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curl -L -o quick_check.py https://huggingface.co/datasets/PHMbench/PHM-Vibench/resolve/69bc451d5eeafc7bf57f94de14187c994e041297/scripts/quick_check.py
15.5 kB
| #!/usr/bin/env python3 | |
| """ | |
| PHM-Vibench Metadata 快速验证和修复脚本 | |
| 用于检查和修复 metadata_25_10_30.xlsx 中的关键问题 | |
| """ | |
| import pandas as pd | |
| import numpy as np | |
| import h5py | |
| import os | |
| from datetime import datetime | |
| import json | |
| import sys | |
| class MetadataChecker: | |
| def __init__(self): | |
| self.base_path = '/home/user/data/PHMbenchdata/PHM-Vibench' | |
| self.metadata_path = os.path.join(self.base_path, 'metadata_25_10_30.xlsx') | |
| self.h5_path = os.path.join(self.base_path, 'metadata_6_1.h5') | |
| self.backup_path = os.path.join(self.base_path, 'backups') | |
| self.log_path = os.path.join(self.base_path, 'log') | |
| # 确保目录存在 | |
| os.makedirs(self.backup_path, exist_ok=True) | |
| os.makedirs(self.log_path, exist_ok=True) | |
| def load_metadata(self): | |
| """加载metadata文件""" | |
| print(f"📂 加载 metadata 文件: {self.metadata_path}") | |
| self.df = pd.read_excel(self.metadata_path) | |
| print(f"✅ 成功加载 {len(self.df)} 条记录") | |
| def check_h5_data(self): | |
| """检查H5文件中的实际数据维度""" | |
| print("\n🔍 检查 H5 文件数据维度...") | |
| if not os.path.exists(self.h5_path): | |
| print(f"❌ H5文件不存在: {self.h5_path}") | |
| return | |
| with h5py.File(self.h5_path, 'r') as f: | |
| # Dataset_id 18 对应的Id范围: 47288-47566 | |
| print("\n=== Dataset_id 18 (Id: 47288-47566) ===") | |
| shapes_18 = [] | |
| for i in range(47288, min(47298, 47567)): # 检查前10个 | |
| key = str(i) | |
| if key in f: | |
| data = f[key][()] | |
| if isinstance(data, np.ndarray): | |
| shapes_18.append(data.shape) | |
| print(f" Id {i}: shape={data.shape}") | |
| # Dataset_id 20 对应的Id范围: 47567-50126 | |
| print("\n=== Dataset_id 20 (Id: 47567-47577) ===") | |
| shapes_20 = [] | |
| for i in range(47567, min(47577, 50127)): # 检查前10个 | |
| key = str(i) | |
| if key in f: | |
| data = f[key][()] | |
| if isinstance(data, np.ndarray): | |
| shapes_20.append(data.shape) | |
| print(f" Id {i}: shape={data.shape}") | |
| # 更多抽样检查 | |
| print("\n=== 抽样统计 ===") | |
| for i in range(47288, 47567, 20): # 每20个抽样 | |
| key = str(i) | |
| if key in f: | |
| data = f[key][()] | |
| if isinstance(data, np.ndarray): | |
| shapes_18.append(data.shape) | |
| for i in range(47567, 50127, 100): # 每100个抽样 | |
| key = str(i) | |
| if key in f: | |
| data = f[key][()] | |
| if isinstance(data, np.ndarray): | |
| shapes_20.append(data.shape) | |
| if shapes_18: | |
| unique_shapes_18 = set(shapes_18) | |
| print(f"\nDataset_id 18 数据维度分布:") | |
| for shape in unique_shapes_18: | |
| count = shapes_18.count(shape) | |
| print(f" {shape}: {count} 次") | |
| if shapes_20: | |
| unique_shapes_20 = set(shapes_20) | |
| print(f"\nDataset_id 20 数据维度分布:") | |
| for shape in unique_shapes_20: | |
| count = shapes_20.count(shape) | |
| print(f" {shape}: {count} 次") | |
| # 保存检查结果 | |
| self.h5_shapes_18 = shapes_18 if shapes_18 else [] | |
| self.h5_shapes_20 = shapes_20 if shapes_20 else [] | |
| def analyze_metadata_issues(self): | |
| """分析metadata中的问题""" | |
