{ "format": "oscr-script-manifest/1", "repository": "github.com/aswendt-lab/aidamri", "url": "https://github.com/Aswendt-Lab/AIDAmri", "host": "github.com", "commit": "e12eb8271bf9b1eca6069808d9d1ba08e421c362", "license": "GPL-3.0", "license_confirmed_by": "license file LICENSE", "redistribution": "yes", "files": [ { "path": "ARA/AllenBrainAPI-master/DownloadImageSeries.m", "sha256": "d824f5de5eec5c33288565f02171738725e2cb55b6bf78122b474b4465291ce4", "language": "MATLAB", "lines": 61, "truncated": false, "block": 1, "row": 3134 }, { "path": "ARA/AllenBrainAPI-master/acronym2structureID.m", "sha256": "653a1d0eb8d6d154b1d6f775f3467193c478c6776d649a089e853b4733e88bd6", "language": "MATLAB", "lines": 71, "truncated": false, "block": 1, "row": 3034 }, { "path": "ARA/AllenBrainAPI-master/examples/thalamus.m", "sha256": "71494e1a643fc71b66f770feffff376d74ca0873607549d1bb00a557def29a20", "language": "MATLAB", "lines": 77, "truncated": false, "block": 1, "row": 3382 }, { "path": "ARA/AllenBrainAPI-master/findAllenExperiments.m", "sha256": "e4d1b1056c7fb0b906feb9b68bad372cafa868a31dd0c3b85d5e4dfb2dd71272", "language": "MATLAB", "lines": 102, "truncated": false, "block": 1, "row": 3288 }, { "path": "ARA/AllenBrainAPI-master/getAllenStructureList.m", "sha256": "095d48f862cab1ad31101afc8a15a6bf60da2851d97ed0cdcc2647da9d2bcf76", "language": "MATLAB", "lines": 283, "truncated": false, "block": 1, "row": 4054 }, { "path": "ARA/AllenBrainAPI-master/getInjectionIDfromExperiment.m", "sha256": "6c43f15acc70e1f1f8c7416c71991ef124f8252d11aa84d64c915cd0803a1de0", "language": "MATLAB", "lines": 71, "truncated": false, "block": 1, "row": 3166 }, { "path": "ARA/AllenBrainAPI-master/getProjectionDataFromExperiment.m", "sha256": "755452435904cce08434074cee8e8dc24185bf9491a373689b6bb42c48769383", "language": "MATLAB", "lines": 94, "truncated": false, "block": 1, "row": 3287 }, { "path": "ARA/AllenBrainAPI-master/name2structureID.m", "sha256": "590ed1ad7ae4574df31e9f24e8b8e1d73ef8c39931a4ebbc5b0fff541bf73a41", "language": "MATLAB", "lines": 71, "truncated": false, "block": 1, "row": 3008 }, { "path": "ARA/AllenBrainAPI-master/structureID2name.m", "sha256": "38ec7b25a754333b390439fead4ddf622ecf85d000458b7121c24920dc37c6b2", "language": "MATLAB", "lines": 82, "truncated": false, "block": 1, "row": 3168 }, { "path": "ARA/download_ARA.py", "sha256": "2a82a95a0f72f2cf4d1c2b83ece8806ccd6e707135c4e1188fbb6966ac65bff4", "language": "Python", "lines": 85, "truncated": false, "block": 1, "row": 6607 }, { "path": "ARA/getParentalARA.m", "sha256": "5c01e565026762d09fa14b5ec97bfd16120f68e736b0bed4822553325732a7e1", "language": "MATLAB", "lines": 31, "truncated": false, "block": 1, "row": 2870 }, { "path": "ARA/readXML_Lables.m", "sha256": "db56b94d8c88ef3e52bb3da60d20aa7547c3f80cc93f88a5b318ce445daabdd3", "language": "MATLAB", "lines": 8, "truncated": false, "block": 1, "row": 2446 }, { "path": "LICENSE", "sha256": "3972dc9744f6499f0f9b2dbf76696f2ae7ad8af9b23dde66d6af86c9dfb36986", "language": "License", "lines": 674, "truncated": false, "block": 1, "row": 2235 }, { "path": "README.md", "sha256": "4b6706eee9a03e323ac1a63c68d4c25249f447c2f742333b12ea680fd6da871a", "language": "Text", "lines": 310, "truncated": false, "block": 1, "row": 11981 }, { "path": "bin/2.1_T2PreProcessing/MICO.py", "sha256": "e0ee852f10621a35e473f9f6bc2592df91af4fa8a4f72acdf65e9eb98c64b0be", "language": "Python", "lines": 123, "truncated": false, "block": 1, "row": 6765 }, { "path": "bin/2.1_T2PreProcessing/applyMICO.py", "sha256": "d8f9b685b52e2bde1663ca30cee7da3a561f8f09face80c0ed1688f466f1517c", "language": "Python", "lines": 277, "truncated": false, "block": 1, "row": 8151 }, { "path": "bin/2.1_T2PreProcessing/preProcessing_T2.py", "sha256": "f5e11d36bf7d936f8d466b3c678831490e3e9cdb961e61be32f1e051ddba2d50", "language": "Python", "lines": 307, "truncated": false, "block": 1, "row": 8495 }, { "path": "bin/2.1_T2PreProcessing/registration_T2.py", "sha256": "0d84ff43e6a9c57566b8c2907e2b403810b415f03e4a86394800941682f6b41d", "language": "Python", "lines": 293, "truncated": false, "block": 1, "row": 8935 }, { "path": "bin/2.1_T2PreProcessing/t2_value_extraction.py", "sha256": "6110a533844aa19fc7e3c1bc741dc12cf89a1fd3f0b79d36c4653a14c7187ed0", "language": "Python", "lines": 139, "truncated": false, "block": 1, "row": 7713 }, { "path": "bin/2.2_DTIPreProcessing/MICO.py", "sha256": "f5b9d8c960c404c0a3f61684aba8b63f23aeff0c62ab48e3610e81ff7908e602", "language": "Python", "lines": 120, "truncated": false, "block": 1, "row": 6715 }, { "path": "bin/2.2_DTIPreProcessing/anisodiff.py", "sha256": "b101f2c5321eaace711861bdf962de5735845c5bf94c88be23773f47bd9cfe1b", "language": "Python", "lines": 87, "truncated": false, "block": 1, "row": 6647 }, { "path": "bin/2.2_DTIPreProcessing/applyMICO.py", "sha256": "eb75be482649bb7dbfe36b096fe2dd94f080f417941a0c58c6816259faa51f97", "language": "Python", "lines": 260, "truncated": false, "block": 1, "row": 8046 }, { "path": "bin/2.2_DTIPreProcessing/averageb0.py", "sha256": "9c59fea6a9a9aaa32e378e48ec002fb644018cc7e02bf879f77f87cd74f4f188", "language": "Python", "lines": 131, "truncated": false, "block": 1, "row": 7582 }, { "path": "bin/2.2_DTIPreProcessing/extracted_brain_output.py", "sha256": "45ba92e9e91641fc21138de7f26130b058a4b5cd2ce433ffdb6445affaa453bf", "language": "Python", "lines": 45, "truncated": false, "block": 1, "row": 5999 }, { "path": "bin/2.2_DTIPreProcessing/preProcessing_DTI.py", "sha256": "8bf8d70c92171f2e3c1316800d5ee6c83f99d208378aee024eea4e5419c6b04c", "language": "Python", "lines": 570, "truncated": false, "block": 1, "row": 9330 }, { "path": "bin/2.2_DTIPreProcessing/registration_DTI.py", "sha256": "8b8d6416890ca588d5ae3ddb3c7f9014638864235485c2aa22f5c88b2f02dcc7", "language": "Python", "lines": 395, "truncated": false, "block": 