#!/usr/bin/env python3 """Convert prompt JSONL into sensor CSVs, cropped videos and OmniTS metadata. Supported video domains include CoVLA, AgiBot, CUHK-X, Future Factories and HoloAssist. Intermediate outputs may use local paths; package_release.py copies referenced assets and writes relative paths for distribution. Video stream copying preserves the original pipeline's keyframe behavior. """ from __future__ import annotations import argparse import hashlib import json import re import shutil import subprocess from concurrent.futures import ProcessPoolExecutor, as_completed from pathlib import Path import pandas as pd from probe import probe_ts_shape, probe_video_meta TS_BLOCK_RE = re.compile(r"(.*?)", re.DOTALL) DATA_LINE_RE = re.compile(r"^[\d.]+:\s*(.+)$") TEMPORAL_FIELD_KEYS = ("frames", "segment", "start_frame", "end_frame", "start", "end") def safe_filename_component(value: str) -> str: safe_value = re.sub(r"[^A-Za-z0-9_.-]+", "_", value).strip("_") return safe_value or "unknown" def source_cache_key(value: str) -> str: return hashlib.sha1(value.encode("utf-8")).hexdigest()[:10] def stable_video_id(entry: dict, dataset_name: str) -> str: """Use existing video_id when present; otherwise create a stable trace id.""" existing = entry.get("video_id") if existing: return safe_filename_component(str(existing)) identity = { "dataset": dataset_name, "task_id": entry.get("task_id"), "video_path": entry.get("video_path"), "frames": entry.get("frames"), "segment": entry.get("segment"), "start_frame": entry.get("start_frame"), "end_frame": entry.get("end_frame"), "start": entry.get("start"), "end": entry.get("end"), } digest = source_cache_key(json.dumps(identity, sort_keys=True, ensure_ascii=False)) task_id = safe_filename_component(str(entry.get("task_id", "no_task_id"))) dataset_part = safe_filename_component(dataset_name) return f"{dataset_part}_{task_id}_{digest}" def has_temporal_bounds(entry: dict) -> bool: """Return True when a row has the temporal fields used by video preprocessing.""" if entry.get("frames") is not None or entry.get("segment") is not None: return True if entry.get("start_frame") is not None and entry.get("end_frame") is not None: return True return entry.get("start") is not None and entry.get("end") is not None def has_frame_bounds(entry: dict) -> bool: """Frame bounds take priority over time bounds, as in preprocess_video_segments.""" if isinstance(entry.get("frames"), dict): return True return entry.get("start_frame") is not None and entry.get("end_frame") is not None def extract_frame_bounds(entry: dict) -> tuple[int, int]: """Extract [start_frame, end_frame] from ``frames`` or top-level fields.""" frames = entry.get("frames") if isinstance(frames, dict): start = int(frames.get("start_frame", entry.get("start_frame", 0))) end = int(frames.get("end_frame", entry.get("end_frame", 0))) else: start = int(entry.get("start_frame", 0)) end = int(entry.get("end_frame", 0)) if end < start: raise ValueError(f"invalid frame range: start={start}, end={end}") return start, end def extract_time_bounds(entry: dict) -> tuple[float, float]: """Extract [start, end] seconds from ``segment`` or top-level fields.""" segment = entry.get("segment") if isinstance(segment, dict): start = segment.get("start") end = segment.get("end") if start is not None and end is not None: start = float(start) end = float(end) if end < start: raise ValueError(f"invalid time range: start={start}, end={end}") return start, end start = entry.get("start") end = entry.get("end") if start is not None and end is not None: start = float(start) end = float(end) if end < start: raise ValueError(f"invalid time range: start={start}, end={end}") return start, end raise KeyError("no valid time bounds found") def _video_meta_dict(meta) -> dict | None: """Shape the 5-tuple from probe_video_meta into the