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@article{zrimec2022expressiongan,
  title = {Controlling gene expression with deep generative design of regulatory DNA},
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  year = {2022},
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@article{taskiran2024celltypedirected,
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  year = {2024},
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@article{gosai2024coda,
  title = {Machine-guided design of cell-type-targeting cis-regulatory elements},
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@article{dasilva2026dnadiffusion,
  title = {Designing synthetic regulatory elements using the generative AI framework DNA-Diffusion},
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@article{sarkar2024d3,
  title = {Designing DNA With Tunable Regulatory Activity Using Score-Entropy Discrete Diffusion},
  author = {Sarkar, Anirban and Kang, Yijie and Somia, Nirali and Mantilla Puccetti, Pablo and Zhou, Jessica and Nagai, Masayuki and Tang, Ziqi and Zhao, Chris and Koo, Peter K.},
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@article{wang2024drakes,
  title = {Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design},
  author = {Wang, Chenyu and Uehara, Masatoshi and He, Yichun and Wang, Amy and Biancalani, Tommaso and Lal, Avantika and Jaakkola, Tommi and Levine, Sergey and Wang, Hanchen and Regev, Aviv},
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@article{su2025atgcgen,
  title = {Language Models for Controllable DNA Sequence Design},
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  journal = {arXiv preprint arXiv:2507.19523},
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@article{yang2025rldna,
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  journal = {arXiv preprint arXiv:2503.07981},
  year = {2025},
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}