1, "row": 9241 }, { "path": "bin/2.3_fMRIPreProcessing/preProcessing_fMRI.py", "sha256": "0b826a3afe640736fbdfb3e98efef27844563f2852c0f00f524d1db348622494", "language": "Python", "lines": 294, "truncated": false, "block": 1, "row": 8540 }, { "path": "bin/2.3_fMRIPreProcessing/registration_rsfMRI.py", "sha256": "93c0db466d66ba911191bc90ce08873da5c90855b2c3605aca2a74ca68c76cf7", "language": "Python", "lines": 380, "truncated": false, "block": 1, "row": 9252 }, { "path": "bin/3.1_T2Processing/brummerSNR.py", "sha256": "f8930da88658cae9c1bb987ff28076d53452c2748fafd17f44b5a51ba3698400", "language": "Python", "lines": 58, "truncated": false, "block": 1, "row": 6116 }, { "path": "bin/3.1_T2Processing/changSNR.py", "sha256": "b4ad53fa9b2ed47b615dd1408e6446ff6e7b0e4f2e83a80de1c4de7e2832e66d", "language": "Python", "lines": 68, "truncated": false, "block": 1, "row": 6205 }, { "path": "bin/3.1_T2Processing/getIncidenceMap.py", "sha256": "8fbd50ab526600da402644b291ed184921e5c4da9918bc784bb0546933fefd18", "language": "Python", "lines": 164, "truncated": false, "block": 1, "row": 7841 }, { "path": "bin/3.1_T2Processing/getIncidenceSize.py", "sha256": "3ecfd8f33ad255b7c52a03623d2a5b652e3b63055dd06b51f35927c1d87aad3a", "language": "Python", "lines": 296, "truncated": false, "block": 1, "row": 8957 }, { "path": "bin/3.1_T2Processing/getIncidenceSize_par.py", "sha256": "ebb6d1e08744365496a513ed59fdf75361b0d5a83a7c650998428066115a185d", "language": "Python", "lines": 296, "truncated": false, "block": 1, "row": 8989 }, { "path": "bin/3.1_T2Processing/sijbersSNR.py", "sha256": "2f20ec8fd97cb4e2fbd8320de57e6c0460e3c4ddcfecb34935629fc6fc0266fd", "language": "Python", "lines": 61, "truncated": false, "block": 1, "row": 6174 }, { "path": "bin/3.2.1_DTIdata_extract/DTIdata_extract.py", "sha256": "6abb37002bb21653d24a9edcc532cc30c1eb307249acb49ea2089c0f05dcfe0b", "language": "Python", "lines": 109, "truncated": false, "block": 1, "row": 7054 }, { "path": "bin/3.2.1_DTIdata_extract/iterativeRun.py", "sha256": "875d2d0654ccd8014911d416241ba9f6c53701b72a8010fd703eb50d33f20c7f", "language": "Python", "lines": 44, "truncated": false, "block": 1, "row": 5754 }, { "path": "bin/3.2.1_DTIdata_extract/iterativeRun_MA.py", "sha256": "ace333cdcd8a1b21d4c66e48241d11e4ed89b6736a3242b719e17275bc3d3770", "language": "Python", "lines": 65, "truncated": false, "block": 1, "row": 6441 }, { "path": "bin/3.2.1_DTIdata_extract/iterativeRun_MA_peri-infarct_ROIs.py", "sha256": "ed8ed3859c88bd5b8e4759e40c9a6c7496cc6858eed1fd7974b54b73b384d78f", "language": "Python", "lines": 65, "truncated": false, "block": 1, "row": 6438 }, { "path": "bin/3.2.1_DTIdata_extract/iterativeRun_MA_stroke_mask.py", "sha256": "2ffb9796f8e2dcffdd9d8811fd7c24c9154356b0f81b64cfdff67d3fa33bf64c", "language": "Python", "lines": 65, "truncated": false, "block": 1, "row": 6433 }, { "path": "bin/3.2_DTIConnectivity/dsi_main.py", "sha256": "7af1de52247ba7c06e0a7d211f44db6930abd650ed5aab7329128f87cf34eb63", "language": "Python", "lines": 354, "truncated": false, "block": 1, "row": 8940 }, { "path": "bin/3.2_DTIConnectivity/dsi_tools.py", "sha256": "08d37ad6ae8a05112d89ddd37e4e51e6b557455b93ee7d79adbea463bc3728a7", "language": "Python", "lines": 888, "truncated": false, "block": 1, "row": 9651 }, { "path": "bin/3.2_DTIConnectivity/plotDTI_mat.py", "sha256": "580355dd358b41224aa6ba473cb66234905a9e69c1842b125f9a4d53c2f74fba", "language": "Python", "lines": 126, "truncated": false, "block": 1, "row": 7042 }, { "path": "bin/3.3_fMRIActivity/correlate_matrix.py", "sha256": "b8e0e91344288bf34549f16df0130e3ecefeaa852cafd9438e99345ce8a40269", "language": "Python", "lines": 22, "truncated": false, "block": 1, "row": 5660 }, { "path": "bin/3.3_fMRIActivity/correlate_seed_voxels.py", "sha256": "6eba557c4727210ca93d01089ff0a71f1cce81880151795248e35e2a55943371", "language": "Python", "lines": 160, "truncated": false, "block": 1, "row": 7722 }, { "path": "bin/3.3_fMRIActivity/create_seed_rois.py", "sha256": "a91eebac0bbb8d38ddd06d638a71bcfc6e172374b0f45826482bd677aa67a530", "language": "Python", "lines": 271, "truncated": false, "block": 1, "row": 8438 }, { "path": "bin/3.3_fMRIActivity/fsl_mean_ts.py", "sha256": "4a55a7f640195b13f7017bc170b00573b5f631f50bd444524e47d0d8cbe6a729", "language": "Python", "lines": 175, "truncated": false, "block": 1, "row": 7879 }, { "path": "bin/3.3_fMRIActivity/getRegrTable.py", "sha256": "dd29e5e9786b422f89e367f0189f49ba359bc0c26e1eb8b7964833f51fe17dd1", "language": "Python", "lines": 134, "truncated": false, "block": 1, "row": 7552 }, { "path": "bin/3.3_fMRIActivity/getSingleRegTable.py", "sha256": "d12578380b72e72e54d9e92790bf939b68f56071be8aacac7169acac163b6970", "language": "Python", "lines": 137, "truncated": false, "block": 1, "row": 7529 }, { "path": "bin/3.3_fMRIActivity/i32Reader.py", "sha256": "8b1d59264f649282cb25c375a9e089b6f8a516382820dee5d345c72d01db122e", "language": "Python", "lines": 152, "truncated": false, "block": 1, "row": 7512 }, { "path": "bin/3.3_fMRIActivity/parReader.py", "sha256": "1402b62dec05c57cbdc345a1cba1cc262f18d71de64c27fdb5bfbad4c9d91007", "language": "Python", "lines": 50, "truncated": false, "block": 1, "row": 5836 }, { "path": "bin/3.3_fMRIActivity/peakdet.py", "sha256": "6f43738892045307bd9c8a8c63f3f684c4b6521c84a50c17337b7775558285cf", "language": "Python", "lines": 87, "truncated": false, "block": 1, "row": 6447 }, { "path": "bin/3.3_fMRIActivity/plotfMRI_mat.py", "sha256": "41052525863d55887e07c11bb61b335bdd01709d2d7a045d9714eea4d6dc5a50", "language": "Python", "lines": 75, "truncated": false, "block": 1, "row": 6344 }, { "path": "bin/3.3_fMRIActivity/process_fMRI.py", "sha256": "2a033261e3de80ac8826e4f00b3ef6a0650063d0e18857421cd68556b990ee16", "language": "Python", "lines": 406, "truncated": false, "block": 1, "row": 8960 }, { "path": "bin/3.3_fMRIActivity/regress.py", "sha256": "0f8b1aa40bfb0f4a35283701259315a549ff5bba9ad3d273499ca1fd67c89709", "language": "Python", "lines": 345, "truncated": false, "block": 1, "row": 8791 }, { "path": "bin/4.1_T2mapPreProcessing/MICO.py", "sha256": "607fec04d0be32d2eca61ac19dd395f9274ee047887149bc6541aead47cf09a5", "language": "Python", "lines": 113, "truncated": false, "block": 1, "row": 6617 }, { "path": "bin/4.1_T2mapPreProcessing/anisodiff.py", "sha256": "b101f2c5321eaace711861bdf962de5735845c5bf94c88be23773f47bd9cfe1b", "language": "Python", "lines": 87, "truncated": false, "block": 1, "row": 6647 }, { "path": "bin/4.1_T2mapPreProcessing/applyMICO.py", "sha256": "bed203c11527bb228a57c367468c9afe8ba849c0ddbecff7fd02ab8c13985fb0", "language": "Python", "lines": 219, "truncated": false, "block": 1, "row": 7654 }, { "path": "bin/4.1_T2mapPreProcessing/preProcessing_T2MAP.py", "sha256": "fd0f456028fb37f83cf257b00d76c151d16a4d6140c3485617c4b3d8bb6fd2e5", "language": "Python", "lines": 255, "truncated": false, "block": 1, "row": 8380 }, { "path": "bin/4.1_T2mapPreProcessing/registration_T2MAP.py", "sha256": "403ee266700260d2933e9d778ae696356d15965f6cec8acb3a8a9cb1074f2799", "language": "Python", "lines": 241, "truncated": false, "block": 1, "row": 8593 }, { "path": "bin/4.1_T2mapPreProcessing/t2map_data_extract.py", "sha256": "35e3b059b998dea06b17e0e1807cfbf3e87cd9a42ea370a2cc13aeaf29953b00", "language": "Python", "lines": 113, "truncated": false, "block": 1, "row": 7434 }, { "path": "bin/5.1_ROI_analysis/01_dilate_mask_process.py", "sha256": "76447abdf39ca54a55bf48193e243b6449168d5ca3cda94be2c2928f6733def3", "language": "Python", "lines": 229, "truncated": false, "block": 1, "row": 8461 }, { "path": "bin/5.1_ROI_analysis/02_apply_xfm_process.py", "sha256": "ff078be81980b464b9d0fc06deb9076371dd4b6c297b1633012302c7f4b23bfa", "language": "Python", "lines": 345, "truncated": false, "block": 1, "row": 9194 }, { "path": "bin/5.1_ROI_analysis/03_create_seed_rois_process.py", "sha256": "87abd45106d1f52bda1424ba3cbf56c74b8cc5d3e03acbe8960e7797ed3d1cc9", "language": "Python", "lines": 252, "truncated": false, "block": 1, "row": 8807 }, { "path": "bin/5.1_ROI_analysis/04_examine_rois.py", "sha256": "52f38477bcaf4fd74ce7edb488b616133d9e9e9f52ce37f7801489cd0ff7266a", "language": "Python", "lines": 61, "truncated": false, "block": 1, "row": 6206 }, { "path": "bin/5.1_ROI_analysis/apply_xfm.py", "sha256": "077ed6e74b004e147074f30e2b848b7645e4594b0e9ff80d3bf5c7645aa889b7", "language": "Python", "lines": 177, "truncated": false, "block": 1, "row": 7680 }, { "path": "bin/5.1_ROI_analysis/create_seed_rois.py", "sha256": "b9ea4791ef28d54cc2b000e762d7c4e221341e10217feeb240e4b10d20f938fd", "language": "Python", "lines": 179, "truncated": false, "block": 1, "row": 7783 }, { "path": "bin/5.1_ROI_analysis/dilate_mask.py", "sha256": "8764eea3b9e70a66d44bee32d4bc8b614ce2e0ecc30cf9b229ad1829ccfe223a", "language": "Python", "lines": 