| #!/usr/bin/env bash |
| set -euo pipefail |
|
|
| SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" |
| source "${SCRIPT_DIR}/../00_setup/env.sh" |
|
|
| bash "${SCRIPT_DIR}/../01_data/download_deepstarr.sh" |
| bash "${SCRIPT_DIR}/../01_data/summarize_deepstarr.sh" |
| bash "${SCRIPT_DIR}/../01_data/prepare_conditioned_deepstarr.sh" |
| bash "${SCRIPT_DIR}/../01_data/make_random_gc_baseline.sh" |
|
|
| bash "${SCRIPT_DIR}/../02_predictor/train_predictor.sh" |
| bash "${SCRIPT_DIR}/../02_predictor/plot_predictor_validation.sh" |
|
|
| bash "${SCRIPT_DIR}/../03_ar_generation/train_ar_unconditional.sh" |
| bash "${SCRIPT_DIR}/../03_ar_generation/train_ar_conditioned.sh" |
| bash "${SCRIPT_DIR}/../03_ar_generation/evaluate_ar_unconditional.sh" |
| bash "${SCRIPT_DIR}/../03_ar_generation/evaluate_ar_conditioned.sh" |
|
|
| bash "${SCRIPT_DIR}/../05_scoring/score_ar_unconditional.sh" |
| bash "${SCRIPT_DIR}/../05_scoring/score_ar_conditioned.sh" |
|
|
| bash "${SCRIPT_DIR}/../04_diffusion/train_diffusion_conditioned.sh" |
| bash "${SCRIPT_DIR}/../04_diffusion/evaluate_diffusion_pll_only.sh" |
| bash "${SCRIPT_DIR}/../04_diffusion/evaluate_diffusion_with_predictor.sh" |
|
|
| bash "${SCRIPT_DIR}/../06_sequence_metrics/compute_sequence_metrics.sh" |
| bash "${SCRIPT_DIR}/../08_visualization/make_paper_figures.sh" |
|
|
| echo "Core paper experiments completed under ${RUN_ROOT}" |
|
|