jsonl dict form.""" if meta is None: return None w, h, sfps, nf, dur = meta return { "width": int(w), "height": int(h), "source_fps": float(sfps), "nb_frames": int(nf), "duration": float(dur), } def parse_timeseries_data_line(line: str) -> dict[str, float] | None: """Parse one prompt timeseries row into numeric channel values. Supported prompt row shapes: * ``12.345: x=1, y=2`` used by CoVLA/Holo/AgiBot/CUHK-X * ``2023-...Z, x=1, y=2`` used by Future Factories """ stripped = line.strip() if not stripped: return None m = DATA_LINE_RE.match(stripped) if m: kv_part = m.group(1) elif "," in stripped: timestamp, kv_part = stripped.split(",", 1) if not re.fullmatch(r"\d{4}-\d{2}-\d{2}(?:[T ].+)?", timestamp.strip()): return None else: return None if "..." in kv_part: return None row: dict[str, float] = {} for pair in kv_part.split(","): if "=" not in pair: continue k, v = pair.split("=", 1) k, v = k.strip(), v.strip() if not k: continue if v in ("null", "None", "nan", "NaN", ""): row[k] = float("nan") else: row[k] = float(v) return row or None def parse_timeseries_block(text: str) -> pd.DataFrame: """Extract numeric rows from a ... block into a DataFrame. Each data line looks like: "25.5: vEgo=6.517, aEgo=0.197, ..., lead_a=null". Returns a DataFrame with one column per variable; "null" or empty becomes NaN. """ match = TS_BLOCK_RE.search(text) if not match: raise ValueError("no block found") body = match.group(1) records: list[dict[str, float]] = [] for line in body.splitlines(): row = parse_timeseries_data_line(line) if row: records.append(row) if not records: raise ValueError(" block had no data rows") return pd.DataFrame.from_records(records) def probe_video_fps(video_path: Path) -> float: """Use ffprobe to read the source video's avg_frame_rate as a float.""" result = subprocess.run( [ "ffprobe", "-v", "error", "-select_streams", "v:0", "-show_entries", "stream=avg_frame_rate", "-of", "default=nw=1:nk=1", str(video_path), ], capture_output=True, text=True, check=True, ) num, den = result.stdout.strip().split("/") num_f, den_f = float(num), float(den) if den_f == 0: return 0.0 return num_f / den_f def probe_video_frame_count(video_path: Path) -> int: """Use ffprobe to estimate total frames for whole-clip conversion.""" meta = probe_video_meta(str(video_path)) if meta is None: return 0 _width, _height, source_fps, nb_frames, duration = meta if nb_frames > 0: return int(nb_frames) if source_fps > 0 and duration > 0: return max(1, int(duration * source_fps)) return 0 def get_video_fps(src_video: Path, fps_cache: dict[Path, float]) -> float: """Read and cache source fps for frame/time conversion.""" if src_video not in fps_cache: fps_cache[src_video] = probe_video_fps(src_video) fps = fps_cache[src_video] if fps <= 0: raise RuntimeError(f"could not probe fps for {src_video}") return fps def time_to_frame_bounds(start_time: float, end_time: float, fps: float) -> tuple[int, int]: """Convert seconds to inclusive frame bounds, matching preprocess_video_segments.""" if fps <= 0: raise RuntimeError(f"cannot convert time bounds with invalid fps={fps}") start_frame = max(0, int(start_time * fps)) end_frame = max(start_frame, int(end_time * fps)) return start_frame, end_frame def resolve_frame_bounds( entry: dict, src_video: Path, fps_cache: dict[Path, float], ) -> tuple[int, int]: """Resolve supported temporal fields into inclusive frame bounds. ``preprocess_video_segments.py`` accepts both frame fields and time fields. This converter keeps the same precedence: explicit frame bounds are used directly; otherwise ``segment`` / ``start`` / ``end`` are converted through the source video's fps. """ if has_frame_bounds(entry): return extract_frame_bounds(entry) if has_temporal_bounds(entry): start_sec, end_sec = extract_time_bounds(entry) fps = get_video_fps(src_video, fps_cache) return