""" Dataloader for global_data_v2.npz. Returns all fields needed by mjm_2a/b/c trainers. """ import numpy as np import torch from torch.utils.data import Dataset, DataLoader class SpatialSEAAD_V2_Dataset(Dataset): def __init__(self, X, y_class, y_subclass, y_supertype, batch_donor, spatial, spatial_tiled, cps, confidence, depth_norm, has_depth, cell_volume_norm, has_volume, meta_info): self.X = torch.from_numpy(X).float() self.y_class = torch.from_numpy(y_class).long() self.y_subclass = torch.from_numpy(y_subclass).long() self.y_supertype = torch.from_numpy(y_supertype).long() self.batch_donor = torch.from_numpy(batch_donor).long() self.spatial = torch.from_numpy(spatial).float() self.spatial_tiled = torch.from_numpy(spatial_tiled).float() self.cps = torch.from_numpy(cps).float() self.confidence = torch.from_numpy(confidence).float() self.depth_norm = torch.from_numpy(depth_norm).float() self.has_depth = torch.from_numpy(has_depth.astype(np.float32)).float() self.cell_volume_norm = torch.from_numpy(cell_volume_norm).float() self.has_volume = torch.from_numpy(has_volume.astype(np.float32)).float() meta = meta_info.item() self.num_c = meta.get('num_class') self.num_sc = meta.get('num_subclass') self.num_st = meta.get('num_supertype') def __len__(self): return self.X.shape[0] def __getitem__(self, idx): return { 'X': self.X[idx], 'spatial': self.spatial[idx], 'spatial_tiled': self.spatial_tiled[idx], 'batch_id': self.batch_donor[idx], 'y_class': self.y_class[idx], 'y_subclass': self.y_subclass[idx], 'y_supertype': self.y_supertype[idx], 'cps': self.cps[idx], 'confidence': self.confidence[idx], 'depth_norm': self.depth_norm[idx], 'has_depth': self.has_depth[idx], 'cell_volume_norm': self.cell_volume_norm[idx], 'has_volume': self.has_volume[idx], } def build_dataloaders_v2(npz_path, batch_size=512, seed=42, num_workers=8): data = np.load(npz_path, allow_pickle=True) X_all = data['X'] y_c_all = data['y_class'] y_sc_all = data['y_subclass'] y_st_all = data['y_supertype'] batch_all = data['batch_donor'] spatial_all = data['spatial'] spatial_tiled_all = data['spatial_tiled'] cps_all = data['cps'] conf_all = data['y_supertype_confidence'] depth_all = data['depth_norm'] has_depth_all = data['has_depth'] vol_all = data['cell_volume_norm'] has_vol_all = data['has_volume'] meta_info = data['meta'] # per-donor split (same logic as v1) unique_donors = np.unique(batch_all) np.random.seed(seed) np.random.shuffle(unique_donors) test_donors = unique_donors[:6] val_donors = unique_donors[6:9] train_donors = unique_donors[9:] def _slice(mask): return SpatialSEAAD_V2_Dataset( X_all[mask], y_c_all[mask], y_sc_all[mask], y_st_all[mask], batch_all[mask], spatial_all[mask], spatial_tiled_all[mask], cps_all[mask], conf_all[mask], depth_all[mask], has_depth_all[mask], vol_all[mask], has_vol_all[mask], meta_info, ) mask_train = np.isin(batch_all, train_donors) mask_val = np.isin(batch_all, val_donors) mask_test = np.isin(batch_all, test_donors) train_ds = _slice(mask_train) val_ds = _slice(mask_val) test_ds = _slice(mask_test) train_loader = DataLoader(train_ds, batch_size=batch_size, shuffle=True, drop_last=True, num_workers=num_workers) val_loader = DataLoader(val_ds, batch_size=batch_size, shuffle=True, num_workers=num_workers) test_loader = DataLoader(test_ds, batch_size=batch_size, shuffle=False, num_workers=num_workers) return train_loader, val_loader, test_loader