evaluate_ar_conditioned.sh

#!/usr/bin/env bash
set -euo pipefail

SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
source "${SCRIPT_DIR}/../00_setup/env.sh"

for filename in modeling_generator.py tokenizer.py; do
  if [[ -f "${GENERATOR_BASE_MODEL}/${filename}" && ! -f "${AR_COND_MODEL}/${filename}" ]]; then
    cp "${GENERATOR_BASE_MODEL}/${filename}" "${AR_COND_MODEL}/${filename}"
  fi
done

cd "${GENERATOR_DIR}"
python3 src/tasks/downstream/generation_validation.py \
  --model_name "${AR_COND_MODEL}" \
  --parquet_path "${CONDITIONED_DEEPSTARR_DIR}/valid.parquet" \
  --sequence_col conditioned_sequence \
  --conditioned_input \
  --output_dir "${RESULT_ROOT}/ar_conditioned_valid" \
  --num_samples "${NUM_GENERATION_SAMPLES:-384}" \
  --prompt_bp_length "${PROMPT_BP_LENGTH:-120}" \
  --continuation_bp_length "${CONTINUATION_BP_LENGTH:-126}" \
  --batch_size "${GEN_BATCH_SIZE:-512}" \
  --attn_implementation "${ATTN_IMPLEMENTATION:-sdpa}" \
  --bf16 \
  --report_to none \
  --run_name ar_conditioned_valid