setup

"""
 Copyright (c) 2022, salesforce.com, inc.
 All rights reserved.
 SPDX-License-Identifier: BSD-3-Clause
 For full license text, see the LICENSE file in the repo root or https://opensource.org/licenses/BSD-3-Clause
"""

from setuptools import setup, find_namespace_packages
import platform

DEPENDENCY_LINKS = []
if platform.system() == "Windows":
    DEPENDENCY_LINKS.append("https://download.pytorch.org/whl/torch_stable.html")

def fetch_requirements(filename):
    with open(filename) as f:
        return [ln.strip() for ln in f.read().split("\n")]

setup(
    name="salesforce-lavis",
    version="1.0.0.dev1",
    author="Dongxu Li, Junnan Li, Hung Le, Guangsen Wang, Silvio Savarese, Steven C.H. Hoi",
    description="LAVIS - A One-stop Library for Language-Vision Intelligence",
    long_description=open("README.md", "r", encoding="utf-8").read(),
    long_description_content_type="text/markdown",
    keywords="Vision-Language, Multimodal, Image Captioning, Generative AI, Deep Learning, Library, PyTorch",
    license="3-Clause BSD",
    packages=find_namespace_packages(include="lavis.*"),
    install_requires=fetch_requirements("requirements.txt"),
    python_requires=">=3.7.0",
    include_package_data=True,
    dependency_links=DEPENDENCY_LINKS,
    zip_safe=False,
)


train

"""
 Copyright (c) 2022, salesforce.com, inc.
 All rights reserved.
 SPDX-License-Identifier: BSD-3-Clause
 For full license text, see the LICENSE file in the repo root or https://opensource.org/licenses/BSD-3-Clause
"""

import argparse
import os
import random

import numpy as np
import torch
import torch.backends.cudnn as cudnn

import lavis.tasks as tasks
from lavis.common.config import Config
from lavis.common.dist_utils import get_rank, init_distributed_mode
from lavis.common.logger import setup_logger
from lavis.common.optims import (
    LinearWarmupCosineLRScheduler,
    LinearWarmupStepLRScheduler,
)
from lavis.common.registry import registry
from lavis.common.utils import now

# imports modules for registration
from lavis.datasets.builders import *
from lavis.models import *
from lavis.processors import *
from lavis.runners import *
from lavis.tasks import *

def parse_args():
    parser = argparse.ArgumentParser(description="Training")

    parser.add_argument("--cfg-path", required=True, help="path to configuration file.")
    parser.add_argument(
        "--options",
        nargs="+",
        help="override some settings in the used config, the key-value pair "
        "in xxx=yyy format will be merged into config file (deprecate), "
        "change to --cfg-options instead.",
    )

    args = parser.parse_args()
    # if 'LOCAL_RANK' not in os.environ:
    #     os.environ['LOCAL_RANK'] = str(args.local_rank)

    return args

def setup_seeds(config):
    seed = config.run_cfg.seed + get_rank()

    random.seed(seed)
    np.random.seed(seed)
    torch.manual_seed(seed)

    cudnn.benchmark = False
    cudnn.deterministic = True

def get_runner_class(cfg):
    """
    Get runner class from config. Default to epoch-based runner.
    """
    runner_cls = registry.get_runner_class(cfg.run_cfg.get("runner", "runner_base"))

    return runner_cls

def main():
    # allow auto-dl completes on main process without timeout when using NCCL backend.
    # os.environ["NCCL_BLOCKING_WAIT"] = "1"

    # set before init_distributed_mode() to ensure the same job_id shared across all ranks.
    job_id = now()

    cfg = Config(parse_args())

    init_distributed_mode(cfg.run_cfg)

    setup_seeds(cfg)

    # set after init_distributed_mode() to only log on master.
    setup_logger()

    cfg.pretty_print()

    task = tasks.setup_task(cfg)
    datasets = task.build_datasets(cfg)
    model = task.build_model(cfg)

    runner = get_runner_class(cfg)(
        cfg=cfg, job_id=job_id, task=task, model=model, datasets=datasets
    )
    runner.train()

if __name__ == "__main__":
    main()


import lavis.tasks as tasks
from lavis.common.config import Config
from lavis.common.dist_utils import get_rank, init_distributed_mode
from lavis.common.logger import setup_logger
from lavis.common.optims import (
    LinearWarmupCosineLRScheduler,
    LinearWarmupStepLRScheduler,
)
from lavis.common.registry import registry
from lavis.common.utils import now

# imports modules for registration
from lavis.datasets.builders import *
from lavis.models import *
from lavis.processors import *
from lavis.runners import *
from lavis.tasks import *

def parse_args():
    parser = argparse.ArgumentParser(description="Training")

    parser.add_argument("--cfg-path", required=True, help="path to configuration file.")
    parser.add_argument(
        "--options",
        nargs="+",
        help="override some settings in the used config, the key-value pair "
        "in xxx=yyy format will be merged into config file (deprecate), "
        "change to --cfg-options instead.",
    )

    args = parser.parse_args()
    # if 'LOCAL_RANK' not in os.environ:
    #     os.environ['LOCAL_RANK'] = str(args.local_rank)

    return args

def setup_seeds(config):
    seed = config.run_cfg.seed + get_rank()

    random.seed(seed)
    np.random.seed(seed)
    torch.manual_seed(seed)

    cudnn.benchmark = False
    cudnn.deterministic = True

def get_runner_class(cfg):
    """
    Get runner class from config. Default to epoch-based runner.
    """
    runner_cls = registry.get_runner_class(cfg.run_cfg.get("runner", "runner_base"))

    return runner_cls


def parse_args():
    parser = argparse.ArgumentParser(description="Training")

    parser.add_argument("--cfg-path", required=True, help="path to configuration file.")
    parser.add_argument(
        "--options",
        nargs="+",
        help="override some settings in the used config, the key-value pair "
        "in xxx=yyy format will be merged into config file (deprecate), "
        "change to --cfg-options instead.",
    )

    args = parser.parse_args()
    # if 'LOCAL_RANK' not in os.environ:
    #     os.environ['LOCAL_RANK'] = str(args.local_rank)

    return args

def setup_seeds(config):
    seed = config.run_cfg.seed + get_rank()

    random.seed(seed)
    np.random.seed(seed)
    torch.manual_seed(seed)

    cudnn.benchmark = False
    cudnn.deterministic = True

def get_runner_class(cfg):
    """
    Get runner class from config. Default to epoch-based runner.
    """
    runner_cls = registry.get_runner_class(cfg.run_cfg.get("runner", "runner_base"))

    return runner_cls

def main():
    # allow auto-dl completes on main process without timeout when using NCCL backend.
    # os.environ["NCCL_BLOCKING_WAIT"] = "1"

    # set before init_distributed_mode() to ensure the same job_id shared across all ranks.
    job_id = now()

    cfg = Config(parse_args())


    )

    args = parser.parse_args()
    # if 'LOCAL_RANK' not in os.environ:
    #     os.environ['LOCAL_RANK'] = str(args.local_rank)

    return args

def setup_seeds(config):
    seed = config.run_cfg.seed + get_rank()

    random.seed(seed)
    np.random.seed(seed)
    torch.manual_seed(seed)

    cudnn.benchmark = False
    cudnn.deterministic = True

def get_runner_class(cfg):
    """
    Get runner class from config. Default to epoch-based runner.
    """
    runner_cls = registry.get_runner_class(cfg.run_cfg.get("runner", "runner_base"))

    return runner_cls

def main():
    # allow auto-dl completes on main process without timeout when using NCCL backend.
    # os.environ["NCCL_BLOCKING_WAIT"] = "1"

    # set before init_distributed_mode() to ensure the same job_id shared across all ranks.
    job_id = now()

    cfg = Config(parse_args())

    init_distributed_mode(cfg.run_cfg)

    setup_seeds(cfg)

    # set after init_distributed_mode() to only log on master.
    setup_logger()

    cfg.pretty_print()


main

def setup_seeds(config):
    seed = config.run_cfg.seed + get_rank()

    random.seed(seed)
    np.random.seed(seed)
    torch.manual_seed(seed)

    cudnn.benchmark = False
    cudnn.deterministic = True

def get_runner_class(cfg):
    """
    Get runner class from config. Default to epoch-based runner.
    """
    runner_cls = registry.get_runner_class(cfg.run_cfg.get("runner", "runner_base"))

    return runner_cls

def main():
    # allow auto-dl completes on main process without timeout when using NCCL backend.
    # os.environ["NCCL_BLOCKING_WAIT"] = "1"

    # set before init_distributed_mode() to ensure the same job_id shared across all ranks.
    job_id = now()

    cfg = Config(parse_args())

    init_distributed_mode(cfg.run_cfg)

    setup_seeds(cfg)

    # set after init_distributed_mode() to only log on master.
    setup_logger()

    cfg.pretty_print()

    task = tasks.setup_task(cfg)
    datasets = task.build_datasets(cfg)
    model = task.build_model(cfg)

    runner = get_runner_class(cfg)(
        cfg=cfg, job_id=job_id, task=task, model=model, datasets=datasets
    )
    runner.train()

if __name__ == "__main__":
    main()


evaluate

"""
 Copyright (c) 2022, salesforce.com, inc.
 All rights reserved.
 SPDX-License-Identifier: BSD-3-Clause
 For full license text, see the LICENSE file in the repo root or https://opensource.org/licenses/BSD-3-Clause
"""

import argparse
import random

import numpy as np
import torch
import torch.backends.cudnn as cudnn

import lavis.tasks as tasks
from lavis.common.config import Config
from lavis.common.dist_utils import get_rank, init_distributed_mode
from lavis.common.logger import setup_logger
from lavis.common.optims import (
    LinearWarmupCosineLRScheduler,
    LinearWarmupStepLRScheduler,
)
from lavis.common.utils import now

# imports modules for registration
from lavis.datasets.builders import *
from lavis.models import *
from lavis.processors import *
from lavis.runners.runner_base import RunnerBase
from lavis.tasks import *

def parse_args():
    parser = argparse.ArgumentParser(description="Training")

    parser.add_argument("--cfg-path", required=True, help="path to configuration file.")
    parser.add_argument(
        "--options",
        nargs="+",
        help="override some settings in the used config, the key-value pair "
        "in xxx=yyy format will be merged into config file (deprecate), "
        "change to --cfg-options instead.",
    )

    args = parser.parse_args()
    # if 'LOCAL_RANK' not in os.environ:
    #     os.environ['LOCAL_RANK'] = str(args.local_rank)

    return args

def setup_seeds(config):
    seed = config.run_cfg.seed + get_rank()

    random.seed(seed)
    np.random.seed(seed)
    torch.manual_seed(seed)

    cudnn.benchmark = False
    cudnn.deterministic = True

def main():
    # allow auto-dl completes on main process without timeout when using NCCL backend.
    # os.environ["NCCL_BLOCKING_WAIT"] = "1"

    # set before init_distributed_mode() to ensure the same job_id shared across all ranks.
    job_id = now()

    cfg = Config(parse_args())

    init_distributed_mode(cfg.run_cfg)

    setup_seeds(cfg)

