#!/usr/bin/env bash
set -euo pipefail

SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
source "${SCRIPT_DIR}/../00_setup/env.sh"

python3 "${SCRIPT_DIR}/compute_sequence_metrics.py" \
  --dataset_dir "${DEEPSTARR_DIR}" \
  --reference_split valid \
  --input "ar_unconditional=${RESULT_ROOT}/ar_unconditional_scoring/scoring_details.jsonl" \
  --input "ar_conditioned=${RESULT_ROOT}/ar_conditioned_scoring/scoring_details.jsonl" \
  --input "diffusion_conditioned=${RESULT_ROOT}/diffusion_valid_predictor/diffusion_scoring_details.jsonl" \
  --input "random_gc_matched=${RESULT_ROOT}/controls/random_gc_matched.jsonl" \
  --output_dir "${RESULT_ROOT}/sequence_metrics" \
  --k_values 3,4