7232e0a9bc224d389a9774e887f9b31c3aa1dcb7d54001fcef35d15384eda9", + "language": "R", + "lines": 1024, + "truncated": false, + "block": 1, + "row": 10607 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/processing/bedtools_window_upreg_TEs_genes.sh", + "sha256": "4b2be06acb5f551a67bb58496372c619601470a805aaf3f291387e6a1c030e96", + "language": "Shell", + "lines": 32, + "truncated": false, + "block": 1, + "row": 11749 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/processing/gene_DEA_GSEA.Rmd", + "sha256": "0b099f3f07ba83fa9e11793d2ff4b2e4a6f2426a1a4a7982ab13949277d963f0", + "language": "R", + "lines": 436, + "truncated": false, + "block": 1, + "row": 10562 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/processing/gene_DEA_GSEA_batch_sex.Rmd", + "sha256": "751ee0efda90dab0f121b31a3d0eda611cc56fa52ac687cc43f59dfb3621d5b4", + "language": "R", + "lines": 220, + "truncated": false, + "block": 1, + "row": 10417 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/processing/gene_DEA_stableFC_IFN_heatmap.Rmd", + "sha256": "65be1ff5a5d9c51412480d15d027306d7319127510e4659943636c39064e079b", + "language": "R", + "lines": 53, + "truncated": false, + "block": 1, + "row": 10108 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/processing/intersect_upregulated_TEs_genes.sh", + "sha256": "f32d0331cc94272d7a457d32d852597c701b6aed99dab1cc2c864f9afe972c2f", + "language": "Shell", + "lines": 85, + "truncated": false, + "block": 1, + "row": 11751 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/processing/microglia_subclustering.Rmd", + "sha256": "d56988e5067ffd42833a6f5280c76d6e4a32fe6660f3df9bdd360e62adc31414", + "language": "R", + "lines": 97, + "truncated": false, + "block": 1, + "row": 10220 + }, + { + "path": "code/ASAP_PMDBS_snRNAseq/processing/microglia_subclustering_gene_DEA.Rmd", + "sha256": "14417a826fdcd1be1d90611ac4abe6f462269e0b7d63896b316b9bcbb2c3f151", + "language": "R", + "lines": 301, + "truncated": false, + "block": 1, + "row": 10510 + }, + { + "path": "code/ASAP_invitro/processing/ERV_DEA.Rmd", + "sha256": "05eb9343018053aa116bfeec14aadc42df3d8f0cd7732207beb7c6378a4b872c", + "language": "R", + "lines": 400, + "truncated": false, + "block": 1, + "row": 10546 + }, + { + "path": "code/ASAP_invitro/processing/gene_DEA.Rmd", + "sha256": "d924ca5de366df06c4e99542553ff9897abb7329848ee3da97e7c6d6bc8318eb", + "language": "R", + "lines": 547, + "truncated": false, + "block": 1, + "row": 10580 + } + ] +} \ No newline at end of file diff --git a/manifests/8b/github.com__portugueslab__brunoise.json b/manifests/8b/github.com__portugueslab__brunoise.json new file mode 100644 index 0000000000000000000000000000000000000000..5ff589f824e16ed2d40b7f6c43d0d48a27087ceb --- /dev/null +++ b/manifests/8b/github.com__portugueslab__brunoise.json @@ -0,0 +1,174 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/portugueslab/brunoise", + "url": "https://github.com/portugueslab/brunoise", + "host": "github.com", + "commit": "0a883ebf07b75b0f83c87a00f6b66c7ca44d5298", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "1ab2a3fc87d9763be179af9d85aa570b6c6f40567173b4b44ab71210413bf08a", + "language": "Text", + "lines": 37, + "truncated": false, + "block": 2, + "row": 2611 + }, + { + "path": "Read and write.ipynb", + "sha256": "0f13ddd38bcf2612ff009e6a794512071a4c050849fca4d5f3bbd891bcabff8e", + "language": "Jupyter", + "lines": 363, + "truncated": false, + "block": 2, + "row": 1078 + }, + { + "path": "brunoise/__init__.py", + "sha256": "8eaf47ec252f261b7ac3ac86c352df0fb81efe94226d89a1dd4fa471a972ca5a", + "language": "Python", + "lines": 7, + "truncated": false, + "block": 2, + "row": 1612 + }, + { + "path": "brunoise/external_communication.py", + "sha256": "5f8179f9946d3ffbfa55fbf81bd676fc17929c806833684d9d9b14b8e1e99a0f", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 2, + "row": 1703 + }, + { + "path": "brunoise/gui.py", + "sha256": "a054f8f013c3d8b8229c25385f032b53c1f467a6f20fb7ee38192df6984c1915", + "language": "Python", + "lines": 314, + "truncated": false, + "block": 2, + "row": 2100 + }, + { + "path": "brunoise/main.py", + "sha256": "45daf7781d21b13624b131e2fd5cb578eeb17bf7a6044fe74b0e671eaa2b2cfe", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 2, + "row": 1624 + }, + { + "path": "brunoise/objective_motor.py", + "sha256": "58bdefaa5ce48e5e5dc4ff4e30200d159d00f2170a853dee0780dcbf38e71fa5", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 2, + "row": 1849 + }, + { + "path": "brunoise/objective_motor_sliders.py", + "sha256": "55eba56eb398e3aa1535cafba1e9ab380d2650c266c8f9cea852fb8df6a6a2c5", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 2, + "row": 1908 + }, + { + "path": "brunoise/power_control.py", + "sha256": "8a95e72f3979db08356fc343e84cb188aa5595b596c14dd82df34abaa84355bf", + "language": "Python", + "lines": 81, + "truncated": false, + "block": 2, + "row": 1799 + }, + { + "path": "brunoise/scanning.py", + "sha256": "feeea2750cc37ac07ff6647bbd95d107b8adae012800fbf0dd9f6db47ddca8c8", + "language": "Python", + "lines": 296, + "truncated": false, + "block": 2, + "row": 2092 + }, + { + "path": "brunoise/scanning_patterns.py", + "sha256": "c972a9c46b22e508222fbbf468d466f7eb140f53c0c9bcbf08555bd1e6c1045f", + "language": "Python", + "lines": 63, + "truncated": false, + "block": 2, + "row": 1777 + }, + { + "path": "brunoise/sequence_diagram.py", + "sha256": "ef8b61f60d2d4f9169c0634d3696d496842d34f0a25a99e2e46ea2a65b4ab64f", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 2, + "row": 1638 + }, + { + "path": "brunoise/state.py", + "sha256": "2a8eb0409de3d960d7538d7bc99a5bde6fac2e19e13953c05bfc3a24cddcb7f5", + "language": "Python", + "lines": 307, + "truncated": false, + "block": 2, + "row": 2094 + }, + { + "path": "brunoise/streaming_save.py", + "sha256": "c9df833230d338ad9da0f7fdc21edb9a7874a5fe03c1d99c8c51b28f912adddb", + "language": "Python", + "lines": 315, + "truncated": false, + "block": 2, + "row": 2077 + }, + { + "path": "noxfile.py", + "sha256": "227322c6138eb0db34e1a0d2bd4c6d7a8b7b2b2a052125fde7164019454a3aa7", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 2, + "row": 1661 + }, + { + "path": "setup.py", + "sha256": "36d55791931c7bec118280e6a1b90ea3668717163dfffc5bd21be99d94ee4d2d", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 2, + "row": 1695 + }, + { + "path": "shutter_controller.ipynb", + "sha256": "a554418f883949ba4f6fc573a5030da6e0c96db8a64325f53f8055ee76c6fa8e", + "language": "Jupyter", + "lines": 42, + "truncated": false, + "block": 2, + "row": 1007 + } + ] +} \ No newline at end of file diff --git a/manifests/8b/github.com__rrl-uf__rrl-momentum-beds.json b/manifests/8b/github.com__rrl-uf__rrl-momentum-beds.json new file mode 100644 index 0000000000000000000000000000000000000000..9fa3632a70bb911a135834be66888b8012af52d7 --- /dev/null +++ b/manifests/8b/github.com__rrl-uf__rrl-momentum-beds.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/rrl-uf/rrl-momentum-beds", + "url": "https://github.com/RRL-UF/RRL-Momentum-Beds/", + "host": "github.com", + "commit": "c6d0e4a572a63a7b6ca1195bda33daf1d1401e7b", + "license": "CC-BY-4.0", + "license_confirmed_by": "license file LICENSE.txt", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.txt", + "sha256": "f5b745ef98087f531e719ee8ca6a96809444573ecc7173c6fa68eaad39b3cc3f", + "language": "License", + "lines": 395, + "truncated": false, + "block": 2, + "row": 1153 + }, + { + "path": "README.md", + "sha256": "d21fee618ea016eb81911527677988849f9e82b71bad0b5a0e9dd56416c21ba6", + "language": "Text", + "lines": 2, + "truncated": false, + "block": 2, + "row": 2584 + } + ] +} \ No newline at end of file diff --git a/manifests/8b/github.com__stardist__stardist.json b/manifests/8b/github.com__stardist__stardist.json new file mode 100644 index 0000000000000000000000000000000000000000..c81efc1db384338713222510789d26ad36da9a89 --- /dev/null +++ b/manifests/8b/github.com__stardist__stardist.json @@ -0,0 +1,543 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/stardist/stardist", + "url": "https://github.com/stardist/stardist", + "host": "github.com", + "commit": "e80c6de700693bc228ed3c9ba1dc19c3785667ee", + "license": "BSD-3-Clause", + "license_confirmed_by": "license file LICENSE.txt", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.txt", + "sha256": "c279e190706f46dd920854b64d0d823a33be1981c187f581eb432b273f797492", + "language": "License", + "lines": 29, + "truncated": false, + "block": 2, + "row": 1146 + }, + { + "path": "README.md", + "sha256": "1ba1be7eabcce90ef75f7f85f88b31ccae4cae8bca96290e409bfd2bc61048e5", + "language": "Text", + "lines": 334, + "truncated": false, + "block": 2, + "row": 2658 + }, + { + "path": "examples/2D/1_data.ipynb", + "sha256": "667fd623e4ee903ae2ea197583f88b636e966c33c7f65413dd213e133ccd843a", + "language": "Jupyter", + "lines": 110, + "truncated": false, + "block": 2, + "row": 1024 + }, + { + "path": "examples/2D/2_training.ipynb", + "sha256": "0eec9d5313c6e0dc26ccbe77be7162bd335dce7c2997cbba8bd2eb696d77bb26", + "language": "Jupyter", + "lines": 293, + "truncated": false, + "block": 2, + "row": 1076 + }, + { + "path": "examples/2D/3_prediction.ipynb", + "sha256": "d4ca2d793e271039aa19177a02d7bf317f6f64caca98350d6ce86456f0c4267e", + "language": "Jupyter", + "lines": 158, + "truncated": false, + "block": 2, + "row": 1035 + }, + { + "path": "examples/3D/1_data.ipynb", + "sha256": "e2bcf5279558cd7f5894272ff96af1ebf815ae430cb461924ade40ecacdefb65", + "language": "Jupyter", + "lines": 137, + "truncated": false, + "block": 2, + "row": 1031 + }, + { + "path": "examples/3D/2_training.ipynb", + "sha256": "2ba5999386f6505e587490f29ed698e778effbb737e9492ec0a8bd338971d1ec", + "language": "Jupyter", + "lines": 315, + "truncated": false, + "block": 2, + "row": 1081 + }, + { + "path": "examples/3D/3_prediction.ipynb", + "sha256": "14f50616a7b11b7e94a71e9dec5da3fdbd044a7e91c2373f763b1f1654208431", + "language": "Jupyter", + "lines": 138, + "truncated": false, + "block": 2, + "row": 1033 + }, + { + "path": "examples/other2D/1_data.ipynb", + "sha256": "4b41b438c9a78d68ae56e7b33c13c01e82ed3bfa7e03a5f98d0e35312722f3b5", + "language": "Jupyter", + "lines": 161, + "truncated": false, + "block": 2, + "row": 1032 + }, + { + "path": "examples/other2D/2_training.ipynb", + "sha256": "b963c6cd9a7eefb11d37077707e2a3c6d58d92f331f927c36baddeabc26d6d8d", + "language": "Jupyter", + "lines": 190, + "truncated": false, + "block": 2, + "row": 1049 + }, + { + "path": "examples/other2D/3_prediction.ipynb", + "sha256": "f2b1e6d58ec9649d64ccde18bc40567d46967953f7a66481442e35e025d421da", + "language": "Jupyter", + "lines": 155, + "truncated": false, + "block": 2, + "row": 1042 + }, + { + "path": "examples/other2D/bioimageio.ipynb", + "sha256": "c910e5ed83d3a249f4031954ec7727e0ff5c89d9d657958e8e27ce1e314dc9fd", + "language": "Jupyter", + "lines": 97, + "truncated": false, + "block": 2, + "row": 1023 + }, + { + "path": "examples/other2D/export_imagej_rois.ipynb", + "sha256": "4aad15ee122eca883e13ebdfab6e1f5c982acc98b0b9dcc5988e256ca4fada8e", + "language": "Jupyter", + "lines": 91, + "truncated": false, + "block": 2, + "row": 1013 + }, + { + "path": "examples/other2D/multiclass.ipynb", + "sha256": "fe6a1548b4c047c4ec549598779f9ce07cea92a9be4e9487b66d3fe3a875820b", + "language": "Jupyter", + "lines": 383, + "truncated": false, + "block": 2, + "row": 1088 + }, + { + "path": "examples/other2D/predict_big_data.ipynb", + "sha256": "38f562f616b715d643eaa51bcc547ab04546dce1fa0cfa01dcd01729343ea2af", + "language": "Jupyter", + "lines": 198, + "truncated": false, + "block": 2, + "row": 1051 + }, + { + "path": "extras/stardist_example_2D_colab.ipynb", + "sha256": "467247d46afcfa1c35ed855573bd88b8c8dce95f6c2cc0aae1ee2737dcc35e3c", + "language": "Jupyter", + "lines": 429, + "truncated": false, + "block": 2, + "row": 1093 + }, + { + "path": "setup.py", + "sha256": "36edc5a1a59030ef81b79890e443dba037d5f7a85252c9678ce050fabd5a6afe", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 2, + "row": 1991 + }, + { + "path": "stardist/__init__.py", + "sha256": "7e89c233068a12edb2a7464d0477383c79999ab83c5ab298c314ad8e676f635a", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 2, + "row": 1747 + }, + { + "path": "stardist/big.py", + "sha256": "85390c50e77a3102482eb7c6d4fc87fab070caae845de00891e755e5c3383832", + "language": "Python", + "lines": 624, + "truncated": false, + "block": 2, + "row": 2189 + }, + { + "path": "stardist/bioimageio_utils.py", + "sha256": "32af04843436ee11ee251813fbba753cb5857e19aa0fabd87a3d3095cc3ccc31", + "language": "Python", + "lines": 494, + "truncated": false, + "block": 2, + "row": 2171 + }, + { + "path": "stardist/data/__init__.py", + "sha256": "b48e9b332d71ba7cd039d9c5e8a216d929c4b107093193033a6e47528b39cf83", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 2, + "row": 1706 + }, + { + "path": "stardist/geometry/__init__.py", + "sha256": "487ef9103396dabe1a7579b99bfa03cd9311ea7245ab096c6456b6022a07280b", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 2, + "row": 1645 + }, + { + "path": "stardist/geometry/geom2d.py", + "sha256": "7f917c976934f76438a2d38d9511b86782c1d402e23a3536b68de6b166769988", + "language": "Python", + "lines": 215, + "truncated": false, + "block": 2, + "row": 2017 + }, + { + "path": "stardist/geometry/geom3d.py", + "sha256": "7a53a7f3864fe8da9bfa8e9a5cd9c9e2079d50f9ad295e4d14d8a10e290a30f1", + "language": "Python", + "lines": 349, + "truncated": false, + "block": 2, + "row": 2111 + }, + { + "path": "stardist/lib/external/clipper/clipper.cpp", + "sha256": "078673c9dbacdf6ed8d46eb0875378f6118b9356e66993065375f064e2914038", + "language": "C++", + "lines": 4629, + "truncated": false, + "block": 2, + "row": 486 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhull_r/geom2_r.c", + "sha256": "66f43d43313bc2eedce2773864265efcb61ecb3eb70fab9e8a7839df6eee435a", + "language": "C", + "lines": 2268, + "truncated": false, + "block": 2, + "row": 68 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhull_r/geom_r.c", + "sha256": "397d6396527433916503bf622ab3c6055dbc6a28aae632e6a2c867d17bfea3f1", + "language": "C", + "lines": 1273, + "truncated": false, + "block": 2, + "row": 63 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhull_r/geom_r.h", + "sha256": "20d395ea93ba4bcc81556a02cee9d27147e8e044d8cd01ab97f03974283a06a7", + "language": "C/C++", + "lines": 189, + "truncated": false, + "block": 2, + "row": 881 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhull_r/global_r.c", + "sha256": "f902776f52438d7dfb5450ba22e699f67c9a41891503dd28169d55dba13fd41b", + "language": "C", + "lines": 2129, + "truncated": false, + "block": 2, + "row": 69 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhull_r/io_r.c", + "sha256": "9da4b8675c640432f7a4c04b4bfb86745dde97cb33645e9386cf1b97cd8e9b6c", + "language": "C", + "lines": 4115, + "truncated": false, + "block": 2, + "row": 70 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhull_r/io_r.h", + "sha256": "18ebdb0d5af3dc6a909492b5b2591965f38f269aae8039cdb28512b984c8500a", + "language": "C/C++", + "lines": 168, + "truncated": false, + "block": 2, + "row": 884 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhull_r/libqhull_r.c", + "sha256": "dd2c0a8c8e6137b67ca8aac6748172585c35c9eea32b3955b23b17db2951485d", + "language": "C", + "lines": 1654, + "truncated": false, + "block": 2, + "row": 67 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhull_r/libqhull_r.h", + "sha256": "a4cd29a9e45a1bc2120e213198d75f754735305eb7c1559b6c61337d7260777e", + "language": "C/C++", + "lines": 1188, + "truncated": false, + "block": 2, + "row": 907 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhull_r/mem_r.c", + "sha256": "104de04ff5f3664f8cfad66e2caa1718895ac058e72302f79c979d4a1ede3cdb", + "language": "C", + "lines": 562, + "truncated": false, + "block": 2, + "row": 51 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhull_r/mem_r.h", + "sha256": "fd35c73c6b013a1668b3d50d2ddf86ca4e7ec96d8595127c3770e2da4b06d66a", + "language": "C/C++", + "lines": 236, + "truncated": false, + "block": 2, + "row": 886 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhull_r/merge_r.c", + "sha256": "0bcbf0dfdbe917cc97f5b0f03eac971211c396a10c0efe35e66b9c928a795ddf", + "language": "C", + "lines": 5165, + "truncated": true, + "block": 2, + "row": 72 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhull_r/merge_r.h", + "sha256": "6ba4c311adbd65e961ac850157cee1d35f235f4baa4995e4112dfce5e8e87c5d", + "language": "C/C++", + "lines": 251, + "truncated": false, + "block": 2, + "row": 893 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhull_r/poly2_r.c", + "sha256": "394551afba8fc6893e3cf4a4de0f9a4e3bee4788fcb9d8962dccbf586dd964af", + "language": "C", + "lines": 3699, + "truncated": false, + "block": 2, + "row": 71 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhull_r/poly_r.c", + "sha256": "bf40dac45d1855a591e43d453cbe7abf5c99e0d0e00f83340de9072e165ac59a", + "language": "C", + "lines": 1317, + "truncated": false, + "block": 2, + "row": 64 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhull_r/poly_r.h", + "sha256": "de5ba9e302475c12b75b0ca488a9fb2161753598561e5a9057fafe2cf3b1194c", + "language": "C/C++", + "lines": 306, + "truncated": false, + "block": 2, + "row": 892 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhull_r/qhull_ra.h", + "sha256": "72b1dd0512e44e541a51b40198b460cf5db81bd422b6639c75ae97e2b767e4c9", + "language": "C/C++", + "lines": 161, + "truncated": false, + "block": 2, + "row": 864 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhull_r/qset_r.c", + "sha256": "96f5a2a2f62252722b03e707e77dcfc45490be0323238b0117d3ee23e082e3b3", + "language": "C", + "lines": 1340, + "truncated": false, + "block": 2, + "row": 62 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhull_r/qset_r.h", + "sha256": "d5fba3e441766e0538a3c451f94df4e4aee6a1276cb537577b18460dfc3588a8", + "language": "C/C++", + "lines": 504, + "truncated": false, + "block": 2, + "row": 897 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhull_r/random_r.c", + "sha256": "1846c52158a88520b248b280436bd8bbf5e42b810e1c04ca4205e14ffea23d17", + "language": "C", + "lines": 248, + "truncated": false, + "block": 2, + "row": 22 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhull_r/random_r.h", + "sha256": "291d98b757b1018532d6e8cfff6d289cbb85329ebb85a531376bcec9eb69ec43", + "language": "C/C++", + "lines": 41, + "truncated": false, + "block": 2, + "row": 657 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhull_r/rboxlib_r.c", + "sha256": "b3cec933f5b27094d06407ccf45f94aca8f966506c50f07c3ee426942eb2f608", + "language": "C", + "lines": 842, + "truncated": false, + "block": 2, + "row": 53 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhull_r/stat_r.c", + "sha256": "e66d8781093fe67b68277a4b0768aa749aac31e186cfe804324b104eb5bdf276", + "language": "C", + "lines": 683, + "truncated": false, + "block": 2, + "row": 60 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhull_r/stat_r.h", + "sha256": "032d63f7c7c55a37485fd3534556c2d374d12b91ed48e95223f4f8d1092a0436", + "language": "C/C++", + "lines": 533, + "truncated": false, + "block": 2, + "row": 894 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhull_r/user_r.c", + "sha256": "e213dcdd1b15178a434020f46c334a53eaaabedb0bf4a6989a3b8ad264ba2b4b", + "language": "C", + "lines": 535, + "truncated": false, + "block": 2, + "row": 49 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhull_r/user_r.h", + "sha256": "597c80f0d9bcbc51933180846699039b86f4205d852f9a8118f5a3641fb132ff", + "language": "C/C++", + "lines": 994, + "truncated": false, + "block": 2, + "row": 905 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhullcpp/Coordinates.cpp", + "sha256": "6fafdff10f8a5eebc924654d77567e514ca74d6e0c09a3adfc53f121e5570ea1", + "language": "C++", + "lines": 198, + "truncated": false, + "block": 2, + "row": 217 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhullcpp/Coordinates.h", + "sha256": "5217ef2a584dd629c3dcc9fdcdb079ff21468d51342634045656e16e4acf2804", + "language": "C/C++", + "lines": 303, + "truncated": false, + "block": 2, + "row": 899 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhullcpp/PointCoordinates.cpp", + "sha256": "c2d25562ee5e142d3dd4393d2778099c1afa3156cdc7b5c18e2eb5a0b9f0f665", + "language": "C++", + "lines": 348, + "truncated": false, + "block": 2, + "row": 337 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhullcpp/PointCoordinates.h", + "sha256": "5a6fe2135245780d49d4276390e851e862dcc21b5f121e7e23b0e8d422e08c03", + "language": "C/C++", + "lines": 161, + "truncated": false, + "block": 2, + "row": 880 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhullcpp/Qhull.cpp", + "sha256": "b181caf3d6cff3b0e643052f627ed99254c7e684e4ed0c22c9cd553b667c843b", + "language": "C++", + "lines": 352, + "truncated": false, + "block": 2, + "row": 368 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhullcpp/Qhull.h", + "sha256": "9eb1a34e113c5226c8f9200eccd53548ebe6d1e469095a90374e86771e569e52", + "language": "C/C++", + "lines": 132, + "truncated": false, + "block": 2, + "row": 872 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhullcpp/QhullError.h", + "sha256": "528f06a57024d91b8cac119459b5de5a74889cb42bffbb6eed52676897ce8b69", + "language": "C/C++", + "lines": 62, + "truncated": false, + "block": 2, + "row": 765 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhullcpp/QhullFacet.cpp", + "sha256": "e7a523f7cb2aedc31bae3b53209073ea2b6540cea6ad0401df387316916a45a5", + "language": "C++", + "lines": 519, + "truncated": false, + "block": 2, + "row": 401 + }, + { + "path": "stardist/lib/external/qhull_src/src/libqhullcpp/QhullFacet.h", + "sha256": "ff53dd57be86ed2b3b80d4134f1efa9e86127b4b164a1f8bd7453e8a5c3d16ed", + "language": "C/C++", + "lines": 151, + "truncated": false, + "block": 2, + "row": 875 + } + ] +} \ No newline at end of file diff --git a/manifests/8b/github.com__superrrpotato__relationship-learning.json b/manifests/8b/github.com__superrrpotato__relationship-learning.json new file mode 100644 index 0000000000000000000000000000000000000000..6f931b4e85307e2667a8da1306723b72a656d862 --- /dev/null +++ b/manifests/8b/github.com__superrrpotato__relationship-learning.json @@ -0,0 +1,147 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/superrrpotato/relationship-learning", + "url": "https://github.com/superrrpotato/Relationship-learning", + "host": "github.com", + "commit": "6eef732c9ea219209c78ed3f4dadd176afe7cda3", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Figure 2E(newly added during revision) and Figure S4.ipynb", + "sha256": "8bf92b2b610a5c4d87ee7f792f53ba7988abc6ca38581f6c4ede734ef64502d2", + "language": "Jupyter", + "lines": 435, + "truncated": false, + "block": 2, + "row": 1090 + }, + { + "path": "Figure S1.ipynb", + "sha256": "8ee1f412b6f7a47179298372297e1801862cb6c3054eb78f49c2efaefa8434bd", + "language": "Jupyter", + "lines": 348, + "truncated": false, + "block": 2, + "row": 1077 + }, + { + "path": "Figure S10 S11 S12.ipynb", + "sha256": "790148784af2c819656c4858fca017eca55ddd82292ded8767762b2b0254762b", + "language": "Jupyter", + "lines": 329, + "truncated": false, + "block": 2, + "row": 1075 + }, + { + "path": "Figure S5.ipynb", + "sha256": "2dacc61b78a0d6365d6cc7a775a5bc2ff32e8348435f8e537e5fd77cc71bed60", + "language": "Jupyter", + "lines": 450, + "truncated": false, + "block": 2, + "row": 1087 + }, + { + "path": "Figure S6.ipynb", + "sha256": "ce5f66751a49b283399783f4660360b5e12b4cb1fb4d790ad8fdda3eb30361dd", + "language": "Jupyter", + "lines": 470, + "truncated": false, + "block": 2, + "row": 1096 + }, + { + "path": "Figure S7.ipynb", + "sha256": "dd282a3bac1558fce3e278f2836d22f387d4bed195a7255d10eb8a0e5739f824", + "language": "Jupyter", + "lines": 877, + "truncated": false, + "block": 2, + "row": 1110 + }, + { + "path": "Figure S8.ipynb", + "sha256": "9220ad935c24dc7f28982cbea8808d282d580963763f90a25d8e05e1efc00e65", + "language": "Jupyter", + "lines": 1099, + "truncated": false, + "block": 2, + "row": 1114 + }, + { + "path": "Figure2+S2+S3.ipynb", + "sha256": "e18fb259749cf14f5f13eed2719d7853983c2156818fcc0f9e650110f8491efb", + "language": "Jupyter", + "lines": 835, + "truncated": false, + "block": 2, + "row": 1107 + }, + { + "path": "Figure3.ipynb", + "sha256": "282e1db63eb2a376c3ea1e85ae1f235af2fe38835a85a519e3049ab0f07e3316", + "language": "Jupyter", + "lines": 130, + "truncated": false, + "block": 2, + "row": 1022 + }, + { + "path": "Figure4.ipynb", + "sha256": "53c8d25020d199c41f8205926f5a7748f8df1eb8279779866736ea560e9d0c88", + "language": "Jupyter", + "lines": 107, + "truncated": false, + "block": 2, + "row": 1019 + }, + { + "path": "Figure5.ipynb", + "sha256": "38178ee09d9ecab213c6122aff2e1b0146bbc89a508e72f19ec9ea6c605135c7", + "language": "Jupyter", + "lines": 911, + "truncated": false, + "block": 2, + "row": 1111 + }, + { + "path": "Figure6.ipynb", + "sha256": "8d7d8c3bcd78b849f8cde002cefe258483b8f24fcfe3dc22b1e42051e9e71ec2", + "language": "Jupyter", + "lines": 169, + "truncated": false, + "block": 2, + "row": 1052 + }, + { + "path": "LICENSE", + "sha256": "920598ec128a27344ecabe35a000aec45e0c43e145b327385256715d44328a99", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1126 + }, + { + "path": "README.md", + "sha256": "7c4a236a8d4f50e8d9be1821f68fb9c4205d5f096206316c74d80acb2f0cd35e", + "language": "Text", + "lines": 101, + "truncated": false, + "block": 2, + "row": 2615 + }, + { + "path": "rank_item.py", + "sha256": "4d1431c8cef761a53940e2cef61c5a80205481ed7c18f154bea27091f7807621", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 2, + "row": 1840 + } + ] +} \ No newline at end of file diff --git a/manifests/8c/github.com__m1nhengchen__gyral-folding-network.json b/manifests/8c/github.com__m1nhengchen__gyral-folding-network.json new file mode 100644 index 0000000000000000000000000000000000000000..fabd58a7afb5692a4849b421bfe2ad108ce1db81 --- /dev/null +++ b/manifests/8c/github.com__m1nhengchen__gyral-folding-network.json @@ -0,0 +1,66 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/m1nhengchen/gyral-folding-network", + "url": "https://github.com/m1nhengChen/Gyral-Folding-Network", + "host": "github.com", + "commit": "dabd756dfc4af96b135ab8a16984595353277a37", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "8eb4ea23a12a21c085003f6e1ff573d264e28093618ec3d2212932f1dab82299", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1131 + }, + { + "path": "README.md", + "sha256": "10b9ebb0548add1d5ec445ee67745df73bcc545df754454cf2aa07c59b53fb31", + "language": "Text", + "lines": 33, + "truncated": false, + "block": 2, + "row": 2619 + }, + { + "path": "src/classification_nestedcv_residN.py", + "sha256": "01ac9cabfe50db67f26196ba6212d9eedfee0d5f6b28d94642b6a4b97cf49299", + "language": "Python", + "lines": 639, + "truncated": false, + "block": 2, + "row": 2180 + }, + { + "path": "src/compare_node_number_effect_full.py", + "sha256": "e0030b4de6c0f3defefddef9e0014b677c0fd9d355d3ad506ef259131e0b6ff9", + "language": "Python", + "lines": 842, + "truncated": false, + "block": 2, + "row": 2191 + }, + { + "path": "src/landmark_mind_from_vtk_mdkde_adaptive.py", + "sha256": "0f65f3d6e2c2a900bfea600c2c1390b7eea599ca851364c848e277cb57f65d46", + "language": "Python", + "lines": 1030, + "truncated": false, + "block": 2, + "row": 2218 + }, + { + "path": "src/reg_N_scaling.py", + "sha256": "33b532e016e3728b15faa4786f42ac1ba5f95a50e89d696d6acc5ca9b23419eb", + "language": "Python", + "lines": 259, + "truncated": false, + "block": 2, + "row": 2016 + } + ] +} \ No newline at end of file diff --git a/manifests/8d/github.com__allenneuraldynamics__aind-ephys-preprocessing.json b/manifests/8d/github.com__allenneuraldynamics__aind-ephys-preprocessing.json new file mode 100644 index 0000000000000000000000000000000000000000..96c3559dbf7748477222b971c3fdda3fac3f2499 --- /dev/null +++ b/manifests/8d/github.com__allenneuraldynamics__aind-ephys-preprocessing.