72, "truncated": false, "block": 1, "row": 6229 }, { "path": "bin/5.1_ROI_analysis/fsl_mean_ts.py", "sha256": "33c4e9d3ad3dc051f09a9a37ff900d7c438d4f465a0e2d51d3f0595ed6e2d665", "language": "Python", "lines": 91, "truncated": false, "block": 1, "row": 6696 }, { "path": "bin/5.1_ROI_analysis/proc_tools.py", "sha256": "b6b4db66f92c2470c20ad6fefe2a58ae8589c154e37f74162201b11a948551d3", "language": "Python", "lines": 257, "truncated": false, "block": 1, "row": 8727 }, { "path": "bin/5.1_ROI_analysis/pv_parser.py", "sha256": "c58055f19f3bb409c729b6170dda6b433a7663d3a3861f58983a7c5fd24c2f7e", "language": "Python", "lines": 416, "truncated": false, "block": 1, "row": 8872 }, { "path": "bin/5.1_ROI_analysis/pv_reader.py", "sha256": "79dc5c3381eef29fabaedb4a8c7a16bc872fc6fae8adcf6a785385a8b72a3a12", "language": "Python", "lines": 490, "truncated": false, "block": 1, "row": 9304 }, { "path": "bin/PV2NIfTiConverter/Alternative_pv_reader/pv_parser.py", "sha256": "c58055f19f3bb409c729b6170dda6b433a7663d3a3861f58983a7c5fd24c2f7e", "language": "Python", "lines": 416, "truncated": false, "block": 1, "row": 8872 }, { "path": "bin/PV2NIfTiConverter/Alternative_pv_reader/pv_reader.py", "sha256": "79dc5c3381eef29fabaedb4a8c7a16bc872fc6fae8adcf6a785385a8b72a3a12", "language": "Python", "lines": 490, "truncated": false, "block": 1, "row": 9304 }, { "path": "bin/PV2NIfTiConverter/P2_IDLt2_mapping.py", "sha256": "ebd7ea6d4adaf7b7f9c93523fc06491a5edb29ac7b29d9f4ed803ce14b1f592a", "language": "Python", "lines": 341, "truncated": false, "block": 1, "row": 8815 }, { "path": "bin/PV2NIfTiConverter/ReferenceMethods/brummerSNR.py", "sha256": "585156349e1c3f9feaf6f7121cc88bf378227b622d6715f380bdef5923871764", "language": "Python", "lines": 71, "truncated": false, "block": 1, "row": 6164 }, { "path": "bin/PV2NIfTiConverter/ReferenceMethods/changSNR.py", "sha256": "c6cdf1690284a1d878da293893ef5b5558f62e0bde007d4067a8f2603d721a6b", "language": "Python", "lines": 83, "truncated": false, "block": 1, "row": 6263 }, { "path": "bin/PV2NIfTiConverter/ReferenceMethods/getSNR.py", "sha256": "15faa3a9ce3639623381e1551f17fcd350b607048bc335ae94e4412ade48424a", "language": "Python", "lines": 88, "truncated": false, "block": 1, "row": 6457 }, { "path": "bin/PV2NIfTiConverter/ReferenceMethods/sijbersSNR.py", "sha256": "94d5a9fd409565eaec91bf725f4a00ff6231d8df4f217daaa0a835b17719a99e", "language": "Python", "lines": 75, "truncated": false, "block": 1, "row": 6213 }, { "path": "bin/PV2NIfTiConverter/dict2xml.py", "sha256": "748dd584281599ad2ef571b00a02f82563d88271e2d7f67239ca419943b336ea", "language": "Python", "lines": 91, "truncated": false, "block": 1, "row": 6506 }, { "path": "bin/PV2NIfTiConverter/pv_conv2Nifti.py", "sha256": "c64b43ad4a8d01a76270ffaefb6263a3438ad78c4a0d63a2e953e2feeecec8e5", "language": "Python", "lines": 385, "truncated": false, "block": 