    # set after init_distributed_mode() to only log on master.
    setup_logger()

    cfg.pretty_print()

    task = tasks.setup_task(cfg)
    datasets = task.build_datasets(cfg)
    model = task.build_model(cfg)

    runner = RunnerBase(
        cfg=cfg, job_id=job_id, task=task, model=model, datasets=datasets
    )
    runner.evaluate(skip_reload=True)

if __name__ == "__main__":
    main()


import torch.backends.cudnn as cudnn

import lavis.tasks as tasks
from lavis.common.config import Config
from lavis.common.dist_utils import get_rank, init_distributed_mode
from lavis.common.logger import setup_logger
from lavis.common.optims import (
    LinearWarmupCosineLRScheduler,
    LinearWarmupStepLRScheduler,
)
from lavis.common.utils import now

# imports modules for registration
from lavis.datasets.builders import *
from lavis.models import *
from lavis.processors import *
from lavis.runners.runner_base import RunnerBase
from lavis.tasks import *

def parse_args():
    parser = argparse.ArgumentParser(description="Training")

    parser.add_argument("--cfg-path", required=True, help="path to configuration file.")
    parser.add_argument(
        "--options",
        nargs="+",
        help="override some settings in the used config, the key-value pair "
        "in xxx=yyy format will be merged into config file (deprecate), "
        "change to --cfg-options instead.",
    )

    args = parser.parse_args()
    # if 'LOCAL_RANK' not in os.environ:
    #     os.environ['LOCAL_RANK'] = str(args.local_rank)

    return args

def setup_seeds(config):
    seed = config.run_cfg.seed + get_rank()

    random.seed(seed)
    np.random.seed(seed)
    torch.manual_seed(seed)

    cudnn.benchmark = False
    cudnn.deterministic = True

def main():
    # allow auto-dl completes on main process without timeout when using NCCL backend.
    # os.environ["NCCL_BLOCKING_WAIT"] = "1"

    # set before init_distributed_mode() to ensure the same job_id shared across all ranks.
    job_id = now()


def parse_args():
    parser = argparse.ArgumentParser(description="Training")

    parser.add_argument("--cfg-path", required=True, help="path to configuration file.")
    parser.add_argument(
        "--options",
        nargs="+",
        help="override some settings in the used config, the key-value pair "
        "in xxx=yyy format will be merged into config file (deprecate), "
        "change to --cfg-options instead.",
    )

    args = parser.parse_args()
    # if 'LOCAL_RANK' not in os.environ:
    #     os.environ['LOCAL_RANK'] = str(args.local_rank)

    return args

def setup_seeds(config):
    seed = config.run_cfg.seed + get_rank()

    random.seed(seed)
    np.random.seed(seed)
    torch.manual_seed(seed)

    cudnn.benchmark = False
    cudnn.deterministic = True

def main():
    # allow auto-dl completes on main process without timeout when using NCCL backend.
    # os.environ["NCCL_BLOCKING_WAIT"] = "1"

    # set before init_distributed_mode() to ensure the same job_id shared across all ranks.
    job_id = now()

    cfg = Config(parse_args())

    init_distributed_mode(cfg.run_cfg)

    setup_seeds(cfg)

    # set after init_distributed_mode() to only log on master.
    setup_logger()

    cfg.pretty_print()


main

    )

    args = parser.parse_args()
    # if 'LOCAL_RANK' not in os.environ:
    #     os.environ['LOCAL_RANK'] = str(args.local_rank)

    return args

def setup_seeds(config):
    seed = config.run_cfg.seed + get_rank()

    random.seed(seed)
    np.random.seed(seed)
    torch.manual_seed(seed)

    cudnn.benchmark = False
    cudnn.deterministic = True

def main():
    # allow auto-dl completes on main process without timeout when using NCCL backend.
    # os.environ["NCCL_BLOCKING_WAIT"] = "1"

    # set before init_distributed_mode() to ensure the same job_id shared across all ranks.
    job_id = now()

    cfg = Config(parse_args())

    init_distributed_mode(cfg.run_cfg)

    setup_seeds(cfg)

    # set after init_distributed_mode() to only log on master.
    setup_logger()

    cfg.pretty_print()

    task = tasks.setup_task(cfg)
    datasets = task.build_datasets(cfg)
    model = task.build_model(cfg)

    runner = RunnerBase(
        cfg=cfg, job_id=job_id, task=task, model=model, datasets=datasets
    )
    runner.evaluate(skip_reload=True)

if __name__ == "__main__":
    main()


docs.conf

# Configuration file for the Sphinx documentation builder.
#
# This file only contains a selection of the most common options. For a full
# list see the documentation:
# https://www.sphinx-doc.org/en/master/usage/configuration.html

# -- Path setup --------------------------------------------------------------

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#
# import os
# import sys
# sys.path.insert(0, os.path.abspath('.'))

# -- Project information -----------------------------------------------------

project = "LAVIS"
copyright = "2022, salesforce.com inc."
author = (
    "Dongxu Li, Junnan Li, Hung Le, Guangsen Wang, Silvio Savarese, Steven C.H. Hoi"
)

# -- General configuration ---------------------------------------------------

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = ["nbsphinx"]

# Add any paths that contain templates here, relative to this directory.
templates_path = ["_templates"]

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This pattern also affects html_static_path and html_extra_path.
exclude_patterns = []

# -- Options for HTML output -------------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
#
# html_theme = "alabaster"
html_theme = "sphinx_rtd_theme"

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ["_static"]

# pygments_style = "sphinx"


lavis.models.vit

"""
 Copyright (c) 2022, salesforce.com, inc.
 All rights reserved.
 SPDX-License-Identifier: BSD-3-Clause
 For full license text, see the LICENSE file in the repo root or https://opensource.org/licenses/BSD-3-Clause

 Based on timm code base
 https://github.com/rwightman/pytorch-image-models/tree/master/timm
"""

import math
import torch
import torch.nn as nn
import torch.nn.functional as F
from functools import partial

from timm.models.vision_transformer import _cfg, PatchEmbed
from timm.models.registry import register_model
from timm.models.layers import trunc_normal_, DropPath
from timm.models.helpers import named_apply, adapt_input_conv

from fairscale.nn.checkpoint.checkpoint_activations import checkpoint_wrapper
from lavis.models.base_model import BaseEncoder

class Mlp(nn.Module):
    """MLP as used in Vision Transformer, MLP-Mixer and related networks"""

    def __init__(
        self,
        in_features,
        hidden_features=None,
        out_features=None,
        act_layer=nn.GELU,
        drop=0.0,
    ):
        super().__init__()
        out_features = out_features or in_features
        hidden_features = hidden_features or in_features
        self.fc1 = nn.Linear(in_features, hidden_features)
        self.act = act_layer()
        self.fc2 = nn.Linear(hidden_features, out_features)
        self.drop = nn.Dropout(drop)

    def forward(self, x):
        x = self.fc1(x)
        x = self.act(x)
        x = self.drop(x)
        x = self.fc2(x)
        x = self.drop(x)
        return x

class Attention(nn.Module):
    def __init__(
        self,
        dim,
        num_heads=8,
        qkv_bias=False,
        qk_scale=None,
        attn_drop=0.0,
        proj_drop=0.0,
    ):
        super().__init__()
        self.num_heads = num_heads
        head_dim = dim // num_heads
        # NOTE scale factor was wrong in my original version, can set manually to be compat with prev weights
        self.scale = qk_scale or head_dim**-0.5
        self.qkv = nn.Linear(dim, dim * 3, bias=qkv_bias)
        self.attn_drop = nn.Dropout(attn_drop)
        self.proj = nn.Linear(dim, dim)
        self.proj_drop = nn.Dropout(proj_drop)
        self.attn_gradients = None
        self.attention_map = None

    def save_attn_gradients(self, attn_gradients):
        self.attn_gradients = attn_gradients

    def get_attn_gradients(self):
        return self.attn_gradients

    def save_attention_map(self, attention_map):
        self.attention_map = attention_map

    def get_attention_map(self):
        return self.attention_map

    def forward(self, x, register_hook=False):
        B, N, C = x.shape
        qkv = (
            self.qkv(x)
            .reshape(B, N, 3, self.num_heads, C // self.num_heads)
            .permute(2, 0, 3, 1, 4)
        )
        q, k, v = (
            qkv[0],
            qkv[1],
            qkv[2],
        )  # make torchscript happy (cannot use tensor as tuple)

        attn = (q @ k.transpose(-2, -1)) * self.scale
        attn = attn.softmax(dim=-1)
        attn = self.attn_drop(attn)

        if register_hook:
            self.save_attention_map(attn)
            attn.register_hook(self.save_attn_gradients)

        x = (attn @ v).transpose(1, 2).reshape(B, N, C)
        x = self.proj(x)
        x = self.proj_drop(x)
        return x

class Block(nn.Module):
    def __init__(
        self,
        dim,
        num_heads,
        mlp_ratio=4.0,
        qkv_bias=False,
        qk_scale=None,
        drop=0.0,
        attn_drop=0.0,
        drop_path=0.0,
        act_layer=nn.GELU,
        norm_layer=nn.LayerNorm,
        use_grad_checkpointing=False,
    ):
        super().__init__()
        self.norm1 = norm_layer(dim)
        self.attn = Attention(
            dim,
            num_heads=num_heads,
            qkv_bias=qkv_bias,
            qk_scale=qk_scale,
            attn_drop=attn_drop,
            proj_drop=drop,
        )
        # NOTE: drop path for stochastic depth, we shall see if this is better than dropout here
        self.drop_path = DropPath(drop_path) if drop_path > 0.0 else nn.Identity()
        self.norm2 = norm_layer(dim)
        mlp_hidden_dim = int(dim * mlp_ratio)
        self.mlp = Mlp(
            in_features=dim,
            hidden_features=mlp_hidden_dim,
            act_layer=act_layer,
            drop=drop,
        )

        if use_grad_checkpointing:
            self.attn = checkpoint_wrapper(self.attn)
            self.mlp = checkpoint_wrapper(self.mlp)

    def forward(self, x, register_hook=False):
        x = x + self.drop_path(self.attn(self.norm1(x), register_hook=register_hook))
        x = x + self.drop_path(self.mlp(self.norm2(x)))
        return x

class VisionTransformer(nn.Module):
    """Vision Transformer
    A PyTorch impl of : `An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale`  -
        https://arxiv.org/abs/2010.11929
    """

    def __init__(
        self,
        img_size=224,
        patch_size=16,
        in_chans=3,
        num_classes=1000,
        embed_dim=768,
        depth=12,
        num_heads=12,
        mlp_ratio=4.0,
        qkv_bias=True,
        qk_scale=None,
        representation_size=None,
        drop_rate=0.0,
        attn_drop_rate=0.0,
        drop_path_rate=0.0,
        norm_layer=None,
        use_grad_checkpointing=False,
        ckpt_layer=0,
    ):
        """
        Args:
            img_size (int, tuple): input image size
            patch_size (int, tuple): patch size
            in_chans (int): number of input channels
            num_classes (int): number of classes for classification head
            embed_dim (int): embedding dimension
            depth (int): depth of transformer
            num_heads (int): number of attention heads
            mlp_ratio (int): ratio of mlp hidden dim to embedding dim
            qkv_bias (bool): enable bias for qkv if True
            qk_scale (float): override default qk scale of head_dim ** -0.5 if set
            representation_size (Optional[int]): enable and set representation layer (pre-logits) to this value if set
            drop_rate (float): dropout rate
            attn_drop_rate (float): attention dropout rate
            drop_path_rate (float): stochastic depth rate
            norm_layer: (nn.Module): normalization layer
        """
        super().__init__()
        self.num_features = (
            self.embed_dim
        ) = embed_dim  # num_features for consistency with other models
        norm_layer = norm_layer or partial(nn.LayerNorm, eps=1e-6)