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/allenneuraldynamics/aind-ephys-preprocessing", + "url": "https://github.com/AllenNeuralDynamics/aind-ephys-preprocessing", + "host": "github.com", + "commit": "1ac06e8233dae52fe9b0a306bb09da3fda6e057d", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "d7609c858f47823b9d7cee46253bffc40e93fd55effa744aa249e97a603c65cb", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1139 + }, + { + "path": "README.md", + "sha256": "8bc64c499f8fe0b06a96745304e37818e3cdd20f27d8032b2c37201a3beb1aae", + "language": "Text", + "lines": 117, + "truncated": false, + "block": 2, + "row": 2638 + }, + { + "path": "code/run_capsule.py", + "sha256": "9ac5fae35115400252e7103b28ac7d9c3d5c1ea3bf457d3473cf353dd45e489a", + "language": "Python", + "lines": 693, + "truncated": false, + "block": 2, + "row": 2221 + } + ] +} \ No newline at end of file diff --git a/manifests/8e/github.com__alserglab__fgsea.json b/manifests/8e/github.com__alserglab__fgsea.json new file mode 100644 index 0000000000000000000000000000000000000000..3d21cb67b3f0f8e191eb14d014833f233e79d9b3 --- /dev/null +++ b/manifests/8e/github.com__alserglab__fgsea.json @@ -0,0 +1,489 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/alserglab/fgsea", + "url": "https://github.com/alserglab/fgsea", + "host": "github.com", + "commit": "570f5903545835cb340e699fcdfdf444b1ba07ec", + "license": "MIT", + "license_confirmed_by": "license file LICENCE", + "redistribution": "yes", + "files": [ + { + "path": "LICENCE", + "sha256": "49aa8c7e841b32a4f0df55d2c40d8cf245797aea656064fde51bf115ad73a97e", + "language": "License", + "lines": 20, + "truncated": false, + "block": 1, + "row": 2165 + }, + { + "path": "R/RcppExports.R", + "sha256": "f68917f325edaf1f9a6593d4ef9416fa79b0a91444d3b9a0a395e74d5438d7be", + "language": "R", + "lines": 59, + "truncated": false, + "block": 1, + "row": 10176 + }, + { + "path": "R/fgsea-package.R", + "sha256": "6f4b7cb5ed762f969db72ed9dcefd74ad7b700b1e5102b5ba85f6494f852719f", + "language": "R", + "lines": 38, + "truncated": false, + "block": 1, + "row": 10023 + }, + { + "path": "R/fgsea.R", + "sha256": "8c1e38596ab80e6a79f34f92f0fb336251a2b625c2f11ad0b9cea433eb0508be", + "language": "R", + "lines": 743, + "truncated": false, + "block": 1, + "row": 10583 + }, + { + "path": "R/fgseaMultilevel.R", + "sha256": "f1423355e1042bc00c3fd76be513be97ac0990a5da650c19568648fb64775ab0", + "language": "R", + "lines": 295, + "truncated": false, + "block": 1, + "row": 10482 + }, + { + "path": "R/fgseaORA.R", + "sha256": "7627df24167d11dea8935f9fe5f81118e2fb657eb8d61d46ca83f5954e39976c", + "language": "R", + "lines": 146, + "truncated": false, + "block": 1, + "row": 10308 + }, + { + "path": "R/geseca-multilevel.R", + "sha256": "1befc592e62fa54509c3fa959e48ff1bb6558c7f5bdce576806c296404013841", + "language": "R", + "lines": 381, + "truncated": false, + "block": 1, + "row": 10507 + }, + { + "path": "R/geseca-plot.R", + "sha256": "44388c0ec760359e75c040602e53ef011472f9795c8af48a20db8de22b8bcf6f", + "language": "R", + "lines": 555, + "truncated": false, + "block": 1, + "row": 10572 + }, + { + "path": "R/geseca-simple.R", + "sha256": "c46658fea7b386428695a8f27e3c3952b9d08f7bd98091434e482f180766f400", + "language": "R", + "lines": 151, + "truncated": false, + "block": 1, + "row": 10296 + }, + { + "path": "R/geseca-utils.R", + "sha256": "f65815f9c1fb6189839c43f7e73dc7607cc1ac469d939d46993a07e00ac24e96", + "language": "R", + "lines": 70, + "truncated": false, + "block": 1, + "row": 10085 + }, + { + "path": "R/pathways.R", + "sha256": "e9659fae0f5df481ca45369b3391960b7a8293b0a561f78a0f89e95dea2c9edd", + "language": "R", + "lines": 97, + "truncated": false, + "block": 1, + "row": 10199 + }, + { + "path": "R/plot.R", + "sha256": "71bc098b542ca3fe1ec0a382541422846a5adc9c09918fa19a7408e3c1320caa", + "language": "R", + "lines": 286, + "truncated": false, + "block": 1, + "row": 10443 + }, + { + "path": "R/util.R", + "sha256": "44cec4675022dd18b1dc2baf9c8bfd659d52b00c4d535ff44e210c6c4876ccee", + "language": "R", + "lines": 45, + "truncated": false, + "block": 1, + "row": 10024 + }, + { + "path": "README.md", + "sha256": "55b24d635221e817bff60c64fcd638a237038cc4268aa326dfb7608d29e08b99", + "language": "Text", + "lines": 103, + "truncated": false, + "block": 1, + "row": 11896 + }, + { + "path": "data-raw/exampleExpressionMatrix.R", + "sha256": "7ea4fe9c9cbe2db012e760f45768d0167971f899e3f121464ff001da7af03b09", + "language": "R", + "lines": 5, + "truncated": false, + "block": 1, + "row": 9912 + }, + { + "path": "data-raw/examplePathways.R", + "sha256": "5ab8fed40e3f12962a339087f80d8a4208e4bd80372bb72b0a3388b880a0e2d7", + "language": "R", + "lines": 6, + "truncated": false, + "block": 1, + "row": 9909 + }, + { + "path": "data-raw/exampleRanks.R", + "sha256": "80a8c7a00525c06740e3389eb9315c6c9a7b7f7a11ec84ee1e0727a3c8231982", + "language": "R", + "lines": 6, + "truncated": false, + "block": 1, + "row": 9910 + }, + { + "path": "inst/exact/exact.cpp", + "sha256": "cf318df96fb403ee4ee20d45758987f6674a8a76879eebff315f732d66e02ac5", + "language": "C++", + "lines": 139, + "truncated": false, + "block": 1, + "row": 243 + }, + { + "path": "inst/exact/runFgsea.R", + "sha256": "2e62f0aaf528f54d24b29fd4c4a2594ebee2051f4c2d8876f544257dfea13a7e", + "language": "R", + "lines": 52, + "truncated": false, + "block": 1, + "row": 10040 + }, + { + "path": "inst/gen_gene_ranks.R", + "sha256": "416c101f72cc7ff7c60bd78b1eba3a019be9236a3f5d4108f02be43101b40c97", + "language": "R", + "lines": 29, + "truncated": false, + "block": 1, + "row": 9991 + }, + { + "path": "inst/gen_gse14308_expression_matrix.R", + "sha256": "4887ddba9514f57ff12106895e35e1875597ff5c980173f188117e3a42d331e5", + "language": "R", + "lines": 21, + "truncated": false, + "block": 1, + "row": 9972 + }, + { + "path": "inst/gene_reactome_pathways.R", + "sha256": "80ffc1f505e3b94941283e8ac1a3f06937103fb32c3007150375d502319ca1a5", + "language": "R", + "lines": 25, + "truncated": false, + "block": 1, + "row": 9994 + }, + { + "path": "inst/gse19429_gsea.R", + "sha256": "65c6b1b64cb0f73140b6081b13c78a92a67b87eadfce72865e5b41b730dbe22e", + "language": "R", + "lines": 17, + "truncated": false, + "block": 1, + "row": 9939 + }, + { + "path": "inst/run_broad_gsea.R", + "sha256": "ce8d1998af9c39d08d1e9d338453d038dcbc90fd64c7a685777b3385f8873367", + "language": "R", + "lines": 30, + "truncated": false, + "block": 1, + "row": 9995 + }, + { + "path": "inst/th1_gsea.R", + "sha256": "50cabead42ea2c5bfbbdd29e8c32511b026c025d3df98ec57e4ea8a84785c11e", + "language": "R", + "lines": 201, + "truncated": false, + "block": 1, + "row": 10307 + }, + { + "path": "src/RcppExports.cpp", + "sha256": "047fa52e36d2ae64b0bb2023a03090f70035340956f6ce6e6b1394e7f3345c95", + "language": "C++", + "lines": 105, + "truncated": false, + "block": 1, + "row": 253 + }, + { + "path": "src/ScoreCalculation.cpp", + "sha256": "df752dad6df54961c935c78539f94c3c4e65582a25450a45b0c2ae3866b3061b", + "language": "C++", + "lines": 43, + "truncated": false, + "block": 1, + "row": 214 + }, + { + "path": "src/ScoreCalculation.h", + "sha256": "0b45234a2f7f67fe00c5cc79c7e0a7c125ba39e0b132033430a456259b07c848", + "language": "C/C++", + "lines": 22, + "truncated": false, + "block": 1, + "row": 302 + }, + { + "path": "src/ScoreRuler.cpp", + "sha256": "47658559a751a682da8223441dcefa6a9c634b27c9ac9793eca278bcccd1cbf9", + "language": "C++", + "lines": 172, + "truncated": false, + "block": 1, + "row": 249 + }, + { + "path": "src/ScoreRuler.h", + "sha256": "8ca6d1f89d5ed6bc02ad1e98e5d8e1436a6cc37df46807d47ee910e9aad3bcef", + "language": "C/C++", + "lines": 43, + "truncated": false, + "block": 1, + "row": 323 + }, + { + "path": "src/esCalculation.cpp", + "sha256": "2065d410634fea3e061816f2a4296c23312007d334a476969d693c97a8143d2f", + "language": "C++", + "lines": 75, + "truncated": false, + "block": 1, + "row": 222 + }, + { + "path": "src/esCalculation.h", + "sha256": "721c891842b8681c95790a20a0964259ba3f49574f2aab91442519b66e32ac8b", + "language": "C/C++", + "lines": 98, + "truncated": false, + "block": 1, + "row": 359 + }, + { + "path": "src/fastGSEA.cpp", + "sha256": "88a6f84af7fb5827e443254f01e1662bc18c99c562c84b6307c13d96bdddafc6", + "language": "C++", + "lines": 502, + "truncated": false, + "block": 1, + "row": 270 + }, + { + "path": "src/fastGSEA.h", + "sha256": "398628b432a3ac7db0d890f902b9f9ede20245d7d99ab4b381f222e3b3d777c3", + "language": "C/C++", + "lines": 55, + "truncated": false, + "block": 1, + "row": 355 + }, + { + "path": "src/fgseaMultilevel.cpp", + "sha256": "9d9b70f6d8e45598613c15352d8a5d041f40eea81da9681fc744fbaea7de6ef3", + "language": "C++", + "lines": 55, + "truncated": false, + "block": 1, + "row": 223 + }, + { + "path": "src/fgseaMultilevel.h", + "sha256": "fd2606dc2f74d57efa5b6bdb425d9e0b7c73a9992ff96a680fe7499169ef6b5a", + "language": "C/C++", + "lines": 25, + "truncated": false, + "block": 1, + "row": 322 + }, + { + "path": "src/fgseaMultilevelSupplement.cpp", + "sha256": "59ff306c4fc51bba4371d2f1b387b070415b61da263c1bdafc414d762f08b706", + "language": "C++", + "lines": 494, + "truncated": false, + "block": 1, + "row": 279 + }, + { + "path": "src/fgseaMultilevelSupplement.h", + "sha256": "0ee12ca0456a42e0b12b53f2a04454b48e81e1a91fb32efbcbceb885219817c4", + "language": "C/C++", + "lines": 104, + "truncated": false, + "block": 1, + "row": 378 + }, + { + "path": "src/geseca.cpp", + "sha256": "a52c5bc9262f44f939f41dc3c905dde29a647da1ab3208969c274a54d767d6de", + "language": "C++", + "lines": 29, + "truncated": false, + "block": 1, + "row": 211 + }, + { + "path": "src/geseca.h", + "sha256": "3f82ac4c56824474522da293a0944568d6e605cc83ccbf08736d305fe74fb606", + "language": "C/C++", + "lines": 13, + "truncated": false, + "block": 1, + "row": 290 + }, + { + "path": "src/util.cpp", + "sha256": "46d3a423ed2bd1ac8258081893e94e87d73554c3fdbafbc0fc1cf6c1c8500737", + "language": "C++", + "lines": 82, + "truncated": false, + "block": 1, + "row": 224 + }, + { + "path": "src/util.h", + "sha256": "2e99d5824b6e790256c9fea3b5f91086d28e70a0b3a77ec4ca80fe734070cad7", + "language": "C/C++", + "lines": 31, + "truncated": false, + "block": 1, + "row": 309 + }, + { + "path": "test.R", + "sha256": "9755587e5dac90de43f7e2f7c056bbe4c21bb2e1f8e21e94466ad41981ab3272", + "language": "R", + "lines": 5, + "truncated": false, + "block": 1, + "row": 9895 + }, + { + "path": "tests/testthat.R", + "sha256": "3cf3d6f1ed36d8b233ee0fc59d9752cc2a95494077f7cdf4fbba3b3b70acd2bb", + "language": "R", + "lines": 9, + "truncated": false, + "block": 1, + "row": 9903 + }, + { + "path": "tests/testthat/test_fora.R", + "sha256": "450d277f5f1b50ee3e0e5c2a1074decf39b7126198db6dd3646d49d2caf3bccd", + "language": "R", + "lines": 52, + "truncated": false, + "block": 1, + "row": 10029 + }, + { + "path": "tests/testthat/test_geseca.R", + "sha256": "3e653f12eb908092fbdddab4b9614f7dcdacdfae9a04bd9b00dfe282f93b69bb", + "language": "R", + "lines": 103, + "truncated": false, + "block": 1, + "row": 10148 + }, + { + "path": "tests/testthat/test_gsea_analysis.R", + "sha256": "8c9ceee0fe655c97f6a49346e76443dffae428228c8328f18ae34da6513eec2e", + "language": "R", + "lines": 289, + "truncated": false, + "block": 1, + "row": 10429 + }, + { + "path": "tests/testthat/test_gsea_multilevel.R", + "sha256": "aeaf2ad12f6d9ede56dd01683a1ef718825f19be2e199ff1de10d4fa87d6f720", + "language": "R", + "lines": 261, + "truncated": false, + "block": 1, + "row": 10398 + }, + { + "path": "tests/testthat/test_gsea_stat.R", + "sha256": "11455b0c5b515629ea23c4d07426e732b9fb1c41f345148f726836e266095fe3", + "language": "R", + "lines": 202, + "truncated": false, + "block": 1, + "row": 10354 + }, + { + "path": "tests/testthat/test_pathways.R", + "sha256": "70a31747e26bc4f07d42c9ada08415f954ada3e926496d2c0707beffb7a2453a", + "language": "R", + "lines": 18, + "truncated": false, + "block": 1, + "row": 9928 + }, + { + "path": "tests/testthat/test_plot.R", + "sha256": "849e75b9156084bcd5a9a58e853a9611f6c0c3c0e8345915de6768fa2e93e772", + "language": "R", + "lines": 54, + "truncated": false, + "block": 1, + "row": 10076 + }, + { + "path": "vignettes/fgsea-tutorial.Rmd", + "sha256": "d30cb87392e3c8ed761b98caf0454343a9a26e3dc9072557355de3a7857a677c", + "language": "R", + "lines": 183, + "truncated": false, + "block": 1, + "row": 10301 + }, + { + "path": "vignettes/geseca-tutorial.Rmd", + "sha256": "8efbfd115d4cc6509e86ac719d8e4b64aae03ec38faa9673ab402100cfccbaf9", + "language": "R", + "lines": 536, + "truncated": false, + "block": 1, + "row": 10539 + } + ] +} \ No newline at end of file diff --git a/manifests/8f/github.com__camillegontier__neuron_microgravity.json b/manifests/8f/github.com__camillegontier__neuron_microgravity.json new file mode 100644 index 0000000000000000000000000000000000000000..a770ff5bbc86d4dc966fdf850c2d6689bb485641 --- /dev/null +++ b/manifests/8f/github.com__camillegontier__neuron_microgravity.json @@ -0,0 +1,129 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/camillegontier/neuron_microgravity", + "url": "https://github.com/camillegontier/neuron_microgravity", + "host": "github.com", + "commit": "76f907083a06972d631a9a295271a08ef5099334", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Fig1A.py", + "sha256": "c9762ecacf2962ad094a4c4c23594b3a526de729bdb94660961ec593d07fa7db", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 2, + "row": 1820 + }, + { + "path": "Fig1B.py", + "sha256": "eb0fbc23f555a280d145a7f40e85e3b24d92a49445b12e3808baa283808bf7ba", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 2, + "row": 1836 + }, + { + "path": "Fig1C.py", + "sha256": "71fe94d8097d79476f8f686f5224246ba0d22b86bd5a227957f3d2868943d68a", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 2, + "row": 1844 + }, + { + "path": "Fig1D.py", + "sha256": "43174c976dc45a85258b77e07b179404962cf3c07a2df925c1775033613b9812", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 2, + "row": 1926 + }, + { + "path": "Fig2B.py", + "sha256": "379899ce239ceac54c0c19f3b67fec74d2933bdf8a7accca697fcc91c1177f1c", + "language": "Python", + "lines": 104, + "truncated": false, + "block": 2, + "row": 1798 + }, + { + "path": "Fig3A.py", + "sha256": "fc599ab04316116c1dca72dcc94afd9933ff4db0e693ba239543dd62cb094a5d", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 2, + "row": 1778 + }, + { + "path": "Fig3B.py", + "sha256": "b889e9f14d3a736d34fb0cd219a1944882494e6802aba14275c7098c5019b844", + "language": "Python", + "lines": 127, + "truncated": false, + "block": 2, + "row": 1866 + }, + { + "path": "Fig5.py", + "sha256": "16015482b7a978555d5c538a6aa6e2fbdf3ff254f6cdf8e7d87df5ce8fbacfbc", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 2, + "row": 1805 + }, + { + "path": "Fig6.py", + "sha256": "fa60210e196ab02c57922a940b0f793ab2be86b8ce2e9e1cd2314fc84585934d", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 2, + "row": 1871 + }, + { + "path": "LICENSE", + "sha256": "ce42647015ecd8b12eee27883d0d3d2f28f760427c7767f6757d9cc89e72da45", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1132 + }, + { + "path": "README.md", + "sha256": "c86c80f7025b6a4b8459b22778bdfa367f97384c2377ba68ae1be8b61598384c", + "language": "Text", + "lines": 15, + "truncated": false, + "block": 2, + "row": 2592 + }, + { + "path": "spike_sorting.py", + "sha256": "1e7c4af50c847ea0f7c9dcd770ca5a57ae4c05d6cece4a0d42e0700f56c8ad65", + "language": "Python", + "lines": 161, + "truncated": false, + "block": 2, + "row": 1979 + }, + { + "path": "weight_network.py", + "sha256": "27bb34ca7caf67358b5804a4a494135b4aa2c3b55a2fc7d431b98e275fb42383", + "language": "Python", + "lines": 152, + "truncated": false, + "block": 2, + "row": 1913 + } + ] +} \ No newline at end of file diff --git a/manifests/90/github.com__cbjyb__fwimsnet-forest-fire-risk-prediction-framework.json b/manifests/90/github.com__cbjyb__fwimsnet-forest-fire-risk-prediction-framework.json new file mode 100644 index 0000000000000000000000000000000000000000..d9a53cef319c52d28383ea3390a7ba162081fe6f --- /dev/null +++ b/manifests/90/github.com__cbjyb__fwimsnet-forest-fire-risk-prediction-framework.json @@ -0,0 +1,102 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/cbjyb/fwimsnet-forest-fire-risk-prediction-framework", + "url": "https://github.com/CBJYB/FWIMSNet-Forest-Fire-Risk-Prediction-Framework", + "host": "github.com", + "commit": "f0b82557d50dc10bd228e437deb3c8c0e9e1011c", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "32bdc2c38b75c0c1532878fa5fc4a5dae5f405ed8e44f70c82e3d63cb5fd96b0", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2077 + }, + { + "path": "README.md", + "sha256": "b150d723c4059103675820900907567d411691e9d87642bc14b9e9bf042d5335", + "language": "Text", + "lines": 44, + "truncated": false, + "block": 1, + "row": 11859 + }, + { + "path": "setup.py", + "sha256": "fc0a720a8013ae6a1baa8da041fd2e967a2ffe1c67c7787ac60fd392ea31b87d", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 1, + "row": 5717 + }, + { + "path": "src/__init__.py", + "sha256": "843df3ab01c92df6302e0717d7554ea467c6712481b68b4d19ab42262ecf2354", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 1, + "row": 5502 + }, + { + "path": "src/main.py", + "sha256": "6313f7ef0e26c78625029496a688217edb7ef073f08d2766804762f54e490c3a", + "language": "Python", + "lines": 119, + "truncated": false, + "block": 1, + "row": 6915 + }, + { + "path": "src/models.py", + "sha256": "5a781175fbf99c2517ad3e181acb8e846ad69554745baefaa713198cef444274", + "language": "Python", + "lines": 419, + "truncated": false, + "block": 1, + "row": 8953 + }, + { + "path": "src/predict.py", + "sha256": "541d243c1535cc4c23f5a265e84f026fff8efccd580562024d13ec00c4102cc3", + "language": "Python", + "lines": 189, + "truncated": false, + "block": 1, + "row": 7695 + }, + { + "path": "src/preprocess_data.py", + "sha256": "6878a6511a6d3d30d4200934b4c2e96f7b88e23891e9c61d5c489cb4e6eb17a8", + "language": "Python", + "lines": 349, + "truncated": false, + "block": 1, + "row": 8843 + }, + { + "path": "src/train.py", + "sha256": "4122f6816253a357d22e9253d2839cf16e039953a83cb7153fa87c6506b24f8b", + "language": "Python", + "lines": 228, + "truncated": false, + "block": 1, + "row": 8042 + }, + { + "path": "src/utils.py", + "sha256": "5136bd97547635b0b644a08c13fc86eacce13c877737877e04b23f73f41a45d2", + "language": "Python", + "lines": 113, + "truncated": false, + "block": 1, + "row": 6557 + } + ] +} \ No newline at end of file diff --git a/manifests/90/github.com__diedrichsenlab__suitpy.json b/manifests/90/github.com__diedrichsenlab__suitpy.json new file mode 100644 index 0000000000000000000000000000000000000000..291e0b7868d0f9714c71de01cca74cf7f24c1bae --- /dev/null +++ b/manifests/90/github.com__diedrichsenlab__suitpy.json @@ -0,0 +1,246 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/diedrichsenlab/suitpy", + "url": "https://github.com/DiedrichsenLab/SUITPy", + "host": "github.com", + "commit": "3d20055022e5339687f412da92979520c7568da2", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "7fbfc801e3c369d69b89a7512038606ae138b8ac406611b291e96dbe92493b2c", + "language": "License", + "lines": 9, + "truncated": false, + "block": 2, + "row": 1144 + }, + { + "path": "README.rst", + "sha256": "aca1a255eaffc3e0d6f6216873867151d8abf500ddf998b10350f4ec31a2568f", + "language": "Text", + "lines": 57, + "truncated": false, + "block": 2, + "row": 2617 + }, + { + "path": "SUITPy/__init__.py", + "sha256": "24097011da77051006da8809069215575e71492764bfbc7e631cf00c164b4ab7", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 2, + "row": 1679 + }, + { + "path": "SUITPy/atlas.py", + "sha256": "5d85bb48b0b71c4a98a20e3cd38570971db8f26433730c23555b6a8e2570b597", + "language": "Python", + "lines": 405, + "truncated": false, + "block": 2, + "row": 2135 + }, + { + "path": "SUITPy/flatmap.py", + "sha256": "13edd28bb034bd57e5b2dddd7ba40c271f06105351beadd68de94cbb88566844", + "language": "Python", + "lines": 896, + "truncated": false, + "block": 2, + "row": 2207 + }, + { + "path": "SUITPy/isolation.py", + "sha256": "affa752342e8b6f6c3148f3264096788c9f39fe8d260dc326d3b5caabea244a8", + "language": "Python", + "lines": 1469, + "truncated": false, + "block": 2, + "row": 2238 + }, + { + "path": "SUITPy/normalization.py", + "sha256": "3f87dbb5ecf25f34fd2a7d845a3765431f97559d1c2c1712343ea9fd844230cd", + "language": "Python", + "lines": 295, + "truncated": false, + "block": 2, + "row": 2107 + }, + { + "path": "SUITPy/reslice.py", + "sha256": "693e5c2bed85cdec87cf608d850fb27eb09c314ac35c9232f81cc28ad7bd8d3e", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 2, + "row": 1917 + }, + { + "path": "SUITPy/utils.py", + "sha256": "50ed6cdbd73ebc150675ccf768d068b28d9cffae1d0ab797c1901f0a050845c7", + "language": "Python", + "lines": 820, + "truncated": false, + "block": 2, + "row": 2193 + }, + { + "path": "docs/source/conf.py", + "sha256": "e56c9b2e3401cdef7de512a95bd5ed6d7f059eef868d69945ff0e3c6235d633d", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 2, + "row": 1782 + }, + { + "path": "docs/source/tutorials/1.quickstart_fMRI.ipynb", + "sha256": "22d5b2da5c0d95a73b6b187d965697d223a1e0414ba2b8dbee18fe5548bb8cd9", + "language": "Jupyter", + "lines": 164, + "truncated": false, + "block": 2, + "row": 1056 + }, + { + "path": "docs/source/tutorials/2.quickstart_anatomical.ipynb", + "sha256": "16c1f55bc893799dd754bb0eabafa642fa61a12f6540f893eed6c8b22f977dc9", + "language": "Jupyter", + "lines": 188, + "truncated": false, + "block": 2, + "row": 1060 + }, + { + "path": "docs/source/tutorials/3.isolate_example.ipynb", + "sha256": "9f0e4da0b78a200a1a96e946186011373d1eea96c1fa86f33d992e6b00e6c1ed", + "language": "Jupyter", + "lines": 68, + "truncated": false, + "block": 2, + "row": 1020 + }, + { + "path": "docs/source/tutorials/4.normalize_example.ipynb", + "sha256": "81dbbd2b200d51326bb3513a653797ff91dd936a09063702ea4d9a6ee84fff40", + "language": "Jupyter", + "lines": 155, + "truncated": false, + "block": 2, + "row": 1055 + }, + { + "path": "docs/source/tutorials/5.reslice_example.ipynb", + "sha256": "bc595cace28972799eb102df2e7a0bec4ada5b55583767e9aea97624759bb62d", + "language": "Jupyter", + "lines": 114, + "truncated": false, + "block": 2, + "row": 1034 + }, + { + "path": "docs/source/tutorials/6.flatmap_example.ipynb", + "sha256": "0a36d8c18a0244f177ace6cebb9b236e87b05ea44ab38330d93ec5d0da1e83c7", + "language": "Jupyter", + "lines": 189, + "truncated": false, + "block": 2, + "row": 1063 + }, + { + "path": "setup.py", + "sha256": "f7f1fef2375448146fe2ad96f8a43d1b84e24d74b7dbaae791341b234eb86228", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 2, + "row": 1826 + }, + { + "path": "tests/resample_example_dataset.py", + "sha256": "00fecb54ae23aec19caf932c03d8ce9b55a9491b6fd935656e85b20a23c2e510", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 2, + "row": 1623 + }, + { + "path": "tests/test_atlas.py", + "sha256": "09a7906667eff2946ea331d008c307afa86d4a5a6c1ecf3eb23d84bb6c2255e5", + "language": "Python", + "lines": 26, + "truncated": false, + "block": 2, + "row": 1669 + }, + { + "path": "tests/test_estimate_volume_individ.ipynb", + "sha256": "3fe3e3113e697aeae451051e9ac5d96de4aedb5520042f35935ed9aade0d9574", + "language": "Jupyter", + "lines": 193, + "truncated": false, + "block": 2, + "row": 1058 + }, + { + "path": "tests/test_flatmap.py", + "sha256": "bd0c9dca9d211b850f0062360dc96a895649ae54dbaf4f8e405c7b30fde282e4", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 2, + "row": 1800 + }, + { + "path": "tests/test_isolate.py", + "sha256": "51a8bbdc38d69a719f526abc31c7d09f3b5dda56045601784f33dc68be097d85", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 2, + "row": 1636 + }, + { + "path": "tests/test_normalize.py", + "sha256": "b68f1545c13d9bec347c5c3c37f1e582b64f573c26ac86bfa66adb8d0bb39f6e", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 2, + "row": 1692 + }, + { + "path": "tests/test_reslice.ipynb", + "sha256": "7ae5c7fd70aebcebf8dc84dc5a151e1c89485dae6b31e42d2ec86e6569fe70c3", + "language": "Jupyter", + "lines": 73, + "truncated": false, + "block": 2, + "row": 1011 + }, + { + "path": "tests/test_reslice.py", + "sha256": "36dc572a99e0c74a695cac6da626ebb9f581681e0718881136b226923e187fab", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 2, + "row": 1770 + }, + { + "path": "tests/test_roi_summarization.py", + "sha256": "ec5154b4c6451bcf13ed202ed033e671f5e9ff32cf81f398d55aa403185e6dfa", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 2, + "row": 1664 + } + ] +} \ No newline at end of file diff --git a/manifests/90/github.com__durdagilab__neuralplexer_ligand_scoring.json b/manifests/90/github.com__durdagilab__neuralplexer_ligand_scoring.json new file mode 100644 index 0000000000000000000000000000000000000000..4b5c9d9f030b39971e940a0fe3ea7ee1af234970 --- /dev/null +++ b/manifests/90/github.com__durdagilab__neuralplexer_ligand_scoring.json @@ -0,0 +1,48 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/durdagilab/neuralplexer_ligand_scoring", + "url": "https://github.com/DurdagiLab/Neuralplexer_Ligand_Scoring", + "host": "github.com", + "commit": "7057748744fc580fa1fc1052a26bff7649769409", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "15d2f5e4a035acf254b757cbe916c74d7a19c6eaac95f939b2bc467fa62dcac4", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2108 + }, + { + "path": "Neuralplexer_get_RANK1_protein.py", + "sha256": "f4edb5a87350f8282dafba04565102069703e0280ba5483f5c756f5bd56291c3", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 1, + "row": 6839 + }, + { + "path": "README.md", + "sha256": "954585e8795847b193cb2e660a16e74780e17e566046a4d3076d75198ca149e2", + "language": "Text", + "lines": 27, + "truncated": false, + "block": 1, + "row": 11808 + }, + { + "path": "neuralplexer_rank1_score_inplace.py", + "sha256": "74e2e2f23cd7844bab47b60117e64977153ac2b3db3bcda6dc8ccd9172d7a3cd", + "language": "Python", + "lines": 52, + "truncated": false, + "block": 1, + "row": 6425 + } + ] +} \ No newline at end of file diff --git a/manifests/90/github.com__phys2__belki.json b/manifests/90/github.com__phys2__belki.json new file mode 100644 index 0000000000000000000000000000000000000000..ab9785b3988b25ca4fa25fe038a060aba80d2c17 --- /dev/null +++ b/manifests/90/github.com__phys2__belki.json @@ -0,0 +1,894 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/phys2/belki", + "url": "https://github.com/phys2/belki", + "host": "github.com", + "commit": "0fa27367a490fdbd67dd987257f9165d7f4347d4", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "1d74ce7cb746bcd1a00af1b7fac3c057da4c65fc9be348a502784facae412f08", + "language": "Text", + "lines": 7, + "truncated": false, + "block": 1, + "row": 11776 + }, + { + "path": "src/compute/annotations.cpp", + "sha256": "d76b0246f1672e1dc7cd594c5527da54f0936f9272b0979dbc6f1efbeb5959ca", + "language": "C++", + "lines": 124, + "truncated": false, + "block": 1, + "row": 227 + }, + { + "path": "src/compute/annotations.h", + "sha256": "a3555fd820ac77187840d9f67530be1b703dc45c654c2d1468967ca052ab0803", + "language": "C/C++", + "lines": 41, + "truncated": false, + "block": 1, + "row": 303 + }, + { + "path": "src/compute/colors.cpp", + "sha256": "561bbb50cde12f436d1ce7d19e55e7dee7016e27a18572881664652847d94ec4", + "language": "C++", + "lines": 1109, + "truncated": false, + "block": 1, + "row": 280 + }, + { + "path": "src/compute/colors.h", + "sha256": "baca76d3b9c2f938aa66b0b372a1e86fcd58d426e5b8a14df2c862496d9a6092", + "language": "C/C++", + "lines": 47, + "truncated": false, + "block": 1, + "row": 331 + }, + { + "path": "src/compute/components.cpp", + "sha256": "b47345fc86c238b4cacd577fc00baffd97a11777633a911570bc4659f41e54bc", + "language": "C++", + "lines": 127, + "truncated": false, + "block": 1, + "row": 231 + }, + { + "path": "src/compute/components.h", + "sha256": "5f82834f41eb8987afb4420e7e8322317c3955009e5a3111298e1d724b0ae28b", + "language": "C/C++", + "lines": 71, + "truncated": false, + "block": 1, + "row": 346 + }, + { + "path": "src/compute/dimred.cpp", + "sha256": "3a15b02fabd9bb6eef79278f4b2e83fd8f608309f2eee692ac0d01ec62bbcebc", + "language": "C++", + "lines": 177, + "truncated": false, + "block": 1, + "row": 252 + }, + { + "path": "src/compute/dimred.h", + "sha256": "c1946d6e281372f1515a1fc154cd454cb2fbb65f684b1cbbd534d4096807608b", + "language": "C/C++", + "lines": 22, + "truncated": false, + "block": 1, + "row": 295 + }, + { + "path": "src/compute/distmat.cpp", + "sha256": "4fefebf030a756832d36f547f70e25abed6ccd0aa339cca0ee9414b7a4cb8362", + "language": "C++", + "lines": 64, + "truncated": false, + "block": 1, + "row": 219 + }, + { + "path": "src/compute/distmat.h", + "sha256": "4e08090e23aaf902ea39a6dbb3ef8bff0f0c5a29deda90cad53fd91c0ea084c2", + "language": "C/C++", + "lines": 20, + "truncated": false, + "block": 1, + "row": 299 + }, + { + "path": "src/compute/features.cpp", + "sha256": "9f387fb8551d510155450b3a4804e6192625dbec2069908fec436a91607d6a21", + "language": "C++", + "lines": 274, + "truncated": false, + "block": 1, + "row": 261 + }, + { + "path": "src/compute/features.h", + "sha256": "016aebdd43088e73ce725348c06893d7bc4eb81c5d96592ab093bd6a154b77f6", + "language": "C/C++", + "lines": 38, + "truncated": false, + "block": 1, + "row": 336 + }, + { + "path": "src/compute/hierarchy.cpp", + "sha256": "94faac1ce9db89931904791bb2934ec8bb71584e7b4fe8f976ec67bf6b4229d4", + "language": "C++", + "lines": 162, + "truncated": false, + "block": 1, + "row": 241 + }, + { + "path": "src/compute/hierarchy.h", + "sha256": "c2875c3b09d1f2feaae39fd4ea0e3bc2ecc02028c498c2cf5ba99ee548c8aa56", + "language": "C/C++", + "lines": 15, + "truncated": false, + "block": 1, + "row": 291 + }, + { + "path": "src/compute/meanshift/fams.cpp", + "sha256": "551b7c99803e1d1815f27250d26b179db6dc83a630513bd2521c28b25b52f806", + "language": "C++", + "lines": 365, + "truncated": false, + "block": 1, + "row": 264 + }, + { + "path": "src/compute/meanshift/fams.h", + "sha256": "3decf3cb7dda896b3429f02181cac77cecebe73ecc9dc1d11c3e726d276c35bf", + "language": "C/C++", + "lines": 287, + "truncated": false, + "block": 1, + "row": 421 + }, + { + "path": "src/compute/meanshift/io.cpp", + "sha256": "90628adb34ef6dcf67e889ba7eb2d12071ef2d59ae1fcee161b7420777f84a4f", + "language": "C++", + "lines": 82, + "truncated": false, + "block": 1, + "row": 221 + }, + { + "path": "src/compute/meanshift/mode_pruning.cpp", + "sha256": "836c5e3810abc7cf123e11ad75c0068b8865049f67309163de5cf458c621d45b", + "language": "C++", + "lines": 193, + "truncated": false, + "block": 1, + "row": 246 + }, + { + "path": "src/core/datahub.cpp", + "sha256": "3dc625fd9b09beaf85bfe16459683bb858ecfac0dac5d68eae80d6eb8d4a40d4", + "language": "C++", + "lines": 189, + "truncated": false, + "block": 1, + "row": 245 + }, + { + "path": "src/core/datahub.h", + "sha256": "dc15d58c8d76fe599536dab5e065f98b62e1bd46efcea6e25171961b70484d4b", + "language": "C/C++", + "lines": 66, + "truncated": false, + "block": 1, + "row": 338 + }, + { + "path": "src/core/dataset.cpp", + "sha256": "a0f37afaa9a6c59d7844b33e562afe9d1c69761078ee061c1a6e581b8acb6f8e", + "language": "C++", + "lines": 514, + "truncated": false, + "block": 1, + "row": 277 + }, + { + "path": "src/core/dataset.h", + "sha256": "7aa8b6151a0c051f49dbcd021b2ddc1cea29c2b315e3294e5d29a65f6537e621", + "language": "C/C++", + "lines": 144, + "truncated": false, + "block": 1, + "row": 403 + }, + { + "path": "src/core/fileio.cpp", + "sha256": "622f488390ab5f73e77a20f497c0d90809956882b610cfd499a466a21d52929c", + "language": "C++", + "lines": 174, + "truncated": false, + "block": 1, + "row": 251 + }, + { + "path": "src/core/fileio.h", + "sha256": "b56e037359c5f53381bea034fbfbe9e9bd96d1fd1a4b2ca0e736ab17677a558c", + "language": "C/C++", + "lines": 63, + "truncated": false, + "block": 1, + "row": 326 + }, + { + "path": "src/core/guistate.cpp", + "sha256": "9b6c4f2e47744da1c44103c9909b2189b7393c8a9f559dbb1b0abe95c15c7c9d", + "language": "C++", + "lines": 369, + "truncated": false, + "block": 1, + "row": 267 + }, + { + "path": "src/core/guistate.h", + "sha256": "ed2b1a575a7f98606ad162334184ff89303f4e561be5eac59dc2ecaadce3849c", + "language": "C/C++", + "lines": 90, + "truncated": false, + "block": 1, + "row": 352 + }, + { + "path": "src/core/jobregistry.cpp", + "sha256": "9f8c8c0ce5918859a2a5d723469984a086f5374b2745d6bb4ab4a4bd5cfbac66", + "language": "C++", + "lines": 196, + "truncated": false, + "block": 1, + "row": 244 + }, + { + "path": "src/core/jobregistry.h", + "sha256": "924908a67a471616770e602f2cbc21e9613a77d5fd0bb6f49f7ebd74444d4531", + "language": "C/C++", + "lines": 116, + "truncated": false, + "block": 1, + "row": 394 + }, + { + "path": "src/core/model.h", + "sha256": "e4db7b1e822a42902ba833e5901a859558f6df753a5240f1e73652caf314defb", + "language": "C/C++", + "lines": 184, + "truncated": false, + "block": 1, + "row": 400 + }, + { + "path": "src/core/proteindb.cpp", + "sha256": "a2ae810957b9f567d9c203ae3d34bd18a13f2b85e5c16e6c0a05dab7a9d4c8a2", + "language": "C++", + "lines": 250, + "truncated": false, + "block": 1, + "row": 254 + }, + { + "path": "src/core/proteindb.h", + "sha256": "89c3e67c292c3e389dcb25c882b832ffff129df1d188351f0b81db2c72a679e2", + "language": "C/C++", + "lines": 66, + "truncated": false, + "block": 1, + "row": 347 + }, + { + "path": "src/core/utils.h", + "sha256": "48984d51983920fdc40bf1d8e37286ea4268104eb5a03a8aae1efd4f06ed7b1d", + "language": "C/C++", + "lines": 118, + "truncated": false, + "block": 1, + "row": 402 + }, + { + "path": "src/core/viewer.cpp", + "sha256": "9a72b00d27351f1d0e14ca99f63db3f13fa216870592e0f916c61aeb9df08de3", + "language": "C++", + "lines": 68, + "truncated": false, + "block": 1, + "row": 217 + }, + { + "path": "src/core/viewer.h", + "sha256": "5e5623b300fcd099726136a0da2fd11e34c5fc8e5b059367321f04cf574e4011", + "language": "C/C++", + "lines": 75, + "truncated": false, + "block": 1, + "row": 354 + }, + { + "path": "src/core/windowstate.cpp", + "sha256": "190a5fab82eb1490b194f5ac1b16d381b54f1cb997188719bfdcbd358102b49d", + "language": "C++", + "lines": 65, + "truncated": false, + "block": 1, + "row": 215 + }, + { + "path": "src/core/windowstate.h", + "sha256": "98d690ce35f0dfc57dd646417c1c6675ade8d4a8cd7286a00078b467170341eb", + "language": "C/C++", + "lines": 71, + "truncated": false, + "block": 1, + "row": 345 + }, + { + "path": "src/distmat/distmatscene.cpp", + "sha256": "4d95df11f69bded360ab7a0566d44fc05aa57a5967374486f12a4ffe65846ed3", + "language": "C++", + "lines": 463, + "truncated": false, + "block": 1, + "row": 272 + }, + { + "path": "src/distmat/distmatscene.h", + "sha256": "b583f7fe6615370b9a34173cfb25ed7ae3caf42d0cc8137e9be18ef665193a3f", + "language": "C/C++", + "lines": 