{
 "format": "oscr-script-manifest/1",
 "repository": "github.com/opengene/fastp",
 "url": "https://github.com/OpenGene/fastp",
 "host": "github.com",
 "commit": "8a2397b6628ae14127efdb7566f67fc05f9aea56",
 "license": "MIT",
 "license_confirmed_by": "license file LICENSE",
 "redistribution": "yes",
 "files": [
  {
   "path": "LICENSE",
   "sha256": "52e18866a994ee9839aa6d15696bc1fe425e6466631d3a57a75c089dd84ae88e",
   "language": "License",
   "lines": 21,
   "truncated": false,
   "block": 3,
   "row": 8074
  },
  {
   "path": "README.md",
   "sha256": "3c62d6a355e9a16a95ff7a7ad76f87410acf3662df3d0c14080f473f3d8f5773",
   "language": "Text",
   "lines": 558,
   "truncated": false,
   "block": 4,
   "row": 2745
  },
  {
   "path": "parallel.py",
   "sha256": "6e92ae554b865ec430e4238dfe29d7f55cfbd6a9d0ec0d499c10ec0a6312f68a",
   "language": "Python",
   "lines": 592,
   "truncated": false,
   "block": 3,
   "row": 27457
  },
  {
   "path": "scripts/bench_e2e.sh",
   "sha256": "30431f99cf73645503586f6fcccbf06b560b8f2a9e9fc339ec44f40fc2c3759c",
   "language": "Shell",
   "lines": 238,
   "truncated": false,
   "block": 4,
   "row": 2217
  },
  {
   "path": "scripts/test_issue_697_stdout_merge.sh",
   "sha256": "002b739cda9b2043354b0528011e937cf9e3ec11c0706fd19700b820abf28efd",
   "language": "Shell",
   "lines": 28,
   "truncated": false,
   "block": 4,
   "row": 1714
  },
  {
   "path": "src/adaptertrimmer.cpp",
   "sha256": "e88cd59ccd90a8a7f368d1a8dbff9e41d71fdac1693d4d5597de66f2c39b4993",
   "language": "C++",
   "lines": 185,
   "truncated": false,
   "block": 3,
   "row": 2716
  },
  {
   "path": "src/adaptertrimmer.h",
   "sha256": "01207fbc7682e7a9cc5dfe033d1c894a9bf70070ad842632e18abdf097a42560",
   "language": "C/C++",
   "lines": 27,
   "truncated": false,
   "block": 3,
   "row": 3462
  },
  {
   "path": "src/basecorrector.cpp",
   "sha256": "ab916a5544f4bec3954fdf83f72bad1c8d10b71bf6c1d708dd02c8311e5f9375",
   "language": "C++",
   "lines": 107,
   "truncated": false,
   "block": 3,
   "row": 2262
  },
  {
   "path": "src/basecorrector.h",
   "sha256": "b8851135a68e54bd9df8319cef352aebb7bf7d9574878c6e5be67ec88f95a396",
   "language": "C/C++",
   "lines": 24,
   "truncated": false,
   "block": 3,
   "row": 3421
  },
  {
   "path": "src/bgzf.h",
   "sha256": "685c65972c53f280d49adee26f0e61e9a5472e0d87b2241d535c9457ca01c082",
   "language": "C/C++",
   "lines": 243,
   "truncated": false,
   "block": 3,
   "row": 4305
  },
  {
   "path": "src/cmdline.h",
   "sha256": "023f44082a662908239eafe29fed98623062c314a51f93becfe196c97612f950",
   "language": "C/C++",
   "lines": 809,
   "truncated": false,
   "block": 3,
   "row": 4505
  },
  {
   "path": "src/common.h",
   "sha256": "d55f583a47bf1b5f74a1543bec7e8c4c6f142b75e65b55617c5eaf9f6cb9c803",
   "language": "C/C++",
   "lines": 67,
   "truncated": false,
   "block": 3,
   "row": 3809
  },
  {
   "path": "src/duplicate.cpp",
   "sha256": "482b518839e198920d5af92c0356827ea527b793f934f3b05351945b70c8457b",
