import json import os import shutil from tqdm import tqdm import argparse def read_jsonl(path): data_list = [] try: with open(path, "r", encoding="utf-8") as file: for line in tqdm(file, desc="Reading JSONL file"): data = json.loads(line) data_list.append(data) return data_list except FileNotFoundError: raise FileNotFoundError(f"Error: File {path} not found.") except json.JSONDecodeError: raise json.JSONDecodeError(f"Error: Invalid JSON format in file {path}.") except Exception as e: raise Exception(f"An unexpected error occurred while reading {path}: {e}") def main(): """ Main function to process metadata and copy relevant files from iNaturalist test data. """ # Set up argument parser parser = argparse.ArgumentParser(description="Process iNaturalist data.") parser.add_argument("--data_folder", type=str, required=True, help="Path to the iNaturalist test folder.") args = parser.parse_args() try: # Define the source folder containing the original files data_folder = args.data_folder meta_data = read_jsonl("meta_data.jsonl") # Copying iNaturalist test data in the metadata for data in tqdm(meta_data, desc="Copying iNaturalist test data"): if data["task_id"][0] == "BIU02": tmp_path = data["input_ts"]["path"] target_folder = os.path.dirname(tmp_path) # Create the target folder if it doesn't exist os.makedirs(target_folder, exist_ok=True) # Extract the file name and parent folder from the path data_name = os.path.basename(tmp_path).split("_")[-1] folder = os.path.basename(tmp_path).replace(data_name, "")[:-1] # Copy the file if it doesn't exist in the target path if not os.path.exists(tmp_path): source_path = os.path.join(data_folder, os.path.join(folder, data_name)) try: shutil.copy(source_path, tmp_path) except FileNotFoundError: print(f"Warning: Source file {source_path} not found. Skipping.") except Exception as e: print(f"Warning: Failed to copy {source_path} to {tmp_path}. Error: {e}") except Exception as e: print(f"An error occurred during execution: {e}") if __name__ == "__main__": main()