1, "row": 9099 }, { "path": "bin/PV2NIfTiConverter/pv_conv2Nifti_bval_bvec.py", "sha256": "f5e982660215290f274ce9be5b1f2820e71a3142ad3c68a3a1d479775ab571a0", "language": "Python", "lines": 385, "truncated": false, "block": 1, "row": 9089 }, { "path": "bin/PV2NIfTiConverter/pv_parseBruker_md_np.py", "sha256": "c250eedcf5f48c75ff9c3e2f5e1a30e778f24fb1ae1e6ace4b38f0206e31e8cf", "language": "Python", "lines": 344, "truncated": false, "block": 1, "row": 8758 }, { "path": "bin/__init__.py", "sha256": "93d37ac6efcf3d452dbf157e9b7467582dbf2bb634ef8144d0b966f33e09e725", "language": "Python", "lines": 1, "truncated": false, "block": 1, "row": 4990 }, { "path": "bin/batchProc.py", "sha256": "f48e677ee9ec83584b6805e8630f155135bb08c2dd080fda79f96122380e8aaf", "language": "Python", "lines": 1542, "truncated": false, "block": 1, "row": 9814 }, { "path": "bin/common/__init__.py", "sha256": "effd68d153376cd94c60d92997ee4000419da5b7cd603dd1b350429cd6cde0d6", "language": "Python", "lines": 1, "truncated": false, "block": 1, "row": 5049 }, { "path": "bin/common/artifact_manifest.py", "sha256": "002e300e143736fe080d9b3894b49ae667b8a4b9476d8e2426f985e72b21068e", "language": "Python", "lines": 311, "truncated": false, "block": 1, "row": 8625 }, { "path": "bin/common/bet.py", "sha256": "1322be1b5fd79c177f8e1acce777769a8ddd89bd644eb3d1369348c42791093d", "language": "Python", "lines": 475, "truncated": false, "block": 1, "row": 9128 }, { "path": "bin/common/fmri_metadata.py", "sha256": "d2442b4a6738ebe82015a357c85ab10ce6017b3227e1f42f152e070faaf17d8b", "language": "Python", "lines": 69, "truncated": false, "block": 1, "row": 6610 }, { "path": "bin/common/script_logging.py", "sha256": "46da1e1dde372d1e3f56854990996beb7250d1d7069f583145d93e592e7983c3", "language": "Python", "lines": 136, "truncated": false, "block": 1, "row": 7268 }, { "path": "bin/conv2Nifti_auto.py", "sha256": "327c3480e5c92e03a7446388bca4cd0d48a063ab64123f43456f0ba00991e26b", "language": "Python", "lines": 890, "truncated": false, "block": 1, "row": 9718 }, { "path": "bin/helper_tools/DistributeStrokeMasks.py", "sha256": "b486b7a2d12fe6dcf9d6ad9beb7f258d3b7f0abefae01b8ec9e67935d77ff84a", "language": "Python", "lines": 66, "truncated": false, "block": 1, "row": 6828 }, { "path": "bin/helper_tools/MRI_files_summarizer.py", "sha256": "253a327543f8a7cba7dc6a56d46eba88123f29e6b184a15b1ee362cc42b6a038", "language": "Python", "lines": 53, "truncated": false, "block": 1, "row": 6282 }, { "path": "bin/helper_tools/ReorientBatch.py", "sha256": "9485d0042b59bc4a040e25a78926794d09728a24e3a988f43a84c8a717031dc0", "language": "Python", "lines": 564, "truncated": false, "block": 1, "row": 9177 }, { "path": "bin/helper_tools/Reset_proc_folder.py", "sha256": "3a4087d7f193b4e613835e98c97b2a12d05d675a3ce559d77405c6a3a1ac4dc5", "language": "Python", "lines": 1104, "truncated": false, "block": 1, "row": 9719 }, { "path": "bin/helper_tools/adjustbvecRep.py", "sha256": "40c7084010e81b05bb9ea96be9bfcb2fb9fe27f761e8cb0cddef182fdf5847e0", "language": "Python", "lines": 100, "truncated": false, "block": 1, "row": 7037 }, { "path": "bin/helper_tools/batch_qc_reports.py", "sha256": "3f72e769ed7cacde4807664aa83b420a497ede553d95023a07dd37c70a9b949c", "language": "Python", "lines": 709, "truncated": false, "block": 1, "row": 9591 }, { "path": "bin/helper_tools/crop_T2.py", "sha256": "d9e1b8f397024321645ffe87da74c103cb2246388466309951614bdf46bdfa4e", "language": "Python", "lines": 97, "truncated": false, "block": 1, "row": 6983 }, { "path": "bin/helper_tools/fieldmap_json_edit.py", "sha256": "55c8ff7c64e5adbc6e3f5f04c5cecec22489c7d70b235d00e590426ff8481293", "language": "Python", "lines": 65, "truncated": false, "block": 1, "row": 6785 }, { "path": "bin/helper_tools/getAtlasRegionSize_BIDS.py", "sha256": "8d56a2182a003f2105b87a69dd6d45313c6b90e8dd50d1dda880ad5070219e13", "language": "Python", "lines": 301, "truncated": false, "block": 1, "row": 8537 }, { "path": "bin/helper_tools/getAtlasRegionSize_noBIDS.py", "sha256": "b1178c89f7be5640612f8b3e5cc3148204e5ac1eeabfacdaa65031344a168da0", "language": "Python", "lines": 262, "truncated": false, "block": 1, "row": 8494 }, { "path": "bin/helper_tools/plot_sourcedata_niftis.py", "sha256": "845762fd35d0f59377e1f0b8e077737fa6714a08eab3ee529f325606278f5238", "language": "Python", "lines": 309, "truncated": false, "block": 1, "row": 8955 }, { "path": "bin/helper_tools/remove_carets_spaces.sh", "sha256": "35d0e4f637717fa3221a0f17f81ed839981a27322176d051f371236a91799383", "language": "Shell", "lines": 33, "truncated": false, "block": 1, "row": 11577 }, { "path": "bin/helper_tools/reset_naming.py", "sha256": "b90135286a2a0b074f10fa1355022cbf96e9f1a0cf1ae6d255f7f8817c253a96", "language": "Python", "lines": 78, "truncated": false, "block": 1, "row": 6727 }, { "path": "docs/AIDAmri_workshop.ipynb", "sha256": "2244dd6aef1973d3b442d0feb002e33ad3ac6a3285882bd87c218390677997d7", "language": "Jupyter", "lines": 378, "truncated": false, "block": 1, "row": 1987 }, { "path": "install/aidamri_entrypoint.sh", "sha256": "e03f47c937f986976db0229c368eac82b0608ad8c363813af4747dddc0537f5b", "language": "Shell", "lines": 10, "truncated": false, "block": 1, "row": 11144 }, { "path": "install/fslinstaller_mod.py", "sha256": "3827de2da522d9b5bc33b63a3500573ff7985f61641a81b54553e6499c301db3", "language": "Python", "lines": 3102, "truncated": false, "block": 1, "row": 9860 }, { "path": "install/install_immv.sh", "sha256": "0a5976be62948ff6f88727bf2e10cd31a26a5670ba2b728d2a03cad93ee9fc04", "language": "Shell", "lines": 29, "truncated": false, "block": 1, "row": 11437 }, { "path": "install/write_aidamri_git_info.sh", "sha256": "6ccc1ff2bc616bd7b880a5240cbd937352947de2e1578b255a8313b377b746fe", "language": "Shell", "lines": 103, "truncated": false, "block": 1, "row": 11707 } ] }