#!/usr/bin/env bash
set -euo pipefail

SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
source "${SCRIPT_DIR}/../00_setup/env.sh"

cd "${GENERATOR_DIR}"
python3 src/tasks/downstream/prepare_conditioned_deepstarr.py \
  --input_dir "${DEEPSTARR_DIR}" \
  --output_dir "${CONDITIONED_DEEPSTARR_DIR}" \
  --sequence_col sequence \
  --label_col label \
  --score_mode sum \
  --low_quantile 0.25 \
  --high_quantile 0.75 \
  --trim_multiple 6