time_to_frame_bounds(start_sec, end_sec, fps) total_frames = probe_video_frame_count(src_video) if total_frames <= 0: raise KeyError( "no temporal bounds found and failed to probe whole-video frame count; " "expected frames, segment, start_frame/end_frame, or start/end" ) return 0, total_frames - 1 def frame_bounds_to_seconds( start_frame: int, end_frame: int, src_video: Path, fps_cache: dict[Path, float], ) -> tuple[float, float]: """Convert inclusive frame bounds to ffmpeg -ss / -t seconds.""" fps = get_video_fps(src_video, fps_cache) start_sec = start_frame / fps duration_sec = max(1e-3, (end_frame - start_frame + 1) / fps) return start_sec, duration_sec def slice_video(src: Path, dst: Path, start_sec: float, duration_sec: float) -> None: """Copy a segment with -c copy (stream copy, near-instant). Overwrites dst. Caveat: `-ss` before `-i` with `-c copy` seeks to the nearest keyframe, so clip start may be offset by up to the GOP length (typically ≤ 1s). For video-QA training on multi-second segments this is acceptable. """ dst.parent.mkdir(parents=True, exist_ok=True) if shutil.which("ffmpeg") is None: raise RuntimeError("ffmpeg not found on PATH") cmd = [ "ffmpeg", "-y", "-loglevel", "error", "-ss", f"{start_sec:.3f}", "-i", str(src), "-t", f"{duration_sec:.3f}", "-an", "-c", "copy", "-avoid_negative_ts", "make_zero", str(dst), ] subprocess.run(cmd, check=True, capture_output=True) def convert_entry( entry: dict, csv_dir: Path, clip_dir: Path, fps_cache: dict[Path, float], prompt_only: bool = False, dataset_name: str = "dataset", copy_full_video: bool = True, ) -> dict: """Convert one CoVLA row into the unified OmniTS row. Returns: ``{video_id, video_path, timeseries_path, prompt, answer}`` where ``prompt`` retains the inline ``...`` body. ``prompt_only=True`` skips TS-CSV writing and video slicing. The derived paths must already exist on disk. Use this to refresh prompts after the source prompt text changes without re-running the expensive work. """ csv_dir = Path(csv_dir).resolve() clip_dir = Path(clip_dir).resolve() if not prompt_only: csv_dir.mkdir(parents=True, exist_ok=True) clip_dir.mkdir(parents=True, exist_ok=True) video_id = stable_video_id(entry, dataset_name) src_video = Path(entry["video_path"]).expanduser().resolve() start_frame, end_frame = resolve_frame_bounds( entry=entry, src_video=src_video, fps_cache=fps_cache, ) # 1. Time-series CSV. In prompt-only mode we read the shape from the # existing file; in fresh mode we use the in-memory DataFrame's shape # directly (no extra IO). csv_name = f"{video_id}_{start_frame}_{end_frame}.csv" csv_path = csv_dir / csv_name if prompt_only: if not csv_path.exists(): raise FileNotFoundError(f"prompt-only mode: missing csv {csv_path}") ts_shape = probe_ts_shape(str(csv_path)) else: df = parse_timeseries_block(entry["prompt"]) df.to_csv(csv_path, index=False) ts_shape = (int(df.shape[0]), int(df.shape[1])) # 2. Video clip (ffmpeg-sliced). Reuse if it already exists. clip_name = f"{video_id}_{start_frame}_{end_frame}.mp4" clip_path = clip_dir / clip_name if prompt_only: if not (clip_path.exists() and clip_path.stat().st_size > 0): raise FileNotFoundError(f"prompt-only mode: missing clip {clip_path}") elif not (clip_path.exists() and clip_path.stat().st_size > 0): if copy_full_video and not has_temporal_bounds(entry): clip_path.parent.mkdir(parents=True, exist_ok=True) shutil.copy2(src_video, clip_path) else: start_sec, duration_sec = frame_bounds_to_seconds( start_frame=start_frame, end_frame=end_frame, src_video=src_video, fps_cache=fps_cache, ) slice_video(src_video, clip_path, start_sec, duration_sec) # 2b. Probe the sliced clip for the meta that `compute_exact_lengths` # needs — same whether we just wrote it or are reusing an existing clip. video_meta = _video_meta_dict(probe_video_meta(str(clip_path))) # 3. Unified row — prompt retains inline TS body; baseline uses it as-is, # omnits strips it in the collator via strip_ts_block(). video_meta / # ts_shape are optional hints consumed by the length estimator. row: dict = { "video_id": video_id, "video_path": str(clip_path), "timeseries_path": str(csv_path), "prompt": entry["prompt"], "answer": entry["ground_truth"], } if video_meta is not None: row["video_meta"] = video_meta if ts_shape is not None: row["ts_shape"] = [int(ts_shape[0]), int(ts_shape[1])] return row def _worker_convert(args: tuple[dict, str, str, bool, str, bool]) -> tuple[int, dict]: """Worker for ProcessPoolExecutor: convert a single entry. Returns (line_no, row). fps_cache is per-worker (no sharing). """ entry, csv_dir, clip_dir, prompt_only, dataset_name, copy_full_video = args line_no = entry["_line_no"] _entry = {k: v for k, v in entry.items() if k != "_line_no"} row = convert_entry( _entry, csv_dir=Path(csv_dir), clip_dir=Path(clip_dir), fps_cache={}, prompt_only=prompt_only, dataset_name=dataset_name, copy_full_video=copy_full_video, ) return line_no, row def _annotate_only(jsonl_path: Path, num_workers: int, force: bool) -> None: """Backfill video_meta / ts_shape into an existing unified OmniTS jsonl. Use when clips + csvs already exist on disk and you only need the meta fields added. Rewrites `jsonl_path` in place via .tmp + rename. Skips rows that already have both fields unless --force is passed.""" with jsonl_path.open() as f: rows = [json.loads(l) for l in f if l.strip()] print(f"[ANNOTATE] loaded {len(rows)} rows from {jsonl_path}") v_todo = [ i for i, r in enumerate(rows) if force or not isinstance(r.get("video_meta"), dict) ] t_todo = [ i for i, r in enumerate(rows) if r.get("timeseries_path") and (force or not isinstance(r.get("ts_shape"), (list, tuple))) ] print(f"[ANNOTATE] to probe: {len(v_todo)} videos, {len(t_todo)} TS csvs " f"(workers={num_workers})") if v_todo: done = 0 with ProcessPoolExecutor(max_workers=num_workers) as pool: futs = {pool.submit(probe_video_meta, rows[i]["video_path"]): i for i in v_todo} for fut in as_completed(futs): i = futs[fut] vm = _video_meta_dict(fut.result()) if vm is not None: rows[i]["video_meta"] = vm done += 1 if done % 1000 == 0: print(f"[ANNOTATE] video {done}/{len(v_todo)}", flush=True) if t_todo: done = 0 with ProcessPoolExecutor(max_workers=num_workers) as pool: futs = {pool.submit(probe_ts_shape, rows[i]["timeseries_path"]): i for i in t_todo} for fut in as_completed(futs): i = futs[fut] shape = fut.result() if shape is not None: rows[i]["ts_shape"] = [int(shape[0]), int(shape[1])] done += 1 if done % 2000 == 0: print(f"[ANNOTATE] ts {done}/{len(t_todo)}", flush=True) tmp = jsonl_path.with_suffix(jsonl_path.suffix + ".tmp") with tmp.open("w") as f: for r in rows: f.write(json.dumps(r, ensure_ascii=False) + "\n") tmp.replace(jsonl_path) n_vm = sum(1 for r in rows if isinstance(r.get("video_meta"), dict)) n_ts = sum(1 for r in rows if isinstance(r.get("ts_shape"), (list, tuple))) print(f"[ANNOTATE] wrote {jsonl_path}: {n_vm}/{len(rows)} video_meta, " f"{n_ts}/{len(rows)} ts_shape") def main() -> None: ap = argparse.ArgumentParser() ap.add_argument( "--annotate-only", action="store_true", help="Skip slicing/parsing. Probe existing clips+csvs and write " "video_meta / ts_shape back into --jsonl in place.", ) ap.add_argument("--jsonl", type=Path, help="[annotate-only mode] path to unified omnits jsonl to update in place.") ap.add_argument("--force", action="store_true", help="[annotate-only mode] re-probe rows that already have meta.") ap.add_argument("--in-jsonl", type=Path) ap.add_argument("--out-jsonl", type=Path) ap.add_argument("--csv-dir", type=Path) ap.add_argument("--clip-dir", type=Path) ap.add_argument( "--dataset-name", default="dataset", help="Prefix used when rows do not already contain video_id.", ) ap.add_argument("--limit", type=int, default=None, help="First N rows only (smoke).") ap.add_argument( "--num-workers", type=int, default=1, help="Parallel ffmpeg / probe workers. 