   "language": "C++",
   "lines": 169,
   "truncated": false,
   "block": 3,
   "row": 2557
  },
  {
   "path": "src/duplicate.h",
   "sha256": "459946dc8a44334038bd8bbe06eeffb14d1619f6c33a866f6ac059a2182b33ba",
   "language": "C/C++",
   "lines": 42,
   "truncated": false,
   "block": 3,
   "row": 3454
  },
  {
   "path": "src/evaluator.cpp",
   "sha256": "6fffe5af9879d16978a58fdae0a8a44891a26a51ec5ad5440aeee856f195c575",
   "language": "C++",
   "lines": 633,
   "truncated": false,
   "block": 3,
   "row": 3180
  },
  {
   "path": "src/evaluator.h",
   "sha256": "f3ab03377804b86686638b12e4f189917063552f218cc2b82b3e0e961c52a396",
   "language": "C/C++",
   "lines": 38,
   "truncated": false,
   "block": 3,
   "row": 3528
  },
  {
   "path": "src/fastareader.cpp",
   "sha256": "2e7e450961d36aefb1920002a3185d33802c34d400214c83fd320de5f5ecb4c7",
   "language": "C++",
   "lines": 120,
   "truncated": false,
   "block": 3,
   "row": 2156
  },
  {
   "path": "src/fastareader.h",
   "sha256": "df90063aab9c2e0d714a85089ac8909f33cb40be33e7c76615abce51fa659cb5",
   "language": "C/C++",
   "lines": 66,
   "truncated": false,
   "block": 3,
   "row": 3530
  },
  {
   "path": "src/fastqreader.cpp",
   "sha256": "e8e11a777bca45c32e733af1aaaf004f216694cac1712f9e6a374ee380442115",
   "language": "C++",
   "lines": 460,
   "truncated": false,
   "block": 3,
   "row": 3058
  },
  {
   "path": "src/fastqreader.h",
   "sha256": "f527639c067c9a06889f8a922a0e862bdf774fd35465822df20470abaff698cc",
   "language": "C/C++",
   "lines": 106,
   "truncated": false,
   "block": 3,
   "row": 3916
  },
  {
   "path": "src/filter.cpp",
   "sha256": "a17fc2d9469b04642cd01142670b38f136dd2c1bbd5ec576703b6646ff2fc0c5",
   "language": "C++",
   "lines": 264,
   "truncated": false,
   "block": 3,
   "row": 2870
  },
  {
   "path": "src/filter.h",
   "sha256": "cd68425c1beadec2fadc37e1b144315b34b08abe236903f00209c042db64ad24",
   "language": "C/C++",
   "lines": 32,
   "truncated": false,
   "block": 3,
   "row": 3427
  },
  {
   "path": "src/filterresult.cpp",
   "sha256": "3896bd708ace0aa8d9984f044d5dfeaedeafe49c5e151c04f83d09cfff5bab53",
   "language": "C++",
   "lines": 474,
   "truncated": false,
   "block": 3,
   "row": 3181
  },
  {
   "path": "src/filterresult.h",
   "sha256": "6dd155e19e512eb5ed1d6f7dafe64907f4fd1ffb7056d70432d01438e5ee026a",
   "language": "C/C++",
   "lines": 82,
   "truncated": false,
   "block": 3,
   "row": 3893
  },
  {
   "path": "src/htmlreporter.cpp",
   "sha256": "118e63a77e7ea2febe75185fa880defc208678991a34b9c979cdccf6e5623b4d",
   "language": "C++",
   "lines": 629,
   "truncated": false,
   "block": 3,
   "row": 3220
  },
  {
   "path": "src/htmlreporter.h",
   "sha256": "56e67ee1cac330e18261465fc3d2e649113390bb263353cd08931cd5b39b61e3",
   "language": "C/C++",
   "lines": 51,
   "truncated": false,
   "block": 3,
   "row": 3684
  },
  {
   "path": "src/jsonreporter.cpp",