118, + "truncated": false, + "block": 1, + "row": 374 + }, + { + "path": "src/distmat/distmattab.cpp", + "sha256": "5780371202098917e56f8b9af6468fc6208fcd18e832428e3be149dce68c1e6b", + "language": "C++", + "lines": 118, + "truncated": false, + "block": 1, + "row": 234 + }, + { + "path": "src/distmat/distmattab.h", + "sha256": "812f0115eed473c9b038001ea3773f46d48c027d66b37e184befb963a45f77f4", + "language": "C/C++", + "lines": 39, + "truncated": false, + "block": 1, + "row": 307 + }, + { + "path": "src/featweights/featweightsscene.cpp", + "sha256": "7858996fc483f657041b0aa75b10977e2869b4a0d5bd75f0e01c68fae279b433", + "language": "C++", + "lines": 411, + "truncated": false, + "block": 1, + "row": 265 + }, + { + "path": "src/featweights/featweightsscene.h", + "sha256": "8e891938a565de3ff41ab8a4604c1c8d43f5c8846439ee0367be71b2b1a269ed", + "language": "C/C++", + "lines": 90, + "truncated": false, + "block": 1, + "row": 364 + }, + { + "path": "src/featweights/featweightstab.cpp", + "sha256": "a6fa98d9837595b023b0f976530cfdacc91da490b9d1b84895870fe26ca2878c", + "language": "C++", + "lines": 159, + "truncated": false, + "block": 1, + "row": 242 + }, + { + "path": "src/featweights/featweightstab.h", + "sha256": "9649bfe08926ce57b8e65c5fa077b8eda94fa165f14761cdeec766e48814737e", + "language": "C/C++", + "lines": 47, + "truncated": false, + "block": 1, + "row": 318 + }, + { + "path": "src/heatmap/heatmapscene.cpp", + "sha256": "7f8f09c2c8e5c986babdafab6a12c260f7802cd92af92456db2d8922011d5d5b", + "language": "C++", + "lines": 335, + "truncated": false, + "block": 1, + "row": 263 + }, + { + "path": "src/heatmap/heatmapscene.h", + "sha256": "926b06cbdd7bcf2f24396854869cfe66b43551964995998ccef9af6ef9633aef", + "language": "C/C++", + "lines": 113, + "truncated": false, + "block": 1, + "row": 371 + }, + { + "path": "src/heatmap/heatmaptab.cpp", + "sha256": "4c3aa1a5758d5d195941ddcbffcf2bc7590a246dd30836ad6ed8ace987ee4dd7", + "language": "C++", + "lines": 116, + "truncated": false, + "block": 1, + "row": 232 + }, + { + "path": "src/heatmap/heatmaptab.h", + "sha256": "2a9e23b6c6016b96505245bf828ddd6b00177d093f0065cefbe5c79b77f4667c", + "language": "C/C++", + "lines": 39, + "truncated": false, + "block": 1, + "row": 304 + }, + { + "path": "src/heatmap/heatmapview.cpp", + "sha256": "df9a19b151978d5dc09f61386ed173a2f8e3be779a1ce8c46f814460830aaaa4", + "language": "C++", + "lines": 114, + "truncated": false, + "block": 1, + "row": 226 + }, + { + "path": "src/heatmap/heatmapview.h", + "sha256": "c106684743bd339adcb4c6b6bfecebbf713cfb1e609d8a69dbbeadd2bb50c52b", + "language": "C/C++", + "lines": 41, + "truncated": false, + "block": 1, + "row": 317 + }, + { + "path": "src/main.cpp", + "sha256": "15b32706536866f1ae22131ac6bd858ae263bad5abaf34074bffd65c24374ad2", + "language": "C++", + "lines": 119, + "truncated": false, + "block": 1, + "row": 228 + }, + { + "path": "src/profiles/bnmschart.cpp", + "sha256": "88398841d6b075f51b7c6eaf9bef5560ee78d09762350ba6d3b4d2babc8464d5", + "language": "C++", + "lines": 168, + "truncated": false, + "block": 1, + "row": 236 + }, + { + "path": "src/profiles/bnmschart.h", + "sha256": "917f0cc27d21c3aea87a851d168f02847ba264c1d868b1679d1a3b629cc5226e", + "language": "C/C++", + "lines": 53, + "truncated": false, + "block": 1, + "row": 340 + }, + { + "path": "src/profiles/bnmsmodel.h", + "sha256": "14dc5a74154943fcc399aef2df927487fb44c31d9cd34f2ee150bd35e3dcbba6", + "language": "C/C++", + "lines": 24, + "truncated": false, + "block": 1, + "row": 300 + }, + { + "path": "src/profiles/bnmstab.cpp", + "sha256": "ff1c19947455c3287c9092d348a98a482cf3072609c0ccdb2633c4d03e775709", + "language": "C++", + "lines": 381, + "truncated": false, + "block": 1, + "row": 269 + }, + { + "path": "src/profiles/bnmstab.h", + "sha256": "6a20cb49edc8fe56bb24279fa8382a41cc413aec4eff0e4141e53d6e90dd2574", + "language": "C/C++", + "lines": 73, + "truncated": false, + "block": 1, + "row": 349 + }, + { + "path": "src/profiles/plotactions.cpp", + "sha256": "79dc55b8d6bc6a7b4958f22b6f9044221dc673e8a806a5573f950510f2895825", + "language": "C++", + "lines": 203, + "truncated": false, + "block": 1, + "row": 259 + }, + { + "path": "src/profiles/plotactions.h", + "sha256": "b305977fd0f5f28b2afafad1a009c43d7a2015eb9567d421ae4755b493db7caf", + "language": "C/C++", + "lines": 59, + "truncated": false, + "block": 1, + "row": 339 + }, + { + "path": "src/profiles/profilechart.cpp", + "sha256": "1b1381eb11cfc40e16a095fd082b08a9eadb9188a718907d94fe4f4015b51ace", + "language": "C++", + "lines": 507, + "truncated": false, + "block": 1, + "row": 274 + }, + { + "path": "src/profiles/profilechart.h", + "sha256": "d9bd90860cb3a5765564696c5cd605886b792fb81ddc8bfacfc1217a8178af33", + "language": "C/C++", + "lines": 115, + "truncated": false, + "block": 1, + "row": 373 + }, + { + "path": "src/profiles/profiletab.cpp", + "sha256": "93936cc8b5d9fba9f1e217fa401c74c2002b39c49091374aa25214fe39350b19", + "language": "C++", + "lines": 215, + "truncated": false, + "block": 1, + "row": 250 + }, + { + "path": "src/profiles/profiletab.h", + "sha256": "11876d54bac3b0a397917e0caab13ff2e2e85f267a8a21353cf41163c1676847", + "language": "C/C++", + "lines": 65, + "truncated": false, + "block": 1, + "row": 337 + }, + { + "path": "src/profiles/profilewidget.cpp", + "sha256": "57007fc1ff45c8668824c238dea7a94f5ff4da5c859024922fad9f04c5ef686f", + "language": "C++", + "lines": 235, + "truncated": false, + "block": 1, + "row": 258 + }, + { + "path": "src/profiles/profilewidget.h", + "sha256": "eb094e20e642bf2c8ad6e8f0b90964cdd8b4058c6fb56c487ddb56e33bfe1353", + "language": "C/C++", + "lines": 35, + "truncated": false, + "block": 1, + "row": 306 + }, + { + "path": "src/profiles/profilewindow.cpp", + "sha256": "ee6d0281fff03ca06e6d2586f3113c7537004552fcabc6b215b61b16da082d3b", + "language": "C++", + "lines": 46, + "truncated": false, + "block": 1, + "row": 218 + }, + { + "path": "src/profiles/profilewindow.h", + "sha256": "eca24dfe71419bd08b61385385c510b07667d63a77bfc8d2b860985ef1887beb", + "language": "C/C++", + "lines": 26, + "truncated": false, + "block": 1, + "row": 298 + }, + { + "path": "src/profiles/rangeselectitem.cpp", + "sha256": "1eacbdae46be913c7d24111b8743bde5d3af94d9257905179725855dd1ffb1ab", + "language": "C++", + "lines": 170, + "truncated": false, + "block": 1, + "row": 237 + }, + { + "path": "src/profiles/rangeselectitem.h", + "sha256": "1595148ce19fd1426daf27c6b468bdb23fdf35e5ca2c9828c1dc1d70de66d8ba", + "language": "C/C++", + "lines": 61, + "truncated": false, + "block": 1, + "row": 332 + }, + { + "path": "src/profiles/referencechart.cpp", + "sha256": "8c3c6021eea07f12ba8b82cbebc33c752083506dca99f5f17851d7dcca8250c9", + "language": "C++", + "lines": 192, + "truncated": false, + "block": 1, + "row": 247 + }, + { + "path": "src/profiles/referencechart.h", + "sha256": "dd1428ed089e516b0203e2a42dd5ce1cc52c2f4668675ad3f0278b4e841606f3", + "language": "C/C++", + "lines": 50, + "truncated": false, + "block": 1, + "row": 328 + }, + { + "path": "src/scatterplot/chart.cpp", + "sha256": "c2805a23a9f006787164db752a93a7658c10b3787ce47b47afb99e58ed3dc5a4", + "language": "C++", + "lines": 556, + "truncated": false, + "block": 1, + "row": 276 + }, + { + "path": "src/scatterplot/chart.h", + "sha256": "b5386944e5e9f9c6d794eba38c52cc361b17b93e56d64a74bfaf5f0b06726ddc", + "language": "C/C++", + "lines": 124, + "truncated": false, + "block": 1, + "row": 377 + }, + { + "path": "src/scatterplot/chartconfig.h", + "sha256": "b03ef028b43da3056944e4de4906c5ac37592b45a82872307e0fdd3c5447d6c6", + "language": "C/C++", + "lines": 29, + "truncated": false, + "block": 1, + "row": 301 + }, + { + "path": "src/scatterplot/chartview.cpp", + "sha256": "4059565947ac86199173ac69a8d0f478c25407293516ca280f57650cafc902f0", + "language": "C++", + "lines": 197, + "truncated": false, + "block": 1, + "row": 238 + }, + { + "path": "src/scatterplot/chartview.h", + "sha256": "529bc9b0ca23909b143dfcb8b63f86a19edd3018da1af62321cef33f58d62136", + "language": "C/C++", + "lines": 47, + "truncated": false, + "block": 1, + "row": 330 + }, + { + "path": "src/scatterplot/dimredtab.cpp", + "sha256": "5c8efca16e7bed1d461e42c1e3352362a0838490aeeddf2ea103709b73b007df", + "language": "C++", + "lines": 224, + "truncated": false, + "block": 1, + "row": 255 + }, + { + "path": "src/scatterplot/dimredtab.h", + "sha256": "1ec634d9e44cc61136169bae73778c298d6a6e8ae01a6620aaf55231c108820f", + "language": "C/C++", + "lines": 47, + "truncated": false, + "block": 1, + "row": 324 + }, + { + "path": "src/scatterplot/scattertab.cpp", + "sha256": "507b30c44a45afb8f26ff79b49b3b69309d2e593605c6c0fe60879b1bdca05b8", + "language": "C++", + "lines": 176, + "truncated": false, + "block": 1, + "row": 240 + }, + { + "path": "src/scatterplot/scattertab.h", + "sha256": "5a7514252a3795eb7610216e876598a1dcbf9e3323332fcc361075e3b7eb7424", + "language": "C/C++", + "lines": 41, + "truncated": false, + "block": 1, + "row": 313 + }, + { + "path": "src/storage/deserialize.cpp", + "sha256": "89f46303e8ee603e014566e6bbf3bdd84c6f5fa6dfb93f94703dd868b9ce2e12", + "language": "C++", + "lines": 211, + "truncated": false, + "block": 1, + "row": 257 + }, + { + "path": "src/storage/parse_dataset.cpp", + "sha256": "cadcc0f3bbb114ae0a1f0f9cd98190409ee0c960d455da4c6b50dd958ca5c603", + "language": "C++", + "lines": 240, + "truncated": false, + "block": 1, + "row": 260 + }, + { + "path": "src/storage/serialize.cpp", + "sha256": "cd78f2c68eeba81255e55a84ad0cad83d9895b1320d0a83a42569be383666364", + "language": "C++", + "lines": 217, + "truncated": false, + "block": 1, + "row": 248 + }, + { + "path": "src/storage/storage.cpp", + "sha256": "415d89d874c8de6129e7e952ce9e53c676c92396b87a50d81100225c17d38dc9", + "language": "C++", + "lines": 291, + "truncated": false, + "block": 1, + "row": 262 + }, + { + "path": "src/storage/storage.h", + "sha256": "b22eac0d944518dea74f2ab9fe1adb8979eef0862cf4faf073cece96b9fce099", + "language": "C/C++", + "lines": 84, + "truncated": false, + "block": 1, + "row": 367 + }, + { + "path": "src/widgets/famscontrol.cpp", + "sha256": "81e4cec6572553d911be3dd9a66b3835ad5cb7c1d02ebce2709c89625e8a3573", + "language": "C++", + "lines": 157, + "truncated": false, + "block": 1, + "row": 239 + }, + { + "path": "src/widgets/famscontrol.h", + "sha256": "966fa07090de2961d9b1b79bf303ba33cf15b6323031859f15ca5ecb5371c3a6", + "language": "C/C++", + "lines": 48, + "truncated": false, + "block": 1, + "row": 315 + }, + { + "path": "src/widgets/graphicsscene.cpp", + "sha256": "4ee5031294e8ba36c364905bd649ee8368469a275c9b3f4ad063f8f75ff6b765", + "language": "C++", + "lines": 7, + "truncated": false, + "block": 1, + "row": 206 + }, + { + "path": "src/widgets/graphicsscene.h", + "sha256": "93beed0ccc9d7e47eb4c2b2f47043a48063d84cc1825469db72d52ee8e454f27", + "language": "C/C++", + "lines": 23, + "truncated": false, + "block": 1, + "row": 294 + }, + { + "path": "src/widgets/graphicsview.cpp", + "sha256": "f955b63441ec24ddee347a70ad40c4eb366c28a7d89027911ed9233c205a7681", + "language": "C++", + "lines": 67, + "truncated": false, + "block": 1, + "row": 216 + }, + { + "path": "src/widgets/graphicsview.h", + "sha256": "781d4a0c06d45ae593545b199917187977ee66d8510928cff278a1e88d3c1fe2", + "language": "C/C++", + "lines": 35, + "truncated": false, + "block": 1, + "row": 310 + }, + { + "path": "src/widgets/jobstatus.cpp", + "sha256": "ff94ab545aeeb50720e2175023ec0ac8b4c0480f5458ff04a79cc4abe331fff7", + "language": "C++", + "lines": 134, + "truncated": false, + "block": 1, + "row": 233 + }, + { + "path": "src/widgets/jobstatus.h", + "sha256": "09c496f2b1daaaa22eab363e94513dba469fba41033e0b3cf15728324933466d", + "language": "C/C++", + "lines": 52, + "truncated": false, + "block": 1, + "row": 312 + }, + { + "path": "src/widgets/mainwindow.cpp", + "sha256": "ca52d097f5d018654440c3bc65cb53e1f8c11fce16ba4e03e06dcbe1f0978d4c", + "language": "C++", + "lines": 855, + "truncated": false, + "block": 1, + "row": 284 + }, + { + "path": "src/widgets/mainwindow.h", + "sha256": "fec593920c76d14cdc5f5bdcf3484a6cf0735cedcd6042ebfdf5f80e621b7821", + "language": "C/C++", + "lines": 135, + "truncated": false, + "block": 1, + "row": 393 + }, + { + "path": "src/widgets/spawndialog.cpp", + "sha256": "3f6f4883975b0855565948690b22b9d2fc7294898278349383b9f17eb546c63c", + "language": "C++", + "lines": 120, + "truncated": false, + "block": 1, + "row": 230 + }, + { + "path": "src/widgets/spawndialog.h", + "sha256": "de708536a467089a95328bc5fd14867c5fd3e9cf3c0dacffbd053c66bba43342", + "language": "C/C++", + "lines": 45, + "truncated": false, + "block": 1, + "row": 314 + } + ] +} \ No newline at end of file diff --git a/manifests/90/zenodo__19283737.json b/manifests/90/zenodo__19283737.json new file mode 100644 index 0000000000000000000000000000000000000000..84c09d4645517d24fda19bfb02e49b9df4c320a3 --- /dev/null +++ b/manifests/90/zenodo__19283737.json @@ -0,0 +1,21 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:19283737", + "url": "https://zenodo.org/records/19283737", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.txt", + "sha256": "457a0ee08d2b64892bfb7a7b4d839381b80779b99b93a9759f09210180e19b1c", + "language": "Text", + "lines": 110, + "truncated": false, + "block": 1, + "row": 11902 + } + ] +} \ No newline at end of file diff --git a/manifests/91/github.com__malvasochiara__freq-ness-for-age-related-differences-in-brain-networks-during-auditory-recognition-and-resting.json b/manifests/91/github.com__malvasochiara__freq-ness-for-age-related-differences-in-brain-networks-during-auditory-recognition-and-resting.json new file mode 100644 index 0000000000000000000000000000000000000000..6d8f96126adbe50af8d3b6a424553780c5b71695 --- /dev/null +++ b/manifests/91/github.com__malvasochiara__freq-ness-for-age-related-differences-in-brain-networks-during-auditory-recognition-and-resting.json @@ -0,0 +1,129 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/malvasochiara/freq-ness-for-age-related-differences-in-brain-networks-during-auditory-recognition-and-resting", + "url": "https://github.com/malvasochiara/FREQ-NESS-for-age-related-differences-in-brain-networks-during-auditory-recognition-and-resting", + "host": "github.com", + "commit": "e798c9ff809bda4c6f72d84cde2f9a056dc050ff", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "GED_single_subject_LandR_separately.m", + "sha256": "ac039282ba05a7c5bf4dc3d67b2b4be8ad2905b5c88b5af8a03acdd00b7fd9a9", + "language": "MATLAB", + "lines": 88, + "truncated": false, + "block": 1, + "row": 3567 + }, + { + "path": "GED_single_subject_singletrial.m", + "sha256": "2649d7f4de8dd06182b49199f179f4ec8dcd0d6828a461737aaf22f8c0a7ca00", + "language": "MATLAB", + "lines": 87, + "truncated": false, + "block": 1, + "row": 3561 + }, + { + "path": "GED_single_subject_singletrial_outlier.m", + "sha256": "266e2e0f91400c27456d3eba752184d33fc4a05759b15b55d867361e503065a6", + "language": "MATLAB", + "lines": 140, + "truncated": false, + "block": 1, + "row": 3778 + }, + { + "path": "LICENSE", + "sha256": "ac4e5d9297a29d6898b5aae56ce769f634f9051625c2ba21b21078da541427a8", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2138 + }, + { + "path": "computing_morletwavelet.m", + "sha256": "f4b64490f7979b426806bf9a1b7ee48aa169bff947a0a26f3f8ef3339d0d8257", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 1, + "row": 3098 + }, + { + "path": "filterFGx.m", + "sha256": "589f0f06e62d5054a167292daef45717e5a0912b568fbc5ead2c9c4a192ac7a9", + "language": "MATLAB", + "lines": 100, + "truncated": false, + "block": 1, + "row": 3285 + }, + { + "path": "islands.m", + "sha256": "7e5e568849ec25cdf99684305dce3480accef7aa1120d138255d015ad24ce4f5", + "language": "MATLAB", + "lines": 229, + "truncated": false, + "block": 1, + "row": 4105 + }, + { + "path": "many_plots.m", + "sha256": "06b3748bdaf7d087e88d24708e5104477268b04c6a55a8283825d3474330fcb8", + "language": "MATLAB", + "lines": 586, + "truncated": false, + "block": 1, + "row": 4250 + }, + { + "path": "morlet_transform_singlesub.m", + "sha256": "76952e4c0cc33f4ebc4940d146eca7c9ef49aaa8c140fb4a6456fc28ad90cb6d", + "language": "MATLAB", + "lines": 25, + "truncated": false, + "block": 1, + "row": 2656 + }, + { + "path": "pipeline_preproc_TSA2021_GED_C.m", + "sha256": "d6fafdda7f3147b8015baa5ca9f7b6486fb88d2ffc6bd621a331ea1f1202e6b4", + "language": "MATLAB", + "lines": 1236, + "truncated": false, + "block": 1, + "row": 4343 + }, + { + "path": "twoD_MCS_LBPD_D.m", + "sha256": "70666e6aff74f3c496d74c68c0ab6c93cbd6991e52e0cc805802ef835bb53d72", + "language": "MATLAB", + "lines": 175, + "truncated": false, + "block": 1, + "row": 3894 + }, + { + "path": "young_or_old.m", + "sha256": "a6fd7677cbb8995c2a21e72102890c357b123cde5d1dcf5521a295e775925462", + "language": "MATLAB", + "lines": 64, + "truncated": false, + "block": 1, + "row": 3262 + }, + { + "path": "young_or_old_evals.m", + "sha256": "48537d30afa3844dfeffc8791a1d8cb3ead8217bb5a347250ce53fad5fb18531", + "language": "MATLAB", + "lines": 124, + "truncated": false, + "block": 1, + "row": 3668 + } + ] +} \ No newline at end of file diff --git a/manifests/92/github.com__mica-mni__brainspace.json b/manifests/92/github.com__mica-mni__brainspace.json new file mode 100644 index 0000000000000000000000000000000000000000..8e7a0d702334a5966945646dca33ad6f5cc2eb3b --- /dev/null +++ b/manifests/92/github.com__mica-mni__brainspace.json @@ -0,0 +1,1101 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/mica-mni/brainspace", + "url": "https://github.com/MICA-MNI/BrainSpace", + "host": "github.com", + "commit": "8730de88ae32c4f88eeaf16ef2a6e53c5c32dc34", + "license": "BSD-3-Clause", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "29e709a76bf96e7f4aa77e8e7548bb54d37772130eb8809fa4859bb15a9c1294", + "language": "License", + "lines": 29, + "truncated": false, + "block": 1, + "row": 2199 + }, + { + "path": "README.rst", + "sha256": "947d3ecadabe7776efd181ff1665f5d00a2175cf8b801bceff12f6a8538826d9", + "language": "Text", + "lines": 43, + "truncated": false, + "block": 1, + "row": 11822 + }, + { + "path": "brainspace/__init__.py", + "sha256": "21e4fe2225229ac1e812586da5ad9bfe96a0211e457738b1a0610cb921233a42", + "language": "Python", + "lines": 5, + "truncated": false, + "block": 1, + "row": 5055 + }, + { + "path": "brainspace/_version.py", + "sha256": "636c5b41dba3d375ad2f6b91c9d3382eed4e36edcdb72fa0c237de9300042af0", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5014 + }, + { + "path": "brainspace/datasets/__init__.py", + "sha256": "af78127c741477423ba2fa376230bd3d5f77c2d0d9f191266be6c4a6cf93c168", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 1, + "row": 5424 + }, + { + "path": "brainspace/datasets/base.py", + "sha256": "5609adb1410fc4c8430768d233b65837e1f92379e2c822eab67844bc86e26840", + "language": "Python", + "lines": 322, + "truncated": false, + "block": 1, + "row": 8512 + }, + { + "path": "brainspace/examples/plot_tutorial0.py", + "sha256": "f40793d591f8e5cf3f12e455c36870cce0f0fd36c112401619485fd5ff9584f2", + "language": "Python", + "lines": 182, + "truncated": false, + "block": 1, + "row": 7805 + }, + { + "path": "brainspace/examples/plot_tutorial1.py", + "sha256": "f19f18393849caf896b16edcfc7b044f7688222c78c71a99dd60d9a06a3512f5", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 1, + "row": 6806 + }, + { + "path": "brainspace/examples/plot_tutorial2.py", + "sha256": "315b7a0481b0a9ad20f6c891d924e09dcfe0a33b48b78936fe667fccf0f8605b", + "language": "Python", + "lines": 253, + "truncated": false, + "block": 1, + "row": 8496 + }, + { + "path": "brainspace/examples/plot_tutorial3.py", + "sha256": "7ba97113988ce0167d653ec5b0bac2a63f91d8807d4d222d60ecf58d787584e7", + "language": "Python", + "lines": 304, + "truncated": false, + "block": 1, + "row": 8640 + }, + { + "path": "brainspace/gradient/__init__.py", + "sha256": "fb54cc6720d1d7c7e5e71fd14fce2537282ccd3be06714a89f284a116f3cf984", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 1, + "row": 5468 + }, + { + "path": "brainspace/gradient/alignment.py", + "sha256": "c0fb5542ece58cda30688f1a272395b42b493c69deb12e2157fb633eede875b3", + "language": "Python", + "lines": 266, + "truncated": false, + "block": 1, + "row": 8329 + }, + { + "path": "brainspace/gradient/embedding.py", + "sha256": "39ece71a01737f058020133730173988c81f9b57da737a242fe38bce3af0cd8c", + "language": "Python", + "lines": 477, + "truncated": false, + "block": 1, + "row": 8996 + }, + { + "path": "brainspace/gradient/gradient.py", + "sha256": "4eef356caa261aeccccf4187278d01da1aeab82e36db0387930da9fccd3089c7", + "language": "Python", + "lines": 334, + "truncated": false, + "block": 1, + "row": 8915 + }, + { + "path": "brainspace/gradient/kernels.py", + "sha256": "608a2264d1312fcc8dff4f62d7c13d5e89c6fa12976f395c8c268e29a71f4389", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 1, + "row": 6740 + }, + { + "path": "brainspace/gradient/utils.py", + "sha256": "65bf3e9dd89ceb20d610981520a7a6340e5440b20b0112fe322772e06c9e1418", + "language": "Python", + "lines": 276, + "truncated": false, + "block": 1, + "row": 8096 + }, + { + "path": "brainspace/mesh/__init__.py", + "sha256": "bc4e9dc6a494b1d324a791793b04d2e5c17e7e415b573ba93107e7984f96b2cc", + "language": "Python", + "lines": 10, + "truncated": false, + "block": 1, + "row": 5254 + }, + { + "path": "brainspace/mesh/array_operations.py", + "sha256": "3a034d4f99688d26298efe0b09ebecdbab53444cbce958b518d4184a35590426", + "language": "Python", + "lines": 976, + "truncated": false, + "block": 1, + "row": 9667 + }, + { + "path": "brainspace/mesh/mesh_cluster.py", + "sha256": "e6c06f1eb279e5753459d87eacc823392b35a1c6ab47b83c7ce346d76aa58d50", + "language": "Python", + "lines": 252, + "truncated": false, + "block": 1, + "row": 8301 + }, + { + "path": "brainspace/mesh/mesh_correspondence.py", + "sha256": "25007f0974d56b6062a5c518b66e6ec4b7ef791b8da1ff815182a9331de7f56c", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 1, + "row": 6724 + }, + { + "path": "brainspace/mesh/mesh_creation.py", + "sha256": "0eb49cf7f3deda35004ef58415c2302d106b86fabc03ecdbfa2c578a2e904702", + "language": "Python", + "lines": 110, + "truncated": false, + "block": 1, + "row": 6442 + }, + { + "path": "brainspace/mesh/mesh_elements.py", + "sha256": "4a94e4c736439e4b47cbb8e71b63d60b44503212874a202bd1a9434ff2aaa510", + "language": "Python", + "lines": 766, + "truncated": false, + "block": 1, + "row": 9311 + }, + { + "path": "brainspace/mesh/mesh_io.py", + "sha256": "a4ed5821720a98f17346483526b2d5e6e86f1b2c809a2d2b51cb4942f881c2c8", + "language": "Python", + "lines": 211, + "truncated": false, + "block": 1, + "row": 7825 + }, + { + "path": "brainspace/mesh/mesh_operations.py", + "sha256": "48c0eee00fbdb581a2ed45740b7a461798c595ea17e2fd43fac2fbb2606bf26a", + "language": "Python", + "lines": 587, + "truncated": false, + "block": 1, + "row": 9126 + }, + { + "path": "brainspace/null_models/__init__.py", + "sha256": "9a5fe6071c5b4757793407e476b9ff30bb951570dc7a93873dbfdd7a1265136e", + "language": "Python", + "lines": 12, + "truncated": false, + "block": 1, + "row": 5340 + }, + { + "path": "brainspace/null_models/moran.py", + "sha256": "e08a571c6498c82be34f42a44a2fbf3c0b2aa2f6db47e6bc0d8aa34f2b921a2a", + "language": "Python", + "lines": 308, + "truncated": false, + "block": 1, + "row": 8538 + }, + { + "path": "brainspace/null_models/spin.py", + "sha256": "703ddd7ca318d8de48bfb353e5f81f3578ef4d08ebdd7be6580f260ec5049217", + "language": "Python", + "lines": 347, + "truncated": false, + "block": 1, + "row": 8779 + }, + { + "path": "brainspace/null_models/variogram.py", + "sha256": "3983782fa69122f35d22818ab6048a363675a94325c8ee5069ca2b1f51e99aa8", + "language": "Python", + "lines": 2005, + "truncated": false, + "block": 1, + "row": 9819 + }, + { + "path": "brainspace/plotting/__init__.py", + "sha256": "4add5809e2e1e6094c379a0256f158ab16958117cde7a21c18f6d5d454045b5a", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 1, + "row": 5127 + }, + { + "path": "brainspace/plotting/base.py", + "sha256": "70823387dd3cf8a7bece19cf26c2ca5f40d3511d97cd714040c4f2c91768958c", + "language": "Python", + "lines": 501, + "truncated": false, + "block": 1, + "row": 9104 + }, + { + "path": "brainspace/plotting/colormaps.py", + "sha256": "fb74d179f76ae63a8499205897333a04ca310e3df27264904c5f8848f96003c5", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 1, + "row": 6815 + }, + { + "path": "brainspace/plotting/defaults_plotting.py", + "sha256": "d90125326cdae2b1d0fac4308c87a2a49cb96a96a3bea909471e5cf1c45dd66b", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 1, + "row": 6099 + }, + { + "path": "brainspace/plotting/sphinx_gallery_scrapper.py", + "sha256": "535de871c56e8bce5190397307ba1b9e67fbb65a1ab9841cb4ad8a0d5019c372", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 1, + "row": 5961 + }, + { + "path": "brainspace/plotting/surface_plotting.py", + "sha256": "a966b06d75684b66b9b584d2bba3ca2372f6d099ab8cbfd84efd42ce120f67d3", + "language": "Python", + "lines": 633, + "truncated": false, + "block": 1, + "row": 9478 + }, + { + "path": "brainspace/plotting/utils.py", + "sha256": "ac4602b2983ef73c6e6ada8ef5eb5de69a93391b23ed938d95b2ce88f02104a0", + "language": "Python", + "lines": 400, + "truncated": false, + "block": 1, + "row": 8776 + }, + { + "path": "brainspace/plotting/utils_qt.py", + "sha256": "84b3832ef8f33bda6a54f06908d62dc353c10d972155b10ec9db09e61eb71e11", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 1, + "row": 5415 + }, + { + "path": "brainspace/tests/test_aligned_lambdas.py", + "sha256": "d22c4cd22a509c4e054da91b8e457a988d8f66382e16c2701d6b0420c79b4b3a", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 1, + "row": 6887 + }, + { + "path": "brainspace/tests/test_alignment_methods.py", + "sha256": "0b9bc10d73044d7a000e560e9a092695b4522e7a15556a648e98e4a2420f0f6c", + "language": "Python", + "lines": 64, + "truncated": false, + "block": 1, + "row": 6690 + }, + { + "path": "brainspace/tests/test_alignment_options.py", + "sha256": "ea1132bf5d71d222ce46fb9dbec9d5f39157a6d1c9cbd16e9be8ca02c0126488", + "language": "Python", + "lines": 51, + "truncated": false, + "block": 1, + "row": 6275 + }, + { + "path": "brainspace/tests/test_colormaps.py", + "sha256": "40ceca66c92b34f2322c2c533f4dbb35c330bb0d869840c1bca59ce118b2aa06", + "language": "Python", + "lines": 43, + "truncated": false, + "block": 1, + "row": 5983 + }, + { + "path": "brainspace/tests/test_copy_methods.py", + "sha256": "c09c8c97de1606fdb96b5d7b48c366dcf761ad8edbaa9b5cced38150000437e5", + "language": "Python", + "lines": 187, + "truncated": false, + "block": 1, + "row": 7550 + }, + { + "path": "brainspace/tests/test_datasets.py", + "sha256": "1358845682558fff18c4a68cdfc3ebb13b5bdfe6cebd715dc39493d68f7f83e6", + "language": "Python", + "lines": 134, + "truncated": false, + "block": 1, + "row": 7020 + }, + { + "path": "brainspace/tests/test_embedding_validation.py", + "sha256": "2fab9ea38e54b4312c9fce26f7b551f6055a5aaf20ebb0cf662962d59c706101", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 1, + "row": 6231 + }, + { + "path": "brainspace/tests/test_gradient.py", + "sha256": "9770b4190303852a4f8f4af37c48da2ee424008f60db11d49f6f7d5d0b176d1f", + "language": "Python", + "lines": 150, + "truncated": false, + "block": 1, + "row": 7494 + }, + { + "path": "brainspace/tests/test_gradient_path_inputs.py", + "sha256": "4741e2b1a6bd4e671ee2ac66d100561234c7f1899109cc1df4ce7a53cd4c9046", + "language": "Python", + "lines": 133, + "truncated": false, + "block": 1, + "row": 7142 + }, + { + "path": "brainspace/tests/test_issue_133.py", + "sha256": "b762d23c61dec4b152e024c8222b893f36069e7e62d083f4aa97f38b5a6665ee", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 1, + "row": 5830 + }, + { + "path": "brainspace/tests/test_mesh.py", + "sha256": "1a358d7a562697cb13e4cbece3f31eae942fe8db1d65b5c5e139d8dcc8382027", + "language": "Python", + "lines": 441, + "truncated": false, + "block": 1, + "row": 8924 + }, + { + "path": "brainspace/tests/test_null_models.py", + "sha256": "321b180ea0802182ff4d17b5c363805ce11c1a501b92a9e8727b94e9cfe3bb12", + "language": "Python", + "lines": 260, + "truncated": false, + "block": 1, + "row": 8338 + }, + { + "path": "brainspace/tests/test_parcellation.py", + "sha256": "2555f72fbfd4fc8513e102ae32b02482a00f7cd94d1f1d2bf85d86b8f6407f7d", + "language": "Python", + "lines": 313, + "truncated": false, + "block": 1, + "row": 8519 + }, + { + "path": "brainspace/tests/test_plotting.py", + "sha256": "6a516418537dd7a6586cf6f67d97d8a3fd65588908ef9898bea5014bf558f9fd", + "language": "Python", + "lines": 274, + "truncated": false, + "block": 1, + "row": 8237 + }, + { + "path": "brainspace/tests/test_vtk94_compatibility.py", + "sha256": "31a99a1184e772feadad6bf891e30de4e326f332de3d3db4a0bd16af1086d9b5", + "language": "Python", + "lines": 208, + "truncated": false, + "block": 1, + "row": 7833 + }, + { + "path": "brainspace/tests/test_wrapping.py", + "sha256": "951c8241cf8514b15908f3be7569f95f03069d75787c12cf1cadcacb118d9f74", + "language": "Python", + "lines": 192, + "truncated": false, + "block": 1, + "row": 7778 + }, + { + "path": "brainspace/utils/__init__.py", + "sha256": "be0cdd0291a51cfebaf0ab81619c6e41dfaf456f75c5500db84a84c7b16f2982", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5021 + }, + { + "path": "brainspace/utils/parcellation.py", + "sha256": "4d5790952e6d29641e7daa94f6349df8d1f051e913db49acbc6087fe5d1a7395", + "language": "Python", + "lines": 369, + "truncated": false, + "block": 1, + "row": 8680 + }, + { + "path": "brainspace/vtk_interface/__init__.py", + "sha256": "d35961045003920ca758223f6b947b8f68e3249359762526d5818323cfa2d879", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 1, + "row": 5335 + }, + { + "path": "brainspace/vtk_interface/checks.py", + "sha256": "95a85c02a35f998ef15c3ce7ba94c2b2aeaf6771851224512e33d378eaedb1f0", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 1, + "row": 6604 + }, + { + "path": "brainspace/vtk_interface/decorators.py", + "sha256": "7e44d308e0c1c33129df509f60c019b8724e77d84635ed55c6eed7b7105f8618", + "language": "Python", + "lines": 300, + "truncated": false, + "block": 1, + "row": 8279 + }, + { + "path": "brainspace/vtk_interface/io_support/__init__.py", + "sha256": "e358d26585805e71f0b10c20714c349ec33a59b50f74c3e5549e97b4a9ec4194", + "language": "Python", + "lines": 8, + "truncated": false, + "block": 1, + "row": 5167 + }, + { + "path": "brainspace/vtk_interface/io_support/freesurfer_support.py", + "sha256": "7d97122db52c86e3049b45be6731ff474b5c9974481f4b8ecc87617ecd6c82d1", + "language": "Python", + "lines": 254, + "truncated": false, + "block": 1, + "row": 8259 + }, + { + "path": "brainspace/vtk_interface/io_support/gifti_support.py", + "sha256": "5f43415a5fcf05e1447cbfdf91bca6089ac3739c084c4c736cc492cb96c57248", + "language": "Python", + "lines": 159, + "truncated": false, + "block": 1, + "row": 7387 + }, + { + "path": "brainspace/vtk_interface/pipeline.py", + "sha256": "f910ae89250bfde555d43d5dd51e86a6fc83a2c99f66d43c453ab4e57dff4a15", + "language": "Python", + "lines": 352, + "truncated": false, + "block": 1, + "row": 8754 + }, + { + "path": "brainspace/vtk_interface/wrappers/__init__.py", + "sha256": "074716c06d8c19b941a048046e437d7f90d79503e658d7e7787085403f8871e3", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 