| print("\n📊 分析 metadata 问题...") | |
| # Dataset_id 18 | |
| df_18 = self.df[self.df['Dataset_id'] == 18] | |
| print(f"\nDataset_id 18:") | |
| print(f" 记录数: {len(df_18)}") | |
| if len(df_18) > 0: | |
| print(f" Channel: {df_18['Channel'].unique()}") | |
| print(f" Sample_lenth: {df_18['Sample_lenth'].unique()}") | |
| print(f" Name: {df_18['Name'].unique()}") | |
| self.meta_channel_18 = df_18['Channel'].iloc[0] | |
| self.meta_length_18 = df_18['Sample_lenth'].iloc[0] | |
| # Dataset_id 20 | |
| df_20 = self.df[self.df['Dataset_id'] == 20] | |
| print(f"\nDataset_id 20:") | |
| print(f" 记录数: {len(df_20)}") | |
| if len(df_20) > 0: | |
| print(f" Channel: {df_20['Channel'].unique()}") | |
| print(f" Sample_lenth: {df_20['Sample_lenth'].unique()}") | |
| print(f" Name: {df_20['Name'].unique()}") | |
| self.meta_channel_20 = df_20['Channel'].iloc[0] | |
| self.meta_length_20 = df_20['Sample_lenth'].iloc[0] | |
| def identify_issues(self): | |
| """识别需要修复的问题""" | |
| print("\n⚠️ 识别问题...") | |
| self.issues = [] | |
| # 检查Dataset_id 18 | |
| if hasattr(self, 'h5_shapes_18') and self.h5_shapes_18: | |
| # 统计各种形状的出现次数 | |
| shape_counts_18 = {} | |
| for shape in self.h5_shapes_18: | |
| shape_counts_18[shape] = shape_counts_18.get(shape, 0) + 1 | |
| # 找出最常见的形状 | |
| most_common_shape = max(shape_counts_18.items(), key=lambda x: x[1]) | |
| actual_length = int(most_common_shape[0][0]) | |
| actual_channels = int(most_common_shape[0][1]) | |
| print(f"\nDataset_id 18 维度统计:") | |
| for shape, count in sorted(shape_counts_18.items(), key=lambda x: x[1], reverse=True)[:5]: | |
| print(f" {shape}: {count}次") | |
| if self.meta_length_18 != actual_length: | |
| self.issues.append({ | |
| 'dataset_id': 18, | |
| 'type': 'sample_length_mismatch', | |
| 'metadata_value': self.meta_length_18, | |
| 'h5_value': actual_length, | |
| 'description': f"Sample_lenth不匹配: metadata={self.meta_length_18}, H5实际={actual_length}" | |
| }) | |
| if self.meta_channel_18 != actual_channels: | |
| self.issues.append({ | |
| 'dataset_id': 18, | |
| 'type': 'channel_mismatch', | |
| 'metadata_value': self.meta_channel_18, | |
| 'h5_value': actual_channels, | |
| 'description': f"Channel不匹配: metadata={self.meta_channel_18}, H5实际={actual_channels}" | |
| }) | |
| # 检查Dataset_id 20 | |
| if hasattr(self, 'h5_shapes_20') and self.h5_shapes_20: | |
| # 统计各种形状的出现次数 | |
| shape_counts_20 = {} | |
| for shape in self.h5_shapes_20: | |
| shape_counts_20[shape] = shape_counts_20.get(shape, 0) + 1 | |
| # 找出最常见的形状 | |
| most_common_shape = max(shape_counts_20.items(), key=lambda x: x[1]) | |
| actual_length = int(most_common_shape[0][0]) | |
| actual_channels = int(most_common_shape[0][1]) | |
| print(f"\nDataset_id 20 维度统计:") | |
| for shape, count in sorted(shape_counts_20.items(), key=lambda x: x[1], reverse=True)[:5]: | |
| print(f" {shape}: {count}次") | |
| if self.meta_length_20 != actual_length: | |
| self.issues.append({ | |
| 'dataset_id': 20, | |
| 'type': 'sample_length_mismatch', | |
| 'metadata_value': self.meta_length_20, | |
| 'h5_value': actual_length, | |
| 'description': f"Sample_lenth不匹配: metadata={self.meta_length_20}, H5实际={actual_length}" | |
