Add files using upload-large-folder tool
Browse files- .gitattributes +22 -0
- data/prepared_sources/allen_mouse_reference_03390dd0/counts.mtx +3 -0
- data/prepared_sources/allen_mouse_reference_03390dd0/obs.csv +3 -0
- data/prepared_sources/allen_mouse_reference_bf8cb800/counts.mtx +3 -0
- data/prepared_sources/allen_mouse_reference_e63beb9b/obs.csv +3 -0
- data/prepared_sources/mouse_whole_brain_wmb_10xv3_isocortex_2_log2/obs.csv +3 -0
- data/query/kukanja/kukanja_ms.npz +3 -0
- data/query/seaad/seaad_merfish_140gene_test.h5ad +3 -0
- data/raw/seaad_donor_h5ad/H18.30.002.h5ad +3 -0
- data/raw/seaad_donor_h5ad/H19.30.002.h5ad +3 -0
- data/raw/seaad_donor_h5ad/H19.33.004.h5ad +3 -0
- data/raw/seaad_donor_h5ad/H20.33.001.h5ad +3 -0
- data/raw/seaad_donor_h5ad/H20.33.005.h5ad +3 -0
- data/raw/seaad_donor_h5ad/H20.33.008.h5ad +3 -0
- external/SEA-AD/MJM/data/global_data.npz +3 -0
- external/SEA-AD/MJM/src/models/scGPT/merfish_indices.npy +3 -0
- vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/test_data/H20.33.005.h5ad +3 -0
- vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/test_data/H20.33.008.h5ad +3 -0
- vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H18.30.001.h5ad +3 -0
- vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H18.30.002.h5ad +3 -0
- vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H19.30.001.h5ad +3 -0
- vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H19.30.002.h5ad +3 -0
- vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H19.33.004.h5ad +3 -0
- vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H20.33.001.h5ad +3 -0
- vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H20.33.002.h5ad +3 -0
- vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/val_data/H20.33.004.h5ad +3 -0
.gitattributes
CHANGED
|
@@ -65,3 +65,25 @@ data/prepared_sources/spinal_gse190442/counts.mtx filter=lfs diff=lfs merge=lfs
|
|
| 65 |
data/prepared_sources/allen_mouse_reference_fbe9c55e/obs.csv filter=lfs diff=lfs merge=lfs -text
|
| 66 |
data/prepared_sources/allen_mouse_reference_fbe9c55e/counts.mtx filter=lfs diff=lfs merge=lfs -text
|
| 67 |
data/prepared_sources/human_whole_brain_whb_10xv3_nonneurons_log2/counts.mtx filter=lfs diff=lfs merge=lfs -text
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 65 |
data/prepared_sources/allen_mouse_reference_fbe9c55e/obs.csv filter=lfs diff=lfs merge=lfs -text
|
| 66 |
data/prepared_sources/allen_mouse_reference_fbe9c55e/counts.mtx filter=lfs diff=lfs merge=lfs -text
|
| 67 |
data/prepared_sources/human_whole_brain_whb_10xv3_nonneurons_log2/counts.mtx filter=lfs diff=lfs merge=lfs -text
|
| 68 |
+
data/prepared_sources/allen_mouse_reference_bf8cb800/counts.mtx filter=lfs diff=lfs merge=lfs -text
|
| 69 |
+
data/prepared_sources/allen_mouse_reference_e63beb9b/obs.csv filter=lfs diff=lfs merge=lfs -text
|
| 70 |
+
data/prepared_sources/allen_mouse_reference_03390dd0/obs.csv filter=lfs diff=lfs merge=lfs -text
|
| 71 |
+
data/prepared_sources/mouse_whole_brain_wmb_10xv3_isocortex_2_log2/obs.csv filter=lfs diff=lfs merge=lfs -text
|
| 72 |
+
data/query/seaad/seaad_merfish_140gene_test.h5ad filter=lfs diff=lfs merge=lfs -text
|
| 73 |
+
data/raw/seaad_donor_h5ad/H19.30.002.h5ad filter=lfs diff=lfs merge=lfs -text
|
| 74 |
+
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/test_data/H20.33.008.h5ad filter=lfs diff=lfs merge=lfs -text
|
| 75 |