   "sha256": "47fd266eac3d6efab88703e26fba9697d407566a545ff8808a1f469acd875a90",
   "language": "C++",
   "lines": 172,
   "truncated": false,
   "block": 3,
   "row": 2730
  },
  {
   "path": "src/jsonreporter.h",
   "sha256": "e0538806764488301deda152c7aa45ea47091488032f363577341c383a12d16e",
   "language": "C/C++",
   "lines": 37,
   "truncated": false,
   "block": 3,
   "row": 3447
  },
  {
   "path": "src/knownadapters.h",
   "sha256": "1434e0627feab3e77106dd6937817ac46b8a278f1874e50b1ac8626c706a55b1",
   "language": "C/C++",
   "lines": 251,
   "truncated": false,
   "block": 3,
   "row": 4582
  },
  {
   "path": "src/main.cpp",
   "sha256": "f589c9c040d090bd3b28a1f4f2615ae320f7901502646328462aacfdc45929f8",
   "language": "C++",
   "lines": 522,
   "truncated": false,
   "block": 3,
   "row": 3242
  },
  {
   "path": "src/matcher.cpp",
   "sha256": "3b76536e3eddd061a92079675d11b801567e19b84f96e7fe6012f8cb7f8007ff",
   "language": "C++",
   "lines": 101,
   "truncated": false,
   "block": 3,
   "row": 2303
  },
  {
   "path": "src/matcher.h",
   "sha256": "b9e7f0c1e76940539c13bbee3fd4472ccadc9c37ccfd8f973fb7b138862380d8",
   "language": "C/C++",
   "lines": 22,
   "truncated": false,
   "block": 3,
   "row": 3396
  },
  {
   "path": "src/nucleotidetree.cpp",
   "sha256": "6bf4e19457d4f24cf6f36858a3a809cebc6ff28b37d8df7b6b62607716d92e32",
   "language": "C++",
   "lines": 104,
   "truncated": false,
   "block": 3,
   "row": 2018
  },
  {
   "path": "src/nucleotidetree.h",
   "sha256": "3514ae569e99b8aaadd5d84e944edf5087848b8c2c03ae9f8cfd2c64672e9d98",
   "language": "C/C++",
   "lines": 40,
   "truncated": false,
   "block": 3,
   "row": 3432
  },
  {
   "path": "src/options.cpp",
   "sha256": "89d832742e39eda6e55135c4c54fe0651dbdaed22611646b3055e83e1403ebd6",
   "language": "C++",
   "lines": 525,
   "truncated": false,
   "block": 3,
   "row": 3206
  },
  {
   "path": "src/options.h",
   "sha256": "dd9941894b58f4a90095127e03a4d936b961266634334a0431f0b2b668eaab74",
   "language": "C/C++",
   "lines": 389,
   "truncated": false,
   "block": 3,
   "row": 4296
  },
  {
   "path": "src/overlapanalysis.cpp",
   "sha256": "e1d7db6265e812109a9e1a92eb4dd644d9bbdec6098d7077d070f8486e13a1e2",
   "language": "C++",
   "lines": 210,
   "truncated": false,
   "block": 3,
   "row": 2866
  },
  {
   "path": "src/overlapanalysis.h",
   "sha256": "9518400d8826d8619aaed70b9571cf36858c9c5b923d61a5f8e11462c54a765a",
   "language": "C/C++",
   "lines": 38,
   "truncated": false,
   "block": 3,
   "row": 3460
  },
  {
   "path": "src/peprocessor.cpp",
   "sha256": "58a6181802860051bbffbc40aff9bb5d5ae5abc27dea6426ae691b1850399840",
   "language": "C++",
   "lines": 1090,
   "truncated": false,
   "block": 3,
   "row": 3264
  },
  {
   "path": "src/peprocessor.h",
   "sha256": "77842b736644ac900ae855cff366219131f6f4cd7a3df286341d0458a447f550",
   "language": "C/C++",
   "lines": 75,
   "truncated": false,
   "block": 3,
   "row": 3818
  },
  {
