#!/usr/bin/env python3 """Inspect downloaded PHM-Vibench metadata and H5 samples locally.""" from __future__ import annotations import argparse import sys from pathlib import Path from phm_vibench_manifest import DATASET_TO_FILE, FILE_SIZES REQUIRED_COLUMNS = ["Id", "Name", "File", "Label", "Sample_rate", "Sample_lenth", "Channel"] def import_pandas(): try: import pandas as pd except ImportError as exc: raise SystemExit("Missing dependency: pandas/openpyxl. Install with `pip install -r requirements.txt`.") from exc return pd def import_h5py(): try: import h5py except ImportError as exc: raise SystemExit("Missing dependency: h5py. Install with `pip install -r requirements.txt`.") from exc return h5py def load_metadata(root: Path): path = root / "metadata.xlsx" if not path.is_file(): raise SystemExit(f"Missing metadata.xlsx under {root}") pd = import_pandas() df = pd.read_excel(path) missing = [column for column in REQUIRED_COLUMNS if column not in df.columns] if missing: raise SystemExit("metadata.xlsx missing required columns: " + ", ".join(missing)) return df def print_dataset_summary(df) -> None: counts = df["Name"].value_counts().sort_index() print("datasets:", len(counts)) for dataset, count in counts.items(): file_name = DATASET_TO_FILE.get(dataset, "") print(f"{dataset:<18} samples={count:<6} file={file_name}") def normalize_dataset_id(dataset: str) -> str: lookup = {name.lower(): name for name in DATASET_TO_FILE} normalized = lookup.get(dataset.lower()) if normalized is None: raise SystemExit(f"Unknown dataset {dataset}. Use --list-datasets to inspect valid dataset ids.") return normalized def choose_smoke_dataset(root: Path) -> str: present = [] for dataset, h5_name in DATASET_TO_FILE.items(): if (root / h5_name).is_file(): present.append((FILE_SIZES[h5_name], dataset)) if not present: raise SystemExit(f"No published H5 file found under {root}; download --preset demo or choose --metadata-only") present.sort() return present[0][1] def select_sample(df, dataset: str, sample_index: int, sample_id: str | None): rows = df[df["Name"].eq(dataset)].reset_index(drop=True) if rows.empty: raise SystemExit(f"Dataset {dataset} not found in metadata.xlsx") if sample_id is not None: matches = rows[rows["Id"].astype(str).eq(sample_id)] if matches.empty: raise SystemExit(f"Sample id {sample_id} not found in dataset {dataset}") return matches.iloc[0], len(rows) if sample_index < 0 or sample_index >= len(rows): raise SystemExit(f"--sample-index must be in [0, {len(rows) - 1}] for {dataset}") return rows.iloc[sample_index], len(rows) def inspect_sample(root: Path, dataset: str, sample_index: int, sample_id: str | None, *, metadata_only: bool) -> None: df = load_metadata(root) row, dataset_rows = select_sample(df, dataset, sample_index, sample_id) sample_key = str(int(row["Id"])) h5_name = DATASET_TO_FILE.get(dataset) if h5_name is None: raise SystemExit(f"Dataset {dataset} is not in the published H5 manifest") print(f"root={root}") print(f"dataset={dataset} samples={dataset_rows} h5={h5_name}") print( "sample " f"id={sample_key} label={row['Label']} sample_rate={row['Sample_rate']} " f"sample_lenth={row['Sample_lenth']} channel={row['Channel']}" ) if metadata_only: return h5_path = root / h5_name if not h5_path.is_file(): raise SystemExit(f"Missing {h5_name} under {root}") h5py = import_h5py() with h5py.File(h5_path, "r") as h5: if sample_key not in h5: raise SystemExit(f"Sample id {sample_key} not found in {h5_name}") dataset_obj = h5[sample_key] print(f"h5 key={sample_key} shape={dataset_obj.shape} dtype={dataset_obj.dtype}") def parse_args() -> argparse.Namespace: parser = argparse.ArgumentParser(description=__doc__) parser.add_argument("--root", type=Path, default=Path("PHM-Vibench"), help="Downloaded dataset root") parser.add_argument("--dataset", default="RM_007_MFPT", help="Dataset id such as RM_007_MFPT; case-insensitive") parser.add_argument("--sample-index", type=int, default=0, help="Zero-based sample index within --dataset") parser.add_argument("--sample-id", help="Explicit sample Id from metadata.xlsx; overrides --sample-index") parser.add_argument("--metadata-only", action="store_true", help="Inspect metadata without opening the H5 file") parser.add_argument("--list-datasets", action="store_true", help="List dataset sample counts from metadata.xlsx") parser.add_argument("--smoke", action="store_true", help="Inspect the smallest published H5 file present under --root") return parser.parse_args() def main() -> int: args = parse_args() if args.list_datasets: print_dataset_summary(load_metadata(args.root)) return 0 dataset = choose_smoke_dataset(args.root) if args.smoke else normalize_dataset_id(args.dataset) inspect_sample( args.root, dataset, args.sample_index, args.sample_id, metadata_only=args.metadata_only, ) return 0 if __name__ == "__main__": sys.exit(main())