1, + "row": 6818 + }, + { + "path": "brainspace/vtk_interface/wrappers/actor.py", + "sha256": "401f5adad2e4ea1bcd6e822eecdaf5d06d3bd8c5f14dee48a44234e66406be29", + "language": "Python", + "lines": 328, + "truncated": false, + "block": 1, + "row": 8500 + }, + { + "path": "brainspace/vtk_interface/wrappers/algorithm.py", + "sha256": "f89623241b4947985410ce182cbace7ce9094351728c2ea8c1498621cee4751a", + "language": "Python", + "lines": 327, + "truncated": false, + "block": 1, + "row": 8447 + }, + { + "path": "brainspace/vtk_interface/wrappers/base.py", + "sha256": "8aa9842905fdb5013f741c793ec76e1430a635b32de4d2255d3ed9ce2c730141", + "language": "Python", + "lines": 732, + "truncated": false, + "block": 1, + "row": 9407 + }, + { + "path": "brainspace/vtk_interface/wrappers/data_object.py", + "sha256": "03778106a86db4e0d30e07fa7ae468def9a4e8e1e57818024f4efd0d42fdeb57", + "language": "Python", + "lines": 561, + "truncated": false, + "block": 1, + "row": 9215 + }, + { + "path": "brainspace/vtk_interface/wrappers/lookup_table.py", + "sha256": "74156866b0cb6ad6551b03641541ed4b3631dbd5b2859b80ec911d423275dc5c", + "language": "Python", + "lines": 80, + "truncated": false, + "block": 1, + "row": 6481 + }, + { + "path": "brainspace/vtk_interface/wrappers/misc.py", + "sha256": "1cd7a2c5857604bee4119e18aa731adcdd7846fa3db554ccfe5c55119cf41b7d", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 1, + "row": 6662 + }, + { + "path": "brainspace/vtk_interface/wrappers/property.py", + "sha256": "5996ffe65292f482e2c5cf4323d22099b832d2fd68d73eeccdc39dde48b4e208", + "language": "Python", + "lines": 30, + "truncated": false, + "block": 1, + "row": 5507 + }, + { + "path": "brainspace/vtk_interface/wrappers/renderer.py", + "sha256": "ac6a0bb279ada57c96ce06640acf10198e4822427701842a965c78b2599af407", + "language": "Python", + "lines": 250, + "truncated": false, + "block": 1, + "row": 8180 + }, + { + "path": "brainspace/vtk_interface/wrappers/utils.py", + "sha256": "112c90e61fe3c0a443e2aaa4ddf3724c01a5209cf7de37aaf8cead3f191cb094", + "language": "Python", + "lines": 255, + "truncated": false, + "block": 1, + "row": 7844 + }, + { + "path": "docs/conf.py", + "sha256": "93616064f89c4381d33f4983383389b33d7cc33eb560ba01b5982da33b8015fa", + "language": "Python", + "lines": 249, + "truncated": false, + "block": 1, + "row": 8083 + }, + { + "path": "docs/python_doc/auto_examples/plot_tutorial0.ipynb", + "sha256": "9e069148faabd5145be7e2b2ff6962a459cd2aebc9b8c3db3a6aa1c79f88a78b", + "language": "Jupyter", + "lines": 187, + "truncated": false, + "block": 1, + "row": 1814 + }, + { + "path": "docs/python_doc/auto_examples/plot_tutorial0.py", + "sha256": "3c29bf5a79473b9efd1ddec80af01b93b3dd45d22e6a19734e28a369471f2884", + "language": "Python", + "lines": 182, + "truncated": false, + "block": 1, + "row": 7804 + }, + { + "path": "docs/python_doc/auto_examples/plot_tutorial1.ipynb", + "sha256": "17b1fd7acd13a1dc6394dec0b0f5cf543004531a3eaaee1188e0d963ebd6f4c5", + "language": "Jupyter", + "lines": 92, + "truncated": false, + "block": 1, + "row": 1725 + }, + { + "path": "docs/python_doc/auto_examples/plot_tutorial1.py", + "sha256": "f19f18393849caf896b16edcfc7b044f7688222c78c71a99dd60d9a06a3512f5", + "language": "Python", + "lines": 84, + "truncated": false, + "block": 1, + "row": 6806 + }, + { + "path": "docs/python_doc/auto_examples/plot_tutorial2.ipynb", + "sha256": "043bf4c2e12f2fd078450a076a8a654d3fb2765ad9f451047ee49d74fa6fb1af", + "language": "Jupyter", + "lines": 272, + "truncated": false, + "block": 1, + "row": 1895 + }, + { + "path": "docs/python_doc/auto_examples/plot_tutorial2.py", + "sha256": "315b7a0481b0a9ad20f6c891d924e09dcfe0a33b48b78936fe667fccf0f8605b", + "language": "Python", + "lines": 253, + "truncated": false, + "block": 1, + "row": 8496 + }, + { + "path": "docs/python_doc/auto_examples/plot_tutorial3.ipynb", + "sha256": "6a8953c7128b678306211b98e449ffc9217e98f3488da25ef1c065fac4bfed4e", + "language": "Jupyter", + "lines": 303, + "truncated": false, + "block": 1, + "row": 1903 + }, + { + "path": "docs/python_doc/auto_examples/plot_tutorial3.py", + "sha256": "7ba97113988ce0167d653ec5b0bac2a63f91d8807d4d222d60ecf58d787584e7", + "language": "Python", + "lines": 304, + "truncated": false, + "block": 1, + "row": 8640 + }, + { + "path": "matlab/@GradientMaps/GradientMaps.m", + "sha256": "34082120970e40d1606c874278879ee63e6bad527ee51595dbd45dbdc0a8f50c", + "language": "MATLAB", + "lines": 317, + "truncated": false, + "block": 1, + "row": 4159 + }, + { + "path": "matlab/@GradientMaps/fit.m", + "sha256": "5e5ea8de393e376fab1ab2d00e9822894fd7ff6a7927b6a7eb35f7ccdd3caee3", + "language": "MATLAB", + "lines": 142, + "truncated": false, + "block": 1, + "row": 3624 + }, + { + "path": "matlab/analysis_code/@variogram/variogram.m", + "sha256": "4b9b90b28171b201374116102bcb4c0093fc4ab862592a53ec265327d485931e", + "language": "MATLAB", + "lines": 339, + "truncated": false, + "block": 1, + "row": 4135 + }, + { + "path": "matlab/analysis_code/compute_mem.m", + "sha256": "ba02f0e808c768c9e630adef8e2a999923235938927c09f5d5d1910fdfd2b01f", + "language": "MATLAB", + "lines": 141, + "truncated": false, + "block": 1, + "row": 3629 + }, + { + "path": "matlab/analysis_code/diffusion_mapping.m", + "sha256": "9465a7509d8227782bcc84f73d203f1a286fe9cf9b4f6f5c3bb14914e829fe61", + "language": "MATLAB", + "lines": 86, + "truncated": false, + "block": 1, + "row": 3457 + }, + { + "path": "matlab/analysis_code/graph_is_connected.m", + "sha256": "9bb44bdd60b636686649d0faa6518bc90ea9872477f97a9406156aa70c490219", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 1, + "row": 2724 + }, + { + "path": "matlab/analysis_code/labelmean.m", + "sha256": "e5ca555a48cb4b51b611c5921ee48bfe436eae3f591fe0474b05d609dc521999", + "language": "MATLAB", + "lines": 94, + "truncated": false, + "block": 1, + "row": 3259 + }, + { + "path": "matlab/analysis_code/laplacian_eigenmaps.m", + "sha256": "f3fde6813863fc5104aa8712c1cc865889b809c7ec413eda66d06f56a1b89cf2", + "language": "MATLAB", + "lines": 72, + "truncated": false, + "block": 1, + "row": 3253 + }, + { + "path": "matlab/analysis_code/moran_randomization.m", + "sha256": "df91fc528147c12a028bf6c17383b31aa59291068ca904b69c13e7a2b1daff6b", + "language": "MATLAB", + "lines": 100, + "truncated": false, + "block": 1, + "row": 3437 + }, + { + "path": "matlab/analysis_code/procrustes_alignment.m", + "sha256": "570d07f37a70034b7e0ff6434d74bd800d8ca5abf504cb8602dc8195e52297d7", + "language": "MATLAB", + "lines": 106, + "truncated": false, + "block": 1, + "row": 3470 + }, + { + "path": "matlab/analysis_code/spin_permutations.m", + "sha256": "34a6279b1401235e9a25b7035e678e536634183aa51a85b5f3bb7ebcf0af16d9", + "language": "MATLAB", + "lines": 105, + "truncated": false, + "block": 1, + "row": 3429 + }, + { + "path": "matlab/example_data_loaders/load_conte69.m", + "sha256": "2276abe13ff44513bd83f3264725d8ada9cd4a1ad028b086fb7f70ada31ccb80", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 1, + "row": 2830 + }, + { + "path": "matlab/example_data_loaders/load_gradient.m", + "sha256": "f3cbc8d9e0387aad6b0af392aeaf28daaada646a589c7f4efaa3b774f5d8b8de", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 1, + "row": 2645 + }, + { + "path": "matlab/example_data_loaders/load_group_fc.m", + "sha256": "51ce6b5003c2eda5b4d1db803be3db7e7422ef017f75466e0598de6d1d584405", + "language": "MATLAB", + "lines": 35, + "truncated": false, + "block": 1, + "row": 2954 + }, + { + "path": "matlab/example_data_loaders/load_group_mpc.m", + "sha256": "9582ac7fc4d6795f1d7558d0ad93e0cde649dfa7e8b26600d1ad3c9c8a9d1421", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 1, + "row": 2852 + }, + { + "path": "matlab/example_data_loaders/load_marker.m", + "sha256": "bf9721d8cd73ba3909e5e0bb14d6c9137f1b883d8e9ce3ad3d9e8cdcf70b78a0", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 1, + "row": 2680 + }, + { + "path": "matlab/example_data_loaders/load_mask.m", + "sha256": "d6cc2276c75f83402702b18038ab8e9a3ad94378efebb2bc5e0377c3bdcd47af", + "language": "MATLAB", + "lines": 20, + "truncated": false, + "block": 1, + "row": 2690 + }, + { + "path": "matlab/example_data_loaders/load_parcellation.m", + "sha256": "dcf65f4b8edf50d8d3d7882cf6d9f3481045682d051426f44b1892a2fc1dbcb8", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 1, + "row": 2877 + }, + { + "path": "matlab/plot_data/@plot_hemispheres/colorlimits.m", + "sha256": "f3fa4bd9bf4ede2d33337badcd71d3d8689b7f348381ebe8af462b2ec8dab8d5", + "language": "MATLAB", + "lines": 28, + "truncated": false, + "block": 1, + "row": 2842 + }, + { + "path": "matlab/plot_data/@plot_hemispheres/colormaps.m", + "sha256": "544d481738333c283d7126eb35c10039391e2db58e779dbe33304849b95424e5", + "language": "MATLAB", + "lines": 30, + "truncated": false, + "block": 1, + "row": 2738 + }, + { + "path": "matlab/plot_data/@plot_hemispheres/labels.m", + "sha256": "2a7ce92af01dafad2097637e6ac99206bd269cec09271c8ff2cde6978ab0be2b", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 1, + "row": 3003 + }, + { + "path": "matlab/plot_data/@plot_hemispheres/plot_hemispheres.m", + "sha256": "c4531cdca7b46dba44c2b20772672ea42c159c2c78bc1682b3a45d92cac86711", + "language": "MATLAB", + "lines": 177, + "truncated": false, + "block": 1, + "row": 3835 + }, + { + "path": "matlab/plot_data/@plot_hemispheres/private/make_surface_plot.m", + "sha256": "2c93b4cdb730f27a14073214457c9fe8faaf5fd8e5bb34a6294a59972a15cd20", + "language": "MATLAB", + "lines": 27, + "truncated": false, + "block": 1, + "row": 2720 + }, + { + "path": "matlab/plot_data/@plot_hemispheres/private/plotter.m", + "sha256": "c3b4f748bb844604c0586c88143b15994419e222e4ace30bc0bfabd3c8299b6e", + "language": "MATLAB", + "lines": 68, + "truncated": false, + "block": 1, + "row": 3189 + }, + { + "path": "matlab/plot_data/@plot_hemispheres/private/process_views.m", + "sha256": "5e0eb09abc502759c4c8ae674ebfc7e7a72932a02538870fd83225a428524e1a", + "language": "MATLAB", + "lines": 50, + "truncated": false, + "block": 1, + "row": 2970 + }, + { + "path": "matlab/plot_data/gradient_in_euclidean.m", + "sha256": "31affcd82e76bdeb45f96767ec876b2d9c697b818c47ab8732487a68e33129b3", + "language": "MATLAB", + "lines": 108, + "truncated": false, + "block": 1, + "row": 3531 + }, + { + "path": "matlab/plot_data/scree_plot.m", + "sha256": "6200dadaa80cde61fbe90816af129884ccfef3ca0cc01b7dd2661b85a79fba64", + "language": "MATLAB", + "lines": 18, + "truncated": false, + "block": 1, + "row": 2593 + }, + { + "path": "matlab/surface_manipulation/SurfStatReadSurf1.m", + "sha256": "fcae8df268a8d69960e68ee09c0a208eea0fc72bc361ec67af488feb7e075761", + "language": "MATLAB", + "lines": 164, + "truncated": false, + "block": 1, + "row": 3751 + }, + { + "path": "matlab/surface_manipulation/SurfStatWriteSurf1.m", + "sha256": "10f83a2e289b3e8825f966cbcbdc71c4a592d86573aed5a52ef73873a44755ed", + "language": "MATLAB", + "lines": 96, + "truncated": false, + "block": 1, + "row": 3417 + }, + { + "path": "matlab/surface_manipulation/combine_surfaces.m", + "sha256": "d11d46f54ac1e40db71f1e7286eba46eacb51a1d0498cdd8ed6e7d23a0e34600", + "language": "MATLAB", + "lines": 29, + "truncated": false, + "block": 1, + "row": 2737 + }, + { + "path": "matlab/surface_manipulation/convert_surface.m", + "sha256": "9ad6914fc59f0ddb572266d322dcf6242b6efecdc49ace065c408245d4512d12", + "language": "MATLAB", + "lines": 122, + "truncated": false, + "block": 1, + "row": 3485 + }, + { + "path": "matlab/surface_manipulation/full2parcel.m", + "sha256": "274faa248dd176bd95c49a29ec68d453bfd412cfb8e2d3cd72bdeb8b70f4dde7", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 1, + "row": 2568 + }, + { + "path": "matlab/surface_manipulation/parcel2full.m", + "sha256": "2e6448d0103b3edc6d5290661acdb411ae7ab78bbacfe446de8f7d3ee1c3a200", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 1, + "row": 2979 + }, + { + "path": "matlab/surface_manipulation/read_surface.m", + "sha256": "c843908cb20e887cfb0c7a1fc0fb1d18dffbd777e3a01b29db25df9b7010f219", + "language": "MATLAB", + "lines": 13, + "truncated": false, + "block": 1, + "row": 2543 + }, + { + "path": "matlab/surface_manipulation/split_surfaces.m", + "sha256": "fe29df9742d2743aabadd3c82f234dda9a4ef9242bae7962337e8c3fc168941d", + "language": "MATLAB", + "lines": 41, + "truncated": false, + "block": 1, + "row": 2999 + }, + { + "path": "matlab/surface_manipulation/surface_to_graph.m", + "sha256": "bdbb9faf7b5d280469e23875270da730fb3e26a03c93008aa11c6b58ea1bfc76", + "language": "MATLAB", + "lines": 56, + "truncated": false, + "block": 1, + "row": 3099 + }, + { + "path": "matlab/surface_manipulation/write_surface.m", + "sha256": "7b9cb471acedda6cc940f319a3a1ea0f212098541bf3cfe6e5b4a67c405d61c9", + "language": "MATLAB", + "lines": 11, + "truncated": false, + "block": 1, + "row": 2524 + }, + { + "path": "matlab/tests/@datasets_tests/datasets_tests.m", + "sha256": "9eed5666ba46d3b1c9233b0b83808011faae9a8e3b400c115eb688c890387ed8", + "language": "MATLAB", + "lines": 83, + "truncated": false, + "block": 1, + "row": 3329 + }, + { + "path": "matlab/tests/@diffusion_mapping_tests/diffusion_mapping_tests.m", + "sha256": "3dde51d05a1fe2e78146e13338de5c7a45e72a3cb367cafd005b7270424da8ac", + "language": "MATLAB", + "lines": 57, + "truncated": false, + "block": 1, + "row": 3194 + }, + { + "path": "matlab/tests/@utils_tests/utils_tests.m", + "sha256": "e1ae5e9fe6d358401248ce035bcd3fe91e2af584ff21055852e58100e1247e89", + "language": "MATLAB", + "lines": 34, + "truncated": false, + "block": 1, + "row": 2792 + }, + { + "path": "setup.py", + "sha256": "751d88a5ea0722a1d25e210149b734ff27bcbcc2fec7b6ae8b3b259689ac067d", + "language": "Python", + "lines": 86, + "truncated": false, + "block": 1, + "row": 6631 + } + ] +} \ No newline at end of file diff --git a/manifests/92/github.com__whfbio__signet.json b/manifests/92/github.com__whfbio__signet.json new file mode 100644 index 0000000000000000000000000000000000000000..5184e59f8f7acb4df78abd3bb132cef5373597f8 --- /dev/null +++ b/manifests/92/github.com__whfbio__signet.json @@ -0,0 +1,84 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/whfbio/signet", + "url": "https://github.com/whfbio/SigNET", + "host": "github.com", + "commit": "addee5c5435af5ba993bbdce4c7c004f9b97e63c", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "2.1_commot_direct.py", + "sha256": "c7a2c9a2bd09fb4e83a8c985edea521d694aaca9a2181c2fa8a185fc40413b3c", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 1, + "row": 6153 + }, + { + "path": "2.2_commot_indirect.py", + "sha256": "bc52abe0a70fa9e04269b0f4ef59a786f69ed03a6af31cd549d68530d3370925", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 1, + "row": 6044 + }, + { + "path": "2.3_grn.py", + "sha256": "0e996b8a9945ed98fec4281ed13ce37a1b584331261ae98ab6e75b8c402c19f6", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 1, + "row": 7086 + }, + { + "path": "2.4_Commot_Result_summary.py", + "sha256": "1ab943faffba46db12e9082397227471dcb1eff36a7eb2eded5045305062c210", + "language": "Python", + "lines": 190, + "truncated": false, + "block": 1, + "row": 8321 + }, + { + "path": "2.5_SigNET_network.R", + "sha256": "a7093bf1bb8625da09900b76c577bbaf40375392b2e67f1d8e5a757bbaafac16", + "language": "R", + "lines": 156, + "truncated": false, + "block": 1, + "row": 10300 + }, + { + "path": "2.6_main_figure_generation.R", + "sha256": "a092dc07fa0ec8024aa442315e016e4f5a67e793770b7a562d2a3504b89010e6", + "language": "R", + "lines": 649, + "truncated": false, + "block": 1, + "row": 10591 + }, + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "84fd72db5c60c6ca1b1ad4c55cb342fdbf9f911b8e0c4f7e4bfa374d707bcc5e", + "language": "Text", + "lines": 310, + "truncated": false, + "block": 1, + "row": 11978 + } + ] +} \ No newline at end of file diff --git a/manifests/93/github.com__allenneuraldynamics__aind-ephys-postprocessing.json b/manifests/93/github.com__allenneuraldynamics__aind-ephys-postprocessing.json new file mode 100644 index 0000000000000000000000000000000000000000..36fac1260f336adb6bf973709ca32af74d0bb245 --- /dev/null +++ b/manifests/93/github.com__allenneuraldynamics__aind-ephys-postprocessing.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/allenneuraldynamics/aind-ephys-postprocessing", + "url": "https://github.com/AllenNeuralDynamics/aind-ephys-postprocessing", + "host": "github.com", + "commit": "e8823a8a6637c7ea74d4465c32d0178f0abf66dd", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "d7609c858f47823b9d7cee46253bffc40e93fd55effa744aa249e97a603c65cb", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1139 + }, + { + "path": "README.md", + "sha256": "70426ce0241717878a6aaf7a0957c1dc8a105bcff70ed711fac9e8b89b502389", + "language": "Text", + "lines": 206, + "truncated": false, + "block": 2, + "row": 2641 + }, + { + "path": "code/run_capsule.py", + "sha256": "04bfa606edfd88cb8ba3bb84073030bb5bc58fc858aa859fce508982345a31e4", + "language": "Python", + "lines": 393, + "truncated": false, + "block": 2, + "row": 2155 + } + ] +} \ No newline at end of file diff --git a/manifests/93/github.com__kamentsvetanov__functional_resilience_ftd.json b/manifests/93/github.com__kamentsvetanov__functional_resilience_ftd.json new file mode 100644 index 0000000000000000000000000000000000000000..a0660949151dfb0db5b097cf3129c7bbe38e1bc6 --- /dev/null +++ b/manifests/93/github.com__kamentsvetanov__functional_resilience_ftd.json @@ -0,0 +1,30 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/kamentsvetanov/functional_resilience_ftd", + "url": "https://github.com/kamentsvetanov/functional_resilience_ftd", + "host": "github.com", + "commit": "801b08a0fd3c96bb0b4d9516a46f01106af522ea", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "README.md", + "sha256": "df6f9b168819268c5e06bc3ece9c7b062f61984b8ea7b079df603ce28c93c467", + "language": "Text", + "lines": 12, + "truncated": false, + "block": 1, + "row": 11780 + } + ] +} \ No newline at end of file diff --git a/manifests/93/zenodo__17984431.json b/manifests/93/zenodo__17984431.json new file mode 100644 index 0000000000000000000000000000000000000000..cda5968212f89c9bd06bb03bcd08d6b3961bbd5a --- /dev/null +++ b/manifests/93/zenodo__17984431.json @@ -0,0 +1,84 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:17984431", + "url": "https://doi.org/10.5281/zenodo.17984431", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "Orca HPC Simulations/sub_orca.sh", + "sha256": "fca64d7b812026cb24be88e8dd157ae529dcb9ccbf7bc90ad90a1527d5573d96", + "language": "Shell", + "lines": 42, + "truncated": false, + "block": 1, + "row": 11608 + }, + { + "path": "Python Codes/Comparison_LiO2_LiAsc.py", + "sha256": "e864b21d638a2d0e3de3033f720c2a5d7011e5d4af0b12cb11f21b75af125421", + "language": "Python", + "lines": 446, + "truncated": false, + "block": 1, + "row": 9152 + }, + { + "path": "Python Codes/Convert_mhz_to_ut.py", + "sha256": "d15ef26b835dc1a647f0820b1e7a332152fc14701d3345d40fc8adae9889b19e", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 1, + "row": 5843 + }, + { + "path": "Python Codes/Heat graphs_LiAsc_H5.py", + "sha256": "3a5c429e91af829a146192e263189793ed573ed5aaae71c0e948a1f0e015342e", + "language": "Python", + "lines": 466, + "truncated": false, + "block": 1, + "row": 9127 + }, + { + "path": "Python Codes/Heat_graphs_LiAsc_N5.py", + "sha256": "5bf5b20491ec3f6125394b4c0c4f72c66aaab3db7ad5e66c6f25c84facfa41fa", + "language": "Python", + "lines": 479, + "truncated": false, + "block": 1, + "row": 9169 + }, + { + "path": "Python Codes/Lithium_Ascorbyl_H5.py", + "sha256": "c9096e45ebb250f58a632e6e2a0fee43d52b41c427c18df32b1fb52f245907fd", + "language": "Python", + "lines": 361, + "truncated": false, + "block": 1, + "row": 8708 + }, + { + "path": "Python Codes/Lithium_Ascorbyl_N5.py", + "sha256": "7b4a5c51a3be624497e3546a5debc5791945837e97bf12d691255cd6f5fb00bc", + "language": "Python", + "lines": 320, + "truncated": false, + "block": 1, + "row": 8453 + }, + { + "path": "Python Codes/view_molecules.py", + "sha256": "57f0160f1f276e539bca1dccb79e8fd46fcaff520816556e7b9b002f62ea3322", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 1, + "row": 5062 + } + ] +} \ No newline at end of file diff --git a/manifests/93/zenodo__19663881.json b/manifests/93/zenodo__19663881.json new file mode 100644 index 0000000000000000000000000000000000000000..f2d649fc7426044072c37787038554d0d4ff7a31 --- /dev/null +++ b/manifests/93/zenodo__19663881.json @@ -0,0 +1,84 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:19663881", + "url": "https://doi.org/10.5281/zenodo.19663881", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "c1d25fbd5f215a7de3023e0866ec1644e6c40fad77bf4140bfee6e9f888577c4", + "language": "Text", + "lines": 52, + "truncated": false, + "block": 1, + "row": 11892 + }, + { + "path": "export.ipynb", + "sha256": "8b91bc2ac946df8a597e953b1870de727ae60751e6494f8f70595e8c7cfa5b9e", + "language": "Jupyter", + "lines": 89, + "truncated": false, + "block": 1, + "row": 1818 + }, + { + "path": "models/gmx_aimnet.py", + "sha256": "8fd9565817bd70015ff757e615b88976d6ddacca2c3a67cf99612c076d4f7566", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 1, + "row": 6012 + }, + { + "path": "models/gmx_ani.py", + "sha256": "98127cf461b6cfc94ecd08eeed86d2eb6a87dfe039aa9a7603157dfc9625852d", + "language": "Python", + "lines": 147, + "truncated": false, + "block": 1, + "row": 7567 + }, + { + "path": "models/gmx_emle.py", + "sha256": "ec36123abd64f1fde58afc3ba7ffaa865a7e9c8bdf2f898a5433d5e0b446f9fd", + "language": "Python", + "lines": 67, + "truncated": false, + "block": 1, + "row": 6495 + }, + { + "path": "models/gmx_mace.py", + "sha256": "fc757fef1ed3d03fdb1a6eca906f1b0b9fbf7aff7b60b50963f9c0355230d058", + "language": "Python", + "lines": 175, + "truncated": false, + "block": 1, + "row": 7853 + }, + { + "path": "models/gmx_nutmeg.py", + "sha256": "2f39ba877a8fab619ca6eb7161e515594e788d11afda6fb9c0cdc562962de2fd", + "language": "Python", + "lines": 107, + "truncated": false, + "block": 1, + "row": 7376 + }, + { + "path": "wrap-gmx-model.py", + "sha256": "157a68e1c2274414aff005a47842bae52df843800ca779b4c429b40dd14eb362", + "language": "Python", + "lines": 208, + "truncated": false, + "block": 1, + "row": 8306 + } + ] +} \ No newline at end of file diff --git a/manifests/95/zenodo__18947789.json b/manifests/95/zenodo__18947789.json new file mode 100644 index 0000000000000000000000000000000000000000..6e7d68056c11551e932ef1e7d4a612d615174628 --- /dev/null +++ b/manifests/95/zenodo__18947789.json @@ -0,0 +1,228 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:18947789", + "url": "https://doi.org/10.5281/zenodo.18947789", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "Model_code_data/Eva_chemo_control_mod.m", + "sha256": "b8b61961a7a2fd25be918fe7cdeb6c24898928523c3def64ad2619fa2222ad16", + "language": "MATLAB", + "lines": 247, + "truncated": false, + "block": 2, + "row": 1440 + }, + { + "path": "Model_code_data/Fit_Model_chemo_control.m", + "sha256": "cd8391a40bfba7585a440c927c0e8fa1fcd1fc04565dcffa72eaf1033687506e", + "language": "MATLAB", + "lines": 188, + "truncated": false, + "block": 2, + "row": 1392 + }, + { + "path": "Model_code_data/Model_Figure_final.m", + "sha256": "0ede9e2b881717dc52843f23746ba9e746dae6073357fa01e10a14f4cb51a673", + "language": "MATLAB", + "lines": 1090, + "truncated": false, + "block": 2, + "row": 1551 + }, + { + "path": "Model_code_data/Model_oneloop.m", + "sha256": "2306bae69387e275bbc5a46d9028f48b7cdd213857525b5ed5ad07839a60b2ab", + "language": "MATLAB", + "lines": 54, + "truncated": false, + "block": 2, + "row": 1236 + }, + { + "path": "Model_code_data/example_model_pfc_inact_re_act.m", + "sha256": "d2bd8c524b25cdebda8d58cd4357a94a2df35f8f389e3f1f74dc5fa45258f72c", + "language": "MATLAB", + "lines": 302, + "truncated": false, + "block": 2, + "row": 1434 + }, + { + "path": "Model_code_data/example_model_pfc_inact_re_act_2.m", + "sha256": "927e7722597e85d6525b968bd3c8ac657c5b074b1e289f3f7f5fe2041b0d74a4", + "language": "MATLAB", + "lines": 458, + "truncated": false, + "block": 2, + "row": 1499 + }, + { + "path": "Model_code_data/fminsearchbnd.m", + "sha256": "711755c7fd90feb7a09574f83f84897e0fa1be30db6ac4b5ee8fad4a2753c5e8", + "language": "MATLAB", + "lines": 282, + "truncated": false, + "block": 2, + "row": 1512 + }, + { + "path": "Model_code_data/model_CNO.m", + "sha256": "d22e32b403998ea510fe805ee9e22d8a3e1e5a32c2dbef28a0b1b85d0897577f", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 2, + "row": 1303 + }, + { + "path": "Model_code_data/model_act_2lp_rand.m", + "sha256": "f76165647f5786900d4c394063210f8e4fccec492b91677619a0d3bc111acc97", + "language": "MATLAB", + "lines": 92, + "truncated": false, + "block": 2, + "row": 1351 + }, + { + "path": "Model_code_data/model_act_2lp_rand_v2.m", + "sha256": "a0a96190c106a8609c9f5a2a8e58a3c99c4b89f5d41132688d5765f30ba6400f", + "language": "MATLAB", + "lines": 95, + "truncated": false, + "block": 2, + "row": 1355 + }, + { + "path": "Model_code_data/model_act_CNO_2lp_rand.m", + "sha256": "2e155be1c682c2d38408adb96e5d45e70f82df237c62b7126c84c466f7acf984", + "language": "MATLAB", + "lines": 93, + "truncated": false, + "block": 2, + "row": 1357 + }, + { + "path": "Model_code_data/model_act_oneloop.m", + "sha256": "b3e3f547e09f123c91adc632c4307cdced1948df1c22e5b4d94ca00e90b0c276", + "language": "MATLAB", + "lines": 112, + "truncated": false, + "block": 2, + "row": 1384 + }, + { + "path": "Model_code_data/model_act_onlyaud.m", + "sha256": "554d78070aa10991d95601daabe080e7125b39cb4869d4430d3b965545961fa1", + "language": "MATLAB", + "lines": 96, + "truncated": false, + "block": 2, + "row": 1353 + }, + { + "path": "Model_code_data/model_act_onlyaud_aversion.m", + "sha256": "55c5bd7a72e6d67890ed8c73e72827bfa1c929b01c3e4574e648d2d26e665879", + "language": "MATLAB", + "lines": 91, + "truncated": false, + "block": 2, + "row": 1345 + }, + { + "path": "Model_code_data/sim_CNO_56percent.m", + "sha256": "6e10c2a61e3560cb620cf48d1daef7415571dabb30aee17d525d6ee865ee99c7", + "language": "MATLAB", + "lines": 132, + "truncated": false, + "block": 2, + "row": 1387 + }, + { + "path": "Model_code_data/sim_CNO_mult.m", + "sha256": "2f1c55f1b4c5bd5f0cc1ff37aec77589f872f6c4a91584f59a60e4051e20123c", + "language": "MATLAB", + "lines": 263, + "truncated": false, + "block": 2, + "row": 1462 + }, + { + "path": "Model_code_data/sim_cno_ac_learn_boot2.m", + "sha256": "d8b90708e756171bbbeddf49db9fbd768b03f2b0658dbd90bb70d4c9c84eff38", + "language": "MATLAB", + "lines": 84, + "truncated": false, + "block": 2, + "row": 1337 + }, + { + "path": "Model_code_data/sim_post_learn_boot.m", + "sha256": "563d5843c62b7f183bdbed8cd9f3158b0ddd87dd1dd0ce96d57c8580f57ce6ff", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 2, + "row": 1244 + }, + { + "path": "Model_code_data/wrap_2lp_rand.m", + "sha256": "2534c832d0e78c36008a3a8b877756d8245b5372ad66c2f416c0159aca572d42", + "language": "MATLAB", + "lines": 80, + "truncated": false, + "block": 2, + "row": 1325 + }, + { + "path": "Model_code_data/wrap_2lp_rand_v2.m", + "sha256": "349ba590fbd20ca21e1df47b86d214283e178a3891339a77e683f6a13615613b", + "language": "MATLAB", + "lines": 84, + "truncated": false, + "block": 2, + "row": 1341 + }, + { + "path": "Model_code_data/wrap_onlyaud.m", + "sha256": "815e96f18f1a6be96846767e924a26b66d249705fe5a5d8c171e735440022fba", + "language": "MATLAB", + "lines": 85, + "truncated": false, + "block": 2, + "row": 1332 + }, + { + "path": "Model_code_data/wrap_onlyaud_aversion.m", + "sha256": "e91fac87ace168a7ace8f3eacef08b77b92c3295bb95820389e20e13020c4631", + "language": "MATLAB", + "lines": 84, + "truncated": false, + "block": 2, + "row": 1336 + }, + { + "path": "Model_code_data/wraponeloop.m", + "sha256": "5818bb0ecd259740e85b43348efd108cca66400c302d0af750c3b416532bfb12", + "language": "MATLAB", + "lines": 81, + "truncated": false, + "block": 2, + "row": 1326 + }, + { + "path": "README.md", + "sha256": "5e33a2a7504db0506fd9c8a68aeec4afb3b04f5efbec6e637f152471bbe1645f", + "language": "Text", + "lines": 2, + "truncated": false, + "block": 2, + "row": 2587 + } + ] +} \ No newline at end of file diff --git a/manifests/97/zenodo__21264356.json b/manifests/97/zenodo__21264356.json new file mode 100644 index 0000000000000000000000000000000000000000..3e8841a120617fa57dd67687b549b3a60bb658fb --- /dev/null +++ b/manifests/97/zenodo__21264356.json @@ -0,0 +1,102 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:21264356", + "url": "https://doi.org/10.5281/zenodo.21264356", + "host": "zenodo.org", + "commit": "", + "license": "CC-BY-4.0", + "license_confirmed_by": "license of the archive's record", + "redistribution": "yes", + "files": [ + { + "path": "README.md", + "sha256": "192d9a630a0d929019e4dc369bebd897b8f38aeb4049b661c4ba2f4763fb9d12", + "language": "Text", + "lines": 201, + "truncated": false, + "block": 1, + "row": 11948 + }, + { + "path": "Spatialmodal/data_process.py", + "sha256": "89dba1049e162158d9888c8bf007b5bdaba0d7561e1f2cc95ecfb8a60c426556", + "language": "Python", + "lines": 553, + "truncated": false, + "block": 1, + "row": 9244 + }, + { + "path": "Spatialmodal/reconstruction.py", + "sha256": "cf65f50213603c34874705230828c3fe1edba72c669b18c77794f07f8a4f0e67", + "language": "Python", + "lines": 188, + "truncated": false, + "block": 1, + "row": 7922 + }, + { + "path": "Spatialmodal/spatialmodal.py", + "sha256": "0fa34d543bebcc885901935cc1405371282902b7f970c6f06145dbb8a289a70f", + "language": "Python", + "lines": 443, + "truncated": false, + "block": 1, + "row": 9210 + }, + { + "path": "Spatialmodal/utils.py", + "sha256": "64c11d484a105cf97d9d7d4669e1b1b1eb33e75fe2b963ae5aebeae20f408fdb", + "language": "Python", + "lines": 101, + "truncated": false, + "block": 1, + "row": 6958 + }, + { + "path": "Tutorial/Breast_Cancer.ipynb", + "sha256": "93f50972088182b62d6638f1b14b8722c4991fb3d6f0aab9ec4773dcb72358bb", + "language": "Jupyter", + "lines": 150, + "truncated": false, + "block": 1, + "row": 1789 + }, + { + "path": "Tutorial/Chicken_Heart.ipynb", + "sha256": "c72ac0077270f4d96df48ae86fcd5caea696b518521ab2d35bf969bd8b5401db", + "language": "Jupyter", + "lines": 161, + "truncated": false, + "block": 1, + "row": 1812 + }, + { + "path": "Tutorial/DLPFC.ipynb", + "sha256": "381fa88da0bbd2bd8642897ddd6582efaff0bcdb834c0548fd63948745f10f6e", + "language": "Jupyter", + "lines": 114, + "truncated": false, + "block": 1, + "row": 1795 + }, + { + "path": "Tutorial/MTG.ipynb", + "sha256": "da1254247d87bb90d54e609f9630d7914cf0be8055b2758d0d41e2320a22cad4", + "language": "Jupyter", + "lines": 67, + "truncated": false, + "block": 1, + "row": 1705 + }, + { + "path": "Tutorial/Mouse_Brain.ipynb", + "sha256": "33cb78392255f72cb6238b1ab5ab3b3dc8a235366c42ec550706794cd68930d8", + "language": "Jupyter", + "lines": 90, + "truncated": false, + "block": 1, + "row": 1747 + } + ] +} \ No newline at end of file diff --git a/manifests/98/github.com__amano-k-lab__mame_hil.json b/manifests/98/github.com__amano-k-lab__mame_hil.json new file mode 100644 index 0000000000000000000000000000000000000000..24d2136ad1c97ce242823877ec9c433e2e61c475 --- /dev/null +++ b/manifests/98/github.com__amano-k-lab__mame_hil.json @@ -0,0 +1,1677 