        self.patch_embed = PatchEmbed(
            img_size=img_size,
            patch_size=patch_size,
            in_chans=in_chans,
            embed_dim=embed_dim,
        )

        num_patches = self.patch_embed.num_patches

        self.cls_token = nn.Parameter(torch.zeros(1, 1, embed_dim))
        self.pos_embed = nn.Parameter(torch.zeros(1, num_patches + 1, embed_dim))
        self.pos_drop = nn.Dropout(p=drop_rate)

        dpr = [
            x.item() for x in torch.linspace(0, drop_path_rate, depth)
        ]  # stochastic depth decay rule
        self.blocks = nn.ModuleList(
            [
                Block(
                    dim=embed_dim,
                    num_heads=num_heads,
                    mlp_ratio=mlp_ratio,
                    qkv_bias=qkv_bias,
                    qk_scale=qk_scale,
                    drop=drop_rate,
                    attn_drop=attn_drop_rate,
                    drop_path=dpr[i],
                    norm_layer=norm_layer,
                    use_grad_checkpointing=(
                        use_grad_checkpointing and i >= depth - ckpt_layer
                    ),
                )
                for i in range(depth)
            ]
        )
        self.norm = norm_layer(embed_dim)

        trunc_normal_(self.pos_embed, std=0.02)
        trunc_normal_(self.cls_token, std=0.02)
        self.apply(self._init_weights)

    def _init_weights(self, m):
        if isinstance(m, nn.Linear):
            trunc_normal_(m.weight, std=0.02)
            if isinstance(m, nn.Linear) and m.bias is not None:
                nn.init.constant_(m.bias, 0)
        elif isinstance(m, nn.LayerNorm):
            nn.init.constant_(m.bias, 0)
            nn.init.constant_(m.weight, 1.0)

    @torch.jit.ignore
    def no_weight_decay(self):
        return {"pos_embed", "cls_token"}

    def forward(self, x, register_blk=-1):
        B = x.shape[0]
        x = self.patch_embed(x)

        cls_tokens = self.cls_token.expand(
            B, -1, -1
        )  # stole cls_tokens impl from Phil Wang, thanks
        x = torch.cat((cls_tokens, x), dim=1)

        x = x + self.pos_embed[:, : x.size(1), :]
        x = self.pos_drop(x)

        for i, blk in enumerate(self.blocks):
            x = blk(x, register_blk == i)
        x = self.norm(x)

        return x

    @torch.jit.ignore()
    def load_pretrained(self, checkpoint_path, prefix=""):
        _load_weights(self, checkpoint_path, prefix)

@torch.no_grad()
def _load_weights(model: VisionTransformer, checkpoint_path: str, prefix: str = ""):
    """Load weights from .npz checkpoints for official Google Brain Flax implementation"""
    import numpy as np

    def _n2p(w, t=True):
        if w.ndim == 4 and w.shape[0] == w.shape[1] == w.shape[2] == 1:
            w = w.flatten()
        if t:
            if w.ndim == 4:
                w = w.transpose([3, 2, 0, 1])
            elif w.ndim == 3:
                w = w.transpose([2, 0, 1])
            elif w.ndim == 2:
                w = w.transpose([1, 0])
        return torch.from_numpy(w)

    w = np.load(checkpoint_path)
    if not prefix and "opt/target/embedding/kernel" in w:
        prefix = "opt/target/"

    if hasattr(model.patch_embed, "backbone"):
        # hybrid
        backbone = model.patch_embed.backbone
        stem_only = not hasattr(backbone, "stem")
        stem = backbone if stem_only else backbone.stem
        stem.conv.weight.copy_(
            adapt_input_conv(
                stem.conv.weight.shape[1], _n2p(w[f"{prefix}conv_root/kernel"])
            )
        )
        stem.norm.weight.copy_(_n2p(w[f"{prefix}gn_root/scale"]))
        stem.norm.bias.copy_(_n2p(w[f"{prefix}gn_root/bias"]))
        if not stem_only:
            for i, stage in enumerate(backbone.stages):
                for j, block in enumerate(stage.blocks):
                    bp = f"{prefix}block{i + 1}/unit{j + 1}/"
                    for r in range(3):
                        getattr(block, f"conv{r + 1}").weight.copy_(
                            _n2p(w[f"{bp}conv{r + 1}/kernel"])
                        )
                        getattr(block, f"norm{r + 1}").weight.copy_(
                            _n2p(w[f"{bp}gn{r + 1}/scale"])
                        )
                        getattr(block, f"norm{r + 1}").bias.copy_(
                            _n2p(w[f"{bp}gn{r + 1}/bias"])
                        )
                    if block.downsample is not None:
                        block.downsample.conv.weight.copy_(
                            _n2p(w[f"{bp}conv_proj/kernel"])
                        )
                        block.downsample.norm.weight.copy_(
                            _n2p(w[f"{bp}gn_proj/scale"])
                        )
                        block.downsample.norm.bias.copy_(_n2p(w[f"{bp}gn_proj/bias"]))
        embed_conv_w = _n2p(w[f"{prefix}embedding/kernel"])
    else:
        embed_conv_w = adapt_input_conv(
            model.patch_embed.proj.weight.shape[1], _n2p(w[f"{prefix}embedding/kernel"])
        )
    model.patch_embed.proj.weight.copy_(embed_conv_w)
    model.patch_embed.proj.bias.copy_(_n2p(w[f"{prefix}embedding/bias"]))
    model.cls_token.copy_(_n2p(w[f"{prefix}cls"], t=False))
    pos_embed_w = _n2p(w[f"{prefix}Transformer/posembed_input/pos_embedding"], t=False)
    if pos_embed_w.shape != model.pos_embed.shape:
        pos_embed_w = resize_pos_embed(  # resize pos embedding when different size from pretrained weights
            pos_embed_w,
            model.pos_embed,
            getattr(model, "num_tokens", 1),
            model.patch_embed.grid_size,
        )
    model.pos_embed.copy_(pos_embed_w)
    model.norm.weight.copy_(_n2p(w[f"{prefix}Transformer/encoder_norm/scale"]))
    model.norm.bias.copy_(_n2p(w[f"{prefix}Transformer/encoder_norm/bias"]))
    #     if isinstance(model.head, nn.Linear) and model.head.bias.shape[0] == w[f'{prefix}head/bias'].shape[-1]:
    #         model.head.weight.copy_(_n2p(w[f'{prefix}head/kernel']))
    #         model.head.bias.copy_(_n2p(w[f'{prefix}head/bias']))
    #     if isinstance(getattr(model.pre_logits, 'fc', None), nn.Linear) and f'{prefix}pre_logits/bias' in w:
    #         model.pre_logits.fc.weight.copy_(_n2p(w[f'{prefix}pre_logits/kernel']))
    #         model.pre_logits.fc.bias.copy_(_n2p(w[f'{prefix}pre_logits/bias']))
    for i, block in enumerate(model.blocks.children()):
        block_prefix = f"{prefix}Transformer/encoderblock_{i}/"
        mha_prefix = block_prefix + "MultiHeadDotProductAttention_1/"
        block.norm1.weight.copy_(_n2p(w[f"{block_prefix}LayerNorm_0/scale"]))
        block.norm1.bias.copy_(_n2p(w[f"{block_prefix}LayerNorm_0/bias"]))
        block.attn.qkv.weight.copy_(
            torch.cat(
                [
                    _n2p(w[f"{mha_prefix}{n}/kernel"], t=False).flatten(1).T
                    for n in ("query", "key", "value")
                ]
            )
        )
        block.attn.qkv.bias.copy_(
            torch.cat(
                [
                    _n2p(w[f"{mha_prefix}{n}/bias"], t=False).reshape(-1)
                    for n in ("query", "key", "value")
                ]
            )
        )
        block.attn.proj.weight.copy_(_n2p(w[f"{mha_prefix}out/kernel"]).flatten(1))
        block.attn.proj.bias.copy_(_n2p(w[f"{mha_prefix}out/bias"]))
        for r in range(2):
            getattr(block.mlp, f"fc{r + 1}").weight.copy_(
                _n2p(w[f"{block_prefix}MlpBlock_3/Dense_{r}/kernel"])
            )
            getattr(block.mlp, f"fc{r + 1}").bias.copy_(
                _n2p(w[f"{block_prefix}MlpBlock_3/Dense_{r}/bias"])
            )
        block.norm2.weight.copy_(_n2p(w[f"{block_prefix}LayerNorm_2/scale"]))
        block.norm2.bias.copy_(_n2p(w[f"{block_prefix}LayerNorm_2/bias"]))

def resize_pos_embed(posemb, posemb_new, num_tokens=1, gs_new=()):
    # Rescale the grid of position embeddings when loading from state_dict. Adapted from
    # https://github.com/google-research/vision_transformer/blob/00883dd691c63a6830751563748663526e811cee/vit_jax/checkpoint.py#L224
    print("Resized position embedding: %s to %s", posemb.shape, posemb_new.shape)
    ntok_new = posemb_new.shape[1]
    if num_tokens:
        posemb_tok, posemb_grid = posemb[:, :num_tokens], posemb[0, num_tokens:]
        ntok_new -= num_tokens
    else:
        posemb_tok, posemb_grid = posemb[:, :0], posemb[0]
    gs_old = int(math.sqrt(len(posemb_grid)))
    if not len(gs_new):  # backwards compatibility
        gs_new = [int(math.sqrt(ntok_new))] * 2
    assert len(gs_new) >= 2
    print("Position embedding grid-size from %s to %s", [gs_old, gs_old], gs_new)
    posemb_grid = posemb_grid.reshape(1, gs_old, gs_old, -1).permute(0, 3, 1, 2)
    posemb_grid = F.interpolate(
        posemb_grid, size=gs_new, mode="bicubic", align_corners=False
    )
    posemb_grid = posemb_grid.permute(0, 2, 3, 1).reshape(1, gs_new[0] * gs_new[1], -1)
    posemb = torch.cat([posemb_tok, posemb_grid], dim=1)
    return

def interpolate_pos_embed(pos_embed_checkpoint, visual_encoder):
    # interpolate position embedding
    embedding_size = pos_embed_checkpoint.shape[-1]
    num_patches = visual_encoder.patch_embed.num_patches
    num_extra_tokens = visual_encoder.pos_embed.shape[-2] - num_patches
    # height (== width) for the checkpoint position embedding
    orig_size = int((pos_embed_checkpoint.shape[-2] - num_extra_tokens) ** 0.5)
    # height (== width) for the new position embedding
    new_size = int(num_patches**0.5)

    if orig_size != new_size:
        # class_token and dist_token are kept unchanged
        extra_tokens = pos_embed_checkpoint[:, :num_extra_tokens]
        # only the position tokens are interpolated
        pos_tokens = pos_embed_checkpoint[:, num_extra_tokens:]
        pos_tokens = pos_tokens.reshape(
            -1, orig_size, orig_size, embedding_size
        ).permute(0, 3, 1, 2)
        pos_tokens = torch.nn.functional.interpolate(
            pos_tokens, size=(new_size, new_size), mode="bicubic", align_corners=False
        )
        pos_tokens = pos_tokens.permute(0, 2, 3, 1).flatten(1, 2)
        new_pos_embed = torch.cat((extra_tokens, pos_tokens), dim=1)
        print(
            "reshape position embedding from %d to %d" % (orig_size**2, new_size**2)
        )

        return new_pos_embed
    else:
        return pos_embed_checkpoint

class VisionTransformerEncoder(VisionTransformer, BaseEncoder):
    @classmethod
    def from_config(cls, cfg, from_pretrained=False):

        vit_type = cfg.get("vit_type", "base")
        image_size = cfg.get("image_size", 384)
        ckpt_layer = cfg.get("vit_ckpt_layer", 0)
        drop_path_rate = cfg.get("vit_drop_path_rate", 0)
        norm_layer_eps = cfg.get("vit_layer_norm_epsilon", -1)
        use_grad_checkpointing = cfg.get("vit_grad_ckpt", False)

        if norm_layer_eps == -1:
            norm_layer = None
        else:
            norm_layer = partial(nn.LayerNorm, eps=norm_layer_eps)