1 = sequential.", ) ap.add_argument( "--prompt-only", action="store_true", help="Refresh prompts only: reuse existing TS CSVs and video clips, " "skip ffmpeg slicing and TS parsing. Fails if derived files are missing.", ) ap.add_argument( "--slice-full-video", action="store_true", help="When a row has no temporal bounds, still rewrite the whole video with ffmpeg. " "Default is to copy the already-segmented video into --clip-dir.", ) ap.add_argument( "--skip-errors", action="store_true", help="Skip rows that fail conversion and report their line numbers instead of stopping.", ) ap.add_argument("--source-root", type=Path, help="Base directory for relative input video paths.") ap.add_argument("--path-map", action="append", default=[], metavar="OLD=NEW", help="Remap a legacy path prefix; repeat for multiple roots.") args = ap.parse_args() path_maps = [] for item in args.path_map: if "=" not in item: ap.error("--path-map must have the form OLD=NEW") path_maps.append(tuple(item.split("=", 1))) if args.annotate_only: if args.jsonl is None: ap.error("--annotate-only requires --jsonl") _annotate_only(args.jsonl, args.num_workers, args.force) return missing = [n for n in ("in_jsonl", "out_jsonl", "csv_dir", "clip_dir") if getattr(args, n) is None] if missing: ap.error(f"missing required args for conversion: {missing}") args.out_jsonl.parent.mkdir(parents=True, exist_ok=True) entries: list[dict] = [] with args.in_jsonl.open() as fin: for line_no, line in enumerate(fin, 1): if args.limit is not None and line_no > args.limit: break entry = json.loads(line) raw = entry["video_path"] for old, new in path_maps: if raw == old or raw.startswith(old.rstrip("/") + "/"): raw = new.rstrip("/") + raw[len(old.rstrip("/")):] break source_video = Path(raw).expanduser() if not source_video.is_absolute(): source_video = (args.source_root or args.in_jsonl.resolve().parent) / source_video entry["video_path"] = str(source_video.resolve()) entry["_line_no"] = line_no entries.append(entry) fout = args.out_jsonl.open("w") n = 0 skipped: list[tuple[int, str]] = [] if args.num_workers <= 1: fps_cache: dict[Path, float] = {} try: for entry in entries: line_no = entry.pop("_line_no") try: row = convert_entry( entry, csv_dir=args.csv_dir, clip_dir=args.clip_dir, fps_cache=fps_cache, prompt_only=args.prompt_only, dataset_name=args.dataset_name, copy_full_video=not args.slice_full_video, ) except (ValueError, KeyError, RuntimeError, subprocess.CalledProcessError) as exc: if args.skip_errors: skipped.append((line_no, str(exc))) continue raise RuntimeError(f"line {line_no}: {exc}") from exc fout.write(json.dumps(row, ensure_ascii=False) + "\n") n += 1 finally: fout.close() else: # Parallel: write rows as they complete (no order guarantee — shuffle-safe). work = [ ( e, str(args.csv_dir), str(args.clip_dir), args.prompt_only, args.dataset_name, not args.slice_full_video, ) for e in entries ] try: with ProcessPoolExecutor(max_workers=args.num_workers) as pool: for future in as_completed( [pool.submit(_worker_convert, w) for w in work] ): try: _line_no, row = future.result() except Exception as exc: if args.skip_errors: skipped.append((-1, str(exc))) continue raise fout.write(json.dumps(row, ensure_ascii=False) + "\n") fout.flush() n += 1 if n % 200 == 0: print(f" converted {n}/{len(entries)}", flush=True) finally: fout.close() print(f"converted {n} entries → {args.out_jsonl}") if skipped: print(f"skipped {len(skipped)} entries") for line_no, reason in skipped[:20]: location = f"line {line_no}" if line_no > 0 else "worker" print(f" {location}: {reason}") if len(skipped) > 20: print(f" ... {len(skipped) - 20} more") if __name__ == "__main__": main()