+
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H20.33.001.h5ad filter=lfs diff=lfs merge=lfs -text
|
| 76 |
+
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H18.30.001.h5ad filter=lfs diff=lfs merge=lfs -text
|
| 77 |
+
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H19.30.002.h5ad filter=lfs diff=lfs merge=lfs -text
|
| 78 |
+
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H20.33.002.h5ad filter=lfs diff=lfs merge=lfs -text
|
| 79 |
+
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H18.30.002.h5ad filter=lfs diff=lfs merge=lfs -text
|
| 80 |
+
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/val_data/H20.33.004.h5ad filter=lfs diff=lfs merge=lfs -text
|
| 81 |
+
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/test_data/H20.33.005.h5ad filter=lfs diff=lfs merge=lfs -text
|
| 82 |
+
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H19.30.001.h5ad filter=lfs diff=lfs merge=lfs -text
|
| 83 |
+
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H19.33.004.h5ad filter=lfs diff=lfs merge=lfs -text
|
| 84 |
+
data/raw/seaad_donor_h5ad/H19.33.004.h5ad filter=lfs diff=lfs merge=lfs -text
|
| 85 |
+
data/raw/seaad_donor_h5ad/H18.30.002.h5ad filter=lfs diff=lfs merge=lfs -text
|
| 86 |
+
data/raw/seaad_donor_h5ad/H20.33.001.h5ad filter=lfs diff=lfs merge=lfs -text
|
| 87 |
+
data/prepared_sources/allen_mouse_reference_03390dd0/counts.mtx filter=lfs diff=lfs merge=lfs -text
|
| 88 |
+
data/raw/seaad_donor_h5ad/H20.33.008.h5ad filter=lfs diff=lfs merge=lfs -text
|
| 89 |
+
data/raw/seaad_donor_h5ad/H20.33.005.h5ad filter=lfs diff=lfs merge=lfs -text
|
data/prepared_sources/allen_mouse_reference_03390dd0/counts.mtx
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:85fc6afd2874512365f9325fa9ac8faf6e5d45184ac89fb2a4753c08f3c67340
|
| 3 |
+
size 611498024
|
data/prepared_sources/allen_mouse_reference_03390dd0/obs.csv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:771c8511528304e5f3549b9097a1a84f057903f26b81680772da299a76c8d755
|
| 3 |
+
size 19081692
|
data/prepared_sources/allen_mouse_reference_bf8cb800/counts.mtx
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:3137e2701515f2950e7c691163ee11728eb9f0a3d9df566c706b02bb3bed9f2f
|
| 3 |
+
size 117941040
|
data/prepared_sources/allen_mouse_reference_e63beb9b/obs.csv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:7f7ef1c324519f300d7a302dafdd50127d9aeca204217109f5cf6eb06afb60d5
|
| 3 |
+
size 23172046
|
data/prepared_sources/mouse_whole_brain_wmb_10xv3_isocortex_2_log2/obs.csv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:0ce0ef26e85150fd1a8f44735258a445d7fc15fcb63d27ca0a76c53b16667b52
|
| 3 |
+
size 15416342
|
data/query/kukanja/kukanja_ms.npz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:fac509eb912ae66fdd7d187445db124fc7338d3c7dd50377d04fb21fa951e822
|
| 3 |
+
size 61627348
|
data/query/seaad/seaad_merfish_140gene_test.h5ad
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:d867da4206077440a59d1cd58a8959d1bf8d58e8db4403aae16ad9fd99b3b413
|
| 3 |
+
size 949812
|
data/raw/seaad_donor_h5ad/H18.30.002.h5ad
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:718553b75c7f789c8b78a95e95498e818cde806037a872645ae1ae78ee9d7a64
|
| 3 |
+
size 3036097641
|
data/raw/seaad_donor_h5ad/H19.30.002.h5ad
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:2b57415ece19e2dac6393ead6b5c5e6a0f6389f1cd49dfe7edd078bc7c86dab5