        #     norm_layer=partial(nn.LayerNorm, eps=1e-6),
        assert vit_type in ["base", "large"], "vit parameter must be base or large"
        if vit_type == "base":
            vision_width = 768
            visual_encoder = cls(
                img_size=image_size,
                patch_size=16,
                embed_dim=vision_width,
                depth=12,
                num_heads=12,
                use_grad_checkpointing=use_grad_checkpointing,
                ckpt_layer=ckpt_layer,
                drop_path_rate=0 or drop_path_rate,
                norm_layer=norm_layer,
            )

            if from_pretrained:
                checkpoint = torch.hub.load_state_dict_from_url(
                    url="https://dl.fbaipublicfiles.com/deit/deit_base_patch16_224-b5f2ef4d.pth",
                    map_location="cpu",
                    check_hash=True,
                )
                state_dict = checkpoint["model"]
                state_dict["pos_embed"] = interpolate_pos_embed(
                    state_dict["pos_embed"], visual_encoder
                )
                msg = visual_encoder.load_state_dict(state_dict, strict=False)

        elif vit_type == "large":
            vision_width = 1024
            visual_encoder = cls(
                img_size=image_size,
                patch_size=16,
                embed_dim=vision_width,
                depth=24,
                num_heads=16,
                use_grad_checkpointing=use_grad_checkpointing,
                ckpt_layer=ckpt_layer,
                drop_path_rate=0.1 or drop_path_rate,
                norm_layer=norm_layer,
            )
            if from_pretrained:
                from timm.models.helpers import load_custom_pretrained
                from timm.models.vision_transformer import default_cfgs

                load_custom_pretrained(
                    visual_encoder, default_cfgs["vit_large_patch16_224_in21k"]
                )

        visual_encoder.vision_width = vision_width
        return visual_encoder

    def forward_features(self, x, register_blk=-1):
        return super().forward(x, register_blk)


Mlp

 Based on timm code base
 https://github.com/rwightman/pytorch-image-models/tree/master/timm
"""

import math
import torch
import torch.nn as nn
import torch.nn.functional as F
from functools import partial

from timm.models.vision_transformer import _cfg, PatchEmbed
from timm.models.registry import register_model
from timm.models.layers import trunc_normal_, DropPath
from timm.models.helpers import named_apply, adapt_input_conv

from fairscale.nn.checkpoint.checkpoint_activations import checkpoint_wrapper
from lavis.models.base_model import BaseEncoder

class Mlp(nn.Module):
    """MLP as used in Vision Transformer, MLP-Mixer and related networks"""

    def __init__(
        self,
        in_features,
        hidden_features=None,
        out_features=None,
        act_layer=nn.GELU,
        drop=0.0,
    ):
        super().__init__()
        out_features = out_features or in_features
        hidden_features = hidden_features or in_features
        self.fc1 = nn.Linear(in_features, hidden_features)
        self.act = act_layer()
        self.fc2 = nn.Linear(hidden_features, out_features)
        self.drop = nn.Dropout(drop)

    def forward(self, x):
        x = self.fc1(x)
        x = self.act(x)
        x = self.drop(x)
        x = self.fc2(x)
        x = self.drop(x)
        return x

class Attention(nn.Module):
    def __init__(
        self,
        dim,
        num_heads=8,
        qkv_bias=False,
        qk_scale=None,
        attn_drop=0.0,
        proj_drop=0.0,
    ):
        super().__init__()
        self.num_heads = num_heads
        head_dim = dim // num_heads
        # NOTE scale factor was wrong in my original version, can set manually to be compat with prev weights
        self.scale = qk_scale or head_dim**-0.5
        self.qkv = nn.Linear(dim, dim * 3, bias=qkv_bias)
        self.attn_drop = nn.Dropout(attn_drop)
        self.proj = nn.Linear(dim, dim)


Attention

        act_layer=nn.GELU,
        drop=0.0,
    ):
        super().__init__()
        out_features = out_features or in_features
        hidden_features = hidden_features or in_features
        self.fc1 = nn.Linear(in_features, hidden_features)
        self.act = act_layer()
        self.fc2 = nn.Linear(hidden_features, out_features)
        self.drop = nn.Dropout(drop)

    def forward(self, x):
        x = self.fc1(x)
        x = self.act(x)
        x = self.drop(x)
        x = self.fc2(x)
        x = self.drop(x)
        return x

class Attention(nn.Module):
    def __init__(
        self,
        dim,
        num_heads=8,
        qkv_bias=False,
        qk_scale=None,
        attn_drop=0.0,
        proj_drop=0.0,
    ):
        super().__init__()
        self.num_heads = num_heads
        head_dim = dim // num_heads
        # NOTE scale factor was wrong in my original version, can set manually to be compat with prev weights
        self.scale = qk_scale or head_dim**-0.5
        self.qkv = nn.Linear(dim, dim * 3, bias=qkv_bias)
        self.attn_drop = nn.Dropout(attn_drop)
        self.proj = nn.Linear(dim, dim)
        self.proj_drop = nn.Dropout(proj_drop)
        self.attn_gradients = None
        self.attention_map = None

    def save_attn_gradients(self, attn_gradients):
        self.attn_gradients = attn_gradients

    def get_attn_gradients(self):
        return self.attn_gradients

    def save_attention_map(self, attention_map):
        self.attention_map = attention_map

    def get_attention_map(self):
        return self.attention_map

    def forward(self, x, register_hook=False):
        B, N, C = x.shape
        qkv = (
            self.qkv(x)
            .reshape(B, N, 3, self.num_heads, C // self.num_heads)
            .permute(2, 0, 3, 1, 4)
        )
        q, k, v = (
            qkv[0],
            qkv[1],
            qkv[2],
        )  # make torchscript happy (cannot use tensor as tuple)

        attn = (q @ k.transpose(-2, -1)) * self.scale
        attn = attn.softmax(dim=-1)
        attn = self.attn_drop(attn)

        if register_hook:
            self.save_attention_map(attn)
            attn.register_hook(self.save_attn_gradients)

        x = (attn @ v).transpose(1, 2).reshape(B, N, C)
        x = self.proj(x)
        x = self.proj_drop(x)
        return x

class Block(nn.Module):
    def __init__(
        self,
        dim,
        num_heads,
        mlp_ratio=4.0,
        qkv_bias=False,
        qk_scale=None,
        drop=0.0,
        attn_drop=0.0,
        drop_path=0.0,
        act_layer=nn.GELU,
        norm_layer=nn.LayerNorm,
        use_grad_checkpointing=False,
    ):
        super().__init__()
        self.norm1 = norm_layer(dim)
        self.attn = Attention(


Block

        q, k, v = (
            qkv[0],
            qkv[1],
            qkv[2],
        )  # make torchscript happy (cannot use tensor as tuple)

        attn = (q @ k.transpose(-2, -1)) * self.scale
        attn = attn.softmax(dim=-1)
        attn = self.attn_drop(attn)

        if register_hook:
            self.save_attention_map(attn)
            attn.register_hook(self.save_attn_gradients)

        x = (attn @ v).transpose(1, 2).reshape(B, N, C)
        x = self.proj(x)
        x = self.proj_drop(x)
        return x

class Block(nn.Module):
    def __init__(
        self,
        dim,
        num_heads,
        mlp_ratio=4.0,
        qkv_bias=False,
        qk_scale=None,
        drop=0.0,
        attn_drop=0.0,
        drop_path=0.0,
        act_layer=nn.GELU,
        norm_layer=nn.LayerNorm,
        use_grad_checkpointing=False,
    ):
        super().__init__()
        self.norm1 = norm_layer(dim)
        self.attn = Attention(
            dim,
            num_heads=num_heads,
            qkv_bias=qkv_bias,
            qk_scale=qk_scale,
            attn_drop=attn_drop,
            proj_drop=drop,
        )
        # NOTE: drop path for stochastic depth, we shall see if this is better than dropout here
        self.drop_path = DropPath(drop_path) if drop_path > 0.0 else nn.Identity()
        self.norm2 = norm_layer(dim)
        mlp_hidden_dim = int(dim * mlp_ratio)
        self.mlp = Mlp(
            in_features=dim,
            hidden_features=mlp_hidden_dim,
            act_layer=act_layer,
            drop=drop,
        )

        if use_grad_checkpointing:
            self.attn = checkpoint_wrapper(self.attn)
            self.mlp = checkpoint_wrapper(self.mlp)

    def forward(self, x, register_hook=False):
        x = x + self.drop_path(self.attn(self.norm1(x), register_hook=register_hook))
        x = x + self.drop_path(self.mlp(self.norm2(x)))
        return x

class VisionTransformer(nn.Module):
    """Vision Transformer
    A PyTorch impl of : `An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale`  -
        https://arxiv.org/abs/2010.11929
    """

    def __init__(
        self,
        img_size=224,
        patch_size=16,
        in_chans=3,
        num_classes=1000,
        embed_dim=768,
        depth=12,
        num_heads=12,
        mlp_ratio=4.0,
        qkv_bias=True,
        qk_scale=None,


