PoorOtterBob commited on
Commit
a375e39
·
verified ·
1 Parent(s): 653040f

Add files using upload-large-folder tool

Browse files
Files changed (26) hide show
  1. .gitattributes +22 -0
  2. data/prepared_sources/allen_mouse_reference_03390dd0/counts.mtx +3 -0
  3. data/prepared_sources/allen_mouse_reference_03390dd0/obs.csv +3 -0
  4. data/prepared_sources/allen_mouse_reference_bf8cb800/counts.mtx +3 -0
  5. data/prepared_sources/allen_mouse_reference_e63beb9b/obs.csv +3 -0
  6. data/prepared_sources/mouse_whole_brain_wmb_10xv3_isocortex_2_log2/obs.csv +3 -0
  7. data/query/kukanja/kukanja_ms.npz +3 -0
  8. data/query/seaad/seaad_merfish_140gene_test.h5ad +3 -0
  9. data/raw/seaad_donor_h5ad/H18.30.002.h5ad +3 -0
  10. data/raw/seaad_donor_h5ad/H19.30.002.h5ad +3 -0
  11. data/raw/seaad_donor_h5ad/H19.33.004.h5ad +3 -0
  12. data/raw/seaad_donor_h5ad/H20.33.001.h5ad +3 -0
  13. data/raw/seaad_donor_h5ad/H20.33.005.h5ad +3 -0
  14. data/raw/seaad_donor_h5ad/H20.33.008.h5ad +3 -0
  15. external/SEA-AD/MJM/data/global_data.npz +3 -0
  16. external/SEA-AD/MJM/src/models/scGPT/merfish_indices.npy +3 -0
  17. vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/test_data/H20.33.005.h5ad +3 -0
  18. vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/test_data/H20.33.008.h5ad +3 -0
  19. vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H18.30.001.h5ad +3 -0
  20. vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H18.30.002.h5ad +3 -0
  21. vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H19.30.001.h5ad +3 -0
  22. vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H19.30.002.h5ad +3 -0
  23. vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H19.33.004.h5ad +3 -0
  24. vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H20.33.001.h5ad +3 -0
  25. vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H20.33.002.h5ad +3 -0
  26. vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/val_data/H20.33.004.h5ad +3 -0
.gitattributes CHANGED
@@ -65,3 +65,25 @@ data/prepared_sources/spinal_gse190442/counts.mtx filter=lfs diff=lfs merge=lfs
65
  data/prepared_sources/allen_mouse_reference_fbe9c55e/obs.csv filter=lfs diff=lfs merge=lfs -text
66
  data/prepared_sources/allen_mouse_reference_fbe9c55e/counts.mtx filter=lfs diff=lfs merge=lfs -text
67
  data/prepared_sources/human_whole_brain_whb_10xv3_nonneurons_log2/counts.mtx filter=lfs diff=lfs merge=lfs -text
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
65
  data/prepared_sources/allen_mouse_reference_fbe9c55e/obs.csv filter=lfs diff=lfs merge=lfs -text
66
  data/prepared_sources/allen_mouse_reference_fbe9c55e/counts.mtx filter=lfs diff=lfs merge=lfs -text
67
  data/prepared_sources/human_whole_brain_whb_10xv3_nonneurons_log2/counts.mtx filter=lfs diff=lfs merge=lfs -text
68
+ data/prepared_sources/allen_mouse_reference_bf8cb800/counts.mtx filter=lfs diff=lfs merge=lfs -text
69
+ data/prepared_sources/allen_mouse_reference_e63beb9b/obs.csv filter=lfs diff=lfs merge=lfs -text
70
+ data/prepared_sources/allen_mouse_reference_03390dd0/obs.csv filter=lfs diff=lfs merge=lfs -text
71
+ data/prepared_sources/mouse_whole_brain_wmb_10xv3_isocortex_2_log2/obs.csv filter=lfs diff=lfs merge=lfs -text
72
+ data/query/seaad/seaad_merfish_140gene_test.h5ad filter=lfs diff=lfs merge=lfs -text
73
+ data/raw/seaad_donor_h5ad/H19.30.002.h5ad filter=lfs diff=lfs merge=lfs -text
74
+ vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/test_data/H20.33.008.h5ad filter=lfs diff=lfs merge=lfs -text
75
+ vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H20.33.001.h5ad filter=lfs diff=lfs merge=lfs -text
76
+ vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H18.30.001.h5ad filter=lfs diff=lfs merge=lfs -text
77
+ vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H19.30.002.h5ad filter=lfs diff=lfs merge=lfs -text
78
+ vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H20.33.002.h5ad filter=lfs diff=lfs merge=lfs -text
79
+ vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H18.30.002.h5ad filter=lfs diff=lfs merge=lfs -text
80
+ vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/val_data/H20.33.004.h5ad filter=lfs diff=lfs merge=lfs -text
81
+ vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/test_data/H20.33.005.h5ad filter=lfs diff=lfs merge=lfs -text
82
+ vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H19.30.001.h5ad filter=lfs diff=lfs merge=lfs -text
83
+ vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H19.33.004.h5ad filter=lfs diff=lfs merge=lfs -text
84
+ data/raw/seaad_donor_h5ad/H19.33.004.h5ad filter=lfs diff=lfs merge=lfs -text
85
+ data/raw/seaad_donor_h5ad/H18.30.002.h5ad filter=lfs diff=lfs merge=lfs -text
86
+ data/raw/seaad_donor_h5ad/H20.33.001.h5ad filter=lfs diff=lfs merge=lfs -text
87
+ data/prepared_sources/allen_mouse_reference_03390dd0/counts.mtx filter=lfs diff=lfs merge=lfs -text
88
+ data/raw/seaad_donor_h5ad/H20.33.008.h5ad filter=lfs diff=lfs merge=lfs -text