| }) | |
| if self.meta_channel_20 != actual_channels: | |
| self.issues.append({ | |
| 'dataset_id': 20, | |
| 'type': 'channel_mismatch', | |
| 'metadata_value': self.meta_channel_20, | |
| 'h5_value': actual_channels, | |
| 'description': f"Channel不匹配: metadata={self.meta_channel_20}, H5实际={actual_channels}" | |
| }) | |
| # 输出问题汇总 | |
| if self.issues: | |
| print(f"\n发现 {len(self.issues)} 个问题:") | |
| for i, issue in enumerate(self.issues, 1): | |
| print(f"\n问题 {i}: Dataset_id {issue['dataset_id']}") | |
| print(f" 类型: {issue['type']}") | |
| print(f" 描述: {issue['description']}") | |
| else: | |
| print("\n✅ 未发现明显问题") | |
| def backup_metadata(self): | |
| """备份原始metadata文件""" | |
| timestamp = datetime.now().strftime("%Y%m%d_%H%M%S") | |
| backup_file = os.path.join(self.backup_path, f"metadata_25_10_30_backup_{timestamp}.xlsx") | |
| print(f"\n💾 备份原始文件到: {backup_file}") | |
| self.df.to_excel(backup_file, index=False) | |
| print("✅ 备份完成") | |
| return backup_file | |
| def fix_metadata(self): | |
| """修复metadata中的问题""" | |
| if not self.issues: | |
| print("\n✅ 没有需要修复的问题") | |
| return | |
| print("\n🔧 开始修复 metadata...") | |
| # 创建修复后的DataFrame副本 | |
| df_fixed = self.df.copy() | |
| fix_log = [] | |
| for issue in self.issues: | |
| dataset_id = issue['dataset_id'] | |
| if issue['type'] == 'sample_length_mismatch': | |
| mask = df_fixed['Dataset_id'] == dataset_id | |
| old_value = df_fixed.loc[mask, 'Sample_lenth'].iloc[0] | |
| new_value = issue['h5_value'] | |
| df_fixed.loc[mask, 'Sample_lenth'] = new_value | |
| fix_log.append({ | |
| 'dataset_id': dataset_id, | |
| 'field': 'Sample_lenth', | |
| 'old_value': old_value, | |
| 'new_value': new_value, | |
| 'records_affected': mask.sum() | |
| }) | |
| print(f" ✓ Dataset_id {dataset_id}: Sample_lenth {old_value} → {new_value}") | |
| elif issue['type'] == 'channel_mismatch': | |
| mask = df_fixed['Dataset_id'] == dataset_id | |
| old_value = df_fixed.loc[mask, 'Channel'].iloc[0] | |
| new_value = issue['h5_value'] | |
| df_fixed.loc[mask, 'Channel'] = new_value | |
| fix_log.append({ | |
| 'dataset_id': dataset_id, | |
| 'field': 'Channel', | |
| 'old_value': old_value, | |
| 'new_value': new_value, | |
| 'records_affected': mask.sum() | |
| }) | |
| print(f" ✓ Dataset_id {dataset_id}: Channel {old_value} → {new_value}") | |
| # 保存修复后的文件 | |
| fixed_file = os.path.join(self.base_path, 'metadata_25_10_30_fixed.xlsx') | |
| df_fixed.to_excel(fixed_file, index=False) | |
| print(f"\n✅ 修复后的文件保存到: {fixed_file}") | |
| # 保存修复日志 | |
| log_file = os.path.join(self.log_path, 'fix_log.json') | |
| # 转换numpy类型为python原生类型 | |
| issues_serializable = [] | |
| for issue in self.issues: | |
| issue_copy = issue.copy() | |
| if 'metadata_value' in issue_copy: | |
| issue_copy['metadata_value'] = int(issue_copy['metadata_value']) if hasattr(issue_copy['metadata_value'], 'dtype') else issue_copy['metadata_value'] | |
| if 'h5_value' in issue_copy: | |
| issue_copy['h5_value'] = int(issue_copy['h5_value']) if hasattr(issue_copy['h5_value'], 'dtype') else issue_copy['h5_value'] | |
| issues_serializable.append(issue_copy) | |
| fixes_serializable = [] | |
| for fix in fix_log: | |
