PHM-Vibench / scripts /quick_check.py
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#!/usr/bin/env python3
"""
PHM-Vibench Metadata 快速验证和修复脚本
用于检查和修复 metadata_25_10_30.xlsx 中的关键问题
"""
import pandas as pd
import numpy as np
import h5py
import os
from datetime import datetime
import json
import sys
class MetadataChecker:
def __init__(self):
self.base_path = '/home/user/data/PHMbenchdata/PHM-Vibench'
self.metadata_path = os.path.join(self.base_path, 'metadata_25_10_30.xlsx')
self.h5_path = os.path.join(self.base_path, 'metadata_6_1.h5')
self.backup_path = os.path.join(self.base_path, 'backups')
self.log_path = os.path.join(self.base_path, 'log')
# 确保目录存在
os.makedirs(self.backup_path, exist_ok=True)
os.makedirs(self.log_path, exist_ok=True)
def load_metadata(self):
"""加载metadata文件"""
print(f"📂 加载 metadata 文件: {self.metadata_path}")
self.df = pd.read_excel(self.metadata_path)
print(f"✅ 成功加载 {len(self.df)} 条记录")
def check_h5_data(self):
"""检查H5文件中的实际数据维度"""
print("\n🔍 检查 H5 文件数据维度...")
if not os.path.exists(self.h5_path):
print(f"❌ H5文件不存在: {self.h5_path}")
return
with h5py.File(self.h5_path, 'r') as f:
# Dataset_id 18 对应的Id范围: 47288-47566
print("\n=== Dataset_id 18 (Id: 47288-47566) ===")
shapes_18 = []
for i in range(47288, min(47298, 47567)): # 检查前10个
key = str(i)
if key in f:
data = f[key][()]
if isinstance(data, np.ndarray):
shapes_18.append(data.shape)
print(f" Id {i}: shape={data.shape}")
# Dataset_id 20 对应的Id范围: 47567-50126
print("\n=== Dataset_id 20 (Id: 47567-47577) ===")
shapes_20 = []
for i in range(47567, min(47577, 50127)): # 检查前10个
key = str(i)
if key in f:
data = f[key][()]
if isinstance(data, np.ndarray):
shapes_20.append(data.shape)
print(f" Id {i}: shape={data.shape}")
# 更多抽样检查
print("\n=== 抽样统计 ===")
for i in range(47288, 47567, 20): # 每20个抽样
key = str(i)
if key in f:
data = f[key][()]
if isinstance(data, np.ndarray):
shapes_18.append(data.shape)
for i in range(47567, 50127, 100): # 每100个抽样
key = str(i)
if key in f:
data = f[key][()]
if isinstance(data, np.ndarray):
shapes_20.append(data.shape)
if shapes_18:
unique_shapes_18 = set(shapes_18)
print(f"\nDataset_id 18 数据维度分布:")
for shape in unique_shapes_18:
count = shapes_18.count(shape)
print(f" {shape}: {count} 次")
if shapes_20:
unique_shapes_20 = set(shapes_20)
print(f"\nDataset_id 20 数据维度分布:")
for shape in unique_shapes_20:
count = shapes_20.count(shape)
print(f" {shape}: {count} 次")
# 保存检查结果
self.h5_shapes_18 = shapes_18 if shapes_18 else []
self.h5_shapes_20 = shapes_20 if shapes_20 else []
def analyze_metadata_issues(self):
"""分析metadata中的问题"""
print("\n📊 分析 metadata 问题...")
# Dataset_id 18
df_18 = self.df[self.df['Dataset_id'] == 18]
print(f"\nDataset_id 18:")
print(f" 记录数: {len(df_18)}")
if len(df_18) > 0:
print(f" Channel: {df_18['Channel'].unique()}")
print(f" Sample_lenth: {df_18['Sample_lenth'].unique()}")
print(f" Name: {df_18['Name'].unique()}")
self.meta_channel_18 = df_18['Channel'].iloc[0]
self.meta_length_18 = df_18['Sample_lenth'].iloc[0]
# Dataset_id 20
df_20 = self.df[self.df['Dataset_id'] == 20]
print(f"\nDataset_id 20:")
print(f" 记录数: {len(df_20)}")
if len(df_20) > 0:
print(f" Channel: {df_20['Channel'].unique()}")
print(f" Sample_lenth: {df_20['Sample_lenth'].unique()}")
print(f" Name: {df_20['Name'].unique()}")
self.meta_channel_20 = df_20['Channel'].iloc[0]
self.meta_length_20 = df_20['Sample_lenth'].iloc[0]
def identify_issues(self):
"""识别需要修复的问题"""
print("\n⚠️ 识别问题...")
