import csv import re import unicodedata from pathlib import Path # ── Paths ────────────────────────────────────────────────────────────────────── BASE = Path(__file__).parent INPUT_FILES = { "train": BASE / "train.csv", "test": BASE / "test.csv", } OUTPUT_FILES = { "train": BASE / "train_cleaned.csv", "test": BASE / "test_cleaned.csv", } # ── Metadata patterns to strip ───────────────────────────────────────────────── METADATA_PATTERNS = [ r"Pass\s*Key\s*:\s*\d+", r"PRINTED\s+BY[\w\s,\.]*", r"Report\s+Date\s*:\s*[\d\-/]+\s*[\d:]+\s*[AP]M", r"THIS\s+REPORT\s+HAS\s+BEEN[^.]*\.", r"Reg\.?\s*No\.?\s*:\s*[\w/\-]+", r"Thanks\s+for\s+reference[\w\s,\.]*", r"={3,}.*", # === separators and everything after r"\*{3,}.*", # *** separators r"DISCLAIMER[^.]*\.", r"This\s+report\s+is\s+confidential[^.]*\.", r"For\s+clinical\s+use\s+only[^.]*\.", ] # ── Word formation fixes (merged words) ─────────────────────────────────────── WORD_FIXES = { r"foraminalnarrowing": "foraminal narrowing", r"papyraceaon": "papyracea on", r"Bilateralfronto": "Bilateral fronto", r"bilateralfronto": "bilateral fronto", r"Ethmoidappears": "Ethmoid appears", r"ethmoidappears": "ethmoid appears", r"thislevel": "this level", r"\bL(\d)L(\d)\b": r"L\1-L\2", # L3L4 → L3-L4 r"\bL(\d)S(\d)\b": r"L\1-S\2", # L5S1 → L5-S1 } # ── Non-ASCII normalisation map ──────────────────────────────────────────────── CHAR_MAP = { "×": "x", # × multiplication sign "–": "-", # – en-dash "—": "-", # — em-dash "’": "'", # ' right single quote "‘": "'", # ' left single quote "“": '"', # " left double quote "”": '"', # " right double quote "…": "...", # … ellipsis "°": " degrees", # ° degree sign } # ── HTML / URL strip ─────────────────────────────────────────────────────────── HTML_PATTERN = re.compile(r"<[^>]+>") URL_PATTERN = re.compile(r"https?://\S+|www\.\S+") MULTI_SPACE = re.compile(r" +") MULTI_DOT = re.compile(r"\.{2,}") MULTI_SLASH = re.compile(r"/{2,}") def strip_metadata(text: str) -> str: for pat in METADATA_PATTERNS: text = re.sub(pat, "", text, flags=re.IGNORECASE) return text def fix_word_formation(text: str) -> str: for pat, replacement in WORD_FIXES.items(): text = re.sub(pat, replacement, text) return text def normalise_chars(text: str) -> str: for char, replacement in CHAR_MAP.items(): text = text.replace(char, replacement) # drop any remaining non-ASCII that slipped through text = text.encode("ascii", errors="ignore").decode("ascii") return text def clean_text(text: str) -> str: text = strip_metadata(text) text = HTML_PATTERN.sub("", text) text = URL_PATTERN.sub("", text) text = fix_word_formation(text) text = normalise_chars(text) text = MULTI_DOT.sub(".", text) text = MULTI_SLASH.sub("/", text) text = MULTI_SPACE.sub(" ", text) text = text.lower() return text.strip() def process(split: str): src = INPUT_FILES[split] dst = OUTPUT_FILES[split] stats = { "total": 0, "duplicates": 0, "metadata_fixed": 0, "word_fix": 0, "char_normalised": 0, "too_short": 0, "too_long": 0, "kept": 0, } seen_transcriptions: set[str] = set() rows_out: list[dict] = [] orphaned_audio: list[Path] = [] with src.open(newline="", encoding="utf-8") as f: reader = csv.DictReader(f) rows = list(reader) stats["total"] = len(rows) for row in rows: original = row["transcription"] cleaned = clean_text(original) # track what changed if cleaned != original: if any(re.search(p, original, re.IGNORECASE) for p in METADATA_PATTERNS): stats["metadata_fixed"] += 1 if any(re.search(p, original) for p in WORD_FIXES): stats["word_fix"] += 1 if any(c in original for c in CHAR_MAP): stats["char_normalised"] += 1 word_count = len(cleaned.split()) # skip empty after cleaning if not cleaned: orphaned_audio.append(BASE / row["file_name"]) continue # skip duplicates (keep first occurrence) if cleaned in seen_transcriptions: stats["duplicates"] += 1 orphaned_audio.append(BASE / row["file_name"]) continue seen_transcriptions.add(cleaned) # flag but keep short / long (let user decide manually) if word_count < 5: stats["too_short"] += 1 if word_count > 300: stats["too_long"] += 1 rows_out.append({"file_name": row["file_name"], "transcription": cleaned}) stats["kept"] += 1 with dst.open("w", newline="", encoding="utf-8") as f: writer = csv.DictWriter(f, fieldnames=["file_name", "transcription"]) writer.writeheader() writer.writerows(rows_out) # delete audio files for removed rows deleted = 0 missing = 0 for audio_path in orphaned_audio: if audio_path.exists(): audio_path.unlink() deleted += 1 else: missing += 1 print(f"\n{'='*55}") print(f" {split.upper()} -- {src.name} -> {dst.name}") print(f"{'='*55}") print(f" Total rows : {stats['total']}") print(f" Duplicates removed : {stats['duplicates']}") print(f" Metadata stripped : {stats['metadata_fixed']}") print(f" Word formation fixed: {stats['word_fix']}") print(f" Chars normalised : {stats['char_normalised']}") print(f" Short (<5 words) : {stats['too_short']} (kept, review manually)") print(f" Long (>300 words) : {stats['too_long']} (kept, review manually)") print(f" Final rows kept : {stats['kept']}") print(f" Audio files deleted : {deleted}") if missing: print(f" Audio not found : {missing} (already missing)") print(f"{'='*55}") if __name__ == "__main__": print("Cleaning dataset — originals unchanged.") process("train") process("test") print("\nDone. Cleaned files saved.")