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README.md
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# 📘 JunoBench: A Benchmark Dataset of Crashes in Machine Learning Python Jupyter Notebooks
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## 📂 Contents
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The ML library distribution is as follows:
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## 🛠 Usage
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### 📄 Reproducing Environment Option 1 (recommended): using our shared Docker image
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To ensure full reproducibility (including Python version, system libraries, and all dependencies), you can use our compiled docker image directly:
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```
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docker pull yarinamomo/kaggle_python_env:latest
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```
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```
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docker run -v [volumn mount windows path]:/junobench_env -w=/junobench_env -p 8888:8888 -it yarinamomo/kaggle_python_env:latest jupyter notebook --no-browser --ip="0.0.0.0" --notebook-dir=/junobench_env --allow-root
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```
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### 📄 Reproducing Environment Option 2: build your own Docker image
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You can also choose to build your own docker image by using our pre-configured Docker image from this repository:
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📦 GitHub Repo: [yarinamomo/docker-kaggle-python](https://github.com/yarinamomo/docker-kaggle-python)
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### 📄 Reproducing Environment - Option 3: using virtual envrironment (not recommended)
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You can recreate the Python environment on your system as follows:
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#### Requirements
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- Python 3.10
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- `pip`, `venv`, and basic build tools
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- [requirements.txt](./requirements.txt)
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#### Setup Instructions
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**Linux** or **WSL** on Windows (the same requirements file as in the Docker image):
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```bash
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# Create a virtual environment
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python3.10 -m venv venv
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source venv/bin/activate
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# Install required packages
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pip install -r requirements.txt
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```
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### 🐳 Execute notebooks with `auto_notebook_executer.py`:
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You can execute the notebooks by using this tool. This tool can be used by command line:
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For notebook specific errors (NBspecific_1-20), there maybe due to one cell being executed more than once. For those cases, the cells with an identifier "[reexecute]" or "[re-execute]" should be executed twice consecutively.
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## 📖 Citation
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If you use this dataset in your research, please cite:
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[todo]
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## 📝 License & Attribution
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This project is for academic research purposes only.
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# 📘 JunoBench: A Benchmark Dataset of Crashes in Machine Learning Python Jupyter Notebooks
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This repository is the compiled benchmark dataset of paper "JunoBench: A Benchmark Dataset of Crashes in Machine Learning Python Jupyter Notebooks". The code repository of constructing the benchmark is on GitHub: [JunoBench_construct](https://github.com/PELAB-LiU/JunoBench_construct). This dataset is suitable for studying crashes (e.g., bug reproducing, detection, diagnose, localization, and repair) in ML notebooks.
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## 📂 Contents
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This benchmark dataset contains 111 reproducible ML notebooks with crashes, each paired with a verifiable fix. It covers a broad range of popular ML libraries, including TensorFlow/Keras, PyTorch, Scikit-learn, Pandas, and NumPy, as well as notebook-specific out-of-order execution issue. To support reproducibility and ease of use, JunoBench offers a unified execution environment in which all crashes and fixes can be reliably reproduced.
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The ML library distribution is as follows:
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## 🛠 Usage
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### 📄 Environment: using our shared Docker image
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We compiled a docker image to ensure full reproducibility (including Python version, system libraries, and all dependencies):
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```
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docker pull yarinamomo/kaggle_python_env:latest
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```
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To run the image:
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```
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docker run -v [volumn mount windows path]:/junobench_env -w=/junobench_env -p 8888:8888 -it yarinamomo/kaggle_python_env:latest jupyter notebook --no-browser --ip="0.0.0.0" --notebook-dir=/junobench_env --allow-root
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```
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### 🐳 Execute notebooks with `auto_notebook_executer.py`:
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You can execute the notebooks by using this tool. This tool can be used by command line:
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For notebook specific errors (NBspecific_1-20), there maybe due to one cell being executed more than once. For those cases, the cells with an identifier "[reexecute]" or "[re-execute]" should be executed twice consecutively.
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## 📝 License & Attribution
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This project is for academic research purposes only.
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