""" mjm_2a_lr / mjm_2b_lr / mjm_2c_lr: LR-head variants of mjm_2 models. Same encoder + context injection as originals, but classification heads are single Linear layers instead of SwiGLU/FFN decoder blocks + Linear heads. """ import torch import torch.nn as nn from src.models.mjm import FFN, SwiGLU class mjm_2a_lr(nn.Module): """mjm_2a with LR heads. Depth auxiliary head kept, decoder injection removed.""" def __init__(self, input_dim=140, latent_dim=20, e_layers=3, enc_hidden_dim=256, expansion_factor=2.67, dropout=0.3, output_num=[3, 24, 137], # unused, kept for CLI compatibility d_layers=1, dec_hidden_dim=128, depth_mlp_dim=64, residual_mode='feature', ): super().__init__() # Encoders (identical to mjm_2a) self.E1 = nn.Sequential( nn.Linear(input_dim, enc_hidden_dim), FFN(n_layers=e_layers, model_dim=enc_hidden_dim, expansion_factor=expansion_factor, dropout=dropout), ) self.E2 = FFN(n_layers=e_layers, model_dim=enc_hidden_dim, expansion_factor=expansion_factor, dropout=dropout) self.E3 = nn.Sequential( FFN(n_layers=e_layers, model_dim=enc_hidden_dim, expansion_factor=expansion_factor, dropout=dropout), nn.Linear(enc_hidden_dim, latent_dim), ) self.recon_decoder = SwiGLU(latent_dim, input_dim, dropout=dropout) # LR heads self.head1 = nn.Linear(enc_hidden_dim, output_num[0]) self.head2 = nn.Linear(enc_hidden_dim, output_num[1]) self.head3 = nn.Linear(latent_dim, output_num[2]) # Auxiliary depth head (kept from mjm_2a) self.depth_head = nn.Linear(enc_hidden_dim, 1) def forward(self, x, depth_imputed): h1 = self.E1(x) h2 = self.E2(h1) H = self.E3(h2) logits1 = self.head1(h1) logits2 = self.head2(h2) logits3 = self.head3(H) recon = self.recon_decoder(H) depth_pred = self.depth_head(h2) return recon, [logits1, logits2, logits3], H, depth_pred class mjm_2b_lr(nn.Module): """mjm_2b with LR heads. Input fusion + volume auxiliary kept.""" def __init__(self, input_dim=140, latent_dim=20, e_layers=3, enc_hidden_dim=256, expansion_factor=2.67, dropout=0.3, output_num=[3, 24, 137], # unused, kept for CLI compatibility d_layers=1, dec_hidden_dim=128, residual_mode='feature', ): super().__init__() # Input fusion (identical to mjm_2b) self.input_proj = nn.Linear(input_dim + 3, input_dim) # Encoders self.E1 = nn.Sequential( nn.Linear(input_dim, enc_hidden_dim), FFN(n_layers=e_layers, model_dim=enc_hidden_dim, expansion_factor=expansion_factor, dropout=dropout), ) self.E2 = FFN(n_layers=e_layers, model_dim=enc_hidden_dim, expansion_factor=expansion_factor, dropout=dropout) self.E3 = nn.Sequential( FFN(n_layers=e_layers, model_dim=enc_hidden_dim, expansion_factor=expansion_factor, dropout=dropout), nn.Linear(enc_hidden_dim, latent_dim), ) self.recon_decoder = SwiGLU(latent_dim, input_dim, dropout=dropout) # LR heads self.head1 = nn.Linear(enc_hidden_dim, output_num[0]) self.head2 = nn.Linear(enc_hidden_dim, output_num[1]) self.head3 = nn.Linear(latent_dim, output_num[2]) # Auxiliary volume head (kept from mjm_2b) self.volume_head = nn.Linear(latent_dim, 1) def forward(self, x, cell_volume_norm, spatial_tiled_norm): x_aug = torch.cat([x, cell_volume_norm, spatial_tiled_norm], dim=-1) x_proj = self.input_proj(x_aug) h1 = self.E1(x_proj) h2 = self.E2(h1) H = self.E3(h2) logits1 = self.head1(h1) logits2 = self.head2(h2) logits3 = self.head3(H) recon = self.recon_decoder(H) vol_pred = self.volume_head(H) return recon, [logits1, logits2, logits3], H, vol_pred class mjm_2c_lr(nn.Module): """mjm_2c with LR heads. FiLM modulation on h1 kept.""" def __init__(self, input_dim=140, latent_dim=20, e_layers=3, enc_hidden_dim=256, film_hidden=64, expansion_factor=2.67, dropout=0.3, output_num=[3, 24, 137], # unused, kept for CLI compatibility d_layers=1, dec_hidden_dim=128, residual_mode='feature', ): super().__init__() self.enc_hidden_dim = enc_hidden_dim # Encoders self.E1 = nn.Sequential( nn.Linear(input_dim, enc_hidden_dim), FFN(n_layers=e_layers, model_dim=enc_hidden_dim, expansion_factor=expansion_factor, dropout=dropout), ) self.E2 = FFN(n_layers=e_layers, model_dim=enc_hidden_dim, expansion_factor=expansion_factor, dropout=dropout) self.E3 = nn.Sequential( FFN(n_layers=e_layers, model_dim=enc_hidden_dim, expansion_factor=expansion_factor, dropout=dropout), nn.Linear(enc_hidden_dim, latent_dim), ) self.recon_decoder = SwiGLU(latent_dim, input_dim, dropout=dropout) # LR heads self.head1 = nn.Linear(enc_hidden_dim, output_num[0]) self.head2 = nn.Linear(enc_hidden_dim, output_num[1]) self.head3 = nn.Linear(latent_dim, output_num[2]) # FiLM context network (kept from mjm_2c) self.film_net = nn.Sequential( nn.Linear(3, film_hidden), nn.SiLU(), nn.Linear(film_hidden, enc_hidden_dim * 2), ) def forward(self, x, cps, spatial_tiled_norm): h1 = self.E1(x) # FiLM modulation context = torch.cat([cps, spatial_tiled_norm], dim=-1) film_params = self.film_net(context) gamma, beta = film_params.chunk(2, dim=-1) h1_mod = (1.0 + gamma) * h1 + beta h2 = self.E2(h1_mod) H = self.E3(h2) logits1 = self.head1(h1_mod) logits2 = self.head2(h2) logits3 = self.head3(H) recon = self.recon_decoder(H) return recon, [logits1, logits2, logits3], H