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/amano-k-lab/mame_hil", + "url": "https://github.com/amano-k-lab/mame_hil", + "host": "github.com", + "commit": "f8750eca778f8f3c90c7a0db7ba6e5970e71d0a5", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "6ef4474fa79a8d01e691b13969f1e5c7cdbcffa2c3c14582dcc8e31952cbf458", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2110 + }, + { + "path": "README.md", + "sha256": "45b520f5cabbdd079f3c2b3e861177980e52cf1913b526beec3083e92edb7d11", + "language": "Text", + "lines": 68, + "truncated": false, + "block": 1, + "row": 11873 + }, + { + "path": "abx_app/AttackCNN/0_classification.py", + "sha256": "27e0c7f22a10d595e6edd75acc9d665f3eec3d49ec862ba7acee1366fe896bf9", + "language": "Python", + "lines": 33, + "truncated": false, + "block": 1, + "row": 5757 + }, + { + "path": "abx_app/AttackCNN/1_extract_gram_matrix.py", + "sha256": "f63441ef78a762b1e76e8c7e3179e0d1a56681c6c595d4684ff14b67ff410653", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 1, + "row": 6001 + }, + { + "path": "abx_app/AttackCNN/2_extract_ica.py", + "sha256": "ee45540f3c13f1508fa988ce3b2cf763dd5b29a134bf089c78e758e9c7f1a35b", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 6167 + }, + { + "path": "abx_app/AttackCNN/2a_extract_pca.py", + "sha256": "3b250ae241f75c71d27e7399b294b368a0e713dc1cc034490ffcce7fe55f6ebc", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 1, + "row": 5997 + }, + { + "path": "abx_app/AttackCNN/3_image_decomposition_components.py", + "sha256": "024db93ab96bf9577b8fcf3b4bfeb44987ffadbd16678ee756f5a1e36117356d", + "language": "Python", + "lines": 241, + "truncated": false, + "block": 1, + "row": 8117 + }, + { + "path": "abx_app/AttackCNN/3_image_gen_demo.py", + "sha256": "3f9f8d677d3744e149128b3f739edd911f957fb827a0aad0b6721d72f6831b75", + "language": "Python", + "lines": 136, + "truncated": false, + "block": 1, + "row": 7378 + }, + { + "path": "abx_app/AttackCNN/3_image_gen_grid.py", + "sha256": "b735f15a49d98304d485c627ba7da2325b230a9e83b555931cbefd6ae9bdc73a", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 1, + "row": 7067 + }, + { + "path": "abx_app/AttackCNN/3_image_gen_models.py", + "sha256": "f90caebab82d0cbdc82350dc42a3d15bf49ddc6f9596ba0513a67ca41c44b274", + "language": "Python", + "lines": 142, + "truncated": false, + "block": 1, + "row": 7427 + }, + { + "path": "abx_app/AttackCNN/4_select_ica_components.py", + "sha256": "ff3ea47cfe2f21e3172ae291bb1db0dbd1ed3584254589559c473415b2ed646e", + "language": "Python", + "lines": 31, + "truncated": false, + "block": 1, + "row": 5948 + }, + { + "path": "abx_app/AttackCNN/4a_select_pca_components.py", + "sha256": "22843633d3e540970197c9e5f3e1781ac52d17b6cfa7c264337a71c5bf8d5510", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 1, + "row": 5691 + }, + { + "path": "abx_app/AttackCNN/5_extract_original_images.py", + "sha256": "5eece23b73dbdeecd05e51bad8e394337a824c73e0f131f4170ad2f2b3ad3bcb", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 1, + "row": 7253 + }, + { + "path": "abx_app/AttackCNN/6_tune_param.py", + "sha256": "bd71e68ba36d41863b0a0d65a34a91744286faf0b38704695c113f3feba7e149", + "language": "Python", + "lines": 157, + "truncated": false, + "block": 1, + "row": 7443 + }, + { + "path": "abx_app/AttackCNN/7_fit_param.py", + "sha256": "908b7efc32f5d0e5633a483a8195ac96e00ca40fa75debc13bf6b7d74155e135", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 1, + "row": 5939 + }, + { + "path": "abx_app/AttackCNN/8_evaluate_param.py", + "sha256": "9e5d6fcded2456f453610753c8e2134032ed938d0380b52c1837141a175eb6d2", + "language": "Python", + "lines": 135, + "truncated": false, + "block": 1, + "row": 7325 + }, + { + "path": "abx_app/AttackCNN/8a_get_final_loss.py", + "sha256": "52de7acea8689e1bc30537cfc74b5c31faca3ea9f599340da45dc3b9084250e8", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 1, + "row": 6846 + }, + { + "path": "abx_app/AttackCNN/9_spearman_test.py", + "sha256": "fd5e25c7d73c289f543196425c2a0ccc66d4a635867c0e072b0c28283e0585f7", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 1, + "row": 7129 + }, + { + "path": "abx_app/AttackCNN/__init__.py", + "sha256": "61465905f1811c704657227307dc22f1fd697cc81831d4234d4bbf0f181c40b9", + "language": "Python", + "lines": 11, + "truncated": false, + "block": 1, + "row": 5164 + }, + { + "path": "abx_app/AttackCNN/attack_examples.py", + "sha256": "e0afc9d50037967a01af1990cc7fdc2c595d6064cff25f462ed3400f0cb350d4", + "language": "Python", + "lines": 103, + "truncated": false, + "block": 1, + "row": 6905 + }, + { + "path": "abx_app/AttackCNN/decomposition_histogram.py", + "sha256": "6d78c8b747d137ed256ee611a3257ee2b31feb7ac4c168ce91e8bc3517795692", + "language": "Python", + "lines": 99, + "truncated": false, + "block": 1, + "row": 6980 + }, + { + "path": "abx_app/AttackCNN/extract_pca.py", + "sha256": "f8436d1e6343d8e9496929fc38b747d45e2ed6b228cc27d2d22a3d58c820dd72", + "language": "Python", + "lines": 24, + "truncated": false, + "block": 1, + "row": 5672 + }, + { + "path": "abx_app/AttackCNN/generate_image_from_condition.py", + "sha256": "f2da089dbcc8b098330af681b1afd108b62f92f067c0a2115ec21b849a2a3e55", + "language": "Python", + "lines": 190, + "truncated": false, + "block": 1, + "row": 7755 + }, + { + "path": "abx_app/AttackCNN/utils/activation_manager.py", + "sha256": "37305f6b8e0149eb6cd7608f63bf47b20a83fabedde63bf13639cb1f1fe4a088", + "language": "Python", + "lines": 120, + "truncated": false, + "block": 1, + "row": 7383 + }, + { + "path": "abx_app/AttackCNN/utils/alpha_function.py", + "sha256": "22bef249ffba1fba0138cf010532891b2f5d4989fcdb2d51e566b3c83761fe82", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 1, + "row": 6635 + }, + { + "path": "abx_app/AttackCNN/utils/attack_result.py", + "sha256": "cf93846e2c77e7686f677e54ba3f73a88559335ddaf9490bdf6961b5a67bf8ce", + "language": "Python", + "lines": 39, + "truncated": false, + "block": 1, + "row": 6119 + }, + { + "path": "abx_app/AttackCNN/utils/condition.py", + "sha256": "8a6a0c7983b7b2c1cabcd37bfe7eb2e4782e9967252bda12b6538340677d6de0", + "language": "Python", + "lines": 181, + "truncated": false, + "block": 1, + "row": 7986 + }, + { + "path": "abx_app/AttackCNN/utils/data_utils.py", + "sha256": "f49257dd0e3aeb604d8cca09877f1b4a9426f34d6b36a5efc382958989bedc93", + "language": "Python", + "lines": 68, + "truncated": false, + "block": 1, + "row": 6362 + }, + { + "path": "abx_app/AttackCNN/utils/decomposition_handler.py", + "sha256": "2545e180213e2087b99f2c87c3187fe017c80bd8c3ff1137d9482bb39fb9a640", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5266 + }, + { + "path": "abx_app/AttackCNN/utils/generate_target_gram_matrix.py", + "sha256": "8f57d31326bc002828f869a86f9cb963131c196b87fbe8de397ed64f1f1b0971", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 1, + "row": 6133 + }, + { + "path": "abx_app/AttackCNN/utils/ica.py", + "sha256": "b1707c140890b342913d5d0fdd42a1c8aff8e9bdf23dde98f087d104aacd60c1", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 1, + "row": 7877 + }, + { + "path": "abx_app/AttackCNN/utils/model_utils.py", + "sha256": "33d7f004d9aff5803cddb0395e760848e3f059bf0ae0a933312b7ab74fdf3fb3", + "language": "Python", + "lines": 38, + "truncated": false, + "block": 1, + "row": 5763 + }, + { + "path": "abx_app/AttackCNN/utils/pca.py", + "sha256": "7f721a71592cacaf2d24257fa2d0b74ca9edade907287a78cfa1f3dee5347ea9", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 1, + "row": 7456 + }, + { + "path": "abx_app/AttackCNN/utils/pgd_attack.py", + "sha256": "43ea20c7446705303105f32087dc912db6d00477d1e6e087179fdff447d5c84e", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 1, + "row": 6996 + }, + { + "path": "abx_app/AttackCNN/utils/visualization.py", + "sha256": "5f3e7d2a580d392ef44a02b2f9573139f116154fc29423c39c54f1f0963b0a67", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 1, + "row": 6573 + }, + { + "path": "abx_app/admin.py", + "sha256": "d685dfd334d0f0499694ac8f9d17f906491f89f5a37420408c4125eb0cc56000", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 1, + "row": 5818 + }, + { + "path": "abx_app/apps.py", + "sha256": "128f3eff275f11456d6a174ccf9da8f03dc15270eadd06de29209224ff152c9f", + "language": "Python", + "lines": 6, + "truncated": false, + "block": 1, + "row": 5118 + }, + { + "path": "abx_app/eye_tracks.py", + "sha256": "cfe3996ce41e78ae7ce4f78bff629268c5f0b33b0e2379543382d1c3b65c2f57", + "language": "Python", + "lines": 62, + "truncated": false, + "block": 1, + "row": 6485 + }, + { + "path": "abx_app/forms.py", + "sha256": "0ebd3ee3cc77c85e0addbb5094eedf8ca296e8c5190325e2c394a0adc290d871", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5363 + }, + { + "path": "abx_app/migrations/0001_initial.py", + "sha256": "9b1a1740fe157c42c6bff4824880822d069da610e0ee74790f41a3bf5f34729b", + "language": "Python", + "lines": 188, + "truncated": false, + "block": 1, + "row": 8016 + }, + { + "path": "abx_app/migrations/0002_rename_indices_miss_resultsabx_first_stim.py", + "sha256": "b0d63652d6631eed326c981a967e14d8175d4cfdf1973583cde95ec828564751", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5275 + }, + { + "path": "abx_app/migrations/0003_remove_resultsabx_condition_root.py", + "sha256": "e0bfe9c285e5fc7ae2b06e82313c40f0ba5edbc25dc586f0ce063654e638a67c", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5270 + }, + { + "path": "abx_app/migrations/0004_remove_resultsabx_task_name.py", + "sha256": "a65539097c1ea287e2b7135e51f29429a0d169ccae9830db280e3ec221376dc7", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5261 + }, + { + "path": "abx_app/migrations/0005_remove_user_is_first_adjustment_and_more.py", + "sha256": "32ffce638412c2212d3d31fa22e8eef89e6de6ef26f3604027dc54e64b40f70d", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 1, + "row": 5368 + }, + { + "path": "abx_app/migrations/0006_rename_list_tasks_user_path_next_and_more.py", + "sha256": "674f19a95650d387ca704761c88668b9e6cb68d5de1edac1de7971a53b26caf5", + "language": "Python", + "lines": 44, + "truncated": false, + "block": 1, + "row": 5833 + }, + { + "path": "abx_app/migrations/0007_alter_user_epsilon_dim_1_plus.py", + "sha256": "0c5816a5faf37d0c5f8cce252348a53fd4c6a1150b7221c8216edcfee00624b1", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5323 + }, + { + "path": "abx_app/migrations/0008_remove_user_epsilon_dim_1_plus.py", + "sha256": "f2c181682dd4f58880b5ed4b98b469547ed449688aed1007229ba7c07957f8a5", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5262 + }, + { + "path": "abx_app/migrations/0009_user_epsilon_dim_1_plus.py", + "sha256": "c48fb2d0d6a3d182c9570262a1f0031964512a8a1add7d9ee420b84ef02a22fb", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5308 + }, + { + "path": "abx_app/migrations/0010_alter_user_epsilon_dim_1_plus.py", + "sha256": "9ae01d5e8c532916c23a2fcf09261305403d4d42ec535efb86621dd1e30ce7bb", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5302 + }, + { + "path": "abx_app/migrations/0011_user_max_rep_user_num_per_trial_user_path_img_root.py", + "sha256": "c75aa48dfcc4584dc15f4c8657dfc7e36fca8754a585fa631e6dd52537bbc0fe", + "language": "Python", + "lines": 27, + "truncated": false, + "block": 1, + "row": 5533 + }, + { + "path": "abx_app/migrations/0012_user_val_rep_ready.py", + "sha256": "71d458663cc6bbdd2b53b9fee735667f19dd4d1f328363dc377919b7346f7c44", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 1, + "row": 5330 + }, + { + "path": "abx_app/migrations/0013_remove_user_epsilon_dim_1_plus_remove_user_max_rep_and_more.py", + "sha256": "6508e2ea6450600a3447c48f91e1c6191392113a2ed48ada950cc7fc00cb9edf", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 1, + "row": 6035 + }, + { + "path": "abx_app/migrations/0014_user_list_responses.py", + "sha256": "1bf98ebe5a3d732e60289d3f11bbd1a5537825b176327749a6897de48ca2a02f", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 1, + "row": 5343 + }, + { + "path": "abx_app/migrations/0015_rename_current_dim_user_count_cond_and_more.py", + "sha256": "ce8e5adc65367e49c178d276d95d456f6127e74f9c829ea5364270a11c111692", + "language": "Python", + "lines": 57, + "truncated": false, + "block": 1, + "row": 6054 + }, + { + "path": "abx_app/migrations/0016_rename_dict_res_threshold_user_dict_all_res_responses_and_more.py", + "sha256": "f1b1487d2b3c4a1304d86660ffa6750d54eb42a5605fd373dbce7dbdea8c8d3c", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 1, + "row": 5436 + }, + { + "path": "abx_app/migrations/0017_rename_dict_res_responses_user_dict_res_threshold.py", + "sha256": "7269ffb13f5cb9c1e1f8501fa6083149b2ae28ee9fad52f5d9278be5edcf8965", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 1, + "row": 5339 + }, + { + "path": "abx_app/migrations/0018_user_is_not_fixate.py", + "sha256": "92372dc41ec6be29f7b2fb11bf6a2cef93703888790dcaf73024a3b998f94228", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 1, + "row": 5333 + }, + { + "path": "abx_app/migrations/0019_alter_user_is_not_fixate.py", + "sha256": "b8125fa635e6a8599c2b953991f880f03d828f785bb65cf46cb7b8b400f6c7c7", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 1, + "row": 5296 + }, + { + "path": "abx_app/migrations/0020_remove_user_is_not_fixate_user_is_fixate.py", + "sha256": "51622b206852f336b21294ab7fab602e9d94b3059df4ba124fad15530492379d", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 1, + "row": 5391 + }, + { + "path": "abx_app/migrations/0021_rename_dict_all_res_responses_user_dict_all_res_actual_value_and_more.py", + "sha256": "1a0675f25cf17ccfc7681ac460d69da55a32acef477a44a0f5b69143a4e10e66", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 1, + "row": 6055 + }, + { + "path": "abx_app/migrations/0022_alter_user_is_fixate.py", + "sha256": "d1f0829f67fcc545697a9ae29a32de47045f06fdac9e490425b4e7bd544ca0d1", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 1, + "row": 5348 + }, + { + "path": "abx_app/migrations/0023_user_miss_eye_position.py", + "sha256": "338011eec3c4b399c81bbe4b07743b0af74bc3b22c51bc47ef781890eeba5e1c", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 1, + "row": 5299 + }, + { + "path": "abx_app/migrations/0024_user__list_conditions_name_copy.py", + "sha256": "a230f4b739c9845352b78410f06149860d5bf646c2fac663c01d440ef453179e", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 1, + "row": 5307 + }, + { + "path": "abx_app/migrations/0025_rename_dict_responses_buffer_user_dict_all_responses_buffer.py", + "sha256": "e0c9aa33da80f124c08197ebcbd3b8302f77057fbbfd49aadda9443c1effcbb7", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 1, + "row": 5311 + }, + { + "path": "abx_app/models.py", + "sha256": "6bfecfd3c119984d4f94f3a10e091b54f45010d6d663882b993e010ecef8bb1f", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 1, + "row": 6774 + }, + { + "path": "abx_app/tasks.py", + "sha256": "ff20f8dbd4abfcca3caf0657c58333cc18d8ae45ba2435aa57d51f61c36792bf", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 1, + "row": 7551 + }, + { + "path": "abx_app/tests.py", + "sha256": "9ab6c6191360e63c1b4c9b5659aef348a743c9e078be68190917369e4e9563e8", + "language": "Python", + "lines": 3, + "truncated": false, + "block": 1, + "row": 5027 + }, + { + "path": "abx_app/urls.py", + "sha256": "198eaf5ad9d0bd702aad9e0ae12cac1b89d3778c0e1af357a4486c2d7476c910", + "language": "Python", + "lines": 20, + "truncated": false, + "block": 1, + "row": 5546 + }, + { + "path": "abx_app/utils.py", + "sha256": "04e73a75c6e05e1c0d847c072d84f6e1b653e820603f2ba8fe1ac597f2db3e37", + "language": "Python", + "lines": 155, + "truncated": false, + "block": 1, + "row": 7910 + }, + { + "path": "abx_app/views.py", + "sha256": "15fffb8a91393e5fa4789b1df726f6d4978cbb5a964d35ff278a19dc61299552", + "language": "Python", + "lines": 309, + "truncated": false, + "block": 1, + "row": 8528 + }, + { + "path": "ana/ana_fit_psych.py", + "sha256": "5299855e5ed0fd768ee8fb3ad90e080afe59e5dac6434e3829fdd93bf57b7706", + "language": "Python", + "lines": 214, + "truncated": false, + "block": 1, + "row": 8074 + }, + { + "path": "ana/radar_chart.py", + "sha256": "5a6f810fdadae199205a82a3153cc1d078db46e7b3f2b24b9725ab5e98300691", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 1, + "row": 7023 + }, + { + "path": "analysis.ipynb", + "sha256": "ca71686d987e8b504aeef9a30b882d529ac2fa6fa45989629ad5c8ebeef8a96b", + "language": "Jupyter", + "lines": 794, + "truncated": false, + "block": 1, + "row": 2018 + }, + { + "path": "config/asgi.py", + "sha256": "50a4b6538c4d418b0df314fe60dfadeb1e91ea843df621f8e1430e3f891f2c32", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5294 + }, + { + "path": "config/settings.py", + "sha256": "816fa1c5bbf00f8a35c48bde22f0bc484e0dc96326605bf485a5b73eb7d9fc95", + "language": "Python", + "lines": 125, + "truncated": false, + "block": 1, + "row": 6843 + }, + { + "path": "config/urls.py", + "sha256": "b127ab26105d730deef9d34ffc32f1779e612d2ab4b28885eaf91bcdc6d395f7", + "language": "Python", + "lines": 25, + "truncated": false, + "block": 1, + "row": 5634 + }, + { + "path": "config/wsgi.py", + "sha256": "29004d3df1a489748dd1d4a941dcdee4953acd12afda988b221bcb1987dc1a14", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5293 + }, + { + "path": "manage.py", + "sha256": "b828c5d0f3086ae38d0432ec8b8a492b50dd011c11c7fdf32cd7182a5f5c2288", + "language": "Python", + "lines": 22, + "truncated": false, + "block": 1, + "row": 5492 + }, + { + "path": "scripts/run_all.py", + "sha256": "05ba17ad690cac1e16b1be76ce0505b5f73ab083cd5421fe1868485599e34be8", + "language": "Python", + "lines": 125, + "truncated": false, + "block": 1, + "row": 7180 + }, + { + "path": "static/abx_app/js/addScreenPositionFunction.js", + "sha256": "5eaf55e41d544b8bc5496a983b8d3a94838e045a8c05b91e9010be9ed9e79e36", + "language": "JavaScript", + "lines": 263, + "truncated": false, + "block": 1, + "row": 1353 + }, + { + "path": "static/abx_app/js/app_exp/exp_Scene.js", + "sha256": "e23378016bd8a32ed24b0716b085767d3e76998beeb183bafbd0c8f0aaff0441", + "language": "JavaScript", + "lines": 380, + "truncated": false, + "block": 1, + "row": 1406 + }, + { + "path": "static/abx_app/js/app_exp/exp_SceneManager.js", + "sha256": "cbfef84ddda0caea27b76c6d03ac84f008353d4f177b95c92428f874f9b8ba90", + "language": "JavaScript", + "lines": 123, + "truncated": false, + "block": 1, + "row": 1272 + }, + { + "path": "static/abx_app/js/app_exp/exp_config.js", + "sha256": "70ac804bdfd763340005a632f4559aba280f37130d02e8de20d9da243845e8c9", + "language": "JavaScript", + "lines": 19, + "truncated": false, + "block": 1, + "row": 859 + }, + { + "path": "static/abx_app/js/app_exp/exp_main.js", + "sha256": "a2ba868c6ab06a47edd98375f28ba1c3c32247aa98c519e572b09ec181638590", + "language": "JavaScript", + "lines": 34, + "truncated": false, + "block": 1, + "row": 828 + }, + { + "path": "static/abx_app/js/app_intro/intro_Scene.js", + "sha256": "d43e25d3925379c5b1f918fed03534bd0591839453a4f73357e2c36dc82e08b8", + "language": "JavaScript", + "lines": 86, + "truncated": false, + "block": 1, + "row": 1016 + }, + { + "path": "static/abx_app/js/app_intro/intro_SceneManager.js", + "sha256": "307eb1a631f1434c42c48416a28ad36fefd284caaea183107f71d9b665bf5c3c", + "language": "JavaScript", + "lines": 32, + "truncated": false, + "block": 1, + "row": 708 + }, + { + "path": "static/abx_app/js/app_intro/intro_config.js", + "sha256": "ad2230f44782b74b5aee9542e7e10f21dd1891af205e39c95413ebd5371f11d5", + "language": "JavaScript", + "lines": 20, + "truncated": false, + "block": 1, + "row": 862 + }, + { + "path": "static/abx_app/js/app_intro/intro_main.js", + "sha256": "fa4b908e73bd08c0a91e5885488bfceda85a1e6641c8c59cd80d5d54ea7bcfd5", + "language": "JavaScript", + "lines": 29, + "truncated": false, + "block": 1, + "row": 754 + }, + { + "path": "static/abx_app/js/config.js", + "sha256": "ef291b3539b2cf9190db16eb37d6b6b73afc40c4adaf8f80b5c05718556b41f2", + "language": "JavaScript", + "lines": 81, + "truncated": false, + "block": 1, + "row": 1109 + }, + { + "path": "static/abx_app/js/config_intro.js", + "sha256": "2b6e12f8958f0431d6a0ea009be514fc1a811d206f91539e6341120295e2ce85", + "language": "JavaScript", + "lines": 84, + "truncated": false, + "block": 1, + "row": 1160 + }, + { + "path": "static/abx_app/js/csrfControl.js", + "sha256": "d65ad3cf6ad39c41b98aba063e2ad1ed3c2d2817ab6e2d6f458bcf5ad06b7de8", + "language": "JavaScript", + "lines": 26, + "truncated": false, + "block": 1, + "row": 834 + }, + { + "path": "static/abx_app/js/customWidgetsBehavior.js", + "sha256": "40d3a4f566c1e1808a23ef293693e906d39f1812cb89cf7037315831320d5558", + "language": "JavaScript", + "lines": 20, + "truncated": false, + "block": 1, + "row": 779 + }, + { + "path": "static/abx_app/js/instructionSlide.js", + "sha256": "43c6443ebfe1a45b771fe9e76da3c1bdeaf882ff0a3236dd1eac87c2f15df3bb", + "language": "JavaScript", + "lines": 242, + "truncated": false, + "block": 1, + "row": 1368 + }, + { + "path": "static/abx_app/js/jquery-3.4.1.min.js", + "sha256": "0925e8ad7bd971391a8b1e98be8e87a6971919eb5b60c196485941c3c1df089a", + "language": "JavaScript", + "lines": 2, + "truncated": false, + "block": 1, + "row": 1543 + }, + { + "path": "static/abx_app/js/list_fake.js", + "sha256": "e8c835f7fb286526e003e532316302235ba202603797198e85630ab1ae0545e2", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 515 + }, + { + "path": "static/abx_app/js/list_orig.js", + "sha256": "e7e63ce301372ffa4c70440ea334cc2134339272ae68096e013857344e2d14d2", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 514 + }, + { + "path": "static/abx_app/js/material.js", + "sha256": "1bdbb2a1b5fc66a7086d29ec37a6c128797025f611f7de626e812548be60ddf2", + "language": "JavaScript", + "lines": 65, + "truncated": false, + "block": 1, + "row": 1083 + }, + { + "path": "static/abx_app/js/p5.min.js", + "sha256": "181da59e2b6b58dd0f96f236b11f0b2e37054a0aecc68fc37fb7ec28d6a43ecc", + "language": "JavaScript", + "lines": 2, + "truncated": true, + "block": 1, + "row": 1566 + }, + { + "path": "static/abx_app/js/utils.js", + "sha256": "12d5ede3177c07962e462baf1facbad4c011417e4ccebf770ecb76d4a6b0438c", + "language": "JavaScript", + "lines": 143, + "truncated": false, + "block": 1, + "row": 1274 + }, + { + "path": "static/admin/js/SelectBox.js", + "sha256": "6f8dac195a9a083aa5af489b16266eb3d15bad4c1e45c283ff2eb51c301d42e7", + "language": "JavaScript", + "lines": 116, + "truncated": false, + "block": 1, + "row": 1276 + }, + { + "path": "static/admin/js/SelectFilter2.js", + "sha256": "09df166168fba35b4cff6c1db97021e4902dae67671abf958afd70384d8b2984", + "language": "JavaScript", + "lines": 283, + "truncated": false, + "block": 1, + "row": 1463 + }, + { + "path": "static/admin/js/actions.js", + "sha256": "f749ceea8efbe786b6c3c6cd64ead2ec4a04a21fcc6449c8389cc98e2d734e5f", + "language": "JavaScript", + "lines": 201, + "truncated": false, + "block": 1, + "row": 1385 + }, + { + "path": "static/admin/js/admin/DateTimeShortcuts.js", + "sha256": "af2261b4cf523747cc75f9e157f9b61efda973a6bd074669737ee8719f36ffed", + "language": "JavaScript", + "lines": 408, + "truncated": false, + "block": 1, + "row": 1481 + }, + { + "path": "static/admin/js/admin/RelatedObjectLookups.js", + "sha256": "723e530b6f72f8191a8f06831de8d666f1ddfc11c300a26b9a630cb424a9eb12", + "language": "JavaScript", + "lines": 238, + "truncated": false, + "block": 1, + "row": 1412 + }, + { + "path": "static/admin/js/autocomplete.js", + "sha256": "380a924e21d99d3599cc9284bce9be675b5d0252e33d65fd8caa589261f43b3a", + "language": "JavaScript", + "lines": 33, + "truncated": false, + "block": 1, + "row": 888 + }, + { + "path": "static/admin/js/calendar.js", + "sha256": "bec62343836fe8b3e9a8c54c864a3c9a7b2fe94e445e493984e1e19a40b99bb8", + "language": "JavaScript", + "lines": 221, + "truncated": false, + "block": 1, + "row": 1399 + }, + { + "path": "static/admin/js/cancel.js", + "sha256": "50465dbef5aee6ce191f5ea515fc5af143e05972778bc56c78ae4b730d8aade8", + "language": "JavaScript", + "lines": 29, + "truncated": false, + "block": 1, + "row": 814 + }, + { + "path": "static/admin/js/change_form.js", + "sha256": "cce4de3910aad62f575d5fec6920410ce5dba2ee54b59bf1605a553eac50d364", + "language": "JavaScript", + "lines": 16, + "truncated": false, + "block": 1, + "row": 715 + }, + { + "path": "static/admin/js/collapse.js", + "sha256": "50e34152e787c2c9b948c946d147e9e2696a760bbb5068a653aa6c2b3a716ee1", + "language": "JavaScript", + "lines": 43, + "truncated": false, + "block": 1, + "row": 1027 + }, + { + "path": "static/admin/js/core.js", + "sha256": "637b6608f8df530bc33dda0070ed4682946adf79a28fcdbad0a3d80b524e51e5", + "language": "JavaScript", + "lines": 170, + "truncated": false, + "block": 1, + "row": 1312 + }, + { + "path": "static/admin/js/filters.js", + "sha256": "4fe265aea64405259b885c3f7b997190cca4900096a965ddff0332f9bdd39da1", + "language": "JavaScript", + "lines": 30, + "truncated": false, + "block": 1, + "row": 856 + }, + { + "path": "static/admin/js/inlines.js", + "sha256": "c9607e292c3f699995669222b4a75eee29b28006b7e8b05daa805f07b953bc94", + "language": "JavaScript", + "lines": 359, + "truncated": false, + "block": 1, + "row": 1467 + }, + { + "path": "static/admin/js/jquery.init.js", + "sha256": "b8cfca7fb10e04c8a97029ae4076f2b9b424c9c95e4960c24bcf9cdd67af156d", + "language": "JavaScript", + "lines": 8, + "truncated": false, + "block": 1, + "row": 635 + }, + { + "path": "static/admin/js/nav_sidebar.js", + "sha256": "d71cd5f7947719aa90f79dec56690b22e649af314da0324c1c1ab041e3e9ebe4", + "language": "JavaScript", + "lines": 79, + "truncated": false, + "block": 1, + "row": 1174 + }, + { + "path": "static/admin/js/popup_response.js", + "sha256": "1f8a691b5e237ebc41d57179c59a79492f0f6a962e628bb91fbbb06231ddede2", + "language": "JavaScript", + "lines": 16, + "truncated": false, + "block": 1, + "row": 700 + }, + { + "path": "static/admin/js/prepopulate.js", + "sha256": "518916ac734ad7e396a756b921665d834b9d7e8fdd711fa32929f9025c71aa05", + "language": "JavaScript", + "lines": 43, + "truncated": false, + "block": 1, + "row": 983 + }, + { + "path": "static/admin/js/prepopulate_init.js", + "sha256": "98920f0209fc4078e2feb4aa3ba58a35111ba640882c5ae344208e435fbd4a84", + "language": "JavaScript", + "lines": 15, + "truncated": false, + "block": 1, + "row": 707 + }, + { + "path": "static/admin/js/theme.js", + "sha256": "cc18a2d09118187c06dcf8b20a380b989def49251ec1bed294f2b306823b8506", + "language": "JavaScript", + "lines": 56, + "truncated": false, + "block": 1, + "row": 1049 + }, + { + "path": "static/admin/js/urlify.js", + "sha256": "f280b805cc6df28258e2ecbd3b83633f0b39957cc391d7f02365e8dccc69053a", + "language": "JavaScript", + "lines": 169, + "truncated": false, + "block": 1, + "row": 1386 + }, + { + "path": "static/admin/js/vendor/jquery/jquery.js", + "sha256": "341e6fece2b129a5fe8a3c1c15976d02064420452ce7ad8df021e2078b51dac2", + "language": "JavaScript", + "lines": 7350, + "truncated": true, + "block": 1, + "row": 1556 + }, + { + "path": "static/admin/js/vendor/jquery/jquery.min.js", + "sha256": "a0fe8723dcf55da64d06b25446d0a8513e52527c45afcb37073465f9c6f352af", + "language": "JavaScript", + "lines": 2, + "truncated": false, + "block": 1, + "row": 1545 + }, + { + "path": "static/admin/js/vendor/select2/i18n/af.js", + "sha256": "229237ba8d7d7e8efb8ccb4de51de97a83f43ab88dfa741f3d8d89e1fb9f77c8", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 803 + }, + { + "path": "static/admin/js/vendor/select2/i18n/ar.js", + "sha256": "cf1437a5e4a76d521fac7d4d763c780eb1c3b266e9aaeea67deca555614ce666", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 824 + }, + { + "path": "static/admin/js/vendor/select2/i18n/az.js", + "sha256": "37f294edfb688dfd8782f2519693fc2aa1ba84a21baa28183772b4607fdcb6e4", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 744 + }, + { + "path": "static/admin/js/vendor/select2/i18n/bg.js", + "sha256": "e59e889479ae93fe8875974056f7628179e58fb20e68a5ed723b88d27d059984", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 853 + }, + { + "path": "static/admin/js/vendor/select2/i18n/bn.js", + "sha256": "c1d41b81ac59e3b4f21a5c2fb28ec63a3a664d750a696cef554affa0245e9841", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 938 + }, + { + "path": "static/admin/js/vendor/select2/i18n/bs.js", + "sha256": "839ea4592bbd471ca1feb6ab2d20daffc9eb76a2f9d49a996a2e10431db48f04", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 851 + }, + { + "path": "static/admin/js/vendor/select2/i18n/ca.js", + "sha256": "0d2cb2017254234c13a7f4db1612cd1ab82f811b0659e57721a7f16141818203", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 819 + }, + { + "path": "static/admin/js/vendor/select2/i18n/cs.js", + "sha256": "b7ff0e5958ba632dbd29a6eab3f975b0cd924ab8d4020653c1b4d7fe6d0c08bf", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 939 + }, + { + "path": "static/admin/js/vendor/select2/i18n/da.js", + "sha256": "b45da6bf315849660e537624b65dc6f77a4291ff95f60a270b193b85c039275a", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 791 + }, + { + "path": "static/admin/js/vendor/select2/i18n/de.js", + "sha256": "e5bb297dc8a1329f325c3c1f72abc2fe75774136ed06e403991ddced43d0b45c", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 805 + }, + { + "path": "static/admin/js/vendor/select2/i18n/dsb.js", + "sha256": "2ad3f6c4da0fef9a169e86d4ad2ec4a7f04e14fcdc30d0edd30c8f9e46c817f4", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 868 + }, + { + "path": "static/admin/js/vendor/select2/i18n/el.js", + "sha256": "21dbc3f1e63f2a95fd7dd1ef95ddce32f41f62c9daa098c37959206c87a67e7f", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 912 + }, + { + "path": "static/admin/js/vendor/select2/i18n/en.js", + "sha256": "0bae803be28e5cdb97116c21c1f8d80456b7806708cec3c51d0019f6a4a1dc6a", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 796 + }, + { + "path": "static/admin/js/vendor/select2/i18n/es.js", + "sha256": "22165a232f2e7d376e3b6faf06b8afb303028e53e4eefae4e0ff35a43e81d123", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 831 + }, + { + "path": "static/admin/js/vendor/select2/i18n/et.js", + "sha256": "2e02e074e90a8dceb7b2fc4fd546bb034cded4be96aefd17ea7a7ef22443e73c", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 774 + }, + { + "path": "static/admin/js/vendor/select2/i18n/eu.js", + "sha256": "acb9ad3fb6c0fdab643488fcd65feb89333b7e2e425f156b1411c5c9d74ef87c", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 806 + }, + { + "path": "static/admin/js/vendor/select2/i18n/fa.js", + "sha256": "7ea66413d7bcb6ddab67b3ab0c63e23ac4cd763dd2dabd028db75d55404378c0", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 871 + }, + { + "path": "static/admin/js/vendor/select2/i18n/fi.js", + "sha256": "2951a2ae118635e7bf888a4c18b5f91331ff52435ef8538f0bfd38f381be410d", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 776 + }, + { + "path": "static/admin/js/vendor/select2/i18n/fr.js", + "sha256": "6a3d2adab749378ec144173d2eabec83192e3ce71601b66c5055256e0bb0758d", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 833 + }, + { + "path": "static/admin/js/vendor/select2/i18n/gl.js", + "sha256": "1d225a7c8f39c8aa785b38c53d3e7fdde67ff9740360fcf37f80569aeeae5c79", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 832 + }, + { + "path": "static/admin/js/vendor/select2/i18n/he.js", + "sha256": "0c83d1287c343640ee52d2cd19d4e76197280a2377bacb4763e50c9b0df857fb", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 860 + }, + { + "path": "static/admin/js/vendor/select2/i18n/hi.js", + "sha256": "9ba66a88a67f8f3c33545802f2f9188b0cb8947e5f244315f8b4cf54ed96bb8d", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 910 + }, + { + "path": "static/admin/js/vendor/select2/i18n/hr.js", + "sha256": "35c9539434e23455f5cb45b52e58f5d3e648a1751877bbc35eac9e509eefdc1e", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 797 + }, + { + "path": "static/admin/js/vendor/select2/i18n/hsb.js", + "sha256": "1532eccdcac669e9535bae96579d2efeb4ba1d5d1267143a561a62dad9e00ba3", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 870 + }, + { + "path": "static/admin/js/vendor/select2/i18n/hu.js", + "sha256": "dcf7549344a91d8f87fa1eb6c289b0e00cb244cba394673afe8c56f8bd56c8eb", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 793 + }, + { + "path": "static/admin/js/vendor/select2/i18n/hy.js", + "sha256": "04b8747e7b6bc2dc0dc254288b02e4750395c8d5c77664692f6f29f96e45b038", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 875 + }, + { + "path": "static/admin/js/vendor/select2/i18n/id.js", + "sha256": "7c627ef80c3bd0fa739371202e317557f42fa83daafee7d78e740823266a6207", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 760 + }, + { + "path": "static/admin/js/vendor/select2/i18n/is.js", + "sha256": "827d1d748a939c95f8c24fad582e6014e449b357648081fd30ec0b96306e40ad", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 780 + }, + { + "path": "static/admin/js/vendor/select2/i18n/it.js", + "sha256": "906c6d6a9c214458f7bbf22163fef359984a811e42ad99a66ac4f9c3e6a85d13", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 818 + }, + { + "path": "static/admin/js/vendor/select2/i18n/ja.js", + "sha256": "b59e2ca9dc7f4847096e25b9f9ca070d5f0556612525103767cdb61051e48cb3", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 801 + }, + { + "path": "static/admin/js/vendor/select2/i18n/ka.js", + "sha256": "0c7e95ae755d47c497ea4b28dadcea9c9aacdf6b82a41372bcff4ac6cdecb232", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 918 + }, + { + "path": "static/admin/js/vendor/select2/i18n/km.js", + "sha256": "c7d8728de9e77358b4a1e62b1541d09d81da917a6fed60fb31217e73d01a4e38", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 892 + }, + { + "path": "static/admin/js/vendor/select2/i18n/ko.js", + "sha256": "226981f6fee0d9928498f15441e5eb2fbdb75448db8845b761e9717aa1c48077", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 799 + }, + { + "path": "static/admin/js/vendor/select2/i18n/lt.js", + "sha256": "653fb8e626d5c1d5a74f2a3e4eab2a5b6363229f73c38c6ce52a3bf0a31bfecf", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 844 + }, + { + "path": "static/admin/js/vendor/select2/i18n/lv.js", + "sha256": "847a442b87984a8263fdfbc0db097c412b8996e37187e4efa7a5199be65869e1", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 820 + }, + { + "path": "static/admin/js/vendor/select2/i18n/mk.js", + "sha256": "3d2a71ae70692f8492b3d4dbd2a7560fbba6508c88a11d95d5fa6a450bc25dc0", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 880 + }, + { + "path": "static/admin/js/vendor/select2/i18n/ms.js", + "sha256": "342cf8467b642597fc6030c2d53141bcafa7927f83f9c18dcbbc2886aa9a403e", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 781 + }, + { + "path": "static/admin/js/vendor/select2/i18n/nb.js", + "sha256": "79db8a086efa2778883eb51e9020c2abbe35ae71b8c43ed353713b2e26fbb0f1", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 766 + }, + { + "path": "static/admin/js/vendor/select2/i18n/ne.js", + "sha256": "4108c33d013a1832974b9731ab62518e4dcc183be38372337b1ef5661a276e3f", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 953 + }, + { + "path": "static/admin/js/vendor/select2/i18n/nl.js", + "sha256": "25cb4b7d3a4b4395055edc809a06c2bd23d4b56d1fcb5984ee835870c23dd1b2", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 822 + }, + { + "path": "static/admin/js/vendor/select2/i18n/pl.js", + "sha256": "ea012e2989c975ff1c6cf111b30fa6b5d720741c9426e2dfd50507d1a49a8cca", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 846 + }, + { + "path": "static/admin/js/vendor/select2/i18n/ps.js", + "sha256": "e09e2c66d49abf1af5bd97719a7b9bd89d07d2aaf54bc5a736c4de85f75fab83", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 886 + }, + { + "path": "static/admin/js/vendor/select2/i18n/pt-BR.js", + "sha256": "d0315ed47bbd7c40d25e0a633ce42b03a12ad2b19bd793516ec1a1d54e2f12bd", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 810 + }, + { + "path": "static/admin/js/vendor/select2/i18n/pt.js", + "sha256": "2f98eacfccdce4117cba4ae1a48dafbc6acd477e17ef8f3675c917f8852e5290", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 811 + }, + { + "path": "static/admin/js/vendor/select2/i18n/ro.js", + "sha256": "01a75be8b574bb62f69823a0c97d9c619eb1239b034fd388dd5ec7c2eb9e8af3", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 841 + }, + { + "path": "static/admin/js/vendor/select2/i18n/ru.js", + "sha256": "6d5e9e995084f656342f36d537ced628000014b513de42aa1339fae35a49dbda", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 906 + }, + { + "path": "static/admin/js/vendor/select2/i18n/sk.js", + "sha256": "3276d470fea9227b81cd35bf2ffc265d8f203cb18239c2b2cd01ed845908999a", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 943 + }, + { + "path": "static/admin/js/vendor/select2/i18n/sl.js", + "sha256": "2cf20ac29f60a7f59c51ce14695b7f7324a534be7f9667d996dd1b82dc279059", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 835 + }, + { + "path": "static/admin/js/vendor/select2/i18n/sq.js", + "sha256": "a08c492d82ed2b4bc6da0dece63b062e7e251ee0e04a877160058bd01c87447a", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 821 + }, + { + "path": "static/admin/js/vendor/select2/i18n/sr-Cyrl.js", + "sha256": "0684f629d89c7991a0c61112473dd6d89ffb08562a5b2672a2fd9892d528ff6c", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 899 + }, + { + "path": "static/admin/js/vendor/select2/i18n/sr.js", + "sha256": "ec410b617c1bd2d212b2ebcbe9ea2bc734ef88c2bea1e752bd9bc4642325a065", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 858 + }, + { + "path": "static/admin/js/vendor/select2/i18n/sv.js", + "sha256": "73a9ea5268ad2ace3fe809580ef8827ba1ea2f2387aa8b7622bbc94468e3d491", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 769 + }, + { + "path": "static/admin/js/vendor/select2/i18n/th.js", + "sha256": "b1a0cf2e4fb676ae5fb4a0af5b5c1d76424e83e99703e194a0f3d53a5499ac86", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 889 + }, + { + "path": "static/admin/js/vendor/select2/i18n/tk.js", + "sha256": "99410695bfbd9d01efcdc4d823ed648ec07b26c3d11a92f159b8eb27c511b615", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 762 + }, + { + "path": "static/admin/js/vendor/select2/i18n/tr.js", + "sha256": "743cfc892a74eef6f1f6072222acf9eb099cd932c78f9bfca3a7acef9bf39995", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 764 + }, + { + "path": "static/admin/js/vendor/select2/i18n/uk.js", + "sha256": "322c61143bdd45d6bec23f938eb374d7cb3b47b137e1a421463cf86dac6b74ac", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 905 + }, + { + "path": "static/admin/js/vendor/select2/i18n/vi.js", + "sha256": "9b04dec92b14020aaefc803a86f17333285c488335cc684d60aabc1bb5ffb693", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 771 + }, + { + "path": "static/admin/js/vendor/select2/i18n/zh-CN.js", + "sha256": "a2501dbcf439aac37d219bb100a80355033e6e57b15275930d35d4b62a2bca02", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 761 + }, + { + "path": "static/admin/js/vendor/select2/i18n/zh-TW.js", + "sha256": "0e70c11bdcb004e7f155bd955e0ef5c4147fb4408f031c3b40b859397889e1fa", + "language": "JavaScript", + "lines": 3, + "truncated": false, + "block": 1, + "row": 740 + }, + { + "path": "static/admin/js/vendor/select2/select2.full.js", + "sha256": "ba0664111e4e0041b30b0c1bff832f841284e46be67344b9f4c2a7f9da2865a2", + "language": "JavaScript", + "lines": 6820, + "truncated": false, + "block": 1, + "row": 1549 + }, + { + "path": "static/admin/js/vendor/select2/select2.full.min.js", + "sha256": "5c6fdab80cb86a279695dccc226a1fac50e2c922bea70242edaa28f52b7bad2d", + "language": "JavaScript", + "lines": 2, + "truncated": false, + "block": 1, + "row": 1541 + }, + { + "path": "static/admin/js/vendor/xregexp/xregexp.js", + "sha256": "bbeeaf80c9e7663ccfdf69901eaa5ff303997209c9e959a372568879b0ff63ef", + "language": "JavaScript", + "lines": 3821, + "truncated": true, + "block": 1, + "row": 1562 + }, + { + "path": "static/admin/js/vendor/xregexp/xregexp.min.js", + "sha256": "7b68837c6e95d6c7c6501f768b9c8da906a6b0c09cf009f4485ce8a37bdbca58", + "language": "JavaScript", + "lines": 160, + "truncated": false, + "block": 1, + "row": 1547 + }, + { + "path": "threshold.ipynb", + "sha256": "1b92949f08b4da5c1d574479de407eaa21670fe182135a9aa744c6066d93b5a6", + "language": "Jupyter", + "lines": 136, + "truncated": false, + "block": 1, + "row": 1774 + } + ] +} \ No newline at end of file diff --git a/manifests/98/github.com__gbarisano__alps.json b/manifests/98/github.com__gbarisano__alps.json new file mode 100644 index 0000000000000000000000000000000000000000..ef3cd130ceae7cafdf7d0d8ab328a48be78d09f3 --- /dev/null +++ b/manifests/98/github.com__gbarisano__alps.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/gbarisano/alps", + "url": "https://github.com/gbarisano/alps/", + "host": "github.com", + "commit": "e6f58e7c1b882a799b613e91fe15bab940dc4cd3", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "aab6059acf6cd89d62e76d09087277174361b23295a023f92ed3c1399b3267cd", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2149 + }, + { + "path": "README.md", + "sha256": "14b5b84eddbfc06ea0398eb12c448bc2a230502d4e2b812fab7590ea57ea1294", + "language": "Text", + "lines": 170, + "truncated": false, + "block": 1, + "row": 11993 + }, + { + "path": "alps.sh", + "sha256": "67dd66075c89ea59555a8de53bae18f8f2273249e927cf455958fcc4e3826633", + "language": "Shell", + "lines": 757, + "truncated": false, + "block": 1, + "row": 11757 + } + ] +} \ No newline at end of file diff --git a/manifests/99/github.com__james-cole__brainager.json b/manifests/99/github.com__james-cole__brainager.json new file mode 100644 index 0000000000000000000000000000000000000000..a2caec003bccb2a6ea71deaa6a759962c5569343 --- /dev/null +++ b/manifests/99/github.com__james-cole__brainager.json @@ -0,0 +1,93 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/james-cole/brainager", + "url": "https://github.com/james-cole/brainageR", + "host": "github.com", + "commit": "f9444605527337b07b9a8eb2f6c8c81261aa8b61", + "license": "LGPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "da7eabb7bafdf7d3ae5e9f223aa5bdc1eece45ac569dc21b3b037520b4464768", + "language": "License", + "lines": 165, + "truncated": false, + "block": 1, + "row": 2211 + }, + { + "path": "README.md", + "sha256": "395dd380215ca928940c39bbf4808283cf9e06baa85b0fd075abd081a4a18903", + "language": "Text", + "lines": 153, + "truncated": false, + "block": 1, + "row": 11965 + }, + { + "path": "collate_brain_ages.sh", + "sha256": "9e892fb1a38ea8e9fc991ac5d9b500731d69bdb271f6828d66257bf2214674fd", + "language": "Shell", + "lines": 23, + "truncated": false, + "block": 1, + "row": 11407 + }, + { + "path": "generate_submit_scripts.sh", + "sha256": "ca3b133b5770d85205fb445b47bd9abc3c9803ff65f32fa0ae60cb4f04bd41a6", + "language": "Shell", + "lines": 13, + "truncated": false, + "block": 1, + "row": 11181 + }, + { + "path": "predict_new_data_gm_wm_csf.R", + "sha256": "507ccd08b4fa4a84abf4aadd56f62803fcc84ea15499c43382a04199e78c4ff1", + "language": "R", + "lines": 74, + "truncated": false, + "block": 1, + "row": 10181 + }, + { + "path": "sge_submit_template.sh", + "sha256": "c62edfe7085aa506d211aea2612e47bfcf1a662eeb872dab6c03ff09f368b155", + "language": "Shell", + "lines": 18, + "truncated": false, + "block": 1, + "row": 11160 + }, + { + "path": "slurm_submit_template.sh", + "sha256": "ccf89102c438fc9723905632e651e8ded41e74739a41df7ee86d19daaef2352a", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11155 + }, + { + "path": "spm_preprocess_brainageR.m", + "sha256": "bad6ecbeb008afe0e8ed372260d672fa6d9a27c0f461b4af310564f0ec55f8bf", + "language": "MATLAB", + "lines": 120, + "truncated": false, + "block": 1, + "row": 3907 + }, + { + "path": "submit_template.sh", + "sha256": "ccf89102c438fc9723905632e651e8ded41e74739a41df7ee86d19daaef2352a", + "language": "Shell", + "lines": 14, + "truncated": false, + "block": 1, + "row": 11155 + } + ] +} \ No newline at end of file diff --git a/manifests/99/github.com__juniper-cola__bio_ssf.json b/manifests/99/github.com__juniper-cola__bio_ssf.json new file mode 100644 index 0000000000000000000000000000000000000000..dca5b78186f103f95faa98def59e8aefe5f74380 --- /dev/null +++ b/manifests/99/github.com__juniper-cola__bio_ssf.json @@ -0,0 +1,138 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/juniper-cola/bio_ssf", + "url": "https://github.com/Juniper-cola/BIO_SSF", + "host": "github.com", + "commit": "7a7603103f1c9fdc0140ef4aa3eaf630aaf589d2", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Contrast.py", + "sha256": "e0964de4526fe43236df9e269308f86f0e8bd231b044f82dab5ec036798804ca", + "language": "Python", + "lines": 79, + "truncated": false, + "block": 1, + "row": 6814 + }, + { + "path": "LICENSE", + "sha256": "866371508a36cb59edfcc4eb5314652e256a1d167b7d1abc88dd65478ef81705", + "language": "License", + "lines": 23, + "truncated": false, + "block": 1, + "row": 2184 + }, + { + "path": "Metapath_Augmentation/learner.py", + "sha256": "d3eda2a3013cf3d2f3360d72108501deb062cb12fba73ff4c991fbfb83cae950", + "language": "Python", + "lines": 671, + "truncated": false, + "block": 1, + "row": 9503 + }, + { + "path": "Metapath_Augmentation/path_aug_model.py", + "sha256": "1b29d5779d24395789a85ae126311f1c68eddcc16a2fe37bdc7981649c58ac2f", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 1, + "row": 7251 + }, + { + "path": "Metapath_Augmentation/simulator.py", + "sha256": "a5d51b96b04084fd01266a881e508acee915571430293d46c98dc22291b767ac", + "language": "Python", + "lines": 151, + "truncated": false, + "block": 1, + "row": 7389 + }, + { + "path": "README.md", + "sha256": "6ccfeb550b6cb642d196845920a8f1536fd1e2ed4bc26da8adc8b1577efa0071", + "language": "Text", + "lines": 45, + "truncated": false, + "block": 1, + "row": 11843 + }, + { + "path": "Structural_Augmentation/struc_aug.py", + "sha256": "e6af4dd70fe743e6c829d9cd1df3d4c6f2b4478f1bf4f9a4b9a146db72b12cfd", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 1, + "row": 6385 + }, + { + "path": "data_preprocess.py", + "sha256": "c0b2398c00df7408ad3d053fd4a091ca2065aec4016e7458007dc5bd5accba0a", + "language": "Python", + "lines": 337, + "truncated": false, + "block": 1, + "row": 8701 + }, + { + "path": "freq_encoder.py", + "sha256": "aecf5e5182f96688790c78e529bd7a1c5d768fa4001d11727aa484cbea0b4e67", + "language": "Python", + "lines": 304, + "truncated": false, + "block": 1, + "row": 8716 + }, + { + "path": "metric.py", + "sha256": "5f91c7c41eb629d9ddc7535d0b18813424fc77267ab61437c2dbde944e21becb", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 1, + "row": 5555 + }, + { + "path": "model.py", + "sha256": "4ffb5c3695622daabf6cf62fc5aa8d2b495b38fe02589a701b28bbaf5b81151c", + "language": "Python", + "lines": 341, + "truncated": false, + "block": 1, + "row": 8911 + }, + { + "path": "pos_contrast.py", + "sha256": "a313b6fc0627db3af87e1acaf83e52389e212f39cc0644b3f9e7b0aa5b34926e", + "language": "Python", + "lines": 85, + "truncated": false, + "block": 1, + "row": 6623 + }, + { + "path": "train_DDA.py", + "sha256": "0a577ba0f570ffe5be5de7a393006afbaabb00ba57f393eb7eebd5d65e5a5c07", + "language": "Python", + "lines": 286, + "truncated": false, + "block": 1, + "row": 9008 + }, + { + "path": "wave_evolution.py", + "sha256": "adb10d8b745dc4e56a8b2e2fee7b3c327795e06d6fd6724272231bbc292b2e3e", + "language": "Python", + "lines": 222, + "truncated": false, + "block": 1, + "row": 7977 + } + ] +} \ No newline at end of file diff --git a/manifests/99/github.com__yuyasanaki__nmj-analysis.json b/manifests/99/github.com__yuyasanaki__nmj-analysis.json new file mode 100644 index 0000000000000000000000000000000000000000..0819ad6158c687cbcc34944dea8c355653961fbe --- /dev/null +++ b/manifests/99/github.com__yuyasanaki__nmj-analysis.json @@ -0,0 +1,111 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/yuyasanaki/nmj-analysis", + "url": "https://github.com/YuyaSanaki/NMJ-analysis", + "host": "github.com", + "commit": "4c8fd8aa09233c648ea0ed8eb1586da001c2a8c3", + "license": "Apache-2.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "BTX.py", + "sha256": "9caa064325db0d39a83ec10805be02af6981c94e7fd5d867425bf9c615b987a7", + "language": "Python", + "lines": 302, + "truncated": false, + "block": 1, + "row": 8877 + }, + { + "path": "BTX_batch.py", + "sha256": "f8ba081b623ce32eada36c960d97094e557d78daf3f761c7eb12fd6bf55b8e23", + "language": "Python", + "lines": 859, + "truncated": false, + "block": 1, + "row": 9721 + }, + { + "path": "LICENSE", + "sha256": "cef816e6cbf30a3d0001cfe9d644c029cd74bee13861a603e696eb41aeecbffe", + "language": "License", + "lines": 190, + "truncated": false, + "block": 1, + "row": 2214 + }, + { + "path": "README.md", + "sha256": "5c8ea392dc231a6dfe044bd85a637f89b458d9afdabdf74ac2b3dbb96c9b54f8", + "language": "Text", + "lines": 430, + "truncated": false, + "block": 1, + "row": 11995 + }, + { + "path": "nmj_image_analysis.py", + "sha256": "51100d1b866a2db2e11ef8fc5dbf9ab5abd81577d4e88b243171925d790fa921", + "language": "Python", + "lines": 631, + "truncated": false, + "block": 1, + "row": 9453 + }, + { + "path": "nmj_master_dashboard.py", + "sha256": "3a78b85a0be6d6f4cbec83f445d449dbcfea4d2f67f178eccdc6a51e23f6d295", + "language": "Python", + "lines": 3361, + "truncated": false, + "block": 1, + "row": 9871 + }, + { + "path": "nmj_run_output.py", + "sha256": "9c803d0e72bff22c9b4fde9c71420b41f998c3ea255f85d59b017afcbe2d0d3c", + "language": "Python", + "lines": 254, + "truncated": false, + "block": 1, + "row": 8383 + }, + { + "path": "regenerate_all_folders_panel_pdfs.py", + "sha256": "e171c3426d01749a105410bf6bdd064eb5f42e25d9cd66b7319b3a18d3a8eab6", + "language": "Python", + "lines": 177, + "truncated": false, + "block": 1, + "row": 7901 + }, + { + "path": "regenerate_per_image_nmj_plots.py", + "sha256": "ec4c8d0d5c187c8bd6515eb27ed82b58ab221700858d4c5f61d5eb6bfe09aa34", + "language": "Python", + "lines": 130, + "truncated": false, + "block": 1, + "row": 7446 + }, + { + "path": "scripts/lock_requirements.sh", + "sha256": "5c5d8e6cc26ecdc6ba9f6090dfe03f2d826903937ec05e7aaca216a464e5e3d9", + "language": "Shell", + "lines": 20, + "truncated": false, + "block": 1, + "row": 11375 + }, + { + "path": "scripts/test_run_output.py", + "sha256": "608314fd9a203af9133f2830794d7609660371bbcbd3b78cec57e486db5ec1ff", + "language": "Python", + "lines": 561, + "truncated": false, + "block": 1, + "row": 9422 + } + ] +} \ No newline at end of file diff --git a/manifests/99/zenodo__21133348.json b/manifests/99/zenodo__21133348.json new file mode 100644 index 0000000000000000000000000000000000000000..78b901fb1f07d12bd39d98af258f9b8ad0b7244c --- /dev/null +++ b/manifests/99/zenodo__21133348.json @@ -0,0 +1,273 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "zenodo:21133348", + "url": "10.5281/zenodo.21133348", + "host": "zenodo.org", + "commit": "", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "9f1abe28a25b5f6f95c58a81a647de3fa72ff6388d228c59bddd079255709989", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1129 + }, + { + "path": "README.md", + "sha256": "298efd149fd3f98f8531585a5c96244c0d1db9c656bef7409f37e4724f88ef7a", + "language": "Text", + "lines": 176, + "truncated": false, + "block": 2, + "row": 2655 + }, + { + "path": "baselines/burgers_FD/burgers_rhs.m", + "sha256": "382c5fd79c4c2f92f9a6ad6bfe0c3ff083d4f9e3f9e7f540ff3eb278ba7d5789", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 2, + "row": 1314 + }, + { + "path": "baselines/burgers_FD/burgers_rhs_forward.m", + "sha256": "182d69e9bc2103629b38f4f24cbbcc83263cb9c157da9abf885594c37c1cb39a", + "language": "MATLAB", + "lines": 55, + "truncated": false, + "block": 2, + "row": 1327 + }, + { + "path": "baselines/burgers_FD/burgers_rhs_forward_2.m", + "sha256": "03e9eb3c9cd4ecec09fccb2d562568a94f9f8336212d092c3a5ee85bcc14c76b", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 2, + "row": 1343 + }, + { + "path": "baselines/burgers_FD/main.m", + "sha256": "9dd6d06c9a59e966c853a6e74d139a0fcde43c92d7bd9e4e8cd8816a82eb7f97", + "language": "MATLAB", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1175 + }, + { + "path": "baselines/nagumo_FD/main_nagumo.m", + "sha256": "146eb61321cafdf5d62ef2eaf4acc5a49acb516c0e69a9d67e3ed6bb2d060a79", + "language": "MATLAB", + "lines": 24, + "truncated": false, + "block": 2, + "row": 1195 + }, + { + "path": "baselines/nagumo_FD/nagumo_implicit.m", + "sha256": "e2e020eb91d0024e657ada9c9deed4577f2080ff19f6a96a5f67c626ae91b0d1", + "language": "MATLAB", + "lines": 45, + "truncated": false, + "block": 2, + "row": 1275 + }, + { + "path": "baselines/nagumo_FD/nagumo_rhs.m", + "sha256": "41a895b839cc8d987d113dedfc4fc82c4d55307c6dbdc65dfb6e964586604331", + "language": "MATLAB", + "lines": 19, + "truncated": false, + "block": 2, + "row": 1187 + }, + { + "path": "baselines/porous_medium_axisymmetric_FD/main.m", + "sha256": "e0e0a532b7d978c2cf15e3d6c085d955e9a63b021abdbffbdd841cad8d728e10", + "language": "MATLAB", + "lines": 22, + "truncated": false, + "block": 2, + "row": 1180 + }, + { + "path": "baselines/porous_medium_axisymmetric_FD/pme2d_rhs.m", + "sha256": "be750086bd37357f3a817d0947bc02fb25e90e232d6218c2f842cb0d5b391efc", + "language": "MATLAB", + "lines": 51, + "truncated": false, + "block": 2, + "row": 1300 + }, + { + "path": "case_studies/01_nagumo_forward/main.m", + "sha256": "577a91644893e71536d19f08d4ad96846383eea5a9f3404d1ae4b9025229a8f0", + "language": "MATLAB", + "lines": 103, + "truncated": false, + "block": 2, + "row": 1361 + }, + { + "path": "case_studies/01_nagumo_forward/modelLoss.m", + "sha256": "cc9dc188b1580654c9a57c4ba4b8756395d3f6f983048974f0fe1c04baa0d51f", + "language": "MATLAB", + "lines": 53, + "truncated": false, + "block": 2, + "row": 1298 + }, + { + "path": "case_studies/01_nagumo_inverse/main.m", + "sha256": "facae415725f6c266f213239ae16a4712ad888a6e24e359bd576f7d43130dbf2", + "language": "MATLAB", + "lines": 112, + "truncated": false, + "block": 2, + "row": 1371 + }, + { + "path": "case_studies/01_nagumo_inverse/modelLoss.m", + "sha256": "e460fc3cf3ce543c095c36680c40b8a0ff573b7d575b685e3d8175eb12303033", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 2, + "row": 1320 + }, + { + "path": "case_studies/01_nagumo_inverse/vanilla_PINN_baseline/main.m", + "sha256": "56d70acd6e2dd41aa5fe1fb768af84eccd5af7aa05c1431d7d7435b944ccf5fc", + "language": "MATLAB", + "lines": 79, + "truncated": false, + "block": 2, + "row": 1310 + }, + { + "path": "case_studies/01_nagumo_inverse/vanilla_PINN_baseline/modelLoss.m", + "sha256": "d1dfdd6ca7ef98437cdb8a3932a767632c2460f45203b8327e12e9216ff8c865", + "language": "MATLAB", + "lines": 43, + "truncated": false, + "block": 2, + "row": 1240 + }, + { + "path": "case_studies/02_diffusion_2D/main.m", + "sha256": "6ad6b87f07295df842a1db170d139da3b501878dbf163c2b9e706c61312b733b", + "language": "MATLAB", + "lines": 121, + "truncated": false, + "block": 2, + "row": 1375 + }, + { + "path": "case_studies/02_diffusion_2D/modelLoss.m", + "sha256": "70ca8a9f686d722564b971da30ae1157b637fa396cd4bb410bdae8e85e228695", + "language": "MATLAB", + "lines": 74, + "truncated": false, + "block": 2, + "row": 1370 + }, + { + "path": "case_studies/03_porous_medium_2D/main.m", + "sha256": "a915edd5152677722464f2854fa312da879b241639fe3b9623997f84992beecc", + "language": "MATLAB", + "lines": 123, + "truncated": false, + "block": 2, + "row": 1383 + }, + { + "path": "case_studies/03_porous_medium_2D/modelLoss.m", + "sha256": "207079dc047a4e2878a7f689cd73737711f50786999573998e09bbf7fffe207c", + "language": "MATLAB", + "lines": 71, + "truncated": false, + "block": 2, + "row": 1362 + }, + { + "path": "case_studies/04_burgers/main.m", + "sha256": "22ac28d2c80a96d311f0c86ed36bec56a9aefb5b9954e85ca048cee8056d27af", + "language": "MATLAB", + "lines": 96, + "truncated": false, + "block": 2, + "row": 1346 + }, + { + "path": "case_studies/04_burgers/modelLoss.m", + "sha256": "57d93e83d9b6249b44006ece94473af735aabe2fe2deaad4be8ee7dd58f6be11", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 2, + "row": 1313 + }, + { + "path": "case_studies/05_gKdV_steady_blowup/main.m", + "sha256": "6344984fd222d26a37f49e63bb2d63c28dc453192a2499ad306835acd5b2f4ac", + "language": "MATLAB", + "lines": 73, + "truncated": false, + "block": 2, + "row": 1284 + }, + { + "path": "case_studies/05_gKdV_steady_blowup/modelLoss.m", + "sha256": "09a11fcd6bc9bb543ccb04b3d345ff1891c3ed0ec76076eef0bf19efe4181b09", + "language": "MATLAB", + "lines": 42, + "truncated": false, + "block": 2, + "row": 1256 + }, + { + "path": "supplementary/SI1_diffusion_1D/main.m", + "sha256": "8003b5b73c7730ca0b26bed2ffd53aff0e1e2c93a70bff7f18834f9bc0dc7475", + "language": "MATLAB", + "lines": 94, + "truncated": false, + "block": 2, + "row": 1340 + }, + { + "path": "supplementary/SI1_diffusion_1D/modelLoss.m", + "sha256": "d285b510da1f5d55bdc19b8093cfda0672f6a5f0a230a63df9ae023ceeb5a7c9", + "language": "MATLAB", + "lines": 59, + "truncated": false, + "block": 2, + "row": 1312 + }, + { + "path": "supplementary/SI2_porous_medium_axisymmetric/main.m", + "sha256": "33a2904e239e7c9b68dccd23c0e69f11c64f28cc4042ab6308b8fac2d99ecefd", + "language": "MATLAB", + "lines": 101, + "truncated": false, + "block": 2, + "row": 1356 + }, + { + "path": "supplementary/SI2_porous_medium_axisymmetric/modelLoss.m", + "sha256": "dc3099d72b547e118fba794a77a2162538d8889a1c06f8bb0df27fd02153655c", + "language": "MATLAB", + "lines": 52, + "truncated": false, + "block": 2, + "row": 1296 + } + ] +} \ No newline at end of file diff --git a/manifests/9a/github.com__dboeken__boeken_tau_aggregate_interactome.json b/manifests/9a/github.com__dboeken__boeken_tau_aggregate_interactome.json new file mode 100644 index 0000000000000000000000000000000000000000..3524c186da4a305babab4c5df0765655164e6a68 --- /dev/null +++ b/manifests/9a/github.com__dboeken__boeken_tau_aggregate_interactome.json @@ -0,0 +1,183 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/dboeken/boeken_tau_aggregate_interactome", + "url": "https://github.com/dboeken/Boeken_Tau_aggregate_interactome/tree/v1.0.0", + "host": "github.com", + "commit": "44a90a7dd6f13b813f20666faa896d156f765e32", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "e32e4210ee0d05350c72966f034780bb5915e5238021afc9fc0feacad65cd356", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2142 + }, + { + "path": "README.md", + "sha256": "870e61625ae83fd16774f07368eb47fa5f352f28c854ac6592c18fbc6d971d0c", + "language": "Text", + "lines": 24, + "truncated": false, + "block": 1, + "row": 11825 + }, + { + "path": "src/Colocalisation_analysis/1_initial_cleanup.py", + "sha256": "bf8127d7505393714620af8eec0c51b16615543816e1ecff58b7c298b2426406", + "language": "Python", + "lines": 66, + "truncated": false, + "block": 1, + "row": 6272 + }, + { + "path": "src/Colocalisation_analysis/2_count_spots.py", + "sha256": "7122be4b27cb38bf8ad7a6ba5b4eaf55ce8cec1fe88aefde3072e3cfd8343a8d", + "language": "Python", + "lines": 149, + "truncated": false, + "block": 1, + "row": 7509 + }, + { + "path": "src/Colocalisation_analysis/3_comparison.py", + "sha256": "18537c4e8cbf3b19acec2418787e5c929ce57ea07df654a811ffad09b797aaab", + "language": "Python", + "lines": 45, + "truncated": false, + "block": 1, + "row": 5956 + }, + { + "path": "src/Colocalisation_analysis/4_colocalisation.py", + "sha256": "d915511bfdbe101bf09f5ef0a347e7905d2cbdad782a5b4ea17dffcfcbf3dbea", + "language": "Python", + "lines": 158, + "truncated": false, + "block": 1, + "row": 8119 + }, + { + "path": "src/Proteomics_analysis/1_initial_cleanup.py", + "sha256": "c51153e8fd55b8eb7b4f256f11a2f14c975c196c8affc9ebd322e95a0290b854", + "language": "Python", + "lines": 164, + "truncated": false, + "block": 1, + "row": 8050 + }, + { + "path": "src/Proteomics_analysis/2_normalisation.py", + "sha256": "5d275b036424fd3757aae690d378f3e5b494bfc6ae0f48ff3676c6d273487e04", + "language": "Python", + "lines": 105, + "truncated": false, + "block": 1, + "row": 7315 + }, + { + "path": "src/Proteomics_analysis/3_ratio.py", + "sha256": "176581f4b17eb5db2a536eca7420763cda4a2778c7162cd1c8c0129c7c48b919", + "language": "Python", + "lines": 93, + "truncated": false, + "block": 1, + "row": 7176 + }, + { + "path": "src/Proteomics_analysis/analyse_go-enrichment.py", + "sha256": "d8455ba427957b2c011033119c36d6403111264095da050178f60401ee54872e", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 1, + "row": 5879 + }, + { + "path": "src/Proteomics_analysis/analyse_interactions.py", + "sha256": "c19cd8fe2bd15f39376fd02835962665366c9a666a04b13a12426d550a86ab93", + "language": "Python", + "lines": 40, + "truncated": false, + "block": 1, + "row": 5963 + }, + { + "path": "src/Proteomics_analysis/heatmap.py", + "sha256": "4a96fcbc3ebbcc27128f26edd965c0dae058f95ab3a7c19a5141b71cd94f2c74", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 1, + "row": 6525 + }, + { + "path": "src/Proteomics_analysis/plot_enrichment.py", + "sha256": "452a3988bfee7984ce22c8e2fb6b3e180a8b99f1c439ec0d3fadbd13a09d8833", + "language": "Python", + "lines": 167, + "truncated": false, + "block": 1, + "row": 7888 + }, + { + "path": "src/Proteomics_analysis/plot_ratios.py", + "sha256": "d54a48f644298c1afa9c721079c2abb2c4f8f127d34a059a9f0836d5d7989c75", + "language": "Python", + "lines": 59, + "truncated": false, + "block": 1, + "row": 6027 + }, + { + "path": "src/SR_analysis/1_initial_cleanup.py", + "sha256": "1b95f9efb8f3001d8aa1ae89807bb890ab2b2f4b1ce8e75cb97f7ad9fb784a34", + "language": "Python", + "lines": 56, + "truncated": false, + "block": 1, + "row": 6083 + }, + { + "path": "src/SR_analysis/2_localise.py", + "sha256": "e541952fbfab842d193ddf04539c6d1b5f1820c4daf0c6f40ed02790056ccfa5", + "language": "Python", + "lines": 358, + "truncated": false, + "block": 1, + "row": 8810 + }, + { + "path": "src/SR_analysis/3_measure.py", + "sha256": "47ecc8afe829997cc7e2ecd55e27c30dafb81c408cc30e816300cc92bb61b0f2", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 1, + "row": 5910 + }, + { + "path": "src/SR_analysis/SR_image_reconstruction.py", + "sha256": "889bdc1a66289683890d79e774ecc5193a0587e69a2604bd0339a42dd1b18b2d", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 1, + "row": 7088 + }, + { + "path": "src/SR_analysis/plot_comparison.py", + "sha256": "52c9da9ec49b936801efc65d9c4a1e9a512f4fc0d44924f15cbfe2d4ab65d392", + "language": "Python", + "lines": 185, + "truncated": false, + "block": 1, + "row": 7931 + } + ] +} \ No newline at end of file diff --git a/manifests/9a/github.com__khodakaram__adni-glial-vascular-axis.json b/manifests/9a/github.com__khodakaram__adni-glial-vascular-axis.json new file mode 100644 index 0000000000000000000000000000000000000000..fd7d5d1e81ced2730d40b8b4c847fd2b159a228e --- /dev/null +++ b/manifests/9a/github.com__khodakaram__adni-glial-vascular-axis.json @@ -0,0 +1,165 