89
+ data/raw/seaad_donor_h5ad/H20.33.005.h5ad filter=lfs diff=lfs merge=lfs -text
data/prepared_sources/allen_mouse_reference_03390dd0/counts.mtx ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:85fc6afd2874512365f9325fa9ac8faf6e5d45184ac89fb2a4753c08f3c67340
3
+ size 611498024
data/prepared_sources/allen_mouse_reference_03390dd0/obs.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:771c8511528304e5f3549b9097a1a84f057903f26b81680772da299a76c8d755
3
+ size 19081692
data/prepared_sources/allen_mouse_reference_bf8cb800/counts.mtx ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:3137e2701515f2950e7c691163ee11728eb9f0a3d9df566c706b02bb3bed9f2f
3
+ size 117941040
data/prepared_sources/allen_mouse_reference_e63beb9b/obs.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:7f7ef1c324519f300d7a302dafdd50127d9aeca204217109f5cf6eb06afb60d5
3
+ size 23172046
data/prepared_sources/mouse_whole_brain_wmb_10xv3_isocortex_2_log2/obs.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:0ce0ef26e85150fd1a8f44735258a445d7fc15fcb63d27ca0a76c53b16667b52
3
+ size 15416342
data/query/kukanja/kukanja_ms.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:fac509eb912ae66fdd7d187445db124fc7338d3c7dd50377d04fb21fa951e822
3
+ size 61627348
data/query/seaad/seaad_merfish_140gene_test.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d867da4206077440a59d1cd58a8959d1bf8d58e8db4403aae16ad9fd99b3b413
3
+ size 949812
data/raw/seaad_donor_h5ad/H18.30.002.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:718553b75c7f789c8b78a95e95498e818cde806037a872645ae1ae78ee9d7a64
3
+ size 3036097641
data/raw/seaad_donor_h5ad/H19.30.002.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:2b57415ece19e2dac6393ead6b5c5e6a0f6389f1cd49dfe7edd078bc7c86dab5
3
+ size 2796848113
data/raw/seaad_donor_h5ad/H19.33.004.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:70fea9f11c0b5bbc3eaded3f86c5d29c242db518daa14689f3f714be257d15d0
3
+ size 2366575337
data/raw/seaad_donor_h5ad/H20.33.001.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:5ec17b1a943b4be01dfeaf9767fcb5a3047d494baefd93aa2a5924da67fc4dc0
3
+ size 1878753001
data/raw/seaad_donor_h5ad/H20.33.005.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:974dd65f651a1dd312df62374243b1a66c8e501fdfa51f077e5b3bac7267d730
3
+ size 2225379089
data/raw/seaad_donor_h5ad/H20.33.008.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:bd1a7111a1f3188582c34d04b1022ab02f921fbf2509933c94a0bfaa267b6d7f
3
+ size 859531953
external/SEA-AD/MJM/data/global_data.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:6f1f954223dd49edc620885f1ea600e16951c863c264874a1b696103401880d9
3
+ size 149509537
external/SEA-AD/MJM/src/models/scGPT/merfish_indices.npy ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:cd8b108832911f397c8d6a1ccd6054b9ca9d060c65f60739df001841b9008003
3
+ size 1248
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/test_data/H20.33.005.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:974dd65f651a1dd312df62374243b1a66c8e501fdfa51f077e5b3bac7267d730
3
+ size 2225379089
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/test_data/H20.33.008.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:bd1a7111a1f3188582c34d04b1022ab02f921fbf2509933c94a0bfaa267b6d7f
3
+ size 859531953
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H18.30.001.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:2b814770b9dc1d4a83cefdcafe93ba5e9504f4df1108534033fa9ba39669880a
3
+ size 1539467820
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H18.30.002.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:718553b75c7f789c8b78a95e95498e818cde806037a872645ae1ae78ee9d7a64
3
+ size 3036097641
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H19.30.001.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:971d9fd7a9f41fc058f1540e242698d64d6b81c93f857f0ac32d48158bb544e6
3
+ size 4505776881
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H19.30.002.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:2b57415ece19e2dac6393ead6b5c5e6a0f6389f1cd49dfe7edd078bc7c86dab5
3
+ size 2796848113
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H19.33.004.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:70fea9f11c0b5bbc3eaded3f86c5d29c242db518daa14689f3f714be257d15d0
3
+ size 2366575337
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H20.33.001.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:5ec17b1a943b4be01dfeaf9767fcb5a3047d494baefd93aa2a5924da67fc4dc0
3
+ size 1878753001
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H20.33.002.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a7ecfbdd0e3da0144b140e4a894c27bd43000030e50e678b8e23109ad99f40b4
3
+ size 1826527193
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/val_data/H20.33.004.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:6cdd68f5c5d1d0475d16f1ed815530b9af72541476d318af00ff59bc8ae18dda
3
+ size 2099973617