VisionTransformer

        self.drop_path = DropPath(drop_path) if drop_path > 0.0 else nn.Identity()
        self.norm2 = norm_layer(dim)
        mlp_hidden_dim = int(dim * mlp_ratio)
        self.mlp = Mlp(
            in_features=dim,
            hidden_features=mlp_hidden_dim,
            act_layer=act_layer,
            drop=drop,
        )

        if use_grad_checkpointing:
            self.attn = checkpoint_wrapper(self.attn)
            self.mlp = checkpoint_wrapper(self.mlp)

    def forward(self, x, register_hook=False):
        x = x + self.drop_path(self.attn(self.norm1(x), register_hook=register_hook))
        x = x + self.drop_path(self.mlp(self.norm2(x)))
        return x

class VisionTransformer(nn.Module):
    """Vision Transformer
    A PyTorch impl of : `An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale`  -
        https://arxiv.org/abs/2010.11929
    """

    def __init__(
        self,
        img_size=224,
        patch_size=16,
        in_chans=3,
        num_classes=1000,
        embed_dim=768,
        depth=12,
        num_heads=12,
        mlp_ratio=4.0,
        qkv_bias=True,
        qk_scale=None,
        representation_size=None,
        drop_rate=0.0,
        attn_drop_rate=0.0,
        drop_path_rate=0.0,
        norm_layer=None,
        use_grad_checkpointing=False,
        ckpt_layer=0,
    ):
        """
        Args:
            img_size (int, tuple): input image size
            patch_size (int, tuple): patch size
            in_chans (int): number of input channels
            num_classes (int): number of classes for classification head
            embed_dim (int): embedding dimension
            depth (int): depth of transformer
            num_heads (int): number of attention heads
            mlp_ratio (int): ratio of mlp hidden dim to embedding dim
            qkv_bias (bool): enable bias for qkv if True
            qk_scale (float): override default qk scale of head_dim ** -0.5 if set
            representation_size (Optional[int]): enable and set representation layer (pre-logits) to this value if set
            drop_rate (float): dropout rate
            attn_drop_rate (float): attention dropout rate
            drop_path_rate (float): stochastic depth rate
            norm_layer: (nn.Module): normalization layer
        """
        super().__init__()
        self.num_features = (
            self.embed_dim
        ) = embed_dim  # num_features for consistency with other models
        norm_layer = norm_layer or partial(nn.LayerNorm, eps=1e-6)

        self.patch_embed = PatchEmbed(
            img_size=img_size,
            patch_size=patch_size,
            in_chans=in_chans,
            embed_dim=embed_dim,
        )

        num_patches = self.patch_embed.num_patches

        self.cls_token = nn.Parameter(torch.zeros(1, 1, embed_dim))
        self.pos_embed = nn.Parameter(torch.zeros(1, num_patches + 1, embed_dim))
        self.pos_drop = nn.Dropout(p=drop_rate)

        dpr = [
            x.item() for x in torch.linspace(0, drop_path_rate, depth)
        ]  # stochastic depth decay rule
        self.blocks = nn.ModuleList(
            [
                Block(
                    dim=embed_dim,
                    num_heads=num_heads,
                    mlp_ratio=mlp_ratio,
                    qkv_bias=qkv_bias,
                    qk_scale=qk_scale,
                    drop=drop_rate,
                    attn_drop=attn_drop_rate,
                    drop_path=dpr[i],
                    norm_layer=norm_layer,
                    use_grad_checkpointing=(
                        use_grad_checkpointing and i >= depth - ckpt_layer
                    ),
                )
                for i in range(depth)
            ]
        )
        self.norm = norm_layer(embed_dim)

        trunc_normal_(self.pos_embed, std=0.02)
        trunc_normal_(self.cls_token, std=0.02)
        self.apply(self._init_weights)

    def _init_weights(self, m):
        if isinstance(m, nn.Linear):
            trunc_normal_(m.weight, std=0.02)
            if isinstance(m, nn.Linear) and m.bias is not None:
                nn.init.constant_(m.bias, 0)
        elif isinstance(m, nn.LayerNorm):
            nn.init.constant_(m.bias, 0)
            nn.init.constant_(m.weight, 1.0)

    @torch.jit.ignore
    def no_weight_decay(self):
        return {"pos_embed", "cls_token"}

    def forward(self, x, register_blk=-1):
        B = x.shape[0]
        x = self.patch_embed(x)

        cls_tokens = self.cls_token.expand(
            B, -1, -1
        )  # stole cls_tokens impl from Phil Wang, thanks
        x = torch.cat((cls_tokens, x), dim=1)

        x = x + self.pos_embed[:, : x.size(1), :]
        x = self.pos_drop(x)

        for i, blk in enumerate(self.blocks):
            x = blk(x, register_blk == i)
        x = self.norm(x)

        return x

    @torch.jit.ignore()
    def load_pretrained(self, checkpoint_path, prefix=""):
        _load_weights(self, checkpoint_path, prefix)

@torch.no_grad()
def _load_weights(model: VisionTransformer, checkpoint_path: str, prefix: str = ""):
    """Load weights from .npz checkpoints for official Google Brain Flax implementation"""
    import numpy as np

    def _n2p(w, t=True):
        if w.ndim == 4 and w.shape[0] == w.shape[1] == w.shape[2] == 1:
            w = w.flatten()
        if t:
            if w.ndim == 4:
                w = w.transpose([3, 2, 0, 1])
            elif w.ndim == 3:
                w = w.transpose([2, 0, 1])
            elif w.ndim == 2:
                w = w.transpose([1, 0])
        return torch.from_numpy(w)

    w = np.load(checkpoint_path)


        cls_tokens = self.cls_token.expand(
            B, -1, -1
        )  # stole cls_tokens impl from Phil Wang, thanks
        x = torch.cat((cls_tokens, x), dim=1)

        x = x + self.pos_embed[:, : x.size(1), :]
        x = self.pos_drop(x)

        for i, blk in enumerate(self.blocks):
            x = blk(x, register_blk == i)
        x = self.norm(x)

        return x

    @torch.jit.ignore()
    def load_pretrained(self, checkpoint_path, prefix=""):
        _load_weights(self, checkpoint_path, prefix)

@torch.no_grad()
def _load_weights(model: VisionTransformer, checkpoint_path: str, prefix: str = ""):
    """Load weights from .npz checkpoints for official Google Brain Flax implementation"""
    import numpy as np

    def _n2p(w, t=True):
        if w.ndim == 4 and w.shape[0] == w.shape[1] == w.shape[2] == 1:
            w = w.flatten()
        if t:
            if w.ndim == 4:
                w = w.transpose([3, 2, 0, 1])
            elif w.ndim == 3:
                w = w.transpose([2, 0, 1])
            elif w.ndim == 2:
                w = w.transpose([1, 0])
        return torch.from_numpy(w)

    w = np.load(checkpoint_path)
    if not prefix and "opt/target/embedding/kernel" in w:
        prefix = "opt/target/"

    if hasattr(model.patch_embed, "backbone"):
        # hybrid
        backbone = model.patch_embed.backbone
        stem_only = not hasattr(backbone, "stem")
        stem = backbone if stem_only else backbone.stem
        stem.conv.weight.copy_(
            adapt_input_conv(
                stem.conv.weight.shape[1], _n2p(w[f"{prefix}conv_root/kernel"])
            )
        )
        stem.norm.weight.copy_(_n2p(w[f"{prefix}gn_root/scale"]))
        stem.norm.bias.copy_(_n2p(w[f"{prefix}gn_root/bias"]))
        if not stem_only:
            for i, stage in enumerate(backbone.stages):
                for j, block in enumerate(stage.blocks):
                    bp = f"{prefix}block{i + 1}/unit{j + 1}/"
                    for r in range(3):
                        getattr(block, f"conv{r + 1}").weight.copy_(
                            _n2p(w[f"{bp}conv{r + 1}/kernel"])
                        )
                        getattr(block, f"norm{r + 1}").weight.copy_(
                            _n2p(w[f"{bp}gn{r + 1}/scale"])
                        )
                        getattr(block, f"norm{r + 1}").bias.copy_(
                            _n2p(w[f"{bp}gn{r + 1}/bias"])
                        )
                    if block.downsample is not None:
                        block.downsample.conv.weight.copy_(
                            _n2p(w[f"{bp}conv_proj/kernel"])
                        )
                        block.downsample.norm.weight.copy_(
                            _n2p(w[f"{bp}gn_proj/scale"])
                        )
                        block.downsample.norm.bias.copy_(_n2p(w[f"{bp}gn_proj/bias"]))
        embed_conv_w = _n2p(w[f"{prefix}embedding/kernel"])
    else:
        embed_conv_w = adapt_input_conv(
            model.patch_embed.proj.weight.shape[1], _n2p(w[f"{prefix}embedding/kernel"])
        )
    model.patch_embed.proj.weight.copy_(embed_conv_w)
    model.patch_embed.proj.bias.copy_(_n2p(w[f"{prefix}embedding/bias"]))
    model.cls_token.copy_(_n2p(w[f"{prefix}cls"], t=False))
    pos_embed_w = _n2p(w[f"{prefix}Transformer/posembed_input/pos_embedding"], t=False)
    if pos_embed_w.shape != model.pos_embed.shape:
        pos_embed_w = resize_pos_embed(  # resize pos embedding when different size from pretrained weights
            pos_embed_w,
            model.pos_embed,
            getattr(model, "num_tokens", 1),
            model.patch_embed.grid_size,
        )
    model.pos_embed.copy_(pos_embed_w)
    model.norm.weight.copy_(_n2p(w[f"{prefix}Transformer/encoder_norm/scale"]))
    model.norm.bias.copy_(_n2p(w[f"{prefix}Transformer/encoder_norm/bias"]))
    #     if isinstance(model.head, nn.Linear) and model.head.bias.shape[0] == w[f'{prefix}head/bias'].shape[-1]:
    #         model.head.weight.copy_(_n2p(w[f'{prefix}head/kernel']))
    #         model.head.bias.copy_(_n2p(w[f'{prefix}head/bias']))
    #     if isinstance(getattr(model.pre_logits, 'fc', None), nn.Linear) and f'{prefix}pre_logits/bias' in w:
    #         model.pre_logits.fc.weight.copy_(_n2p(w[f'{prefix}pre_logits/kernel']))
    #         model.pre_logits.fc.bias.copy_(_n2p(w[f'{prefix}pre_logits/bias']))
    for i, block in enumerate(model.blocks.children()):
        block_prefix = f"{prefix}Transformer/encoderblock_{i}/"
        mha_prefix = block_prefix + "MultiHeadDotProductAttention_1/"
        block.norm1.weight.copy_(_n2p(w[f"{block_prefix}LayerNorm_0/scale"]))
        block.norm1.bias.copy_(_n2p(w[f"{block_prefix}LayerNorm_0/bias"]))
        block.attn.qkv.weight.copy_(
            torch.cat(
                [
                    _n2p(w[f"{mha_prefix}{n}/kernel"], t=False).flatten(1).T
                    for n in ("query", "key", "value")
                ]
            )
        )
        block.attn.qkv.bias.copy_(
            torch.cat(
                [
                    _n2p(w[f"{mha_prefix}{n}/bias"], t=False).reshape(-1)
                    for n in ("query", "key", "value")
                ]
            )
        )
        block.attn.proj.weight.copy_(_n2p(w[f"{mha_prefix}out/kernel"]).flatten(1))
        block.attn.proj.bias.copy_(_n2p(w[f"{mha_prefix}out/bias"]))
        for r in range(2):
            getattr(block.mlp, f"fc{r + 1}").weight.copy_(
                _n2p(w[f"{block_prefix}MlpBlock_3/Dense_{r}/kernel"])
            )
            getattr(block.mlp, f"fc{r + 1}").bias.copy_(
                _n2p(w[f"{block_prefix}MlpBlock_3/Dense_{r}/bias"])
            )
        block.norm2.weight.copy_(_n2p(w[f"{block_prefix}LayerNorm_2/scale"]))
        block.norm2.bias.copy_(_n2p(w[f"{block_prefix}LayerNorm_2/bias"]))