|
| 3 |
+
size 2796848113
|
data/raw/seaad_donor_h5ad/H19.33.004.h5ad
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:70fea9f11c0b5bbc3eaded3f86c5d29c242db518daa14689f3f714be257d15d0
|
| 3 |
+
size 2366575337
|
data/raw/seaad_donor_h5ad/H20.33.001.h5ad
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:5ec17b1a943b4be01dfeaf9767fcb5a3047d494baefd93aa2a5924da67fc4dc0
|
| 3 |
+
size 1878753001
|
data/raw/seaad_donor_h5ad/H20.33.005.h5ad
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:974dd65f651a1dd312df62374243b1a66c8e501fdfa51f077e5b3bac7267d730
|
| 3 |
+
size 2225379089
|
data/raw/seaad_donor_h5ad/H20.33.008.h5ad
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:bd1a7111a1f3188582c34d04b1022ab02f921fbf2509933c94a0bfaa267b6d7f
|
| 3 |
+
size 859531953
|
external/SEA-AD/MJM/data/global_data.npz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:6f1f954223dd49edc620885f1ea600e16951c863c264874a1b696103401880d9
|
| 3 |
+
size 149509537
|
external/SEA-AD/MJM/src/models/scGPT/merfish_indices.npy
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:cd8b108832911f397c8d6a1ccd6054b9ca9d060c65f60739df001841b9008003
|
| 3 |
+
size 1248
|
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/test_data/H20.33.005.h5ad
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:974dd65f651a1dd312df62374243b1a66c8e501fdfa51f077e5b3bac7267d730
|
| 3 |
+
size 2225379089
|
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/test_data/H20.33.008.h5ad
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:bd1a7111a1f3188582c34d04b1022ab02f921fbf2509933c94a0bfaa267b6d7f
|
| 3 |
+
size 859531953
|
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H18.30.001.h5ad
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:2b814770b9dc1d4a83cefdcafe93ba5e9504f4df1108534033fa9ba39669880a
|
| 3 |
+
size 1539467820
|
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H18.30.002.h5ad
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:718553b75c7f789c8b78a95e95498e818cde806037a872645ae1ae78ee9d7a64
|
| 3 |
+
size 3036097641
|
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H19.30.001.h5ad
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:971d9fd7a9f41fc058f1540e242698d64d6b81c93f857f0ac32d48158bb544e6
|
| 3 |
+
size 4505776881
|
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H19.30.002.h5ad
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:2b57415ece19e2dac6393ead6b5c5e6a0f6389f1cd49dfe7edd078bc7c86dab5
|
| 3 |
+
size 2796848113
|
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H19.33.004.h5ad
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:70fea9f11c0b5bbc3eaded3f86c5d29c242db518daa14689f3f714be257d15d0
|
| 3 |
+
size 2366575337
|
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H20.33.001.h5ad
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:5ec17b1a943b4be01dfeaf9767fcb5a3047d494baefd93aa2a5924da67fc4dc0
|
| 3 |
+
size 1878753001
|
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/train_data/H20.33.002.h5ad
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:a7ecfbdd0e3da0144b140e4a894c27bd43000030e50e678b8e23109ad99f40b4
|
| 3 |
+
size 1826527193
|
vendor/foundation_model_based_mas/tools_layer/mcp_tools/UCE-main/data/val_data/H20.33.004.h5ad
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:6cdd68f5c5d1d0475d16f1ed815530b9af72541476d318af00ff59bc8ae18dda
|
| 3 |
+
size 2099973617
|