self.issues = []
# 检查Dataset_id 18
if hasattr(self, 'h5_shapes_18') and self.h5_shapes_18:
# 统计各种形状的出现次数
shape_counts_18 = {}
for shape in self.h5_shapes_18:
shape_counts_18[shape] = shape_counts_18.get(shape, 0) + 1
# 找出最常见的形状
most_common_shape = max(shape_counts_18.items(), key=lambda x: x[1])
actual_length = int(most_common_shape[0][0])
actual_channels = int(most_common_shape[0][1])
print(f"\nDataset_id 18 维度统计:")
for shape, count in sorted(shape_counts_18.items(), key=lambda x: x[1], reverse=True)[:5]:
print(f" {shape}: {count}次")
if self.meta_length_18 != actual_length:
self.issues.append({
'dataset_id': 18,
'type': 'sample_length_mismatch',
'metadata_value': self.meta_length_18,
'h5_value': actual_length,
'description': f"Sample_lenth不匹配: metadata={self.meta_length_18}, H5实际={actual_length}"
})
if self.meta_channel_18 != actual_channels:
self.issues.append({
'dataset_id': 18,
'type': 'channel_mismatch',
'metadata_value': self.meta_channel_18,
'h5_value': actual_channels,
'description': f"Channel不匹配: metadata={self.meta_channel_18}, H5实际={actual_channels}"
})
# 检查Dataset_id 20
if hasattr(self, 'h5_shapes_20') and self.h5_shapes_20:
# 统计各种形状的出现次数
shape_counts_20 = {}
for shape in self.h5_shapes_20:
shape_counts_20[shape] = shape_counts_20.get(shape, 0) + 1
# 找出最常见的形状
most_common_shape = max(shape_counts_20.items(), key=lambda x: x[1])
actual_length = int(most_common_shape[0][0])
actual_channels = int(most_common_shape[0][1])
print(f"\nDataset_id 20 维度统计:")
for shape, count in sorted(shape_counts_20.items(), key=lambda x: x[1], reverse=True)[:5]:
print(f" {shape}: {count}次")
if self.meta_length_20 != actual_length:
self.issues.append({
'dataset_id': 20,
'type': 'sample_length_mismatch',
'metadata_value': self.meta_length_20,
'h5_value': actual_length,
'description': f"Sample_lenth不匹配: metadata={self.meta_length_20}, H5实际={actual_length}"
})
if self.meta_channel_20 != actual_channels:
self.issues.append({
'dataset_id': 20,
'type': 'channel_mismatch',
'metadata_value': self.meta_channel_20,
'h5_value': actual_channels,
'description': f"Channel不匹配: metadata={self.meta_channel_20}, H5实际={actual_channels}"
})
# 输出问题汇总
if self.issues:
print(f"\n发现 {len(self.issues)} 个问题:")
for i, issue in enumerate(self.issues, 1):
print(f"\n问题 {i}: Dataset_id {issue['dataset_id']}")
print(f" 类型: {issue['type']}")
print(f" 描述: {issue['description']}")
else:
print("\n✅ 未发现明显问题")
def backup_metadata(self):
"""备份原始metadata文件"""
timestamp = datetime.now().strftime("%Y%m%d_%H%M%S")
backup_file = os.path.join(self.backup_path, f"metadata_25_10_30_backup_{timestamp}.xlsx")
print(f"\n💾 备份原始文件到: {backup_file}")
self.df.to_excel(backup_file, index=False)
print("✅ 备份完成")
return backup_file
def fix_metadata(self):
"""修复metadata中的问题"""
if not self.issues:
print("\n✅ 没有需要修复的问题")
return
print("\n🔧 开始修复 metadata...")