def resize_pos_embed(posemb, posemb_new, num_tokens=1, gs_new=()):
    # Rescale the grid of position embeddings when loading from state_dict. Adapted from
    # https://github.com/google-research/vision_transformer/blob/00883dd691c63a6830751563748663526e811cee/vit_jax/checkpoint.py#L224
    print("Resized position embedding: %s to %s", posemb.shape, posemb_new.shape)
    ntok_new = posemb_new.shape[1]
    if num_tokens:
        posemb_tok, posemb_grid = posemb[:, :num_tokens], posemb[0, num_tokens:]
        ntok_new -= num_tokens
    else:
        posemb_tok, posemb_grid = posemb[:, :0], posemb[0]
    gs_old = int(math.sqrt(len(posemb_grid)))
    if not len(gs_new):  # backwards compatibility
        gs_new = [int(math.sqrt(ntok_new))] * 2
    assert len(gs_new) >= 2
    print("Position embedding grid-size from %s to %s", [gs_old, gs_old], gs_new)
    posemb_grid = posemb_grid.reshape(1, gs_old, gs_old, -1).permute(0, 3, 1, 2)
    posemb_grid = F.interpolate(
        posemb_grid, size=gs_new, mode="bicubic", align_corners=False


            torch.cat(
                [
                    _n2p(w[f"{mha_prefix}{n}/bias"], t=False).reshape(-1)
                    for n in ("query", "key", "value")
                ]
            )
        )
        block.attn.proj.weight.copy_(_n2p(w[f"{mha_prefix}out/kernel"]).flatten(1))
        block.attn.proj.bias.copy_(_n2p(w[f"{mha_prefix}out/bias"]))
        for r in range(2):
            getattr(block.mlp, f"fc{r + 1}").weight.copy_(
                _n2p(w[f"{block_prefix}MlpBlock_3/Dense_{r}/kernel"])
            )
            getattr(block.mlp, f"fc{r + 1}").bias.copy_(
                _n2p(w[f"{block_prefix}MlpBlock_3/Dense_{r}/bias"])
            )
        block.norm2.weight.copy_(_n2p(w[f"{block_prefix}LayerNorm_2/scale"]))
        block.norm2.bias.copy_(_n2p(w[f"{block_prefix}LayerNorm_2/bias"]))

def resize_pos_embed(posemb, posemb_new, num_tokens=1, gs_new=()):
    # Rescale the grid of position embeddings when loading from state_dict. Adapted from
    # https://github.com/google-research/vision_transformer/blob/00883dd691c63a6830751563748663526e811cee/vit_jax/checkpoint.py#L224
    print("Resized position embedding: %s to %s", posemb.shape, posemb_new.shape)
    ntok_new = posemb_new.shape[1]
    if num_tokens:
        posemb_tok, posemb_grid = posemb[:, :num_tokens], posemb[0, num_tokens:]
        ntok_new -= num_tokens
    else:
        posemb_tok, posemb_grid = posemb[:, :0], posemb[0]
    gs_old = int(math.sqrt(len(posemb_grid)))
    if not len(gs_new):  # backwards compatibility
        gs_new = [int(math.sqrt(ntok_new))] * 2
    assert len(gs_new) >= 2
    print("Position embedding grid-size from %s to %s", [gs_old, gs_old], gs_new)
    posemb_grid = posemb_grid.reshape(1, gs_old, gs_old, -1).permute(0, 3, 1, 2)
    posemb_grid = F.interpolate(
        posemb_grid, size=gs_new, mode="bicubic", align_corners=False
    )
    posemb_grid = posemb_grid.permute(0, 2, 3, 1).reshape(1, gs_new[0] * gs_new[1], -1)
    posemb = torch.cat([posemb_tok, posemb_grid], dim=1)
    return

def interpolate_pos_embed(pos_embed_checkpoint, visual_encoder):
    # interpolate position embedding
    embedding_size = pos_embed_checkpoint.shape[-1]
    num_patches = visual_encoder.patch_embed.num_patches
    num_extra_tokens = visual_encoder.pos_embed.shape[-2] - num_patches
    # height (== width) for the checkpoint position embedding
    orig_size = int((pos_embed_checkpoint.shape[-2] - num_extra_tokens) ** 0.5)
    # height (== width) for the new position embedding
    new_size = int(num_patches**0.5)

    if orig_size != new_size:
        # class_token and dist_token are kept unchanged
        extra_tokens = pos_embed_checkpoint[:, :num_extra_tokens]
        # only the position tokens are interpolated
        pos_tokens = pos_embed_checkpoint[:, num_extra_tokens:]
        pos_tokens = pos_tokens.reshape(
            -1, orig_size, orig_size, embedding_size
        ).permute(0, 3, 1, 2)


    ntok_new = posemb_new.shape[1]
    if num_tokens:
        posemb_tok, posemb_grid = posemb[:, :num_tokens], posemb[0, num_tokens:]
        ntok_new -= num_tokens
    else:
        posemb_tok, posemb_grid = posemb[:, :0], posemb[0]
    gs_old = int(math.sqrt(len(posemb_grid)))
    if not len(gs_new):  # backwards compatibility
        gs_new = [int(math.sqrt(ntok_new))] * 2
    assert len(gs_new) >= 2
    print("Position embedding grid-size from %s to %s", [gs_old, gs_old], gs_new)
    posemb_grid = posemb_grid.reshape(1, gs_old, gs_old, -1).permute(0, 3, 1, 2)
    posemb_grid = F.interpolate(
        posemb_grid, size=gs_new, mode="bicubic", align_corners=False
    )
    posemb_grid = posemb_grid.permute(0, 2, 3, 1).reshape(1, gs_new[0] * gs_new[1], -1)
    posemb = torch.cat([posemb_tok, posemb_grid], dim=1)
    return

def interpolate_pos_embed(pos_embed_checkpoint, visual_encoder):
    # interpolate position embedding
    embedding_size = pos_embed_checkpoint.shape[-1]
    num_patches = visual_encoder.patch_embed.num_patches
    num_extra_tokens = visual_encoder.pos_embed.shape[-2] - num_patches
    # height (== width) for the checkpoint position embedding
    orig_size = int((pos_embed_checkpoint.shape[-2] - num_extra_tokens) ** 0.5)
    # height (== width) for the new position embedding
    new_size = int(num_patches**0.5)

    if orig_size != new_size:
        # class_token and dist_token are kept unchanged
        extra_tokens = pos_embed_checkpoint[:, :num_extra_tokens]
        # only the position tokens are interpolated
        pos_tokens = pos_embed_checkpoint[:, num_extra_tokens:]
        pos_tokens = pos_tokens.reshape(
            -1, orig_size, orig_size, embedding_size
        ).permute(0, 3, 1, 2)
        pos_tokens = torch.nn.functional.interpolate(
            pos_tokens, size=(new_size, new_size), mode="bicubic", align_corners=False
        )
        pos_tokens = pos_tokens.permute(0, 2, 3, 1).flatten(1, 2)
        new_pos_embed = torch.cat((extra_tokens, pos_tokens), dim=1)
        print(
            "reshape position embedding from %d to %d" % (orig_size**2, new_size**2)
        )

        return new_pos_embed
    else:
        return pos_embed_checkpoint

class VisionTransformerEncoder(VisionTransformer, BaseEncoder):
    @classmethod
    def from_config(cls, cfg, from_pretrained=False):

        vit_type = cfg.get("vit_type", "base")
        image_size = cfg.get("image_size", 384)
        ckpt_layer = cfg.get("vit_ckpt_layer", 0)
        drop_path_rate = cfg.get("vit_drop_path_rate", 0)
        norm_layer_eps = cfg.get("vit_layer_norm_epsilon", -1)
        use_grad_checkpointing = cfg.get("vit_grad_ckpt", False)

        if norm_layer_eps == -1:
            norm_layer = None
        else:
            norm_layer = partial(nn.LayerNorm, eps=norm_layer_eps)

        #     norm_layer=partial(nn.LayerNorm, eps=1e-6),
        assert vit_type in ["base", "large"], "vit parameter must be base or large"


VisionTransformerEncoder

        extra_tokens = pos_embed_checkpoint[:, :num_extra_tokens]
        # only the position tokens are interpolated
        pos_tokens = pos_embed_checkpoint[:, num_extra_tokens:]
        pos_tokens = pos_tokens.reshape(
            -1, orig_size, orig_size, embedding_size
        ).permute(0, 3, 1, 2)
        pos_tokens = torch.nn.functional.interpolate(
            pos_tokens, size=(new_size, new_size), mode="bicubic", align_corners=False
        )
        pos_tokens = pos_tokens.permute(0, 2, 3, 1).flatten(1, 2)
        new_pos_embed = torch.cat((extra_tokens, pos_tokens), dim=1)
        print(
            "reshape position embedding from %d to %d" % (orig_size**2, new_size**2)
        )

        return new_pos_embed
    else:
        return pos_embed_checkpoint

class VisionTransformerEncoder(VisionTransformer, BaseEncoder):
    @classmethod
    def from_config(cls, cfg, from_pretrained=False):

        vit_type = cfg.get("vit_type", "base")
        image_size = cfg.get("image_size", 384)
        ckpt_layer = cfg.get("vit_ckpt_layer", 0)
        drop_path_rate = cfg.get("vit_drop_path_rate", 0)
        norm_layer_eps = cfg.get("vit_layer_norm_epsilon", -1)
        use_grad_checkpointing = cfg.get("vit_grad_ckpt", False)

        if norm_layer_eps == -1:
            norm_layer = None
        else:
            norm_layer = partial(nn.LayerNorm, eps=norm_layer_eps)

