#!/usr/bin/env python3 import argparse import json from pathlib import Path import numpy as np import pandas as pd def label_values(value): if hasattr(value, "tolist"): value = value.tolist() return [float(value[0]), float(value[1])] def summarize_split(path: Path): df = pd.read_parquet(path) seq = df["sequence"].astype(str) labels = np.asarray([label_values(v) for v in df["label"]], dtype=float) return { "rows": int(len(df)), "sequence_length_min": int(seq.str.len().min()), "sequence_length_median": float(seq.str.len().median()), "sequence_length_max": int(seq.str.len().max()), "label_0_mean": float(labels[:, 0].mean()), "label_1_mean": float(labels[:, 1].mean()), "label_sum_mean": float(labels.sum(axis=1).mean()), } def main(): parser = argparse.ArgumentParser(description="Summarize DeepSTARR parquet splits.") parser.add_argument("--dataset_dir", required=True) parser.add_argument("--output_json", required=True) args = parser.parse_args() dataset_dir = Path(args.dataset_dir) summary = {} for split in ["train", "valid", "test"]: path = dataset_dir / f"{split}.parquet" if path.exists(): summary[split] = summarize_split(path) output_path = Path(args.output_json) output_path.parent.mkdir(parents=True, exist_ok=True) output_path.write_text(json.dumps(summary, indent=2), encoding="utf-8") print(output_path) if __name__ == "__main__": main()