scripts/04_diffusion/evaluate_diffusion_pll_only.sh

#!/usr/bin/env bash
set -euo pipefail

SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
source "${SCRIPT_DIR}/../00_setup/env.sh"

cd "${GENERANNO_DIR}"
python3 src/tasks/downstream/discrete_diffusion_evaluate.py \
  --diffusion_model "${DIFFUSION_MODEL}" \
  --base_model_for_code "${GENERANNO_BASE_MODEL}" \
  --dataset_dir "${DEEPSTARR_DIR}" \
  --split valid \
  --conditioned \
  --num_per_bucket "${NUM_PER_BUCKET:-128}" \
  --sequence_length "${SEQUENCE_LENGTH:-246}" \
  --num_diffusion_steps "${NUM_DIFFUSION_STEPS:-64}" \
  --batch_size "${DIFFUSION_EVAL_BATCH_SIZE:-8192}" \
  --score_batch_size "${DIFFUSION_SCORE_BATCH_SIZE:-1024}" \
  --pll_chunk_size "${PLL_CHUNK_SIZE:-64}" \
  --max_length "${DIFFUSION_MAX_LENGTH:-256}" \
  --temperature "${DIFFUSION_TEMPERATURE:-1.0}" \
  --bf16 \
  --output_dir "${RESULT_ROOT}/diffusion_valid_pll"