        #     norm_layer=partial(nn.LayerNorm, eps=1e-6),
        assert vit_type in ["base", "large"], "vit parameter must be base or large"
        if vit_type == "base":
            vision_width = 768
            visual_encoder = cls(
                img_size=image_size,
                patch_size=16,
                embed_dim=vision_width,
                depth=12,
                num_heads=12,
                use_grad_checkpointing=use_grad_checkpointing,
                ckpt_layer=ckpt_layer,
                drop_path_rate=0 or drop_path_rate,
                norm_layer=norm_layer,
            )

            if from_pretrained:
                checkpoint = torch.hub.load_state_dict_from_url(
                    url="https://dl.fbaipublicfiles.com/deit/deit_base_patch16_224-b5f2ef4d.pth",
                    map_location="cpu",
                    check_hash=True,
                )
                state_dict = checkpoint["model"]
                state_dict["pos_embed"] = interpolate_pos_embed(
                    state_dict["pos_embed"], visual_encoder
                )
                msg = visual_encoder.load_state_dict(state_dict, strict=False)

        elif vit_type == "large":
            vision_width = 1024
            visual_encoder = cls(
                img_size=image_size,
                patch_size=16,
                embed_dim=vision_width,
                depth=24,
                num_heads=16,
                use_grad_checkpointing=use_grad_checkpointing,
                ckpt_layer=ckpt_layer,
                drop_path_rate=0.1 or drop_path_rate,
                norm_layer=norm_layer,
            )
            if from_pretrained:
                from timm.models.helpers import load_custom_pretrained
                from timm.models.vision_transformer import default_cfgs

                load_custom_pretrained(
                    visual_encoder, default_cfgs["vit_large_patch16_224_in21k"]
                )

        visual_encoder.vision_width = vision_width
        return visual_encoder

    def forward_features(self, x, register_blk=-1):
        return super().forward(x, register_blk)


            act_layer=act_layer,
            drop=drop,
        )

        if use_grad_checkpointing:
            self.attn = checkpoint_wrapper(self.attn)
            self.mlp = checkpoint_wrapper(self.mlp)

    def forward(self, x, register_hook=False):
        x = x + self.drop_path(self.attn(self.norm1(x), register_hook=register_hook))
        x = x + self.drop_path(self.mlp(self.norm2(x)))
        return x

class VisionTransformer(nn.Module):
    """Vision Transformer
    A PyTorch impl of : `An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale`  -
        https://arxiv.org/abs/2010.11929
    """

    def __init__(
        self,
        img_size=224,
        patch_size=16,
        in_chans=3,
        num_classes=1000,
        embed_dim=768,
        depth=12,
        num_heads=12,
        mlp_ratio=4.0,
        qkv_bias=True,
        qk_scale=None,
        representation_size=None,
        drop_rate=0.0,
        attn_drop_rate=0.0,
        drop_path_rate=0.0,
        norm_layer=None,
        use_grad_checkpointing=False,
        ckpt_layer=0,
    ):
        """
        Args:
            img_size (int, tuple): input image size
            patch_size (int, tuple): patch size
            in_chans (int): number of input channels
            num_classes (int): number of classes for classification head
            embed_dim (int): embedding dimension
            depth (int): depth of transformer
            num_heads (int): number of attention heads
            mlp_ratio (int): ratio of mlp hidden dim to embedding dim
            qkv_bias (bool): enable bias for qkv if True
            qk_scale (float): override default qk scale of head_dim ** -0.5 if set
            representation_size (Optional[int]): enable and set representation layer (pre-logits) to this value if set
            drop_rate (float): dropout rate
            attn_drop_rate (float): attention dropout rate
            drop_path_rate (float): stochastic depth rate
            norm_layer: (nn.Module): normalization layer
        """
        super().__init__()
        self.num_features = (
            self.embed_dim
        ) = embed_dim  # num_features for consistency with other models
        norm_layer = norm_layer or partial(nn.LayerNorm, eps=1e-6)

        self.patch_embed = PatchEmbed(
            img_size=img_size,
            patch_size=patch_size,
            in_chans=in_chans,
            embed_dim=embed_dim,
        )

        num_patches = self.patch_embed.num_patches

        self.cls_token = nn.Parameter(torch.zeros(1, 1, embed_dim))
        self.pos_embed = nn.Parameter(torch.zeros(1, num_patches + 1, embed_dim))
        self.pos_drop = nn.Dropout(p=drop_rate)

        dpr = [
            x.item() for x in torch.linspace(0, drop_path_rate, depth)
        ]  # stochastic depth decay rule
        self.blocks = nn.ModuleList(
            [
                Block(
                    dim=embed_dim,
                    num_heads=num_heads,
                    mlp_ratio=mlp_ratio,
                    qkv_bias=qkv_bias,
                    qk_scale=qk_scale,
                    drop=drop_rate,
                    attn_drop=attn_drop_rate,
                    drop_path=dpr[i],
                    norm_layer=norm_layer,
                    use_grad_checkpointing=(
                        use_grad_checkpointing and i >= depth - ckpt_layer
                    ),
                )
                for i in range(depth)
            ]
        )
        self.norm = norm_layer(embed_dim)

        trunc_normal_(self.pos_embed, std=0.02)
        trunc_normal_(self.cls_token, std=0.02)
        self.apply(self._init_weights)

    def _init_weights(self, m):
        if isinstance(m, nn.Linear):
            trunc_normal_(m.weight, std=0.02)
            if isinstance(m, nn.Linear) and m.bias is not None:
                nn.init.constant_(m.bias, 0)
        elif isinstance(m, nn.LayerNorm):
            nn.init.constant_(m.bias, 0)
            nn.init.constant_(m.weight, 1.0)

    @torch.jit.ignore
    def no_weight_decay(self):
        return {"pos_embed", "cls_token"}

    def forward(self, x, register_blk=-1):
        B = x.shape[0]
        x = self.patch_embed(x)

        cls_tokens = self.cls_token.expand(
            B, -1, -1


forward

        )
        self.norm = norm_layer(embed_dim)

        trunc_normal_(self.pos_embed, std=0.02)
        trunc_normal_(self.cls_token, std=0.02)
        self.apply(self._init_weights)

    def _init_weights(self, m):
        if isinstance(m, nn.Linear):
            trunc_normal_(m.weight, std=0.02)
            if isinstance(m, nn.Linear) and m.bias is not None:
                nn.init.constant_(m.bias, 0)
        elif isinstance(m, nn.LayerNorm):
            nn.init.constant_(m.bias, 0)
            nn.init.constant_(m.weight, 1.0)

    @torch.jit.ignore
    def no_weight_decay(self):
        return {"pos_embed", "cls_token"}

    def forward(self, x, register_blk=-1):
        B = x.shape[0]
        x = self.patch_embed(x)

        cls_tokens = self.cls_token.expand(
            B, -1, -1
        )  # stole cls_tokens impl from Phil Wang, thanks
        x = torch.cat((cls_tokens, x), dim=1)

        x = x + self.pos_embed[:, : x.size(1), :]
        x = self.pos_drop(x)

        for i, blk in enumerate(self.blocks):
            x = blk(x, register_blk == i)
        x = self.norm(x)

        return x

    @torch.jit.ignore()
    def load_pretrained(self, checkpoint_path, prefix=""):
        _load_weights(self, checkpoint_path, prefix)

@torch.no_grad()
def _load_weights(model: VisionTransformer, checkpoint_path: str, prefix: str = ""):
    """Load weights from .npz checkpoints for official Google Brain Flax implementation"""
    import numpy as np

    def _n2p(w, t=True):
        if w.ndim == 4 and w.shape[0] == w.shape[1] == w.shape[2] == 1:
            w = w.flatten()
        if t:
            if w.ndim == 4:
                w = w.transpose([3, 2, 0, 1])
            elif w.ndim == 3:
                w = w.transpose([2, 0, 1])
            elif w.ndim == 2:


        self,
        dim,
        num_heads=8,
        qkv_bias=False,
        qk_scale=None,
        attn_drop=0.0,
        proj_drop=0.0,
    ):
        super().__init__()
        self.num_heads = num_heads
        head_dim = dim // num_heads
        # NOTE scale factor was wrong in my original version, can set manually to be compat with prev weights
        self.scale = qk_scale or head_dim**-0.5
        self.qkv = nn.Linear(dim, dim * 3, bias=qkv_bias)
        self.attn_drop = nn.Dropout(attn_drop)
        self.proj = nn.Linear(dim, dim)
        self.proj_drop = nn.Dropout(proj_drop)
        self.attn_gradients = None
        self.attention_map = None

    def save_attn_gradients(self, attn_gradients):
        self.attn_gradients = attn_gradients

    def get_attn_gradients(self):
        return self.attn_gradients

    def save_attention_map(self, attention_map):
        self.attention_map = attention_map

    def get_attention_map(self):
        return self.attention_map

    def forward(self, x, register_hook=False):
        B, N, C = x.shape
        qkv = (
            self.qkv(x)
            .reshape(B, N, 3, self.num_heads, C // self.num_heads)
            .permute(2, 0, 3, 1, 4)
        )
        q, k, v = (
            qkv[0],
            qkv[1],


        qkv_bias=False,
        qk_scale=None,
        attn_drop=0.0,
        proj_drop=0.0,
    ):
        super().__init__()
        self.num_heads = num_heads
        head_dim = dim // num_heads
        # NOTE scale factor was wrong in my original version, can set manually to be compat with prev weights
        self.scale = qk_scale or head_dim**-0.5
        self.qkv = nn.Linear(dim, dim * 3, bias=qkv_bias)
        self.attn_drop = nn.Dropout(attn_drop)
        self.proj = nn.Linear(dim, dim)
        self.proj_drop = nn.Dropout(proj_drop)
        self.attn_gradients = None
        self.attention_map = None

    def save_attn_gradients(self, attn_gradients):
        self.attn_gradients = attn_gradients

    def get_attn_gradients(self):
        return self.attn_gradients

    def save_attention_map(self, attention_map):
        self.attention_map = attention_map

    def get_attention_map(self):
        return self.attention_map

    def forward(self, x, register_hook=False):
        B, N, C = x.shape
        qkv = (
            self.qkv(x)
            .reshape(B, N, 3, self.num_heads, C // self.num_heads)
            .permute(2, 0, 3, 1, 4)
        )
        q, k, v = (
            qkv[0],
            qkv[1],
            qkv[2],
        )  # make torchscript happy (cannot use tensor as tuple)


        proj_drop=0.0,
    ):
        super().__init__()
        self.num_heads = num_heads
        head_dim = dim // num_heads
        # NOTE scale factor was wrong in my original version, can set manually to be compat with prev weights
        self.scale = qk_scale or head_dim**-0.5
        self.qkv = nn.Linear(dim, dim * 3, bias=qkv_bias)
        self.attn_drop = nn.Dropout(attn_drop)
        self.proj = nn.Linear(dim, dim)
        self.proj_drop = nn.Dropout(proj_drop)
        self.attn_gradients = None
        self.attention_map = None

    def save_attn_gradients(self, attn_gradients):
        self.attn_gradients = attn_gradients

    def get_attn_gradients(self):
        return self.attn_gradients

    def save_attention_map(self, attention_map):
        self.attention_map = attention_map

    def get_attention_map(self):
        return self.attention_map

    def forward(self, x, register_hook=False):
        B, N, C = x.shape
        qkv = (
            self.qkv(x)
            .reshape(B, N, 3, self.num_heads, C // self.num_heads)
            .permute(2, 0, 3, 1, 4)
        )
        q, k, v = (
            qkv[0],
            qkv[1],
            qkv[2],
        )  # make torchscript happy (cannot use tensor as tuple)

        attn = (q @ k.transpose(-2, -1)) * self.scale
        attn = attn.softmax(dim=-1)
        attn = self.attn_drop(attn)


        self.num_heads = num_heads
        head_dim = dim // num_heads
        # NOTE scale factor was wrong in my original version, can set manually to be compat with prev weights
        self.scale = qk_scale or head_dim**-0.5
        self.qkv = nn.Linear(dim, dim * 3, bias=qkv_bias)
        self.attn_drop = nn.Dropout(attn_drop)
        self.proj = nn.Linear(dim, dim)
        self.proj_drop = nn.Dropout(proj_drop)
        self.attn_gradients = None
        self.attention_map = None