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/khodakaram/adni-glial-vascular-axis", + "url": "https://github.com/Khodakaram/adni-glial-vascular-axis", + "host": "github.com", + "commit": "27e05ee667a76f7ff19358c4fbb1bca2702607a3", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "01_scan_adni_files.R", + "sha256": "be66f4e998fb6fb5d85d48918a2c4690dc0b1f00ee574d89c3127cc8d7901620", + "language": "R", + "lines": 104, + "truncated": false, + "block": 1, + "row": 10144 + }, + { + "path": "02_inspect_adnimerge2.R", + "sha256": "ac487eb4a03f1e39564230ab132a4d3268382a74b3747ebf1e8956f815c699a6", + "language": "R", + "lines": 156, + "truncated": false, + "block": 1, + "row": 10225 + }, + { + "path": "03_select_adnimerge2_core_candidates.R", + "sha256": "2e98131b3ca88c39a13043d2a09a6da1acc6222cca33c1c83eccffbe486450e0", + "language": "R", + "lines": 89, + "truncated": false, + "block": 1, + "row": 10172 + }, + { + "path": "04_build_clinical_core_dataset.R", + "sha256": "194d6d8e41246666cedb73f5496575b705205ed6a8f484349f002d9197c522a0", + "language": "R", + "lines": 278, + "truncated": false, + "block": 1, + "row": 10340 + }, + { + "path": "05_biomarker_candidate_QA.R", + "sha256": "90e7c3645696e789b00bc25a460daa1c5055b5ce23965cc89ae178359deb39b0", + "language": "R", + "lines": 291, + "truncated": false, + "block": 1, + "row": 10393 + }, + { + "path": "06_merge_selected_biomarkers.R", + "sha256": "4a6690a34574f3cf8f42908855060306281a8d7334bb928568ccd3ed0a047d6f", + "language": "R", + "lines": 406, + "truncated": false, + "block": 1, + "row": 10449 + }, + { + "path": "07_baseline_and_longitudinal_analysis.R", + "sha256": "7063e8bdc746adac6cc11135b0ffcc91a56d7985b76604861e469e2823e6f889", + "language": "R", + "lines": 425, + "truncated": false, + "block": 1, + "row": 10444 + }, + { + "path": "08_model_readiness_QA.R", + "sha256": "05aec44aea4e06cec54ae006e61c8324258bca514bdd29b91508b3bae2dbaef7", + "language": "R", + "lines": 317, + "truncated": false, + "block": 1, + "row": 10394 + }, + { + "path": "11_repair_age_from_ptdemog.R", + "sha256": "25687a595cbd1c1c508b7f75bc1bf07ec275888fbea70c89426a40d6d62ab56b", + "language": "R", + "lines": 329, + "truncated": false, + "block": 1, + "row": 10383 + }, + { + "path": "13_revision_diagnostics.R", + "sha256": "9dffe6eb2a0cc312c44c944a0adde494884534c817b22987c827b14d03a65e4a", + "language": "R", + "lines": 612, + "truncated": false, + "block": 1, + "row": 10563 + }, + { + "path": "14_corrected_primary_analysis.R", + "sha256": "275e16c8617ea00b0b534aead8cbaa2a1bee2b34fa01a63a29a0e2e2fa40ef59", + "language": "R", + "lines": 493, + "truncated": false, + "block": 1, + "row": 10543 + }, + { + "path": "15_sensitivity_analyses.R", + "sha256": "ac3604e08a35a8dc1f29d7980f44f7edaf8ab304172256dd4bcfaa1e29019d02", + "language": "R", + "lines": 389, + "truncated": false, + "block": 1, + "row": 10524 + }, + { + "path": "17_fixes_and_risk_covariates (1).R", + "sha256": "f4820cfda6fcfa52802dd3ada27d5663fb48f477935403be2932affe4c9b6b21", + "language": "R", + "lines": 593, + "truncated": false, + "block": 1, + "row": 10578 + }, + { + "path": "18_risk_adjustment_repaired.R", + "sha256": "b2265da5af69d2a18de161b1b4c981c442b055c26e1d60f34221ace696376013", + "language": "R", + "lines": 457, + "truncated": false, + "block": 1, + "row": 10548 + }, + { + "path": "19_extract_creatinine_from_adnimerge.R", + "sha256": "d61c784450cddd6e9485905dad3ecba0b9ff09a3c9987272f217001f9154c8f1", + "language": "R", + "lines": 284, + "truncated": false, + "block": 1, + "row": 10463 + }, + { + "path": "LICENSE", + "sha256": "321d9024c53e7c1d2ca27fb915e081bb13a6a24e8991a8bf98d2eb8a261a73b2", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2102 + }, + { + "path": "README.md", + "sha256": "c8e9c73d1e699341b3b6550cae362d9e7737d3dcd5cc5e670347d55c3d4cd009", + "language": "Text", + "lines": 3, + "truncated": false, + "block": 1, + "row": 11774 + } + ] +} \ No newline at end of file diff --git a/manifests/9b/github.com__amii-applied-ai__amii-cell-ag-tools.json b/manifests/9b/github.com__amii-applied-ai__amii-cell-ag-tools.json new file mode 100644 index 0000000000000000000000000000000000000000..ede82afe2d513f6fd27b06d717acb0677af8450a --- /dev/null +++ b/manifests/9b/github.com__amii-applied-ai__amii-cell-ag-tools.json @@ -0,0 +1,228 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/amii-applied-ai/amii-cell-ag-tools", + "url": "https://github.com/Amii-Applied-AI/amii-cell-ag-tools/tree/main/active-learning-for-cell-media", + "host": "github.com", + "commit": "5a095fdc795202c1062dbd9609109dec0dbf3b0d", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "de714bcc0d644486b107c570f3eedff601da070e0367a0286b9284ca7b9a886d", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2178 + }, + { + "path": "README.md", + "sha256": "1c43a01150e71b19977490bb8dc9e9dd0241f1ece0f224887de6a9444c60fb9c", + "language": "Text", + "lines": 5, + "truncated": false, + "block": 1, + "row": 11777 + }, + { + "path": "active-learning-for-cell-media/experiments/Hard_Mode/Harder_Mode_Hide_The_Label.py", + "sha256": "d9dfd29ce7789b4ce533e739a4e6fb0ba40fa4acefb27c737f0ae7ae01523a82", + "language": "Python", + "lines": 757, + "truncated": false, + "block": 1, + "row": 9669 + }, + { + "path": "active-learning-for-cell-media/experiments/Hard_Mode/Harder_Mode_Open_Race.py", + "sha256": "568ec74e3068fa964727b0c2f953a2b448ec62f2070172d09ab8eadef9ab1c35", + "language": "Python", + "lines": 823, + "truncated": false, + "block": 1, + "row": 9683 + }, + { + "path": "active-learning-for-cell-media/experiments/Regular_Mode/Regular_Mode_Hide_The_Label.py", + "sha256": "e3a93e5dfebb82e0c3c9ee14178c132762a6515eb4139573cb359befa9f2f75f", + "language": "Python", + "lines": 1791, + "truncated": false, + "block": 1, + "row": 9846 + }, + { + "path": "active-learning-for-cell-media/experiments/Regular_Mode/Regular_Mode_Open_Race.py", + "sha256": "40c97431ea3253386e5b559d3d54ccfc0e5aba6f1f2a24d9fbd1c239c47a3f8f", + "language": "Python", + "lines": 978, + "truncated": false, + "block": 1, + "row": 9735 + }, + { + "path": "active-learning-for-cell-media/experiments/Visualization_and_Tables/Hide_The_Label_bar_plots.py", + "sha256": "05f208174c260b487555f6eda00bb512e9809e99e7171e6161c113d744bf0692", + "language": "Python", + "lines": 202, + "truncated": false, + "block": 1, + "row": 8086 + }, + { + "path": "active-learning-for-cell-media/experiments/Visualization_and_Tables/Open_Race_best_so_far_plots.py", + "sha256": "1948e907e2140e2ff90a12bdcddb9ad6114a3a82206befb2a2e41da15e080bb3", + "language": "Python", + "lines": 170, + "truncated": false, + "block": 1, + "row": 7685 + }, + { + "path": "active-learning-for-cell-media/experiments/Visualization_and_Tables/statistical_analysis_tables.py", + "sha256": "36d28515f881e2fe46ebd6826aad696edd34640f857b32fd7a50fbfddd0002ae", + "language": "Python", + "lines": 621, + "truncated": false, + "block": 1, + "row": 9528 + }, + { + "path": "active-learning-for-cell-media/landing_page/playground_data.js", + "sha256": "30a8bfd9c91a43e1c6b66c7082e68aaf0a112149347c21d825b82d2ad1e5a6d3", + "language": "JavaScript", + "lines": 4, + "truncated": true, + "block": 1, + "row": 1555 + }, + { + "path": "active-learning-for-cell-media/landing_page/script.js", + "sha256": "b3676b777c8583cdf5d0f74c3e129afb24cfb4fdf70d9a96e3ebb611a7c50b19", + "language": "JavaScript", + "lines": 763, + "truncated": false, + "block": 1, + "row": 1514 + }, + { + "path": "active-learning-for-cell-media/main.py", + "sha256": "e681b8ed372f27ecc148d166257d769cbc131b4c39162286fbb3d66633144b08", + "language": "Python", + "lines": 533, + "truncated": false, + "block": 1, + "row": 9305 + }, + { + "path": "active-learning-for-cell-media/reproduce/run_hide_the_label.py", + "sha256": "0881a6df94d224c473b5f4b8d071c95b1387716aede774f2cfa64e8d2c4f7c29", + "language": "Python", + "lines": 111, + "truncated": false, + "block": 1, + "row": 7677 + }, + { + "path": "active-learning-for-cell-media/reproduce/run_open_race.py", + "sha256": "47cb3187d11e1c58bf4c8297018e74282269171d41e4f119779f264cf191fee3", + "language": "Python", + "lines": 94, + "truncated": false, + "block": 1, + "row": 7332 + }, + { + "path": "active-learning-for-cell-media/utils/datasets.py", + "sha256": "5fde24d3b05ff4bc782906582003ecb0cdb7100d688218a6b10de4e4a2f694ea", + "language": "Python", + "lines": 320, + "truncated": false, + "block": 1, + "row": 8760 + }, + { + "path": "active-learning-for-cell-media/utils/harder_surrogates.py", + "sha256": "f6773e158b88fe0a53b26e69de760a6677ecb2908380e04539c58cf35d34d7d4", + "language": "Python", + "lines": 920, + "truncated": false, + "block": 1, + "row": 9707 + }, + { + "path": "active-learning-for-cell-media/utils/open_race_optimizers.py", + "sha256": "15f7edd55febd6c24c2ac2d3b99d6725f9f8fffc61466309f2c8681a4a3ac003", + "language": "Python", + "lines": 344, + "truncated": false, + "block": 1, + "row": 8950 + }, + { + "path": "active-learning-for-cell-media/utils/optimisers_for_harder_open_race.py", + "sha256": "50d38e2707b7f4525458e8a4d9994c534b581acc0b20442e54b1c0f5300da016", + "language": "Python", + "lines": 279, + "truncated": false, + "block": 1, + "row": 8571 + }, + { + "path": "active-learning-for-cell-media/utils/optimizers.py", + "sha256": "72c4816b5113c4e04082d9d452222380c1898efb49b74edaad8fc217a421ff4e", + "language": "Python", + "lines": 1927, + "truncated": false, + "block": 1, + "row": 9844 + }, + { + "path": "active-learning-for-cell-media/utils/sparse_gp_approximations.py", + "sha256": "976229eeb6c5ba7561e6e9c07f0329d3f39d53a99e9fee3cec9c4ceb80d8870a", + "language": "Python", + "lines": 544, + "truncated": false, + "block": 1, + "row": 9372 + }, + { + "path": "protein-thermostability-data-tools/column_extraction-DeepSeek.py", + "sha256": "9e7ea20c3c49837f58cffb4fe8fd09f9ab3889ef93fe0357c3439ce9e91ca2a7", + "language": "Python", + "lines": 287, + "truncated": false, + "block": 1, + "row": 8627 + }, + { + "path": "protein-thermostability-data-tools/column_extraction-GPT.py", + "sha256": "538c8fffc35fdddc7b1a843ae145cf7c11a7c63024d891f47a72acb1b348f3ff", + "language": "Python", + "lines": 330, + "truncated": false, + "block": 1, + "row": 8763 + }, + { + "path": "protein-thermostability-data-tools/consistency-check-regex-rules.py", + "sha256": "f13b30e68055f6f9662fae55d6a10c358fdbd15cfad4b162084f7294a81ba1a1", + "language": "Python", + "lines": 41, + "truncated": false, + "block": 1, + "row": 6020 + }, + { + "path": "protein-thermostability-data-tools/consistency-check.py", + "sha256": "47fc97db3993f7c92d6759362f69b5032fb444f4c27573acc01a4c9b02a0fb78", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 1, + "row": 7219 + } + ] +} \ No newline at end of file diff --git a/manifests/9b/github.com__ceccarellilab__scepi-immune.json b/manifests/9b/github.com__ceccarellilab__scepi-immune.json new file mode 100644 index 0000000000000000000000000000000000000000..139be02fdca1a3ec987d080e9d36cfca4ae8da1f --- /dev/null +++ b/manifests/9b/github.com__ceccarellilab__scepi-immune.json @@ -0,0 +1,444 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ceccarellilab/scepi-immune", + "url": "https://github.com/ceccarellilab/scEPI-Immune", + "host": "github.com", + "commit": "122ad74637d6099e275e1032e1f691ef76536d02", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "Figure_script.R", + "sha256": "813a183abc838afb885867d7b29f9ea5c1af7e8df63ec3637bde019436c86656", + "language": "R", + "lines": 2642, + "truncated": false, + "block": 2, + "row": 2380 + }, + { + "path": "LICENSE", + "sha256": "03c521785634fed3c383f4220bc08c0c068de6d9a716cb82ff4b0e96a0c47f6d", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1134 + }, + { + "path": "README.md", + "sha256": "57cdc8685691590543bfe4e5ebc764176fd2422e35eccccdc6023772ea0b8ece", + "language": "Text", + "lines": 78, + "truncated": false, + "block": 2, + "row": 2639 + }, + { + "path": "TE_workflow.R", + "sha256": "67a943441961627f6d0a3d596f631796d87d8795487204ac894cc2fba1af0afc", + "language": "R", + "lines": 348, + "truncated": false, + "block": 2, + "row": 2343 + }, + { + "path": "snATAC/01-Pre-processing.R", + "sha256": "fdcd293aca9664bf11229ec5117ce88dbc6b02060f22f59d1918ad5da0dba991", + "language": "R", + "lines": 246, + "truncated": false, + "block": 2, + "row": 2328 + }, + { + "path": "snATAC/02-TME_annotation.R", + "sha256": "41764fc4041c5b50f5518fb9f3cb7f38781b04d8db89920fa9618ab53ee57d47", + "language": "R", + "lines": 385, + "truncated": false, + "block": 2, + "row": 2363 + }, + { + "path": "snATAC/03-Metaprogram_assignment.R", + "sha256": "f6291c3519a255abbe79a276aa8e5df37cf3a5ed26d7a42faf9c7b03ead71357", + "language": "R", + "lines": 94, + "truncated": false, + "block": 2, + "row": 2286 + }, + { + "path": "snATAC/04-Peak_calling.R", + "sha256": "e8fce59b6f89e160311ddf39fc2d6da9290db20c3d77a146cd3f480181ff489a", + "language": "R", + "lines": 140, + "truncated": false, + "block": 2, + "row": 2319 + }, + { + "path": "snATAC/05-Motif_analysis.R", + "sha256": "4f4596df13fd87ca32cf4b8ffb69c66ad8eb4d4a61387e716c324fa082114d11", + "language": "R", + "lines": 470, + "truncated": false, + "block": 2, + "row": 2360 + }, + { + "path": "snRNA/01-Individual_preprocessing.R", + "sha256": "c610e98254f0a9b08692b2615c73d6afa9dbe36ceb7db1807b0a25c7af8a4c6b", + "language": "R", + "lines": 93, + "truncated": false, + "block": 2, + "row": 2275 + }, + { + "path": "snRNA/02-Merge_objects.R", + "sha256": "17d9f416aee1aac384b3c3eb39bdde0eeac02c9772edec92d34c9d2861425a5a", + "language": "R", + "lines": 69, + "truncated": false, + "block": 2, + "row": 2271 + }, + { + "path": "snRNA/03-TME_annotation.R", + "sha256": "940827c80c5724eb5ef784591e374d7034912b84473bbc237bc0abcd19f12d02", + "language": "R", + "lines": 258, + "truncated": false, + "block": 2, + "row": 2337 + }, + { + "path": "snRNA/04-Run_NMF.R", + "sha256": "5351975ab9960939d112519076ad2fbac66a48f4b7a56b753f9734d6aae0cefd", + "language": "R", + "lines": 99, + "truncated": false, + "block": 2, + "row": 2278 + }, + { + "path": "snRNA/05-Metaprograms.R", + "sha256": "975eb2ae121b4e591c72349ac17bce8115b6e4668ecd2227be4cbccd7d3301d4", + "language": "R", + "lines": 290, + "truncated": false, + "block": 2, + "row": 2350 + }, + { + "path": "snRNA/06-Metaprogram_assignment.R", + "sha256": "05af19e3483ca5fa186ab3c4dacaa0f75a32e3009c3e76ad5b0d89fd7f50c36d", + "language": "R", + "lines": 155, + "truncated": false, + "block": 2, + "row": 2326 + }, + { + "path": "snRNA/07-DEGs_memento.ipynb", + "sha256": "946237412c0c25a6bee8468ccc43e7a9951e6aa0b6ea705fb85e4f7ec746edcc", + "language": "Jupyter", + "lines": 55, + "truncated": false, + "block": 2, + "row": 1008 + }, + { + "path": "snRNA/08-GSEA_DEGs.R", + "sha256": "c22a368a01056c6e4891ac2e2939c3d7f3969962022ac885032c473e40cb2e80", + "language": "R", + "lines": 46, + "truncated": false, + "block": 2, + "row": 2267 + }, + { + "path": "snRNA/09-CellChat.R", + "sha256": "31bdb8e79fce888210e18e1c332ca298ca55f2cf0cb35dc52d8bfc409139c448", + "language": "R", + "lines": 163, + "truncated": false, + "block": 2, + "row": 2323 + }, + { + "path": "snRNA/10-Melanoma_bulk.R", + "sha256": "0e46f18b6e7ae5b3e2b488b67a49feb37e2451797af175d0d4757d74bcadea75", + "language": "R", + "lines": 1543, + "truncated": false, + "block": 2, + "row": 2379 + }, + { + "path": "snRNA/11-Pozniak_et_al.R", + "sha256": "173f16f384cf4640cf73489dba5996688b55509e7984572c471795a2e17ea748", + "language": "R", + "lines": 177, + "truncated": false, + "block": 2, + "row": 2321 + }, + { + "path": "snRNA/12-GRN_Pozniak.R", + "sha256": "ca19ce87f51e6372f5c38b7f5f14b6749dd0e34178e6bf746d7de564b91f2d6c", + "language": "R", + "lines": 194, + "truncated": false, + "block": 2, + "row": 2330 + }, + { + "path": "snRNA/14-NFATC2.R", + "sha256": "cd80ac01287c20d29ce0226f8b1c280c3bcc29c573a57cb2fcc0480e9e8e30e5", + "language": "R", + "lines": 395, + "truncated": false, + "block": 2, + "row": 2347 + }, + { + "path": "snRNA_snATAC/01-Co-embedding_preprocessing.R", + "sha256": "5fdee0c29de23ee9458cbf742f0f6f260e6c6c87b7e4fa8213b042857fb69c5d", + "language": "R", + "lines": 522, + "truncated": false, + "block": 2, + "row": 2364 + }, + { + "path": "snRNA_snATAC/02-SCENICplus_pycisTopic.py", + "sha256": "e8ea5c784aa6dba502ec800c0d4b58731c96957d1a1ff54ec59126e11c935f15", + "language": "Python", + "lines": 160, + "truncated": false, + "block": 2, + "row": 1963 + }, + { + "path": "snRNA_snATAC/03-Create_cisTarget_db.sh", + "sha256": "f3ae4ec8d77f5d364b26bbd6cb5b50d97c37d41f9491425b1b5520d865b384bf", + "language": "Shell", + "lines": 27, + "truncated": false, + "block": 2, + "row": 2524 + }, + { + "path": "snRNA_snATAC/05-Save_SCENICplus_output.ipynb", + "sha256": "8a883f19ec846863277419693d8b818860c4725216f00baacc2c7dc35e715ab9", + "language": "Jupyter", + "lines": 237, + "truncated": false, + "block": 2, + "row": 1065 + }, + { + "path": "snRNA_snATAC/06-SCENICplus_downstream.R", + "sha256": "fcea3d4e8cb5743dde3fa2a42892e1793541f811edecc258728b910855acd079", + "language": "R", + "lines": 352, + "truncated": false, + "block": 2, + "row": 2353 + }, + { + "path": "snRNA_snATAC/07-Overlap_SCENICplusEncode.R", + "sha256": "dfbeac11fa932bc6f41388b9a4343d400b785b61362e888e3ce167240fbb36fe", + "language": "R", + "lines": 118, + "truncated": false, + "block": 2, + "row": 2293 + }, + { + "path": "snRNA_snATAC/08-Perturbation_regressors.py", + "sha256": "323e0408803b529ce25b6c4e841c15629f9b2120ab3e20471aca3fcc4481fb8f", + "language": "Python", + "lines": 97, + "truncated": false, + "block": 2, + "row": 1822 + }, + { + "path": "snRNA_snATAC/09-perturbation_iteration.py", + "sha256": "f33100bc16a554409c7886450d33bcbc3c34e50a358035377184d5f537680030", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 2, + "row": 1738 + }, + { + "path": "snRNA_snATAC/11-MP4_perturbation.R", + "sha256": "a09ce3344b95602fe8328b0f869e8f0c1a469db2e58379690b136c72fcde2971", + "language": "R", + "lines": 98, + "truncated": false, + "block": 2, + "row": 2279 + }, + { + "path": "visiumHD/1-Segmentation.ipynb", + "sha256": "515fa3b9c426b4ab189535da33aa79b8336b2d56734d0121380193338431a047", + "language": "Jupyter", + "lines": 181, + "truncated": false, + "block": 2, + "row": 1050 + }, + { + "path": "visiumHD/2-OT_mapping.ipynb", + "sha256": "6f9776bd3d305d8a0bf72c7b14c0e74377a1db03d293ed5d80054a6319c086cc", + "language": "Jupyter", + "lines": 266, + "truncated": false, + "block": 2, + "row": 1066 + }, + { + "path": "visiumHD/3-Infiltration.ipynb", + "sha256": "1461db2e469e917e87e86e27815ea8ca1f68dd0c635ce77a39924c7cf012e71e", + "language": "Jupyter", + "lines": 534, + "truncated": false, + "block": 2, + "row": 1098 + }, + { + "path": "visiumHD/4-TSPS_correlations.ipynb", + "sha256": "28d2ee4c83dc11cef8b8ba89f7dbec4eb8fc4f73edc23b991f635bf1903b7820", + "language": "Jupyter", + "lines": 291, + "truncated": false, + "block": 2, + "row": 1074 + }, + { + "path": "visiumHD/5-TSPS.ipynb", + "sha256": "84ffcea13ad4feee80f28702910772eafc8d936d0828ff9cf1bf7f13e71fad61", + "language": "Jupyter", + "lines": 262, + "truncated": false, + "block": 2, + "row": 1062 + }, + { + "path": "visiumHD/6-Spatial_Intereactions.ipynb", + "sha256": "7c7083360aecbc205bdba17932395b84d08321f46f19e99eaed321a7c55000a4", + "language": "Jupyter", + "lines": 173, + "truncated": false, + "block": 2, + "row": 1048 + }, + { + "path": "visiumHD/Annotations/2-AnnotateP13W0.ipynb", + "sha256": "848846fefe0e6ddeef265244628bbb577483b02d994c5977790cda1aa66eceb4", + "language": "Jupyter", + "lines": 114, + "truncated": false, + "block": 2, + "row": 1014 + }, + { + "path": "visiumHD/Annotations/2-AnnotateP13W12.ipynb", + "sha256": "fe93106b9e82acaefcdc210865913813eb4bf6750770b771ebc11c96a99d0a24", + "language": "Jupyter", + "lines": 112, + "truncated": false, + "block": 2, + "row": 1015 + }, + { + "path": "visiumHD/Annotations/2-AnnotateP13W4.ipynb", + "sha256": "7cba6f29549732cd80e054393792aa6ca4a3f700016032111a4ad3e3a5b312c4", + "language": "Jupyter", + "lines": 123, + "truncated": false, + "block": 2, + "row": 1018 + }, + { + "path": "visiumHD/Annotations/2-AnnotateP2W12.ipynb", + "sha256": "a5454023be51c866bd3263c0b5c57c98d4414e1cfbc82a7cd6851b69607679d8", + "language": "Jupyter", + "lines": 123, + "truncated": false, + "block": 2, + "row": 1017 + }, + { + "path": "visiumHD/Annotations/2-AnnotateP2W4.ipynb", + "sha256": "edf0b63271d68ba9611ad77f670ba3942ea82bb68f5794f85b11df05c7668d55", + "language": "Jupyter", + "lines": 123, + "truncated": false, + "block": 2, + "row": 1016 + }, + { + "path": "visiumHD/Annotations/2-AnnotateP3W0.ipynb", + "sha256": "e06255f2a067f90fef67f1e2923a7e5421c0b6b887e0892d39324b9bd812bb8a", + "language": "Jupyter", + "lines": 195, + "truncated": false, + "block": 2, + "row": 1044 + }, + { + "path": "visiumHD/Annotations/2-AnnotateP3W4.ipynb", + "sha256": "e79fc53f9722c4d50d51354a82752c23f01a336e823ca7dc5d52fb24377da11b", + "language": "Jupyter", + "lines": 143, + "truncated": false, + "block": 2, + "row": 1027 + }, + { + "path": "visiumHD/Annotations/2-AnnotateP6W0.ipynb", + "sha256": "5ed098d03e00c01eee9ad15a5bba89079d40cd0d77cd1e1df7c257ed0cf1cba6", + "language": "Jupyter", + "lines": 145, + "truncated": false, + "block": 2, + "row": 1028 + }, + { + "path": "visiumHD/Annotations/2-AnnotateP6W4.ipynb", + "sha256": "c7382b2136cdd1e6f9be48c98519086c28ecf4e769b99be244355e5794e38275", + "language": "Jupyter", + "lines": 139, + "truncated": false, + "block": 2, + "row": 1025 + }, + { + "path": "visiumHD/Xenium_Pozniak/1-xeniumData.ipynb", + "sha256": "10efc96c785d9563e2bf02c408e7ba7a857fd5b82edb7f62ee5b471b3df0494b", + "language": "Jupyter", + "lines": 310, + "truncated": false, + "block": 2, + "row": 1064 + }, + { + "path": "visiumHD/Xenium_Pozniak/2-OT.ipynb", + "sha256": "be2a20a7f42a5b93f60217ea8fcd31e96032b1fb68469ee2d682d2c553c69c07", + "language": "Jupyter", + "lines": 158, + "truncated": false, + "block": 2, + "row": 1029 + } + ] +} \ No newline at end of file diff --git a/manifests/9c/github.com__ay-lab__dchic.json b/manifests/9c/github.com__ay-lab__dchic.json new file mode 100644 index 0000000000000000000000000000000000000000..d3e74d344c997301ba0f565d506de56280a9e638 --- /dev/null +++ b/manifests/9c/github.com__ay-lab__dchic.json @@ -0,0 +1,102 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ay-lab/dchic", + "url": "https://github.com/ay-lab/dcHiC/tree/master", + "host": "github.com", + "commit": "144b4dfed665a8ddbd90ab3bff778736e8fde796", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "ebdeaa05f41a5850a66021fdf80f3f60e78fb5d0dc25ecec184e6b902a1fad76", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2081 + }, + { + "path": "README.md", + "sha256": "26287714ffd2d3755625f973a8e108a593be9ced2c275a7f782a56ebd9cac596", + "language": "Text", + "lines": 251, + "truncated": false, + "block": 1, + "row": 11984 + }, + { + "path": "dchicf.r", + "sha256": "29b4090b992014065c35ca362417088383c1452d3d987f7cd65856dc5198ddcf", + "language": "R", + "lines": 2976, + "truncated": false, + "block": 1, + "row": 10619 + }, + { + "path": "utility/Chromosome_ArmWise_PCA/run_dcHiC_chrArms_combine_step2.pl", + "sha256": "03c8b27546c7eeac3f52a2f8ed3826e6806092b09b0c5e57e531d26eaca93c62", + "language": "Perl", + "lines": 97, + "truncated": false, + "block": 1, + "row": 4788 + }, + { + "path": "utility/Chromosome_ArmWise_PCA/run_dcHiC_chrArms_pca_step1.pl", + "sha256": "4531210a2dd8b061d863d8f5e9d12e95ed99175e3ab9b4cf1f195f7db64757cc", + "language": "Perl", + "lines": 211, + "truncated": false, + "block": 1, + "row": 4919 + }, + { + "path": "utility/getcHiCinputfromExistingPCs.r", + "sha256": "e79ae70fb9c9789b78d608efd6ab1e605053b0b5a8b7aea9ac8a76196b525303", + "language": "R", + "lines": 45, + "truncated": false, + "block": 1, + "row": 10072 + }, + { + "path": "utility/mergeDEcompartments.sh", + "sha256": "867eab2e2cf03ac55421336e0c20afe72e74ad7f5f0a2087eae61555f65a2824", + "language": "Shell", + "lines": 10, + "truncated": false, + "block": 1, + "row": 11145 + }, + { + "path": "utility/pcacluster.r", + "sha256": "24408cd4dac77fb6152d4347e44a808e3341da438d44a03b566fb9169d38a7ba", + "language": "R", + "lines": 327, + "truncated": false, + "block": 1, + "row": 10496 + }, + { + "path": "utility/preprocess.py", + "sha256": "9cff7950dfa05bcc24360f63705100783cf817a535d9ea9b9354f98fa6a6090c", + "language": "Python", + "lines": 184, + "truncated": false, + "block": 1, + "row": 7858 + }, + { + "path": "utility/reselectpc.r", + "sha256": "8baf4d1c483409aa04fb6efa422279afa97ac952ff08b991e882b93bb6854684", + "language": "R", + "lines": 79, + "truncated": false, + "block": 1, + "row": 10187 + } + ] +} \ No newline at end of file diff --git a/manifests/9c/github.com__perlsonlab__bioprotocol.json b/manifests/9c/github.com__perlsonlab__bioprotocol.json new file mode 100644 index 0000000000000000000000000000000000000000..47c64f2c15941b072ae77ab536cd35ab034e9913 --- /dev/null +++ b/manifests/9c/github.com__perlsonlab__bioprotocol.json @@ -0,0 +1,48 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/perlsonlab/bioprotocol", + "url": "https://github.com/PerlsonLab/Bioprotocol", + "host": "github.com", + "commit": "237b34ede8472c9d4f025aec6e010884ffc568cd", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "67ac987fa50f9129deb871d0bc2555e89de6bbfe8fb2345480c659b99c3ef2ab", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2103 + }, + { + "path": "README.md", + "sha256": "f8d7678f18936c5a6985470019d94532d6315bae6a6fd972096564131a5d44d6", + "language": "Text", + "lines": 13, + "truncated": false, + "block": 1, + "row": 11790 + }, + { + "path": "Semi-Automated Analysis scripts/Choose_threshold.py", + "sha256": "e83b89ef65cd401e15c0509e54490f77118a685f798b456ab26280727c2518c5", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 1, + "row": 6621 + }, + { + "path": "Semi-Automated Analysis scripts/Remerge_channels.py", + "sha256": "da1d8b1118eafca5fa2f7fabac2e3a994f057ba586fff6de2e3415dc9b6d9a77", + "language": "Python", + "lines": 158, + "truncated": false, + "block": 1, + "row": 7634 + } + ] +} \ No newline at end of file diff --git a/manifests/9d/github.com__zzariry__pymocokit.json b/manifests/9d/github.com__zzariry__pymocokit.json new file mode 100644 index 0000000000000000000000000000000000000000..4836159ee5a2219b745da048f3e5b8e94ee13f17 --- /dev/null +++ b/manifests/9d/github.com__zzariry__pymocokit.json @@ -0,0 +1,165 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/zzariry/pymocokit", + "url": "https://github.com/zzariry/pyMocoKit", + "host": "github.com", + "commit": "523a9a96c6d06ab7cebe7c85680f79f3db90a46d", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "1ad7ca23f37e21c68bc3640738296004065a175619e6a4eceebfb02c1531e3ef", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2129 + }, + { + "path": "README.md", + "sha256": "5a839954074a683e5cf67f7643675311c5db5f84a90da6b361ed8a61ff25d42f", + "language": "Text", + "lines": 69, + "truncated": false, + "block": 1, + "row": 11831 + }, + { + "path": "mocokit/__init__.py", + "sha256": "d800874878c0e43f6e4dfd95396b4871931489ac45de25916041ad55d4c46d52", + "language": "Python", + "lines": 18, + "truncated": false, + "block": 1, + "row": 5338 + }, + { + "path": "mocokit/cli.py", + "sha256": "3fc134b8226926edb280c9e7c2ac43ba47fd0ddec9eea138c04ecbbde2994955", + "language": "Python", + "lines": 114, + "truncated": false, + "block": 1, + "row": 7410 + }, + { + "path": "mocokit/coils.py", + "sha256": "afdee60cd0473fc3baf4ef77de574c6caacc62e1b7b72935529a9a2828c85228", + "language": "Python", + "lines": 263, + "truncated": false, + "block": 1, + "row": 8740 + }, + { + "path": "mocokit/data_io.py", + "sha256": "809073216a6e92cd1c976c4f676bd0ce22eb73282cc830f9686082635939788e", + "language": "Python", + "lines": 548, + "truncated": false, + "block": 1, + "row": 9307 + }, + { + "path": "mocokit/gridding.py", + "sha256": "0d565068487c72f833baaf8c0a3b54b04ce1b24c7bdff620a8834e6161643b55", + "language": "Python", + "lines": 293, + "truncated": false, + "block": 1, + "row": 8632 + }, + { + "path": "mocokit/ipat.py", + "sha256": "467fe27dfab773b14068c569f7544cc5d8fe1c3b6d1e02f6b59522282e9e7e9c", + "language": "Python", + "lines": 255, + "truncated": false, + "block": 1, + "row": 8489 + }, + { + "path": "mocokit/logconfig.py", + "sha256": "e02fcc7e01b75422dca0f2a42aa3ac4376d8779a7a5231a39c2f52b3c6a7122c", + "language": "Python", + "lines": 19, + "truncated": false, + "block": 1, + "row": 5390 + }, + { + "path": "mocokit/modified_mdgrappa.py", + "sha256": "0c35ad9879c33bdb6a23a4aaa80178c0df62e610b728dddb92ed56e7b771af7f", + "language": "Python", + "lines": 244, + "truncated": false, + "block": 1, + "row": 8456 + }, + { + "path": "mocokit/motion.py", + "sha256": "8729cd71924b9e67ec186d0107b4cde0d65e9e6f7103fea4f292717ed16b51b7", + "language": "Python", + "lines": 385, + "truncated": false, + "block": 1, + "row": 9228 + }, + { + "path": "mocokit/mtypes.py", + "sha256": "90d61de14db5a8c0f86e4d5abd3c45606b45ab3945afaffeba293d28ccf43415", + "language": "Python", + "lines": 46, + "truncated": false, + "block": 1, + "row": 5855 + }, + { + "path": "mocokit/pf_handling.py", + "sha256": "54b828d0cbf0ad5e40c57749fb765c670f68a702874d57348375754ec6e89685", + "language": "Python", + "lines": 98, + "truncated": false, + "block": 1, + "row": 7218 + }, + { + "path": "mocokit/recon.py", + "sha256": "c0f65b5b8e871fb6b65996d301213e636bd7993614b91ed6a9706a4acb959c1f", + "language": "Python", + "lines": 275, + "truncated": false, + "block": 1, + "row": 8785 + }, + { + "path": "mocokit/runtime.py", + "sha256": "fa3df4f5e9779ee82c8e48bdc739698c6fd76fca47db519ae409baa7721ea097", + "language": "Python", + "lines": 21, + "truncated": false, + "block": 1, + "row": 5439 + }, + { + "path": "mocokit/utils.py", + "sha256": "2f659a9c4378670266a6beda5ff5d3d8d5c82978a86b4100a9f269ab903c1264", + "language": "Python", + "lines": 355, + "truncated": false, + "block": 1, + "row": 8962 + }, + { + "path": "tests/test_import.py", + "sha256": "ec4faca5b42b1208d955485016c1057191b8e33a8634bce600a896f39d695dc3", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 1, + "row": 5047 + } + ] +} \ No newline at end of file diff --git a/manifests/9e/github.com__cibion-conicet__gollum.json b/manifests/9e/github.com__cibion-conicet__gollum.json new file mode 100644 index 0000000000000000000000000000000000000000..b20349d7a1b4019a4a2d655c9a5f0142b612ef95 --- /dev/null +++ b/manifests/9e/github.com__cibion-conicet__gollum.json @@ -0,0 +1,129 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/cibion-conicet/gollum", + "url": "https://github.com/cibion-conicet/Gollum", + "host": "github.com", + "commit": "b97868cff590ccdf6df0dfe61a939f85cf83a47d", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "589ed823e9a84c56feb95ac58e7cf384626b9cbf4fda2a907bc36e103de1bad2", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2232 + }, + { + "path": "README.rst", + "sha256": "d09e98f442ee039564880b86b2dab723cd8e86626d6f7d398f44d8880451c3f3", + "language": "Text", + "lines": 155, + "truncated": false, + "block": 1, + "row": 11946 + }, + { + "path": "bin/ringFinder.py", + "sha256": "274ad14429ae4bb31c2351669b967561856d079d47db4e4567f33644ec36419e", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5204 + }, + { + "path": "bin/ringFinderDeveloper.py", + "sha256": "1fd696f64008166f1a0dac6d21a9a2190777bb3f83c7e19129bcafd057db7a6c", + "language": "Python", + "lines": 