   "path": "src/polyx.cpp",
   "sha256": "46b4d1e55fa0dda44d91356ebd8ec81f075bba669b6ed86e7c2329ffc841b750",
   "language": "C++",
   "lines": 130,
   "truncated": false,
   "block": 3,
   "row": 2301
  },
  {
   "path": "src/polyx.h",
   "sha256": "066d95754c44e26ef924aea109f534fb3e4b59608af836ae4729bf786f3884ee",
   "language": "C/C++",
   "lines": 28,
   "truncated": false,
   "block": 3,
   "row": 3425
  },
  {
   "path": "src/processor.cpp",
   "sha256": "24f69ee47979da62d2e27609108b95c735ecece0a47f0fa39ccd2d87e721c82a",
   "language": "C++",
   "lines": 23,
   "truncated": false,
   "block": 3,
   "row": 683
  },
  {
   "path": "src/processor.h",
   "sha256": "ec98bab5f5c417d17ba707c512e8b26ae9bf5dc983efba4593fc7b85282b94b5",
   "language": "C/C++",
   "lines": 22,
   "truncated": false,
   "block": 3,
   "row": 3365
  },
  {
   "path": "src/read.cpp",
   "sha256": "d19198b57844642ef41db3111f4f0d7826410dc6a62a819938c332e5a37d400c",
   "language": "C++",
   "lines": 301,
   "truncated": false,
   "block": 3,
   "row": 2886
  },
  {
   "path": "src/read.h",
   "sha256": "0823973473a8181a068402e4b97376d3dd87efb3886b3258640291234711549f",
   "language": "C/C++",
   "lines": 73,
   "truncated": false,
   "block": 3,
   "row": 3647
  },
  {
   "path": "src/readpool.cpp",
   "sha256": "5fdb270bca97354d0e88b61b005c081558d089491a2de176805a7bf05d140eee",
   "language": "C++",
   "lines": 75,
   "truncated": false,
   "block": 3,
   "row": 1650
  },
  {
   "path": "src/readpool.h",
   "sha256": "ed8f2eb4ad4326906e6090dc35c6dd6eca30746fe9cedda4c54221fe756a4a47",
   "language": "C/C++",
   "lines": 38,
   "truncated": false,
   "block": 3,
   "row": 3441
  },
  {
   "path": "src/seprocessor.cpp",
   "sha256": "4249a4910285ef087993aaa5055cb41eb5e7e434f61e4648069ac24d796b7f17",
   "language": "C++",
   "lines": 488,
   "truncated": false,
   "block": 3,
   "row": 3150
  },
  {
   "path": "src/seprocessor.h",
   "sha256": "59bef055d576455894ffa7cb47cb171c9c33ccbb302a53a57d060f2727eaec60",
   "language": "C/C++",
   "lines": 59,
   "truncated": false,
   "block": 3,
   "row": 3656
  },
  {
   "path": "src/sequence.cpp",
   "sha256": "a174c80e08324381925072392b19b14a4051320e3c47f7f19a3789dda4b9a559",
   "language": "C++",
   "lines": 54,
   "truncated": false,
   "block": 3,
   "row": 1319
  },
  {
   "path": "src/sequence.h",
   "sha256": "97d53a09e0fde4215b203f9fcdf0d53ee3534cd060cffb53e1ad1da4fde1bd31",
   "language": "C/C++",
   "lines": 29,
   "truncated": false,
   "block": 3,
   "row": 3404
  },
  {
   "path": "src/simd.cpp",
   "sha256": "7c58bd74511765c81ba51999f15b437f0f8eb198dc768d3f611156a5c19be229",
   "language": "C++",
   "lines": 568,
   "truncated": false,
   "block": 3,
   "row": 3182
  },
  {
   "path": "src/simd.h",
   "sha256": "6aa5bfb14d67cb44e1c19bef719dcb5deb4e42e4677b2963f837408a1e0b05f8",
   "language": "C/C++",
   "lines": 38,
   "truncated": false,
   "block": 3,
   "row": 3641
  },
  {
   "path": "src/singleproducersingleconsumerlist.h",