    def save_attn_gradients(self, attn_gradients):
        self.attn_gradients = attn_gradients

    def get_attn_gradients(self):
        return self.attn_gradients

    def save_attention_map(self, attention_map):
        self.attention_map = attention_map

    def get_attention_map(self):
        return self.attention_map

    def forward(self, x, register_hook=False):
        B, N, C = x.shape
        qkv = (
            self.qkv(x)
            .reshape(B, N, 3, self.num_heads, C // self.num_heads)
            .permute(2, 0, 3, 1, 4)
        )
        q, k, v = (
            qkv[0],
            qkv[1],
            qkv[2],
        )  # make torchscript happy (cannot use tensor as tuple)

        attn = (q @ k.transpose(-2, -1)) * self.scale
        attn = attn.softmax(dim=-1)
        attn = self.attn_drop(attn)

        if register_hook:
            self.save_attention_map(attn)


                    mlp_ratio=mlp_ratio,
                    qkv_bias=qkv_bias,
                    qk_scale=qk_scale,
                    drop=drop_rate,
                    attn_drop=attn_drop_rate,
                    drop_path=dpr[i],
                    norm_layer=norm_layer,
                    use_grad_checkpointing=(
                        use_grad_checkpointing and i >= depth - ckpt_layer
                    ),
                )
                for i in range(depth)
            ]
        )
        self.norm = norm_layer(embed_dim)

        trunc_normal_(self.pos_embed, std=0.02)
        trunc_normal_(self.cls_token, std=0.02)
        self.apply(self._init_weights)

    def _init_weights(self, m):
        if isinstance(m, nn.Linear):
            trunc_normal_(m.weight, std=0.02)
            if isinstance(m, nn.Linear) and m.bias is not None:
                nn.init.constant_(m.bias, 0)
        elif isinstance(m, nn.LayerNorm):
            nn.init.constant_(m.bias, 0)
            nn.init.constant_(m.weight, 1.0)

    @torch.jit.ignore
    def no_weight_decay(self):
        return {"pos_embed", "cls_token"}

    def forward(self, x, register_blk=-1):
        B = x.shape[0]
        x = self.patch_embed(x)

        cls_tokens = self.cls_token.expand(
            B, -1, -1
        )  # stole cls_tokens impl from Phil Wang, thanks
        x = torch.cat((cls_tokens, x), dim=1)

        x = x + self.pos_embed[:, : x.size(1), :]
        x = self.pos_drop(x)

        for i, blk in enumerate(self.blocks):
            x = blk(x, register_blk == i)
        x = self.norm(x)


                )
                for i in range(depth)
            ]
        )
        self.norm = norm_layer(embed_dim)

        trunc_normal_(self.pos_embed, std=0.02)
        trunc_normal_(self.cls_token, std=0.02)
        self.apply(self._init_weights)

    def _init_weights(self, m):
        if isinstance(m, nn.Linear):
            trunc_normal_(m.weight, std=0.02)
            if isinstance(m, nn.Linear) and m.bias is not None:
                nn.init.constant_(m.bias, 0)
        elif isinstance(m, nn.LayerNorm):
            nn.init.constant_(m.bias, 0)
            nn.init.constant_(m.weight, 1.0)

    @torch.jit.ignore
    def no_weight_decay(self):
        return {"pos_embed", "cls_token"}

    def forward(self, x, register_blk=-1):
        B = x.shape[0]
        x = self.patch_embed(x)

        cls_tokens = self.cls_token.expand(
            B, -1, -1
        )  # stole cls_tokens impl from Phil Wang, thanks
        x = torch.cat((cls_tokens, x), dim=1)

        x = x + self.pos_embed[:, : x.size(1), :]
        x = self.pos_drop(x)

        for i, blk in enumerate(self.blocks):
            x = blk(x, register_blk == i)
        x = self.norm(x)

        return x

    @torch.jit.ignore()


    def forward(self, x, register_blk=-1):
        B = x.shape[0]
        x = self.patch_embed(x)

        cls_tokens = self.cls_token.expand(
            B, -1, -1
        )  # stole cls_tokens impl from Phil Wang, thanks
        x = torch.cat((cls_tokens, x), dim=1)

        x = x + self.pos_embed[:, : x.size(1), :]
        x = self.pos_drop(x)

        for i, blk in enumerate(self.blocks):
            x = blk(x, register_blk == i)
        x = self.norm(x)

        return x

    @torch.jit.ignore()
    def load_pretrained(self, checkpoint_path, prefix=""):
        _load_weights(self, checkpoint_path, prefix)

@torch.no_grad()
def _load_weights(model: VisionTransformer, checkpoint_path: str, prefix: str = ""):
    """Load weights from .npz checkpoints for official Google Brain Flax implementation"""
    import numpy as np

    def _n2p(w, t=True):
        if w.ndim == 4 and w.shape[0] == w.shape[1] == w.shape[2] == 1:
            w = w.flatten()
        if t:
            if w.ndim == 4:
                w = w.transpose([3, 2, 0, 1])
            elif w.ndim == 3:
                w = w.transpose([2, 0, 1])
            elif w.ndim == 2:
                w = w.transpose([1, 0])
        return torch.from_numpy(w)

    w = np.load(checkpoint_path)


        x = x + self.pos_embed[:, : x.size(1), :]
        x = self.pos_drop(x)

        for i, blk in enumerate(self.blocks):
            x = blk(x, register_blk == i)
        x = self.norm(x)

        return x

    @torch.jit.ignore()
    def load_pretrained(self, checkpoint_path, prefix=""):
        _load_weights(self, checkpoint_path, prefix)

@torch.no_grad()
def _load_weights(model: VisionTransformer, checkpoint_path: str, prefix: str = ""):
    """Load weights from .npz checkpoints for official Google Brain Flax implementation"""
    import numpy as np

    def _n2p(w, t=True):
        if w.ndim == 4 and w.shape[0] == w.shape[1] == w.shape[2] == 1:
            w = w.flatten()
        if t:
            if w.ndim == 4:
                w = w.transpose([3, 2, 0, 1])
            elif w.ndim == 3:
                w = w.transpose([2, 0, 1])
            elif w.ndim == 2:
                w = w.transpose([1, 0])
        return torch.from_numpy(w)

    w = np.load(checkpoint_path)
    if not prefix and "opt/target/embedding/kernel" in w:
        prefix = "opt/target/"

    if hasattr(model.patch_embed, "backbone"):
        # hybrid
        backbone = model.patch_embed.backbone
        stem_only = not hasattr(backbone, "stem")
        stem = backbone if stem_only else backbone.stem
        stem.conv.weight.copy_(
            adapt_input_conv(
                stem.conv.weight.shape[1], _n2p(w[f"{prefix}conv_root/kernel"])
            )
        )
        stem.norm.weight.copy_(_n2p(w[f"{prefix}gn_root/scale"]))
        stem.norm.bias.copy_(_n2p(w[f"{prefix}gn_root/bias"]))
        if not stem_only:
            for i, stage in enumerate(backbone.stages):
                for j, block in enumerate(stage.blocks):


        pos_tokens = pos_embed_checkpoint[:, num_extra_tokens:]
        pos_tokens = pos_tokens.reshape(
            -1, orig_size, orig_size, embedding_size
        ).permute(0, 3, 1, 2)
        pos_tokens = torch.nn.functional.interpolate(
            pos_tokens, size=(new_size, new_size), mode="bicubic", align_corners=False
        )
        pos_tokens = pos_tokens.permute(0, 2, 3, 1).flatten(1, 2)
        new_pos_embed = torch.cat((extra_tokens, pos_tokens), dim=1)
        print(
            "reshape position embedding from %d to %d" % (orig_size**2, new_size**2)
        )

        return new_pos_embed
    else:
        return pos_embed_checkpoint

class VisionTransformerEncoder(VisionTransformer, BaseEncoder):
    @classmethod
    def from_config(cls, cfg, from_pretrained=False):

        vit_type = cfg.get("vit_type", "base")
        image_size = cfg.get("image_size", 384)
        ckpt_layer = cfg.get("vit_ckpt_layer", 0)
        drop_path_rate = cfg.get("vit_drop_path_rate", 0)
        norm_layer_eps = cfg.get("vit_layer_norm_epsilon", -1)
        use_grad_checkpointing = cfg.get("vit_grad_ckpt", False)

        if norm_layer_eps == -1:
            norm_layer = None
        else:
            norm_layer = partial(nn.LayerNorm, eps=norm_layer_eps)

        #     norm_layer=partial(nn.LayerNorm, eps=1e-6),
        assert vit_type in ["base", "large"], "vit parameter must be base or large"
        if vit_type == "base":
            vision_width = 768
            visual_encoder = cls(
                img_size=image_size,
                patch_size=16,
                embed_dim=vision_width,
                depth=12,
                num_heads=12,
                use_grad_checkpointing=use_grad_checkpointing,
                ckpt_layer=ckpt_layer,
                drop_path_rate=0 or drop_path_rate,
                norm_layer=norm_layer,
            )

            if from_pretrained:
                checkpoint = torch.hub.load_state_dict_from_url(
                    url="https://dl.fbaipublicfiles.com/deit/deit_base_patch16_224-b5f2ef4d.pth",
                    map_location="cpu",
                    check_hash=True,
                )
                state_dict = checkpoint["model"]
                state_dict["pos_embed"] = interpolate_pos_embed(
                    state_dict["pos_embed"], visual_encoder
                )
                msg = visual_encoder.load_state_dict(state_dict, strict=False)

        elif vit_type == "large":
            vision_width = 1024
            visual_encoder = cls(
                img_size=image_size,
                patch_size=16,
                embed_dim=vision_width,
                depth=24,
                num_heads=16,
                use_grad_checkpointing=use_grad_checkpointing,
                ckpt_layer=ckpt_layer,
                drop_path_rate=0.1 or drop_path_rate,
                norm_layer=norm_layer,
            )
            if from_pretrained:
                from timm.models.helpers import load_custom_pretrained
                from timm.models.vision_transformer import default_cfgs

                load_custom_pretrained(
                    visual_encoder, default_cfgs["vit_large_patch16_224_in21k"]
                )

        visual_encoder.vision_width = vision_width
        return visual_encoder

    def forward_features(self, x, register_blk=-1):
        return super().forward(x, register_blk)


                patch_size=16,
                embed_dim=vision_width,
                depth=24,
                num_heads=16,
                use_grad_checkpointing=use_grad_checkpointing,
                ckpt_layer=ckpt_layer,
                drop_path_rate=0.1 or drop_path_rate,
                norm_layer=norm_layer,
            )
            if from_pretrained:
                from timm.models.helpers import load_custom_pretrained
                from timm.models.vision_transformer import default_cfgs

                load_custom_pretrained(
                    visual_encoder, default_cfgs["vit_large_patch16_224_in21k"]
                )

        visual_encoder.vision_width = vision_width
        return visual_encoder

    def forward_features(self, x, register_blk=-1):
        return super().forward(x, register_blk)