16, + "truncated": false, + "block": 1, + "row": 5215 + }, + { + "path": "bin/testdata_maker.py", + "sha256": "bb4450ea67b811931e64b3d420657bda3047d3a68c98c30b7f538114dcc9ec53", + "language": "Python", + "lines": 13, + "truncated": false, + "block": 1, + "row": 5148 + }, + { + "path": "ringfinder/neurosimulations.py", + "sha256": "bf7fef8ba1ef7c329f9ac6969c21eae2b22308f8c1dea985efc40da27fd8e2fb", + "language": "Python", + "lines": 76, + "truncated": false, + "block": 1, + "row": 6535 + }, + { + "path": "ringfinder/pyqtsubclass.py", + "sha256": "51cb894da7a311eda5f90bcedd70ceabba950a3ec25cbbc256ed2fbbe7740556", + "language": "Python", + "lines": 137, + "truncated": false, + "block": 1, + "row": 7571 + }, + { + "path": "ringfinder/ringFinder.py", + "sha256": "2aeaa7f087294f470a2dbcb7a26a5960d72766d8c888098e0decbf58b55db915", + "language": "Python", + "lines": 676, + "truncated": false, + "block": 1, + "row": 9590 + }, + { + "path": "ringfinder/ringFinderDeveloper.py", + "sha256": "4a65f03760cdcf9c620f8a8aadf82e7d6bfe123740636d80bc5c0694fbbad2ea", + "language": "Python", + "lines": 609, + "truncated": false, + "block": 1, + "row": 9522 + }, + { + "path": "ringfinder/ringFinderThreads.py", + "sha256": "c52b212e8aba56d5dcd24748a25eb03cd488c5071b2aa0db6e0adcf24299a877", + "language": "Python", + "lines": 755, + "truncated": false, + "block": 1, + "row": 9648 + }, + { + "path": "ringfinder/testdata_maker.py", + "sha256": "4d3aaa576b7eaab5e5b319b209e5d3676836715b45ae4021e58eb24c0440f740", + "language": "Python", + "lines": 208, + "truncated": false, + "block": 1, + "row": 7759 + }, + { + "path": "ringfinder/tools.py", + "sha256": "2b5a631f30289373bf98d30ad253c3c934a99697971bf7226107d9ab615f267d", + "language": "Python", + "lines": 541, + "truncated": false, + "block": 1, + "row": 9187 + }, + { + "path": "ringfinder/utils.py", + "sha256": "d232d446ae218fbc728d39e510231be4a82442551ff27a472b2f97f799984dcc", + "language": "Python", + "lines": 42, + "truncated": false, + "block": 1, + "row": 5829 + } + ] +} \ No newline at end of file diff --git a/manifests/9e/github.com__washufluidbiomarkers__dynamic-visualization.json b/manifests/9e/github.com__washufluidbiomarkers__dynamic-visualization.json new file mode 100644 index 0000000000000000000000000000000000000000..6490590713bcacfbc7648cd35038824b749d340c --- /dev/null +++ b/manifests/9e/github.com__washufluidbiomarkers__dynamic-visualization.json @@ -0,0 +1,93 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/washufluidbiomarkers/dynamic-visualization", + "url": "https://github.com/WashUFluidBiomarkers/Dynamic-Visualization", + "host": "github.com", + "commit": "eea99a6334b8ff76a8dfc5a0670a7c979fece5be", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "6e267f018003c59d3701407987ec31a47c40b76637944916ad2662fba9af3eb7", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2161 + }, + { + "path": "Movie_Data_code/Needed_Functions.R", + "sha256": "858109bbc1cb5048145623e3dc08f9fef567cb19fe62b082fcedce965f37930b", + "language": "R", + "lines": 591, + "truncated": false, + "block": 1, + "row": 10582 + }, + { + "path": "Movie_Data_code/app.r", + "sha256": "b463e69a0fdf55666b1feeb2201e1bc0a2e651386b1f57fbd0175ec529a4e11e", + "language": "R", + "lines": 568, + "truncated": false, + "block": 1, + "row": 10565 + }, + { + "path": "Preprocessing_Code/prep_code.R", + "sha256": "78b1a0e76362dd47e82d9a62657f6407a356f9564ce311193cd5a89b01c330e9", + "language": "R", + "lines": 430, + "truncated": false, + "block": 1, + "row": 10555 + }, + { + "path": "README.md", + "sha256": "9930615e5307c6cc027102e8f479ebe7ba48132ef7641ffd482a52134aeb82d2", + "language": "Text", + "lines": 193, + "truncated": false, + "block": 1, + "row": 11952 + }, + { + "path": "Raindrop_Plots_Code/Needed_Functions.R", + "sha256": "74f9092f28f7323a2881bb82b020598b90394240b9f447eb2d5aff55b219c8f7", + "language": "R", + "lines": 600, + "truncated": false, + "block": 1, + "row": 10587 + }, + { + "path": "Raindrop_Plots_Code/app.r", + "sha256": "16604dd54ffb99c7f110de0a0d843a7aaced8a937c4f687eadf80a6dacee1aee", + "language": "R", + "lines": 736, + "truncated": false, + "block": 1, + "row": 10579 + }, + { + "path": "Time_Trails_Code/Needed_Functions.R", + "sha256": "8384df1432ed9abb6a0edb4385ad997bec6d3eb1fbafd924157c8d612683eb44", + "language": "R", + "lines": 575, + "truncated": false, + "block": 1, + "row": 10581 + }, + { + "path": "Time_Trails_Code/app.r", + "sha256": "5795bb6d6323c17dbe299e6c2aa70b6ba07680dc7fc753b1f343dd330742363d", + "language": "R", + "lines": 745, + "truncated": false, + "block": 1, + "row": 10577 + } + ] +} \ No newline at end of file diff --git a/manifests/9f/github.com__alexploner__cfdr.pleio.json b/manifests/9f/github.com__alexploner__cfdr.pleio.json new file mode 100644 index 0000000000000000000000000000000000000000..5248ff3043c176c3e21e2f5ab3d6d71f496a2300 --- /dev/null +++ b/manifests/9f/github.com__alexploner__cfdr.pleio.json @@ -0,0 +1,93 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/alexploner/cfdr.pleio", + "url": "https://github.com/alexploner/cfdr.pleio", + "host": "github.com", + "commit": "76d5085e6d3f3ca9576d5d7564d2acf11bcfd021", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE.md", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE.md", + "sha256": "585e25ef8f5946a52bf2aed68d5becfc38be94a8663aa01c1b31d88aa57f1de3", + "language": "License", + "lines": 595, + "truncated": false, + "block": 2, + "row": 1157 + }, + { + "path": "R/SparseSmooth2d.R", + "sha256": "d5a7dc6cd06b142d23431dd50b04521433a2bc3649525b6214d31683a8271626", + "language": "R", + "lines": 124, + "truncated": false, + "block": 2, + "row": 2317 + }, + { + "path": "R/cfdr_pleio.R", + "sha256": "2c4c0c3444902b915cb3c1821333a1f1635f2d979520f0cc268849b8d547e289", + "language": "R", + "lines": 724, + "truncated": false, + "block": 2, + "row": 2373 + }, + { + "path": "R/refdata.R", + "sha256": "b92909be8f118be81980cb3e9256ca661aa87b8f3bf2bf27cde63bd6317d9281", + "language": "R", + "lines": 119, + "truncated": false, + "block": 2, + "row": 2288 + }, + { + "path": "R/utils.R", + "sha256": "2a8f539183c006dda9b412b0493ccf3f6e8153b1d8a737c24e787af4bcedc8a4", + "language": "R", + "lines": 103, + "truncated": false, + "block": 2, + "row": 2284 + }, + { + "path": "README.md", + "sha256": "794043cb07e3b67d9d0e4a8dae5f8a5204b6292c8c1eab4f5f303278275eb4c4", + "language": "Text", + "lines": 38, + "truncated": false, + "block": 2, + "row": 2597 + }, + { + "path": "vignettes/Implementation.Rmd", + "sha256": "1e3eec48b9ae14a7c2398c65ae23328ec69cdc9e1965d61b1d76c04ffaeba801", + "language": "R", + "lines": 39, + "truncated": false, + "block": 2, + "row": 2272 + }, + { + "path": "vignettes/Introduction.Rmd", + "sha256": "73f01549a2f4bc2381dc46dc0e31e742d1a55f80694d1c77e6c6416d31422feb", + "language": "R", + "lines": 344, + "truncated": false, + "block": 2, + "row": 2361 + }, + { + "path": "vignettes/precompile.R", + "sha256": "3ea34645752df4e480f1d984028cdb0c574088ec1832bf721bbb461cb513e14c", + "language": "R", + "lines": 14, + "truncated": false, + "block": 2, + "row": 2254 + } + ] +} \ No newline at end of file diff --git a/manifests/9f/github.com__unity-physics__fw-minimorph.json b/manifests/9f/github.com__unity-physics__fw-minimorph.json new file mode 100644 index 0000000000000000000000000000000000000000..563a7e2a62b12a7c03b33f62cd2a3d43a0e236ea --- /dev/null +++ b/manifests/9f/github.com__unity-physics__fw-minimorph.json @@ -0,0 +1,129 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/unity-physics/fw-minimorph", + "url": "https://github.com/UNITY-Physics/fw-minimorph", + "host": "github.com", + "commit": "08c7398e42c88031da40ae84941214aa6b4a0299", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "5517420fd98e4e33b477c7cbd2227e7e59628819b65d8e8ad44b7b0d7056b3eb", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2170 + }, + { + "path": "README.md", + "sha256": "478bbcbcfef0f19365da174b5ef82481109bdf437ba7e2d26b818d21c53e7306", + "language": "Text", + "lines": 173, + "truncated": false, + "block": 1, + "row": 11929 + }, + { + "path": "app/main.sh", + "sha256": "908ca624080e8c4a5b0654518fbf873640f2e9a054160e83fdf75fa462cfddf2", + "language": "Shell", + "lines": 335, + "truncated": false, + "block": 1, + "row": 11752 + }, + { + "path": "interactive-run.sh", + "sha256": "c92581cc1dcf26aede934ac994aee25f69cda8b346f5b5d6b0ccabb2aecce01b", + "language": "Shell", + "lines": 23, + "truncated": false, + "block": 1, + "row": 11585 + }, + { + "path": "run.py", + "sha256": "3cc2c7f4a3ae13e68eb9a49007ee299406d9b1f998fababd77080837077e6021", + "language": "Python", + "lines": 54, + "truncated": false, + "block": 1, + "row": 6142 + }, + { + "path": "utils/Inspect_segmentations.py", + "sha256": "493314340919184ccd3e16374f4bf328ba89c0c5966d430a1dcef40afe3699ed", + "language": "Python", + "lines": 158, + "truncated": false, + "block": 1, + "row": 7883 + }, + { + "path": "utils/__init__.py", + "sha256": "f50b88680cef99cedee54d1010db51271a4bfcd11f2b6c76baf4d19e79f29da4", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 1, + "row": 5031 + }, + { + "path": "utils/command_line.py", + "sha256": "941f6251e1565d19c5c3e1dfa55aa0a0552827752bfcbb471cce36c22498222b", + "language": "Python", + "lines": 193, + "truncated": false, + "block": 1, + "row": 8026 + }, + { + "path": "utils/context.py", + "sha256": "03713fb2b1f9d673087e46679f7d1b25b28f4d216714e45c54b2f8084fa94895", + "language": "Python", + "lines": 874, + "truncated": false, + "block": 1, + "row": 9660 + }, + { + "path": "utils/generate_command.py", + "sha256": "2aaf8de8be5ef3f4fe0611e0d3fa17256033d68da540a299fd73e64fcec2ea55", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 1, + "row": 6665 + }, + { + "path": "utils/join_data.py", + "sha256": "78af2e40b14491222a9c1f83a237c2d41c5a39f789f287e14e477847188df2f7", + "language": "Python", + "lines": 37, + "truncated": false, + "block": 1, + "row": 5917 + }, + { + "path": "utils/parser.py", + "sha256": "d3543929781ef95082c34bd83c91ec81d753f8fb51ba1f9502f4d13f0a7656f4", + "language": "Python", + "lines": 69, + "truncated": false, + "block": 1, + "row": 6430 + }, + { + "path": "utils/tests/unit_test.sh", + "sha256": "e2a19f397440953f79cda35dd362e91a917adde4fa595d376d17a912181e6ba7", + "language": "Shell", + "lines": 45, + "truncated": false, + "block": 1, + "row": 11712 + } + ] +} \ No newline at end of file diff --git a/manifests/a1/github.com__allenneuraldynamics__aind-ephys-curation.json b/manifests/a1/github.com__allenneuraldynamics__aind-ephys-curation.json new file mode 100644 index 0000000000000000000000000000000000000000..4902c31ad8931cef43b5316d90e5443c81e895c0 --- /dev/null +++ b/manifests/a1/github.com__allenneuraldynamics__aind-ephys-curation.json @@ -0,0 +1,39 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/allenneuraldynamics/aind-ephys-curation", + "url": "https://github.com/AllenNeuralDynamics/aind-ephys-curation", + "host": "github.com", + "commit": "118e17d5c0275baf2ff712934b51ce76db74b884", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "d7609c858f47823b9d7cee46253bffc40e93fd55effa744aa249e97a603c65cb", + "language": "License", + "lines": 21, + "truncated": false, + "block": 2, + "row": 1139 + }, + { + "path": "README.md", + "sha256": "3e6a547fb689b02d0e791548fb45726d4cd4666bf2f661c694c9c2d01fbcb747", + "language": "Text", + "lines": 48, + "truncated": false, + "block": 2, + "row": 2602 + }, + { + "path": "code/run_capsule.py", + "sha256": "7216759a63e399faf160e6c13983eaa54febdb634f3ca990adf37a24b8ef4120", + "language": "Python", + "lines": 408, + "truncated": false, + "block": 2, + "row": 2149 + } + ] +} \ No newline at end of file diff --git a/manifests/a1/github.com__lrpz__vascumap.json b/manifests/a1/github.com__lrpz__vascumap.json new file mode 100644 index 0000000000000000000000000000000000000000..7aef02cc565fd576c898928b9c3e5e2ed3ffd6e4 --- /dev/null +++ b/manifests/a1/github.com__lrpz__vascumap.json @@ -0,0 +1,93 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/lrpz/vascumap", + "url": "https://github.com/LRpz/VascuMap", + "host": "github.com", + "commit": "daee1647eaf4c78262bc68afd7e6f2d29beecf5c", + "license": "CC-BY-NC-4.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "with_conditions", + "files": [ + { + "path": "LICENSE", + "sha256": "db2e35513dbadcdc67f5819a3bfee2777786538dd3531620cd5fbd4b6ed6e538", + "language": "License", + "lines": 407, + "truncated": false, + "block": 1, + "row": 2225 + }, + { + "path": "README.md", + "sha256": "26f4151965453c67fa53aa9822d7b5f2bb97b59d01c7ca5ec86a491b82ac9aa2", + "language": "Text", + "lines": 99, + "truncated": false, + "block": 1, + "row": 11895 + }, + { + "path": "setup.py", + "sha256": "ac6dd75c317aed3ae3f967719375caad6ab5cb523e61e296fcfbe7ae4e27a754", + "language": "Python", + "lines": 29, + "truncated": false, + "block": 1, + "row": 5471 + }, + { + "path": "src/dataset.py", + "sha256": "7a1417936fafe7353ff5e232415f9d198e54a7f2126baefd0ee080892512270b", + "language": "Python", + "lines": 129, + "truncated": false, + "block": 1, + "row": 7224 + }, + { + "path": "src/graph_metrics.py", + "sha256": "7ec22f6d84c276b02332dad4f88e51c0965175982bd35a534017a74e7d4d7fb3", + "language": "Python", + "lines": 420, + "truncated": false, + "block": 1, + "row": 9181 + }, + { + "path": "src/inference.py", + "sha256": "8d226c357b01e8cf58d9f680f1f09d62e12aea4b4ecd5839104edcf8358234e8", + "language": "Python", + "lines": 124, + "truncated": false, + "block": 1, + "row": 7595 + }, + { + "path": "src/model_utils.py", + "sha256": "d8795010ec2fea098ae8df44b22e520e093f15754d00c459c88229307db83c83", + "language": "Python", + "lines": 155, + "truncated": false, + "block": 1, + "row": 7621 + }, + { + "path": "src/training.py", + "sha256": "d2b2c5ecb747147593e18c2d0ceb5bfa3fe77c582362bb1aee371d49ea7d1b8c", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 1, + "row": 6991 + }, + { + "path": "src/transforms.py", + "sha256": "d8ba5e36700f0d19c9af058ed752fdb437c156f81650ab42b16ab82e618e844b", + "language": "Python", + "lines": 92, + "truncated": false, + "block": 1, + "row": 6580 + } + ] +} \ No newline at end of file diff --git a/manifests/a1/github.com__ut-yakusaku__yamashiro-elife-2024.json b/manifests/a1/github.com__ut-yakusaku__yamashiro-elife-2024.json new file mode 100644 index 0000000000000000000000000000000000000000..51c9e8a42eefd703cd981a4ebc61332773eb0cc6 --- /dev/null +++ b/manifests/a1/github.com__ut-yakusaku__yamashiro-elife-2024.json @@ -0,0 +1,93 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/ut-yakusaku/yamashiro-elife-2024", + "url": "https://github.com/UT-yakusaku/Yamashiro-eLife-2024", + "host": "github.com", + "commit": "35d0551cf4740cc20ddf8e66058a2126c5f564dc", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "ecbc5c729281853eed6a2b9e5ceeb19b56dec367b63894ebb45a4eb6cf83d122", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2145 + }, + { + "path": "README.md", + "sha256": "aec42b6b261b50d15fd163fd054b9e6773859fa634798570a1e88331b8621b76", + "language": "Text", + "lines": 42, + "truncated": false, + "block": 1, + "row": 11797 + }, + { + "path": "main.py", + "sha256": "f189c687dec3ddaf5cc7aa3903831d8d94cb677be8353aa29e36487439ba94b0", + "language": "Python", + "lines": 55, + "truncated": false, + "block": 1, + "row": 6092 + }, + { + "path": "models/__init__.py", + "sha256": "fed2bc8a0cad5f86c2c3f9554346ec9dd5e11109f0d3130aaf97dce16c488d90", + "language": "Python", + "lines": 2, + "truncated": false, + "block": 1, + "row": 5061 + }, + { + "path": "models/lightningmodel.py", + "sha256": "1a16e6a7d5dba9905846b6bf6ad907f5f5b02c9b238a12924e641108601e4d3a", + "language": "Python", + "lines": 115, + "truncated": false, + "block": 1, + "row": 7292 + }, + { + "path": "models/resnet.py", + "sha256": "c9a2e3412372d2e527fb04a7b05e72be4dc51799abd7003a39eae33bfb6b7b60", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 1, + "row": 6874 + }, + { + "path": "trainer.py", + "sha256": "98cc4ff699760da749737273a7dac599507d9bfb55ca8b7922a1ec077d9cd409", + "language": "Python", + "lines": 342, + "truncated": false, + "block": 1, + "row": 8670 + }, + { + "path": "utils/__init__.py", + "sha256": "9ced5c3fe2b03ead3d7d712413c0f736892ae72482c194dffa55398ba33f9df2", + "language": "Python", + "lines": 1, + "truncated": false, + "block": 1, + "row": 4992 + }, + { + "path": "utils/dataloader.py", + "sha256": "7dde1849c7fed559dea05cc56acdd8a17d347a2a02b8ee0f782eb0b0c67c902f", + "language": "Python", + "lines": 87, + "truncated": false, + "block": 1, + "row": 6930 + } + ] +} \ No newline at end of file diff --git a/manifests/a2/github.com__aim97__visual-brain-study.json b/manifests/a2/github.com__aim97__visual-brain-study.json new file mode 100644 index 0000000000000000000000000000000000000000..01b00e8545adce9a0cd4bf0595288335f00c46ac --- /dev/null +++ b/manifests/a2/github.com__aim97__visual-brain-study.json @@ -0,0 +1,516 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/aim97/visual-brain-study", + "url": "https://github.com/aim97/Visual-brain-study", + "host": "github.com", + "commit": "fa800f425e9cadc8a7ef4c5e89c2ee59ec7be48b", + "license": "GPL-3.0", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", + "language": "License", + "lines": 674, + "truncated": false, + "block": 1, + "row": 2235 + }, + { + "path": "models/ATCNet.py", + "sha256": "f2b0acd56abb42cee7478f2d67aca353882ecac5e25c8fb02a451c2f1f341642", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5319 + }, + { + "path": "models/AttnSleep.py", + "sha256": "c8b130bc05af6d4adb2e6193ac92881a67157a70ed80d485f8c5534b942bcad5", + "language": "Python", + "lines": 402, + "truncated": false, + "block": 1, + "row": 8800 + }, + { + "path": "models/BrainDecoder.py", + "sha256": "99327c859842c13469a316b72083781b6f37a073a174af77eb0cd08ed168c205", + "language": "Python", + "lines": 91, + "truncated": false, + "block": 1, + "row": 6716 + }, + { + "path": "models/CNN_LSTM.py", + "sha256": "135f2c7a87528f04a0d6d0f7a1d1662aaaf01130feaff3d7a496be2c5e202112", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 1, + "row": 6227 + }, + { + "path": "models/DCTVIT.py", + "sha256": "ee1067dd0dbf30c4c78bc3a165917ecfe1b4cc04e41a332d8e3e63f91f8eda8d", + "language": "Python", + "lines": 140, + "truncated": false, + "block": 1, + "row": 7285 + }, + { + "path": "models/EEGChannelNet.py", + "sha256": "bae5490172df7c99604680da0e93c94f787fab3b753d4838c00393b09e985bf6", + "language": "Python", + "lines": 172, + "truncated": false, + "block": 1, + "row": 7538 + }, + { + "path": "models/EEGConformer.py", + "sha256": "7ae16b3d9140742c1368c16412428a5a33650423971f95b39e49e13d5381202e", + "language": "Python", + "lines": 17, + "truncated": false, + "block": 1, + "row": 5328 + }, + { + "path": "models/EEGNET.py", + "sha256": "c5e36df0e7b69d80ea71c0d640316e62110ac43fce5ccd6ec8fc10fcb413ce6a", + "language": "Python", + "lines": 71, + "truncated": false, + "block": 1, + "row": 6371 + }, + { + "path": "models/EEGViT.py", + "sha256": "fc036704a8f78ec4ca7223316ef7c9d6431088791cd9116062d4678afe30a145", + "language": "Python", + "lines": 277, + "truncated": false, + "block": 1, + "row": 8397 + }, + { + "path": "models/FusedBrainDecoder3D.py", + "sha256": "2ea092fd494b114c15ae793dbf3f8b70ca65fc1bc13d450142955c77b7945324", + "language": "Python", + "lines": 23, + "truncated": false, + "block": 1, + "row": 5566 + }, + { + "path": "models/NeuroStream.py", + "sha256": "1dca79f7454a574cbc1f812ec027151e479bf159266056e31817a99ae4b88a00", + "language": "Python", + "lines": 233, + "truncated": false, + "block": 1, + "row": 8051 + }, + { + "path": "models/NeuroStream4D.py", + "sha256": "964f9df453943dd24653e6c9511df8ac56dc933f000d7718e0e2e8aa502d8aff", + "language": "Python", + "lines": 78, + "truncated": false, + "block": 1, + "row": 6687 + }, + { + "path": "models/SleepingPower.py", + "sha256": "f4083b508a4ed0dbafba2f18f14954a703544833e3c12e0bd5d45054581c85bb", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 1, + "row": 6399 + }, + { + "path": "models/SyncNet.py", + "sha256": "cf804c7f25b6a88fdf56c7c3c92aa4793675311b899fd0887549d4cb020616bd", + "language": "Python", + "lines": 15, + "truncated": false, + "block": 1, + "row": 5274 + }, + { + "path": "models/TemporalMap.py", + "sha256": "d7f2f66fbca1da8d67c0f2668fecc685af46aaffa0003c89a27c09d076e9ad09", + "language": "Python", + "lines": 176, + "truncated": false, + "block": 1, + "row": 7514 + }, + { + "path": "models/VisualOnlyClassifier.py", + "sha256": "f8fd32a6a232946f6f789c7c6f8ff76c1ddf08ab068e5ee792fb60149ee1632b", + "language": "Python", + "lines": 28, + "truncated": false, + "block": 1, + "row": 5593 + }, + { + "path": "models/VisualTransforms.py", + "sha256": "1aae58cefb71df3d19ece885b611284abd87a984468026bb3cf93832483a33bb", + "language": "Python", + "lines": 395, + "truncated": false, + "block": 1, + "row": 9005 + }, + { + "path": "models/__init__.py", + "sha256": "1d827ae411d807038a5416ea715d49cefcd7767a449b0e8ef86641040ffc34c9", + "language": "Python", + "lines": 14, + "truncated": false, + "block": 1, + "row": 5456 + }, + { + "path": "models/blstm.py", + "sha256": "132f4141d9377cb8fca22d310b53ade8cf6b022289d43499e80610bcd3641607", + "language": "Python", + "lines": 36, + "truncated": false, + "block": 1, + "row": 5846 + }, + { + "path": "models/layers.py", + "sha256": "47a64248474b736926f23afe413d0eff8f84797c7a7d9073cca8662c2807c0b0", + "language": "Python", + "lines": 145, + "truncated": false, + "block": 1, + "row": 7178 + }, + { + "path": "models/lstm.py", + "sha256": "5c401d7e1e4803615616f68894bc56f6419b7785cbcf705aad7aa999250a2bbd", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 1, + "row": 6168 + }, + { + "path": "models/meta/electrode_names.py", + "sha256": "9112bfc78612a9c410c77c1c5740976c6377541d18cac83fd89a9e77910e52fb", + "language": "Python", + "lines": 132, + "truncated": false, + "block": 1, + "row": 6869 + }, + { + "path": "models/registery.py", + "sha256": "40cdb8b761afe9847f838c875fbd5e572270b1780dc65718bc030beb8b810975", + "language": "Python", + "lines": 32, + "truncated": false, + "block": 1, + "row": 5764 + }, + { + "path": "models/regressor.py", + "sha256": "4c41f29f34a47eb8f05f3269128818ea716e48178338a9734ee51d3e8fac5d31", + "language": "Python", + "lines": 53, + "truncated": false, + "block": 1, + "row": 5964 + }, + { + "path": "models/utils.py", + "sha256": "1b1da71f7bb62b75495b455180ec68741244df56e4230044aefb39d112ff6fb0", + "language": "Python", + "lines": 141, + "truncated": false, + "block": 1, + "row": 7344 + }, + { + "path": "models/visualModels.py", + "sha256": "496ac1212ee304620496bf49f3ad52173faa6b2beecf1d375ff4b1b45715b4ba", + "language": "Python", + "lines": 200, + "truncated": false, + "block": 1, + "row": 7939 + }, + { + "path": "run.sh", + "sha256": "0e22342dcc39395aee4d96416b725739a5ecd2a753e30ca8cf35b5349f54809b", + "language": "Shell", + "lines": 30, + "truncated": false, + "block": 1, + "row": 11593 + }, + { + "path": "scripts/aggregate-results.py", + "sha256": "56dd4465c797e71040dc35bcb8c3cf8fe1782a7e7a879f20384f2dc3b47cc502", + "language": "Python", + "lines": 100, + "truncated": false, + "block": 1, + "row": 7044 + }, + { + "path": "scripts/bias-analysis.py", + "sha256": "6005520297b15178ba7a084c81d098d4402f7b77faaa382f6262597b62527126", + "language": "Python", + "lines": 366, + "truncated": false, + "block": 1, + "row": 8820 + }, + { + "path": "scripts/build_semantic_dataset.py", + "sha256": "d79cfe0d8fe7a1c57bd7b3ea2d935eedccdb03aa30867ef35b8e3f905e2a44df", + "language": "Python", + "lines": 95, + "truncated": false, + "block": 1, + "row": 6544 + }, + { + "path": "scripts/eeg_semantic_classification.py", + "sha256": "c8c1bb6f6dcb70560eae1f9b20ad641d26a48054a3a7778964648768255a7a77", + "language": "Python", + "lines": 205, + "truncated": false, + "block": 1, + "row": 7851 + }, + { + "path": "scripts/eeg_separate_classification.py", + "sha256": "adca0bfa6646e9d3b7bcb5bdcd8fbe1758bd3ef8005642d85af2fa17a3144a3c", + "language": "Python", + "lines": 262, + "truncated": false, + "block": 1, + "row": 8274 + }, + { + "path": "scripts/eeg_signal_classification.py", + "sha256": "70724336ed17b3761bcde5f0ebeb92b5eda39bc34083852d5069e4f82b54a7f0", + "language": "Python", + "lines": 217, + "truncated": false, + "block": 1, + "row": 7949 + }, + { + "path": "scripts/evaluate_models.py", + "sha256": "7a6d480192c65ad45f9c121a6ff344fd76e0a3389467b93a1f72f72b53f80d2e", + "language": "Python", + "lines": 128, + "truncated": false, + "block": 1, + "row": 7174 + }, + { + "path": "scripts/generate-freqdistribution.py", + "sha256": "94b628b98a00c231438a1fda37231c6ac6c40d6467d94070ec118314b95a7b31", + "language": "Python", + "lines": 73, + "truncated": false, + "block": 1, + "row": 6151 + }, + { + "path": "scripts/generate_class_splits.py", + "sha256": "e319d65d54d7588985bd7ac7b90cb3d3badb913988ec9e47b2d7deeefadf178f", + "language": "Python", + "lines": 82, + "truncated": false, + "block": 1, + "row": 6220 + }, + { + "path": "scripts/generate_semantic_splits.py", + "sha256": "bf50250676f0393146ba10f5edfb555a156bf59e49a3b026c61330e94fbce213", + "language": "Python", + "lines": 58, + "truncated": false, + "block": 1, + "row": 6045 + }, + { + "path": "scripts/generate_separation_splits.py", + "sha256": "339579ea7c335d79ddcd3b1fec2498cd0f981cdfcb45c9370d0bf6e619fee978", + "language": "Python", + "lines": 118, + "truncated": false, + "block": 1, + "row": 6841 + }, + { + "path": "scripts/generate_session_splits.py", + "sha256": "d00fb96b7d7ccd920a84c91ca2447d3d953d0acb46894918da84adcabe343a80", + "language": "Python", + "lines": 72, + "truncated": false, + "block": 1, + "row": 6197 + }, + { + "path": "scripts/generate_spec_samples.py", + "sha256": "a6b5d1251d057b5e9e0604f4bae3262a7e0a63e383f516a4708659947f229907", + "language": "Python", + "lines": 50, + "truncated": false, + "block": 1, + "row": 5851 + }, + { + "path": "scripts/select_semantic_testset.py", + "sha256": "9b497f02b3836725cc7d2fc4913ab2923fb075f31d1cbb58523f185a75a710ce", + "language": "Python", + "lines": 237, + "truncated": false, + "block": 1, + "row": 8171 + }, + { + "path": "scripts/semantic-classification.py", + "sha256": "6a20b1ddff2db77ee3539e0e101d75dabc30c434ddee49ed5c37b0b674ed5b74", + "language": "Python", + "lines": 90, + "truncated": false, + "block": 1, + "row": 6658 + }, + { + "path": "scripts/semantic-distribution.py", + "sha256": "0596f53162a6c9689bd14744be2ef8ec945611c35a32a34be27b4efa31c0f2d2", + "language": "Python", + "lines": 106, + "truncated": false, + "block": 1, + "row": 6492 + }, + { + "path": "scripts/semantic_categories_rel_analysis.py", + "sha256": "9be05214019b6d51ec5fb7119f5a910b97f70aa88e3fc2e6619e177bae45ade6", + "language": "Python", + "lines": 123, + "truncated": false, + "block": 1, + "row": 7136 + }, + { + "path": "scripts/separate-classification.py", + "sha256": "1f033f4432bb6fd44d83c6da4b35d764dd1e1ff9507d15b04ee97f135779a4bb", + "language": "Python", + "lines": 128, + "truncated": false, + "block": 1, + "row": 7327 + }, + { + "path": "scripts/spec-test.py", + "sha256": "52c3ee83bf73fbbb9e5220112e8f996adbe596eaefcf6fbbe00d0547f6b4b7fd", + "language": "Python", + "lines": 169, + "truncated": false, + "block": 1, + "row": 7603 + }, + { + "path": "scripts/standard-classification.py", + "sha256": "12fc4f4ca43fb8c38edfbe87306925b049890ea16359f29b84c9887647964d9e", + "language": "Python", + "lines": 70, + "truncated": false, + "block": 1, + "row": 6431 + }, + { + "path": "scripts/summarize-model.py", + "sha256": "4967183c188e6c045a6f2577f58de98922e4e85f6dc76c00929f8b06c6bb0d69", + "language": "Python", + "lines": 34, + "truncated": false, + "block": 1, + "row": 5661 + }, + { + "path": "utils/EEGDataset.py", + "sha256": "59a094b05f0a21587f7e676863659f2285584d718e7b45b3e52986ca3f6eaa66", + "language": "Python", + "lines": 88, + "truncated": false, + "block": 1, + "row": 6490 + }, + { + "path": "utils/Splitter.py", + "sha256": "5b5b9b0f0996411047dbea3a97c94d084c012471deba47b141823ab37f69d7a2", + "language": "Python", + "lines": 60, + "truncated": false, + "block": 1, + "row": 6062 + }, + { + "path": "utils/ValidationOnlySplitter.py", + "sha256": "712a91335ef0d87f6e8ecc206729ac46d529f689e6d0a0a0ae974c5ba3e1b992", + "language": "Python", + "lines": 35, + "truncated": false, + "block": 1, + "row": 5679 + }, + { + "path": "utils/__init__.py", + "sha256": "a62ac3a821958659cbdb40d00c6a429d8e6ee4e08977f695061cba4fb9b771ca", + "language": "Python", + "lines": 4, + "truncated": false, + "block": 1, + "row": 5081 + }, + { + "path": "utils/evaluation-metrics.py", + "sha256": "614d7644906bed542b2752b42beafb6dbbb7a6c6de1e0554037835819030bb5e", + "language": "Python", + "lines": 49, + "truncated": false, + "block": 1, + "row": 6006 + }, + { + "path": "utils/lib.py", + "sha256": "15698ed51443be85d3cb378fd4032792b3f8ecef162dc6b75b367033e0772d01", + "language": "Python", + "lines": 515, + "truncated": false, + "block": 1, + "row": 9062 + }, + { + "path": "utils/train-urils.py", + "sha256": "1a13a6524c34f5a53d79c3b721c04d064f98f7ff3bbbf93f20579299f2af399d", + "language": "Python", + "lines": 138, + "truncated": false, + "block": 1, + "row": 7543 + } + ] +} \ No newline at end of file diff --git a/manifests/a2/github.com__andrewslabucsf__crs-analysis.json b/manifests/a2/github.com__andrewslabucsf__crs-analysis.json new file mode 100644 index 0000000000000000000000000000000000000000..32ee2a59d64125f07cf486cb7ba5c7e2f3d72efd --- /dev/null +++ b/manifests/a2/github.com__andrewslabucsf__crs-analysis.json @@ -0,0 +1,66 @@ +{ + "format": "oscr-script-manifest/1", + "repository": "github.com/andrewslabucsf/crs-analysis", + "url": "https://github.com/AndrewsLabUCSF/CRS-analysis", + "host": "github.com", + "commit": "aea67caca4b114ff2aa32bb4bf5d244127574e7b", + "license": "MIT", + "license_confirmed_by": "license file LICENSE", + "redistribution": "yes", + "files": [ + { + "path": "LICENSE", + "sha256": "1a6aa840e80ec39863d9247eb0a50a5210aa4c92ab520975fef713a3f48e8820", + "language": "License", + "lines": 21, + "truncated": false, + "block": 1, + "row": 2100 + }, + { + "path": "README.md", + "sha256": "94596f902158e02ec22011667cfe55fa0ae224e54c8ed6b5602f53731d84c199", + "language": "Text", + "lines": 154, + "truncated": false, + "block": 1, + "row": 11874 + }, + { + "path": "workflow/scripts/crs_analysis.qmd", + "sha256": "4ee8305c3845f8f87a12b45b26cd2671a80b5d0842d9db88c9e2d0defdaa6334", + "language": "Quarto", + "lines": 2407, + "truncated": false, + "block": 1, + "row": 9894 + }, + { + "path": "workflow/scripts/crs_standardization.qmd", + "sha256": "5920a917fcd0930589655b768a4cb45064cbfd6466477cb0204e0f72ac0c5806", + "language": "Quarto", + "lines": 471, + "truncated": false, + "block": 1, + "row": 9893 + }, + { + "path": "workflow/scripts/cutoff_analysis.qmd", + "sha256": "5cdc531a041257df50c26406364c923d21ff684d143da47775eee795837edecd", + "language": "Quarto", + "lines": 401, + "truncated": false, + "block": 1, + "row": 9890 + }, + { + "path": "workflow/scripts/imputation.qmd", + "sha256": "9bf93c762594512c935f4d6118dc833d8aef2c94db3f28c47d2bdb355da4a85a", + "language": "Quarto", + "lines": 472, + "truncated": false, + "block": 1, + "row": 9891 + } + ] +} \ No newline at end of file