| fix_copy = fix.copy() | |
| for key in ['old_value', 'new_value']: | |
| if key in fix_copy and hasattr(fix_copy[key], 'dtype'): | |
| fix_copy[key] = int(fix_copy[key]) | |
| if 'records_affected' in fix_copy and hasattr(fix_copy['records_affected'], 'dtype'): | |
| fix_copy['records_affected'] = int(fix_copy['records_affected']) | |
| fixes_serializable.append(fix_copy) | |
| with open(log_file, 'w', encoding='utf-8') as f: | |
| json.dump({ | |
| 'timestamp': datetime.now().isoformat(), | |
| 'issues_found': issues_serializable, | |
| 'fixes_applied': fixes_serializable | |
| }, f, indent=2, ensure_ascii=False) | |
| print(f"📝 修复日志保存到: {log_file}") | |
| self.df_fixed = df_fixed | |
| self.fix_log = fix_log | |
| def generate_report(self): | |
| """生成验证报告""" | |
| report = { | |
| 'timestamp': datetime.now().isoformat(), | |
| 'metadata_file': self.metadata_path, | |
| 'h5_file': self.h5_path, | |
| 'total_records': len(self.df), | |
| 'issues_found': len(self.issues) if hasattr(self, 'issues') else 0, | |
| 'dataset_analysis': { | |
| 'dataset_18': { | |
| 'id_range': '47288-47566', | |
| 'records': len(self.df[self.df['Dataset_id'] == 18]), | |
| 'metadata_channel': self.meta_channel_18 if hasattr(self, 'meta_channel_18') else None, | |
| 'metadata_length': self.meta_length_18 if hasattr(self, 'meta_length_18') else None | |
| }, | |
| 'dataset_20': { | |
| 'id_range': '47567-50126', | |
| 'records': len(self.df[self.df['Dataset_id'] == 20]), | |
| 'metadata_channel': self.meta_channel_20 if hasattr(self, 'meta_channel_20') else None, | |
| 'metadata_length': self.meta_length_20 if hasattr(self, 'meta_length_20') else None | |
| } | |
| } | |
| } | |
| report_file = os.path.join(self.log_path, 'validation_report.json') | |
| with open(report_file, 'w', encoding='utf-8') as f: | |
| json.dump(report, f, indent=2, ensure_ascii=False) | |
| print(f"\n📊 验证报告保存到: {report_file}") | |
| def run(self, auto_fix=False): | |
| """运行完整的验证和修复流程""" | |
| print("=" * 60) | |
| print("🚀 PHM-Vibench Metadata 验证和修复工具") | |
| print("=" * 60) | |
| # 1. 加载数据 | |
| self.load_metadata() | |
| # 2. 检查H5数据 | |
| self.check_h5_data() | |
| # 3. 分析metadata | |
| self.analyze_metadata_issues() | |
| # 4. 识别问题 | |
| self.identify_issues() | |
| # 5. 备份 | |
| backup_file = self.backup_metadata() | |
| # 6. 修复(如果需要) | |
| if auto_fix and self.issues: | |
| self.fix_metadata() | |
| # 7. 生成报告 | |
| self.generate_report() | |
| print("\n" + "=" * 60) | |
| print("✅ 验证完成!") | |
| print("=" * 60) | |
| if hasattr(self, 'issues') and self.issues: | |
| print(f"\n发现 {len(self.issues)} 个问题需要修复") | |
| print("使用 --fix 参数执行自动修复") | |
| else: | |
| print("\n✅ 未发现问题") | |
| def main(): | |
| import argparse | |
| parser = argparse.ArgumentParser(description='PHM-Vibench Metadata 验证和修复工具') | |
| parser.add_argument('--fix', action='store_true', help='自动修复发现的问题') | |
| parser.add_argument('--check-only', action='store_true', help='仅检查不修复') | |
| args = parser.parse_args() | |
| checker = MetadataChecker() | |
| if args.check_only: | |
| checker.run(auto_fix=False) | |
| else: | |
| checker.run(auto_fix=args.fix) | |
| if __name__ == "__main__": | |
| main() |