# 创建修复后的DataFrame副本
df_fixed = self.df.copy()
fix_log = []
for issue in self.issues:
dataset_id = issue['dataset_id']
if issue['type'] == 'sample_length_mismatch':
mask = df_fixed['Dataset_id'] == dataset_id
old_value = df_fixed.loc[mask, 'Sample_lenth'].iloc[0]
new_value = issue['h5_value']
df_fixed.loc[mask, 'Sample_lenth'] = new_value
fix_log.append({
'dataset_id': dataset_id,
'field': 'Sample_lenth',
'old_value': old_value,
'new_value': new_value,
'records_affected': mask.sum()
})
print(f" ✓ Dataset_id {dataset_id}: Sample_lenth {old_value} → {new_value}")
elif issue['type'] == 'channel_mismatch':
mask = df_fixed['Dataset_id'] == dataset_id
old_value = df_fixed.loc[mask, 'Channel'].iloc[0]
new_value = issue['h5_value']
df_fixed.loc[mask, 'Channel'] = new_value
fix_log.append({
'dataset_id': dataset_id,
'field': 'Channel',
'old_value': old_value,
'new_value': new_value,
'records_affected': mask.sum()
})
print(f" ✓ Dataset_id {dataset_id}: Channel {old_value} → {new_value}")
# 保存修复后的文件
fixed_file = os.path.join(self.base_path, 'metadata_25_10_30_fixed.xlsx')
df_fixed.to_excel(fixed_file, index=False)
print(f"\n✅ 修复后的文件保存到: {fixed_file}")
# 保存修复日志
log_file = os.path.join(self.log_path, 'fix_log.json')
# 转换numpy类型为python原生类型
issues_serializable = []
for issue in self.issues:
issue_copy = issue.copy()
if 'metadata_value' in issue_copy:
issue_copy['metadata_value'] = int(issue_copy['metadata_value']) if hasattr(issue_copy['metadata_value'], 'dtype') else issue_copy['metadata_value']
if 'h5_value' in issue_copy:
issue_copy['h5_value'] = int(issue_copy['h5_value']) if hasattr(issue_copy['h5_value'], 'dtype') else issue_copy['h5_value']
issues_serializable.append(issue_copy)
fixes_serializable = []
for fix in fix_log:
fix_copy = fix.copy()
for key in ['old_value', 'new_value']:
if key in fix_copy and hasattr(fix_copy[key], 'dtype'):
fix_copy[key] = int(fix_copy[key])
if 'records_affected' in fix_copy and hasattr(fix_copy['records_affected'], 'dtype'):
fix_copy['records_affected'] = int(fix_copy['records_affected'])
fixes_serializable.append(fix_copy)
with open(log_file, 'w', encoding='utf-8') as f:
json.dump({
'timestamp': datetime.now().isoformat(),
'issues_found': issues_serializable,
'fixes_applied': fixes_serializable
}, f, indent=2, ensure_ascii=False)
print(f"📝 修复日志保存到: {log_file}")
self.df_fixed = df_fixed
self.fix_log = fix_log
def generate_report(self):
"""生成验证报告"""
report = {
'timestamp': datetime.now().isoformat(),
'metadata_file': self.metadata_path,
'h5_file': self.h5_path,
'total_records': len(self.df),
'issues_found': len(self.issues) if hasattr(self, 'issues') else 0,
'dataset_analysis': {
'dataset_18': {
'id_range': '47288-47566',
'records': len(self.df[self.df['Dataset_id'] == 18]),
'metadata_channel': self.meta_channel_18 if hasattr(self, 'meta_channel_18') else None,
'metadata_length': self.meta_length_18 if hasattr(self, 'meta_length_18') else None
},
'dataset_20': {
'id_range': '47567-50126',
'records': len(self.df[self.df['Dataset_id'] == 20]),
'metadata_channel': self.meta_channel_20 if hasattr(self, 'meta_channel_20') else None,
'metadata_length': self.meta_length_20 if hasattr(self, 'meta_length_20') else None
}
}
}
report_file = os.path.join(self.log_path, 'validation_report.json')
with open(report_file, 'w', encoding='utf-8') as f:
json.dump(report, f, indent=2, ensure_ascii=False)
print(f"\n📊 验证报告保存到: {report_file}")
def run(self, auto_fix=False):
"""运行完整的验证和修复流程"""
print("=" * 60)
print("🚀 PHM-Vibench Metadata 验证和修复工具")
print("=" * 60)
# 1. 加载数据
self.load_metadata()
# 2. 检查H5数据
self.check_h5_data()
# 3. 分析metadata
self.analyze_metadata_issues()
# 4. 识别问题
self.identify_issues()
# 5. 备份
backup_file = self.backup_metadata()
# 6. 修复(如果需要)
if auto_fix and self.issues:
self.fix_metadata()
# 7. 生成报告
self.generate_report()
print("\n" + "=" * 60)
print("✅ 验证完成!")
print("=" * 60)
if hasattr(self, 'issues') and self.issues:
print(f"\n发现 {len(self.issues)} 个问题需要修复")
print("使用 --fix 参数执行自动修复")
else:
print("\n✅ 未发现问题")
def main():
import argparse
parser = argparse.ArgumentParser(description='PHM-Vibench Metadata 验证和修复工具')
parser.add_argument('--fix', action='store_true', help='自动修复发现的问题')
parser.add_argument('--check-only', action='store_true', help='仅检查不修复')
args = parser.parse_args()
checker = MetadataChecker()
if args.check_only:
checker.run(auto_fix=False)
else:
checker.run(auto_fix=args.fix)
if __name__ == "__main__":
main()