   "sha256": "e970df0502264a7af9861a8e2c975502f7cd582ce2eb294af1b8857411655119",
   "language": "C/C++",
   "lines": 178,
   "truncated": false,
   "block": 3,
   "row": 4152
  },
  {
   "path": "src/stats.cpp",
   "sha256": "f18d30e769113fbcaa5ce29978b289fd275e0efc532588ac81bcb32564cc41a9",
   "language": "C++",
   "lines": 982,
   "truncated": false,
   "block": 3,
   "row": 3249
  },
  {
   "path": "src/stats.h",
   "sha256": "5fea073d1d53dfc749908cdf1bb464337d380c2956583e60658ad0ea2d6285c7",
   "language": "C/C++",
   "lines": 109,
   "truncated": false,
   "block": 3,
   "row": 3922
  },
  {
   "path": "src/threadconfig.cpp",
   "sha256": "0d6cb4559165ac58ff9248b7d88e1d1850209132d7c50871d8e44409b0adb961",
   "language": "C++",
   "lines": 161,
   "truncated": false,
   "block": 3,
   "row": 2463
  },
  {
   "path": "src/threadconfig.h",
   "sha256": "4b2ad1bc1eac62dfc5e85068b039eacf966ff06b21d135e90460da216c8c7132",
   "language": "C/C++",
   "lines": 71,
   "truncated": false,
   "block": 3,
   "row": 3828
  },
  {
   "path": "src/umiprocessor.cpp",
   "sha256": "7918eb7b62d7ee085153e88be2545a45d284319662dc5063dd911b0e42655d71",
   "language": "C++",
   "lines": 88,
   "truncated": false,
   "block": 3,
   "row": 1965
  },
  {
   "path": "src/umiprocessor.h",
   "sha256": "37dff56846da27b4d05abe222071d05a073e156b94da656060a8fb12613c0939",
   "language": "C/C++",
   "lines": 25,
   "truncated": false,
   "block": 3,
   "row": 3397
  },
  {
   "path": "src/unittest.cpp",
   "sha256": "9c3989ebe864217f83633f349cb3d442aed9b8ce733907948baec75fdaf75e54",
   "language": "C++",
   "lines": 39,
   "truncated": false,
   "block": 3,
   "row": 1400
  },
  {
   "path": "src/unittest.h",
   "sha256": "8121066d77d9ed85c00f1a3b2228140435cc901beacb4960116c48246a4428d2",
   "language": "C/C++",
   "lines": 17,
   "truncated": false,
   "block": 3,
   "row": 3345
  },
  {
   "path": "src/util.h",
   "sha256": "8b7273db0caa39824303741efcd8ffa8f0b30f653ca447333721ffa6c16c3217",
   "language": "C/C++",
   "lines": 293,
   "truncated": false,
   "block": 3,
   "row": 4207
  },
  {
   "path": "src/writer.cpp",
   "sha256": "878a6b721505a84ee436204453e057efd9109806ab25c5d355ce7c92a0851b8e",
   "language": "C++",
   "lines": 154,
   "truncated": false,
   "block": 3,
   "row": 2311
  },
  {
   "path": "src/writer.h",
   "sha256": "bac48745c5054ab6bc4f17f9fc608d5fc7b0778f40d2b91e8e500c298eab2b1d",
   "language": "C/C++",
   "lines": 73,
   "truncated": false,
   "block": 3,
   "row": 3799
  },
  {
   "path": "src/writerthread.cpp",
   "sha256": "8700c9e3f17f32fb7476389a73cf1cebd0bf8e26634938a721c9bfb25170262a",
   "language": "C++",
   "lines": 214,
   "truncated": false,
   "block": 3,
   "row": 2774
  },
  {
   "path": "src/writerthread.h",
   "sha256": "90db90b7f40dc8f6a9505da4f2637f5a8cf85a94a2075277cf83e552358184b9",
   "language": "C/C++",
   "lines": 68,
   "truncated": false,
   "block": 3,
   "row": 3710
  }
 ]
}